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Journal of Virology, January 2004, p. 595-602, Vol. 78, No. 2
0022-538X/04/$08.00+0 DOI: 10.1128/JVI.78.2.595-602.2004
Section on Molecular Virology, Laboratory of Cellular and Molecular Regulation, National Institute of Mental Health, Bethesda, Maryland 20892
Received 10 July 2003/ Accepted 3 October 2003
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Early structural predictions for the arrangement of the PiT receptors in the plasma membrane were based on Kyte-Doolittle hydropathy analyses (8). Both proteins were initially predicted to be nearly identical in structure, each comprising 10 transmembrane (TM) domains. Additionally, the observed absence of a signal peptide for both proteins was used to assign cytoplasmic locations for the N and C termini; both were initially predicted to contain five extracellular domains (ECDs) and four intracellular domains, with all potential N-linked glycosylation sites being positioned within intracellular domains (8).
In order to understand how differences in amino acid composition between PiT1 and PiT2 affect receptor function, researchers have used chimeric PiT1-PiT2 proteins to map regions that are critical for GALV (2, 5, 9, 21, 22, 27, 32) and A-MuLV (12, 13, 14, 21, 28, 30) entry. Previous studies based on Kyte-Doolittle hydropathy models of PiT1 and PiT2 have demonstrated that replacement of the second ECD (ECD2) of PiT1 with the corresponding region of PiT2 results in a chimeric protein which functions as an A-MuLV receptor (12). This result was supported by studies by Lundorf et al. that showed that substitution of PiT2 residues from ECD2 and flanking regions for the corresponding residues of Pho-4, a sodium-dependent phosphate transporter from the filamentous fungus Neurospora crassa, confers A-MuLV receptor function to Pho-4 (13).
It has recently been experimentally determined that both the N and C termini of PiT2 are extracellular, thus reorienting the former first, second, and third ECDs to the cytosol and the former first and second intracellular domains to extracellular positions (26). The reorientation of the N-terminal third of the PiT2 protein was further validated by experiments demonstrating that PiT2 is a glycoprotein carrying an N-linked oligosaccharide in the more recently predicted ECD1 (26). It should be noted that chimeric PiT1-PiT2 receptor studies implicating the former ECD2 as critical to A-MuLV infectivity utilized the earlier Kyte-Doolittle-based PiT receptor topology. The current topological model positions the region formerly designated ECD2 in the cytosol. Interestingly, the region currently designated ECD1 was still present in these chimeras, although it was unclear at the time that this domain was extracellular. Thus, previous results may have been misinterpreted to implicate the former ECD2 as being important for PiT2-mediated A-MuLV infection when, in fact, the receptor function was being mediated by what is now called ECD1.
For A-MuLV receptor function studies, CHOK1 cells have been the preferred cell line, based on the observation that CHOK1 cells are resistant to infection by both GALV and A-MuLV. It was suggested that the reason these cells are refractory to A-MuLV infection is because they express nonfunctional receptors or receptors masked by a tunicamycin-sensitive inhibitor (3, 16, 17, 35). However, it was shown more recently that simply overexpressing the endogenous PiT2 receptor in CHOK1 cells (PiT2CHO) resulted in susceptibility to both GALV and A-MuLV, while expression of the endogenous PiT1 receptor (PiT1CHO) resulted in susceptibility to GALV (30). These findings suggest that the block to A-MuLV infection of CHOK1 cells is not due to the absence of functional receptors, and therefore, CHOK1 cells may not be the best system for investigating A-MuLV receptor function.
As stated above, studies attempting to identify regions of PiT2 that are important for A-MuLV entry used virus infectivity assays to measure receptor function. None of these studies explored the binding capability of A-MuLV to various chimeric receptors, raising the possibility that certain nonfunctional A-MuLV receptors retained the ability to bind A-MuLV while not facilitating entry into target cells. Therefore, while previous studies were useful for mapping receptor regions important for A-MuLV entry, regions of the receptor that are critical for A-MuLV virus binding were not directly assessed.
The purpose of this study was to map the region of PiT2 required for A-MuLV binding and/or entry into host cells, using chimeric PiT1-PiT2 receptors based on the experimentally validated topological models of PiT2, proposed by Salaün and coworkers (25, 26), and PiT1, proposed by Farrell et al. (6). Herein we report that the first ECD of PiT2 is critical for A-MuLV binding and entry.
