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Journal of Virology, January 2004, p. 683-691, Vol. 78, No. 2
0022-538X/04/$08.00+0 DOI: 10.1128/JVI.78.2.683-691.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Department of Microbiology and Immunology, College of Medicine, University of Illinois at Chicago, Chicago, Illinois 60612
Received 17 July 2003/ Accepted 3 October 2003
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One of the major advantages of using Tva/EnvA as a model to elucidate the viral entry mechanism is that the viral interaction domain of Tva is solely determined by a single low-density lipoprotein (LDL) receptor module within the extracellular domain of Tva (3, 21), making it a simple model amenable to molecular, biochemical, and structural analysis. The LDL-A module of Tva is 40 amino acids in length and includes six invariable cysteines and five highly conserved acidic residues found in other LDL-A modules such as human LDL receptor and LDL receptor-related proteins (1). Biochemical and structural analysis of different LDL-A modules demonstrates that the six conserved cysteines are involved in the formation of three pairs of disulfide bonds. Furthermore, structural analysis of several individual LDL-A modules (and, recently, of the entire ectodomain of human LDL receptor) by X-ray crystallography showed that the side chains of four conserved acidic residues near the C terminus and the carbonyl oxygen groups of two nonacidic residues of each LDL-A module coordinate calcium binding (9, 24, 25). These common structural features of LDL-A modules are important for proper folding and, thus, for their functions in ligand binding.
The role of the Tva LDL-A module in EnvA binding and ASLV-A entry has been extensively examined by molecular, biochemical, and structural analysis. It has been demonstrated that the LDL-A module of Tva efficiently mediated ASLV-A entry when it was appended to a heterologous membrane-spanning domain (21). Furthermore, this module of Tva can be functionally replaced by a modified human LDL-A4 module in mediation of ASLV-A entry (22). These studies, together with mutational analysis (23, 31, 32), have identified several putative viral interaction residues important for viral entry. Biochemical and structural analysis demonstrated that like other LDL-A modules, the correct in vitro folding of the Tva LDL-A module is calcium dependent (26-28). Surprisingly, however, calcium is not essential for EnvA binding once the protein is correctly folded (30).
One important structural difference between the Tva and other LDL-A modules is that the Tva LDL-A module does not have the signature anti-parallel ß-sheet observed at the N-terminal C1-C3 region of other LDL-A modules (5, 6, 8, 9, 17, 20, 25, 26, 28). The C2-C3 region of the Tva LDL-A module contains nine residues instead of the four to five residues seen in the other LDL-A modules, and this region of Tva is responsible for the flexible conformation at the N terminus (28). In this study, we wanted to examine the role of this region in determining the receptor function of Tva. We found that the spacing between the C2 and C3 regions of the Tva LDL-A module is an important determinant for ASLV-A entry. The present study provides strong evidence that one role of the N-terminal region of the Tva LDL-A module is to allow proper folding and overall conformation of the protein for optimal interaction with EnvA in ASLV-A entry.
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Cloning, mutagenesis, and mutant nomenclature. A chimeric Tva construct containing the human LDL-A5 instead of the Tva LDL-A module was generated as follows. The PCR-amplified coding region for human LDL-A5 was digested (using human LDL receptor cDNA as the template) (18) with restriction endonucleases BamHI and SacII, and the digested DNA fragment was inserted into the BamHI/SacII-digested Myc-Tva vector (22). This construct is referred to as TL5, where T stands for Tva and L5 pertains to the LDL-A5 region. The other TL5 derivatives were generated using the TL5 construct as the template by a standard two-step PCR protocol. Four amino acids in the TL5 construct, namely, R19, G23, E33, and G34, were replaced with the corresponding residues of the Tva LDL-A module either individually or in combination (Fig. 1B). Two additional TL5 chimeric constructs were generated. TL5 chimera 1 has the N-terminal C1-C3 region from the Tva LDL-A module and also contains the substitutions R19L, G23H, and E33W. TL5 chimera 2 is same as TL5 chimera 1 except that it also has the N34G substitution (Fig. 1B). In addition, constructs C5 and L5 were generated using TL5 chimera 2 as the template but contained the C2-C3 region from the chicken Tva LDL-A module and the C2-C3 region of the human LDL-A22 module of LRP2, respectively.