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Production of retrovirus vectors and stable cell lines. A-MuLV enveloped retrovirus vectors were harvested in supernatants from 293T cells 48 to 72 h after transfection by the calcium phosphate precipitation method (Promega, Madison, Wis.), as previously described (33). The CHOK1 and BHK SN-10 cell lines stably expressing PiT2 or chimeric PiT1-PiT2 receptors were made by transducing cells with vesicular stomatitis virus G pseudotyped retrovirus vectors, using a pLNSX-derived genome expressing the appropriate receptor cDNA, as previously described (6). The assessment of receptor function for the various cell lines was carried out by exposing cells to retrovirus vector-containing supernatant that had been passed through a 0.45-µm-pore-size filter (Millipore, Bedford, Mass.) and then adjusted to contain 10 µg of Polybrene/ml. Twenty-four hours later, the medium was changed and cells were cultured for an additional 24 to 48 h before analysis for expression of ß-galactosidase by histochemical staining with X-Gal (5-bromo-4-chloro-3-indolyl-ß-D-galactopyranoside), as previously described (35). Titers were determined after serial dilution of each vector and averaging of the number of blue CFU (BFU) obtained for each cell line tested in three or more independent experiments. All chimeric receptors described for this study were constructed as both hemagglutinin (HA)-tagged and untagged versions and tested for functionality. The presence of the HA tag within each of the receptor constructs was determined not to have altered receptor function (data not shown).
Chimeric receptor cDNAs. To generate the chimeric PiT1-PiT2 receptor cDNAs C1A and C1E, specific regions of PiT1 were replaced with the corresponding regions of PiT2 between restriction enzyme sites NheI (nucleotide [nt] 196) and AccI (nt 642). For construction of C1A, PiT1 residues 121 to 214 (the region between the HindIII and AccI sites) were replaced with PiT2 residues 106 to 199. A PiT2 cDNA fragment was amplified from a PiT2 plasmid by use of a sense primer incorporating a HindIII site at position 315 and an antisense primer incorporating an AccI site at position 597. A PiT1 fragment was amplified from a PiT1 plasmid by use of a sense primer incorporating the existing NheI site at position 151 and an antisense primer introducing a HindIII site at position 360. The resulting fragments were each cloned into the TOPO-TA cloning vector pCR2.1 (Invitrogen, San Diego, Calif.), excised with HindIII and AccI (for PiT2) or NheI and HindIII (for PiT1), and then cloned into the pSP72 plasmid (Promega), containing the full-length PiT1 gene, between the NheI and AccI sites of PiT1 by a three-way ligation. The resulting C1A cDNA was subcloned into the retroviral vector plasmid pLNS-PiT1 (19) between the HindIII and PflMI sites. C1E contains PiT2 residues 56 to 140 in place of PiT1 residues 71 to 155 between NheI (nt 196) and SacI (nt 460). Primers were designed to introduce SacI sites at position 460 in PiT1 and position 415 in PiT2 by PCR mutagenesis as described above.
The chimeric receptor cDNAs C1F and C1G were made by two rounds of PCR mutagenesis. In the first round, complementary primers were designed which incorporated the individual nucleotide changes desired to mutate specific amino acids. Two fragments were generated by use of these primers with an upstream primer incorporating the NheI site and a downstream primer incorporating the AccI site. These products were annealed, after which a second round of PCR was performed, using the outer primers only. C1F was generated from C1E subcloned into the pSP72 plasmid (pSP72-C1E) by changing the glutamine at position 106 to serine and the valine at position 111 to phenylalanine. C1G was similarly generated from the pSP72 subclone of C1F (pSP72-C1F) by changing the PiT2 threonine residue at position 72 (nt 214 and 215) in C1F back to the original valine residue present in PiT1. The resulting fragments incorporating these amino acid changes were subcloned into the TOPO-TA cloning vector pCR2.1, then into pSP72-C1E or pSP72-C1F, and finally into pLNS-PiT1, as described above, to create pLNS-C1F and pLNS-C1G. C1F contains PiT2 residues 56 to 91 in place of PiT1 residues 71 to 106, and C1G contains PiT2 residues 66 to 91 in place of PiT1 residues 81 to 106. The chimeric receptor K7 was made by replacing PiT1 sequences between the PstI site (nt 1552) and the 3' end of the cDNA with PiT2 sequences. C1 contains PiT2 sequence between the NheI and BglII sites; BglII was introduced into PiT1 at nt 1167 by PCR mutagenesis, as described above.