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FIG. 1. (A) Sequence alignment of quail Tva LDL-A module with human LDL-A4 and LDL-A5 receptors 4 and 5. Residues are numbered according to the sequence of the mature Tva (1). The six invariable cysteines are boxed. The consensus amino acids among these and other LDL-A modules are shown at the bottom. (B) Tva/hLDL-A5 constructs generated in this study. Human LDL-A5 (hLDL-A5) is 35 amino acids in length and is numbered from 1 to 35. The four residues in LDL-A5 that were targeted are underlined. The nomenclature of the TL5 constructs is similar to that used previously for the TL4 constructs.
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Protein surface expression was examined by fluorescence-activated cell sorter (FACS) analysis. Briefly, 293T cells were transiently transfected with 10 µg of DNAs of myc-Tva and TL5 constructs by the CaPO4 method. At 48 h posttransfection, cells were resuspended in FACS buffer (phosphate-buffered saline containing 2% fetal calf serum) to 5 x 106 cells/ml. Cells were seeded into a U-bottom 96-well plate and were incubated with 50 µl of mouse MAb 9E10 (10 µg/ml stock) for 30 min. Cells were then washed twice with FACS buffer and incubated with 50 µl of fluorescein isothiocyanate-conjugated rat anti-mouse immunoglobulin G1 antibody at a final concentration of 10 µg/ml for 20 min. Cells were washed again and resuspended in 300 µl of FACS buffer. Cells were stained for viability with 0.5 µl of propidium iodide and were analyzed using a Becton Dickinson FACSCalibur flow cytometer and CellQuest software.
ELISA-based binding test. To examine the ability of the TL5 chimeric proteins to bind EnvA, an enzyme-linked immunosorbent assay (ELISA)-based binding test, which was modified from a published protocol (22, 23), was developed. Human 293T cells were transiently transfected with gD-EnvA, myc-Tva, and the TL5 chimeric constructs shown in Fig. 1B. The transfected cells were induced with 10 mM sodium butyrate 24 h posttransfection and lysed 40 h posttransfection with 1% Triton lysis buffer. Protein expression was examined and semiquantified by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and Western blotting using MAbs 9E10 (for myc-tagged Tva and TL5 constructs) and 1D3 (for gD-tagged EnvA). The ELISA binding test was performed as follows: 96-well plates were coated with MAb 9E10 for 24 h. After three washings, the plates were blocked for 30 min with phosphate-buffered saline containing 0.05% Tween 20, 0.5% bovine serum albumin, and 0.05% sodium azide. A total of 100 ml of lysates from cells transfected with wild-type (wt) Tva or TL5 construct DNAs was added to each well for 1 h with shaking at 4°C. The plates were then washed three times with distilled water, and 100 µl of gD-EnvA lysate was added to each well for 1 h with shaking. The wells were washed and incubated with an anti-EnvA tail rabbit antibody for one more hour at 4°C. Finally, the plates were washed four times, ABTS [2,2'-azinobis (3-ethylbenzthiazolinesulfonic acid] and hydrogen peroxide were added to each well, and the absorbance at 405 nm was read after incubation. Each experiment was performed in triplicate, and the relative ability of each protein to bind EnvA was expressed as the percentage of wt Tva binding to EnvA.
Infectivity assays. Two different viral systems were employed in this study: a recombinant ASLV-A, RCAS(A)AP, which carries an alkaline phosphatase (AP) gene as the reporter (10), and the EnvA-pseudotyped HIV viruses, which carry a luciferase gene as the reporter (4, 12). The infectivity assay was carried out as previously described (21). Briefly, 293T cells were transiently transfected with DNAs of the Tva or TL5 constructs by the CaPO4 method. At 24 h posttransfection, cells were seeded in six-well plates and then challenged with RCAS(A)AP- or the EnvA-pseudotyped HIV viruses. The RCAS(A)AP-infected cells were stained for AP, and the AP-positive cells were enumerated under a microscope. The EnvA-pseudotyped HIV-infected cells were lysed, and luciferase activity was measured with a standard luminometer.
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FIG. 2. Analysis of protein expression of TL5 constructs. Transient expression of the TL5 constructs was examined by Western blotting following SDS-PAGE. At 48 h posttransfection, 293T cells were lysed with Triton lysis buffer and aliquots of samples were subjected to SDS-PAGE and Western blotting. Molecular mass markers (in kilodaltons) are shown to the right of the panel.
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FIG. 5. The EnvA-binding abilities of TL5 constructs measured by an ELISA-based binding test. Human 293T cells were transiently transfected with gD-EnvA, myc-Tva, and the TL5 chimeric constructs. An ELISA-based binding test (described in Materials and Methods) was performed to measure the relative level of affinity of binding to EnvA of each of the TL5 proteins compared to that of myc-Tva. Mock, mock transfected.
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Human 293T cells were transiently transfected with the TL5 construct DNAs and lysed. Protein expression was examined by Western blotting using 9E10, an antibody which specifically recognizes the myc tag portion of these proteins. All 11 TL5 constructs were expressed well in 293T cells (Fig. 2, lanes 3, 4, 5, 7, 8, 9, and 11 to 15). As was previously observed with wt Tva and TL4 constructs (22, 23), each of the TL5 proteins migrated as a smear of multiple bands on SDS-PAGE, indicating that these proteins were heavily modified by glycosylation in 293T cells.
To examine the ability of the TL5 proteins to mediate ASLV-A infection, the 293T cells transiently transfected with the TL5 construct DNAs were challenged with the RCAS(A)AP and the recombinant ASLV-A vector; the infected cells were enumerated postinfection. Since expression of Tva in native avian cells is extremely low, we were concerned that overexpression of the TL5 constructs in 293T cells by transient transfection might mask the defect of these proteins in mediation of viral entry. To avoid this potential problem, various amounts (1, 5, and 20 µg) of DNA of each TL5 construct as well as wt Tva were used in transfection prior to RCAS(A)AP challenges. Protein expression was detectable by Western blotting and flow cytometry when 5 or 20 µg of DNA was used in transfection (data not shown).
As shown in Fig. 3, challenging the wt Tva DNA-transfected 293T cells with RCAS(A)AP viruses resulted in high numbers of AP-positive cells (approximately 105 AP-positive cells per milliliter of viral stock used) when either a low or high amount of DNA was used in transfection, indicating that wt Tva can efficiently mediate ASLV-A entry. As a negative control, mock-transfected 293T cells were also challenged with RCAS(A)AP viruses; no background AP-positive cells were detected. Among the 11 TL5 constructs, only three (TL5LHG, TL5LHW, and TL5LHWG) mediated low levels of ASLV-A infection at a level at least 100-fold lower than that seen with wt Tva (Fig. 3). The rest of the TL5 constructs did not display any viral receptor function (data not shown). These results are in stark contrast with those seen with the TL4 chimeric constructs with respect to mediation of ASLV-A infection, as previously reported (22). For example, while TL5LHWG was approximately 100-fold lower than that seen with wt Tva, the similar TL4 construct (TL4G-A19LD23H) was able to mediate efficient viral entry. One plausible explanation is that human LDL-A4 is more conserved than human LDL-A5 with respect to the Tva LDL-A module between cysteines 3 and 6 (Fig. 1A). These results suggest that additional viral interaction determinants must be critical for maintaining the optimal viral receptor function of Tva.
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FIG. 3. The abilities of TL5 constructs to mediate ASLV-A entry as determined using RCAS(A)AP vector. Human 293T cells transiently transfected with various amounts of plasmid DNA of the constructs shown in Fig. 1 were challenged with a series of 10-fold dilutions of RCAS(A)AP, a recombinant ASLV-A virus carrying an AP reporter gene. Infected cells were fixed with 2% paraformaldehyde at 48 h postinfection and stained for AP activity. The ability of a construct to mediate viral infection is expressed as the number of AP-positive cells (in international units) per milliliter of virus stock used. Experiments were repeated several times with consistent results, and the results of a representative experiment are shown here.