PCR products containing mutations were ligated into pCR2.1 and sequenced by use of the Thermo Sequenase fluorescence-labeled primer cycle sequencing kit (Amersham Biosciences, Piscataway, N.J.) and Cy-5-labeled primers (Integrated DNA Technologies, Inc., Coralville, Iowa) on an AlfExpress automated sequencer (Amersham Biosciences).
Binding assays. Fluorescence-activated cell sorting-based binding assays using soluble A-MuLV or GALV envelope SU proteins encoding the receptor-binding domain (RBD) fused to a double HA epitope tag (YPYDVPDYA) derived from influenza virus HA were performed as described previously (6), with the following exception. In order to decrease nonspecific binding, HA-tagged RBDs were incubated with target cells at 4°C rather than 37°C. Detection of HA-tagged receptors on the cell surface was accomplished in a similar assay using HA.11 monoclonal antibody (Covance/Babco, Richmond, Calif.), as described previously (11).
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FIG. 1. Comparison of CHOK1 and BHK SN-10 cells stably expressing the human ortholog of PiT2. (A) Flow cytometric histograms of HA-tagged A-MuLV RBD binding. Binding was carried out at 4°C as described in Materials and Methods, followed by incubation with 5 µg of HA.11 monoclonal antibody, recognizing HA-tagged soluble A-MuLV SU, per ml. Bound tag was detected with goat anti-mouse antibody-fluorescein isothiocyanate (1:50). Shaded areas correspond to negative control cells exposed to HA-tagged A-MuLV SU; areas beneath bold lines correspond to CHOK1 or BHK SN-10 cells stably expressing PiT2 receptors exposed to HA-tagged A-MuLV SU. (B) A-MuLV titers expressed as BFU per milliliter ± the standard errors of the means from at least three independent experiments. **, titer results were zero.
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FIG. 2. Functional differences between PiT1-PiT2 receptor chimeras stably expressed in CHOK1 and BHK SN-10 cells. (A) Predicted topologies of chimeric receptor proteins C1 and K7 (see Materials and Methods). TMs are represented by bars (hatched bars, PiT1; solid bars, PiT2) and intra- or extracellular domains are represented by lines (dotted lines, PiT1; solid lines, PiT2). The putative ECDs are numbered 1 through 4. *, N-linked glycosylation site. (B) A-MuLV titers expressed as BFU per milliliter ± the standard errors of the means from at least three independent experiments. Solid bars, CHOK1 cells; open bars, BHK SN-10 cells). **, titer results were zero. (C) Histograms from flow cytometric analysis of BHK SN-10 cells incubated with 5 µg of HA.11 monoclonal antibody, recognizing HA-tagged soluble A-MuLV SU, per ml, followed by goat anti-mouse antibody-fluorescein isothiocyanate (1:50). The x axis represents fluorescence intensity (log scale), and the y axis represents cell number. Shaded areas correspond to negative control BHK SN-10 cells exposed to HA-tagged A-MuLV SU; areas beneath bold lines correspond to BHK SN-10 cells stably expressing chimeric PiT1-PiT2 receptors exposed to HA-tagged A-MuLV SU.
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FIG. 3. Identification of regions within the PiT1-PiT2 C1 chimera that mediate A-MuLV binding and infectivity of BHK SN-10 cells. (A) Chimeras C1A and C1E were constructed to divide C1 into two parts (see Materials and Methods). TMs and ECDs are identified as described for Fig. 2. (B) Infections mediated by BHK SN-10 cells stably expressing C1, C1A, and C1E. A-MuLV titers were expressed as BFU per milliliter ± the standard errors of the means from at least three independent experiments. *, a titer of zero was obtained for C1A. (C) HA-tagged soluble A-MuLV SU binding to BHK SN-10 cells expressing the chimeric receptors was carried out as described for Fig. 1. (D) Direct detection of HA-tagged receptor on the cell surface was done in those cases for which no soluble SU binding or infectivity was detected (chimera C1A). BHK SN-10 cells stably expressing the C1A chimera containing a C-terminal HA tag were subjected to flow cytometric analysis in a manner similar to detection of soluble SU. The shaded area corresponds to BHK SN-10 cells lacking an HA-tagged receptor; areas beneath bold lines correspond to BHK SN-10 cells stably expressing the HA-tagged chimeric C1A receptor.