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Examination by an EnvA-pseudotyped HIV infection assay of ASLV-A entry for TL5 constructs. The assay described above, which uses a recombinant ASLV-A virus for infection followed by AP staining and counting under a microscope for infectivity, is a reliable method for measurement and comparison of the abilities of Tva and its derivatives or mutants to mediate viral entry. However, one major drawback of this assay is that counting under a microscope is time consuming and error prone. Thus, we used the luciferase gene as the reporter to establish an HIV-based pseudotyping system to quantitatively measure ASLV-A entry.
To test the feasibility and specificity of this system, the DNA of HIV vector pNL4-3.Luc.R-E (4, 12) was cotransfected with the DNAs of either the ASLV-A glycoprotein EnvA or VSV-G to generate the pseudotyped HIV viral stocks (see Materials and Methods for the details). The produced viral stocks were used to challenge mock-transfected human 293T cells or the 293T cells transiently expressing Tva, and the luciferase activity of the cells was determined with a luminometer. The cells infected by the VSV-G-pseudotyped HIV viral stock, as expected, gave a high level of luciferase activity (approximately 8 logs of relative light units [RLU]) regardless of whether Tva was expressed or not (Fig. 4A), indicating that VSV-G mediated entry is Tva independent. In contrast, the cells challenged with the EnvA-pseudotyped HIV viruses only gave a high level of luciferase activity (also about 8 logs of RLU) when the cells expressed Tva. However, the cells challenged by the HIV virions lacking a glycoprotein, or the cells without Tva expression challenged by the EnvA-pseudotyped HIV virions, only gave background luciferase activity (Fig. 4A). These results indicate that EnvA-mediated HIV entry is Tva dependent, as expected, demonstrating the feasibility and specificity of the EnvA-pseudotyped HIV system to measure ASLV-A entry.
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FIG. 4. (A) Establishment (using a luciferase gene as the reporter) of the EnvA-pseudotyped HIV system. Human 293T cells were transiently transfected with Tva or mock transfected, and the transfected cells were challenged with the EnvA-pseudotyped HIV viruses. The infected cells were lysed, and luciferase activity levels were measured and are expressed as RLU. EnvA, the ASLV-A glycoprotein-pseudotyped HIV; vector, HIV without any viral glycoprotein. Experiments (performed in triplicate) were repeated several times. The results of a representative experiment are shown here. (B) The abilities of TL5 constructs to mediate ASLV-A entry as measured using the EnvA-pseudotyped HIV viruses. Mock, mock transfected; TL5 Ch2, TL5 chimera 2; TL5 Ch1, TL5 chimera 1. Experiments (performed in triplicate) were repeated three times with consistent results. Bars, standard deviations.
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Most TL5 proteins do not efficiently bind to ASLV-A glycoprotein EnvA. To further investigate the interaction between the TL5 proteins and EnvA, the binding properties of these proteins to EnvA were examined by an ELISA-based binding test. This assay was modified from a previous protocol (23) which allows quick assessment of a large number of Tva mutants for their ability to bind EnvA. As shown in Fig. 5, among the 14 TL5 proteins only TL5 chimera 2 displayed a relatively high level of EnvA binding, giving approximately one-third of that of wt Tva, while the remaining 13 TL5 proteins displayed little or no detectable EnvA binding (less than 10% of that of wt Tva). These results suggest that the failure of these TL5 constructs to mediate efficient ASLV-A infection is due to a defect in high-affinity binding to EnvA. It is interesting that although three TL5 constructs (TL5LHW, TL5LHWG, and TL5 chimera 1) supported a low level of ASLV-A infection (Fig. 3 and 4), they did not display detectable EnvA binding (Fig. 5). Rong et al. have previously observed similar discrepancies (measured by ELISA-based test) between the ability of many Tva mutants and TL4 proteins to mediate viral entry and their ability to bind EnvA (22, 23). A plausible explanation for these discrepancies is that the ELISA-based binding test used in this and previous studies is not sensitive enough to distinguish the binding differences among the TL5 proteins that have low-level binding affinities to EnvA.
The spacing between the second and third cysteines of the Tva LDL-A module is important for receptor function. Previously we have shown that the overall conformation of the Tva LDL-A module is different from the structures of the other reported LDL-A modules, including human LDL-A5. The N terminus of the Tva LDL-A module does not contain the signature antiparallel ß-sheet observed in other LDL-A modules and is more flexible than other reported LDL-A modules (28). Sequence alignment shows that there are nine residues between the second and third cysteines for the Tva LDL-A module and that the other LDL-A modules with reported structures contain only four to six residues. The fact that the TL5 chimera 2 can mediate ASLV-A infection efficiently and TL5LHWG cannot do so prompted us to examine whether the overall conformation of the N terminus of the Tva LDL-A module contributes to the receptor function of Tva. As previously reported, LDL-A22 is the only other known LDL-A module that (just like that of Tva) contains nine residues between C2 and C3, thus conserving the spacing between cysteines 2 and 3. Wang et al. proposed that LDL-A22 adopts a structure similar to that of the Tva LDL-A module (28). However, none of the nine amino acids in the C2-C3 regions are conserved between human LDL-A22 and the quail Tva LDL-A module, while four of the nine residues are conserved between quail and chicken Tva proteins.
Two TL5 variants, C5 and L5, which are identical to TL5 chimera 2 except that the residues between C2 and C3 of TL5 chimera 2 have been replaced with the corresponding residues of chicken Tva (C5) or LDL-A22 of LDL receptor-related protein (L5), respectively, were constructed (Fig. 6A). When they were examined by FACS analysis, both constructs were expressed well on the surface of the transfected 293T cells (data not shown). The EnvA-pseudotyped HIV viruses were used to challenge the transfected 293T cells as described above to examine the TL5 variants for their ability to mediate ASLV-A entry. The cells transiently expressing C5 gave a level of luciferase activity comparable to that of wt Tva and TL5 chimera 2 (Fig. 6B), suggesting that C5 is as efficient as wt Tva and TL5 chimera 2 in mediation of ASLV-A infection. Surprisingly, the cells transiently expressing L5 gave a level of luciferase approximately 100-fold higher than the cells expressing TL5LHWG and only about 6-fold lower than the Tva-expressing cells (Fig. 6B). Since the amino acid sequences of TL5LHWG and L5 are identical between C3 and C6 and are very similar between C1 and C2, we can conclude that the amino acids between C2 and C3 of L5 play an important role in mediation of ASLV-A entry. Furthermore, since only the spacing between C2 and C3 of human LDL-A22 is conserved with respect to that of Tva from quail and chicken, we can conclude that the proper spacing (and thus, likely the proper conformation) of this region plays an important role for the viral receptor function.
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FIG. 6. (A) Constructs of TL5 chimera 2 with substituted C2-C3 regions. C5 has the C2-C3 domain of the chicken Tva LDL-A module, and L5 has the C2-C3 domain of the LDL-A22 from LRP2. (B) The abilities of C5 and L5 to mediate ASLV-A infection (as measured using EnvA-pseudotyped HIV infection). Experiments were repeated three times with consistent results. Bars, standard deviations. Mock, mock transfected.
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The role of Tva in ASLV-A entry has been extensively examined by molecular, biochemical, and structural analysis. However, most work has concentrated on the C-terminal region of the Tva LDL-A module (C3-C6); this region was found to be essential for viral entry. This has led to the identification of individual residues in this region which are either ligand interaction residues or involved in stability and conformation of the protein (2, 22, 23, 31, 32). For example, Leu34, His38, Trp48, and Gly49 of Tva were identified as being important for viral receptor function. These results are substantiated by the results of the present study. We have shown that replacements of the corresponding residues in human LDL-A5 by these four amino acids, in addition to the amino terminus of Tva, were required to convert human LDL-A5 into a functional viral receptor. Interestingly, the side chains of His38 and Trp48 of Tva were shown to be exposed on the surface, in consistency with the notion that these residues are EnvA contact residues. However, the side chain of Leu34 is buried in the interior of the module together with Phe16 and Pro21, forming the hydrophobic core. These data indicate that the role of Leu34 is to maintain the correct folding of Tva; thus, it is unlikely to be a ligand contact residue (28). We speculate that conversion of the corresponding residue of human LDL-A5 (Arg19) to a leucine (as described in this study) or conversion of the corresponding residue of human LDL-A4 (Ala19) to a leucine (as described in the previous report) can help maintain the correct folding in TL5 and TL4 chimeras, respectively.