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FIG. 4. Identification of the first ECD of PiT2 as an important determinant required for A-MuLV binding and infectivity. (A) Schematic representation of PiT1-PiT2 receptor chimeras C1F and C1G, respectively. TMs and ECDs are identified as described for Fig. 2. (B) A-MuLV titers expressed as BFU per milliliter ± standard errors of the means from at least three independent experiments. (C) Binding of HA-tagged soluble A-MuLV to live BHK SN-10 cells stably expressing receptor chimera C1F or C1G was determined as described for Fig. 1.
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FIG. 5. Amino acid sequence comparison of putative ECD1 and TM2 of PiT1 and PiT2. (A) Replacement of PiT1 ECD1 with that of PiT2 renders PiT1 functional as an A-MuLV receptor. The amino acid sequence identity between ECD1 of PiT1 and PiT2 is approximately 70% and includes conservation of the N-linked glycosylation site (*). (B) Alignment of PiT1 and PiT2 TM2 reveals approximately 89% residue identity between the two domains. The bold text represents the difference between PiT1 (valine) and PiT2 (threonine) at PiT1 position 72, which is thought to play a role in determining receptor topology. Numbers indicate where the respective domains begin and end.
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TM2 has been postulated to be one of six amphipathic alpha helices that make up a pore structure within PiT2 (19). These TMs are hypothetically arrayed such that their hydrophobic sides face toward the lipid bilayer of the plasma membrane while their hydrophilic sides form a pore through which inorganic phosphate is transported into the cell. The substitution of a hydrophilic threonine for a hydrophobic valine could alter the positioning of TM2 such that it compromises its contribution to the architecture of the pore, resulting in the reduced A-MuLV binding and titer observed with BHK SN-10 cells expressing C1G (Fig. 5 and 6). In addition, ECD1 is proximal to the region of TM8 that is proposed to harbor a Na+ binding domain (4); therefore, it is conceivable that alterations in ECD1 may also affect receptor binding function by blocking Na+ binding (Fig. 6). The substitution of PiT2 residues at positions 72, 82, 89, 93, 94, 97, 99 to 101, and 106 in ECD1 of PiT1 is requisite for A-MuLV receptor function. It remains unclear whether residues 66 to 91 constitute the sole PiT2 A-MuLV binding domain or if a second domain conserved between PiT1 and PiT2 is required for A-MuLV binding.
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FIG. 6. Hypothetical aqueous pore formed within the PiT receptor by the clustering of six TM amphipathic helices. Each cylinder represents a TM region, with the extracellular and intracellular domains represented as curved lines or loops. When the amphipathic TMs (2, 3, 4, 5, 6, and 8, shown as dark gray cylinders) are oriented so that their hydrophobic sides face the membrane lipid environment and their hydrophilic sides face inward, they form a hexagonal pore consisting of these six alpha helical segments of the PiT1 transporter/receptor. This model is adapted from that proposed by Olah et al. (19) and updated based on the revised topology proposed by Farrell et al. (6). The asterisk represents the position of a proposed Na+ binding domain (4).
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A second intriguing feature of all gammaretrovirus receptor proteins is the presence of N-linked oligosaccharides in their extracellular domains. PiT1, a receptor for GALV, woolly monkey virus, 10A1 MuLV, and feline leukemia virus type B (FeLV-B), contains an N-linked glycosylation site in ECD1 (6). The receptor for FeLV-C (23, 29) is a glycoprotein, as is XPR, the receptor for polytropic and xenotropic MuLVs (1, 31, 37). In many cases, the glycosylated ECD has been implicated as crucial for virus entry. For example, the third ECD of mCAT, the receptor for E-MuLV, has been demonstrated to be critical for E-MuLV binding and entry. In addition, it has been shown that N-linked glycosylation within ECD3 blocks access to the mCAT binding site (reviewed in reference 20). More recently, ASCT, the receptor for feline endogenous virus (RD114), baboon endogenous virus, human endogenous retrovirus type W, simian retroviruses, avian reticuloendotheliosis virus, and avian spleen necrosis virus, has been shown to contain critical N-linked oligosaccharides present in the second ECD that control retroviral receptor utilization of ASCT (15). Herein we reported that the first ECD of PiT2 plays a critical role in A-MuLV binding and entry and that this domain also contains an N-linked glycosylation site (26). Taken together, these observations suggest that all known gammaretrovirus receptors function as electrochemical potential-driven porters and contain an N-glycosylated ECD. Thus, it remains to be determined if glycosylation of the first ECD of the PiT transporters blocks virus binding and entry and if Na+ binding exerts any regulatory effects on A-MLV receptor function.
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