The major difference between the present study using human LDL-A5 and the previous study using LDL-A4 is that LDL-A5 with the aforementioned four substitutions was not able to mediate efficient viral infection unless its N terminus was also replaced with the corresponding region from Tva. This finding is in contrast to that of the previous study with LDL-A4, which demonstrated that LDL-A4 could be converted into a functional viral receptor with merely the aforementioned substitutions and without replacement of the N terminus by that of Tva (22). This may be explained by a higher level of sequence homology between Tva and LDL-A4 than between Tva and LDL-A5 at the C terminus. For example, there are two lysine residues in LDL-A5 (K27 and K29) (Fig. 1A) that are absent in the Tva module and LDL-A4. Perhaps these positively charged residues adversely affect the binding affinity between LDL-A5 and EnvA, thus making it a less efficient viral receptor. It should be pointed out that the modified human LDL-A4 protein (TL4G-A19LD23H) was also somewhat defective in EnvA binding compared to that of wt Tva (22). This defect in EnvA binding could be corrected by replacing the N terminus of LDL-A4 with the corresponding region of Tva (data not shown), again suggesting the important role of the N-terminal region of Tva in mediation of efficient EnvA binding and ASLV-A infection.
Sequence alignment between Tva and other LDL-A modules indicates that the N terminus of the Tva LDL-A module (between cysteines 1 and 3) is more divergent than the C terminus of other LDL-A modules (Fig. 1A). Indeed, the structure of the LDL-A module of Tva reveals that compared to the other LDL-A module structures reported to date, the N terminus of the Tva module adopts a unique conformation. The Tva LDL-A module does not have the signature anti-parallel ß-sheet at the N terminus observed in other LDL-A modules; thus, it has an even less recognizable secondary structure (28). Comparisons of quail and chicken Tva protein sequences indicate that the C1-C2 regions are highly similar except for two conserved variations and that the C3-C6 regions are identical or conserved except for one residue. However, there is significant sequence divergence in the Tva LDL-A module between quail and chicken in the region between the second and the third cysteinesonly four of the nine residues are conserved (Fig. 7). This sequence divergence may dictate subtle differences in this region and determine specificity in receptor usage. Indeed, it was reported that several ASLV-A variants which were genetically selected for a soluble form of quail Tva could not use quail Tva but could still efficiently use chicken Tva as the receptor in viral entry (14-16). These results seem to suggest that specific residues in the N terminus of Tva play an important role in specificity in receptor usage.
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FIG. 7. Sequence comparison of the C1-C3 regions among the pertinent LDL-A modules in this study. Residues are numbered at the top according to the mature Tva. Residues identical to those of quail Tva are boxed.
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In conclusion, the results of the present study have demonstrated that the spacing between cysteines 2 and 3 of the Tva LDL-A module plays a crucial role in mediation of ASLV-A entry. We hypothesize that this region can help maintain the proper conformation of Tva upon EnvA binding, thus optimizing Tva-EnvA interactions in ASLV-A entry. It is important to point out that the results reported here do not exclude the possibility that some individual residues in this region play a role in viral entry. We have shown that C5 is approximately 10-fold more efficient than L5 in mediation of viral entry (Fig. 6B), suggesting that certain residues of chicken and quail Tva in this region are directly involved in ligand contact. Therefore, the N-terminal region of the Tva LDL-A module is responsible for both correct protein conformation and ligand recognition for optimal receptor function in mediations of ASLV-A entry.
The research work was supported by American Heart Association Midwest Affiliate grant-in-aid 9951134Z and National Institutes of Health grant CA 092459. L.R. was a recipient of the Schweppe Foundation Career Development Award. K.R. was supported by a predoctoral fellowship from American Heart Association Midwest Affiliate.
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