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Journal of Virology, August 2004, p. 8812-8823, Vol. 78, No. 16
0022-538X/04/$08.00+0 DOI: 10.1128/JVI.78.16.8812-8823.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
M. M. Hulst, A. J. de Smit,
and R. J. M. Moormann
Animal Sciences Group, Wageningen University and Research Centre, 8200 AM Lelystad, The Netherlands1
Received 23 January 2004/ Accepted 22 April 2004
| ABSTRACT |
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H mutation may result in a less efficient infection of specific target cells in pigs. Both these features contributed to the attenuation of the C1.1.1/CoBrB virus in vivo. | INTRODUCTION |
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The surface structure of pestivirus virions is composed of three glycoproteins, Erns, E1, and E2 (30). E2 is present as a homodimer and as an E2-E1 heterodimer (30, 39). The C terminus of E2 (and probably of E1 as well) functions as a membrane-spanning domain (13) and anchors the E2-E1 and E2-E2 dimers in the viral lipid membrane. The association of Erns homodimers with the virion is not accomplished by a membrane-spanning domain and is tenuous (7). The mechanism of Erns association with virions is currently unknown. All three envelope proteins contain N-linked glycosyl groups (27, 30, 39). Erns is glycosylated to a higher extent than E1 and E2 are. N-linked glycosyl residues account for about half of the mass of an Erns homodimer (27, 44). A considerable portion of the Erns protein produced in infected cells is secreted into the extracellular environment and circulates in the body fluids of infected animals (27). The unexpected finding that Erns possesses RNase activity (9, 28) led to several interesting studies regarding the function of Erns in the life cycle of pestiviruses. The results of in vitro and in vivo studies indicated that Erns (and its enzyme activity) plays a role in the regulation of RNA synthesis in infected cells (10) and in weakening the immune defense of the host early in infection (2, 20).
Recently, it was demonstrated that in vitro cultivation of CSFV in swine kidney cells selects virus variants that attach to the surfaces of cultured cells by interaction with the membrane-associated glycosaminoglycan heparan sulfate (HS) (11). Using reverse genetics, it was shown that replacement of a neutral serine residue by a positively charged arginine residue in the C terminus of Erns (position 476 in the ORF) changes an HS-independent CSFV to a virus that uses HS as an Erns receptor. These findings showed that interaction of virus-bound Erns with HS immobilizes CSFV on the surfaces of cultured swine kidney cells. Animal experiments showed that this Ser-to-Arg change in the C terminus of Erns did not affect virulence (12). In the same study, it was shown that virus reisolated from pigs infected with the HS-independent recombinant virus was able to infect cultured and primary swine kidney cells by an HS-dependent mechanism. These results suggested that the surface properties of CSFV generated in pigs and carrying 476Ser in the C terminus of Erns are distinct from those of genetically identical virus produced in cell culture.
Field isolates and laboratory strains of CSFV vary considerably in their virulence, but until now, no genetic determinants of virulence could be defined despite extensive efforts in sequencing and detailed phylogenetic studies (14, 35). The same holds true for the search for in vitro parameters that would allow grouping of viruses into virulence classes. No significant qualitative or quantitative differences were found between CSFV strains with different degrees of virulence when RNA replication and protein synthesis were investigated by Mittelholzer et al. (21). However, these researchers showed that reduced particle release from SK6 cells was inversely correlated with the virulence of CSFV strains.
Altered virulence properties of viral variants are the basis for their application as live attenuated vaccines. Therefore, it is of particular interest to elucidate the mechanisms causing virus variants to lose the capacity to produce disease in a host and link them to genetic changes in their genomes. Potential mechanisms for the attenuation of viral virulence include the following: (i) changes in viral binding and penetration properties on host membranes, resulting in altered tissue tropisms; (ii) a reduction of viral replication rate in vivo; (iii) a decreased efficiency of virus spread in the host; and (iv) an increased susceptibility of variant viruses to host antiviral responses (reviewed in reference 31). Virulence attenuation has traditionally been achieved by serial passage of virus in cultured cells or laboratory animals (or both), a selection process that can give rise to adaptive changes that result in reduced virulence in the natural or incidental hosts.
We report here on the mechanism for virulence attenuation of laboratory-derived CSFV variants with altered attachment and surface properties in vitro. Therefore, sequences of a virulent Brescia variant (CoBrB 476R [11]) and a cell-adapted avirulent variant C1.1.1 (41), isolated from blood samples from a pig infected with CSFV strain Brescia, were compared. We studied the roles of these adaptive amino acid changes by generating chimeric CSFVs from full-length cDNA constructs. Infection of pigs with these recombinant viruses revealed a possible role of the adaptive Leu
His mutation at position 710 of the polyprotein, but the 710His variant resulted in an avirulent virus only when the variant also contained three adaptive mutations in Erns. Analysis of in vitro- and in vivo-generated viruses suggested that both the high affinity for HS and an altered surface structure of E2 may result in a less efficient infection of specific target cells in pigs. Both these features contribute to the attenuation of CSFV strain Brescia in vivo.
| MATERIALS AND METHODS |
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Sequence comparison of recombinant viruses C1.1.1 and CoBrB 476R. The isolation and sequencing of virus clones C1.1.1 and CoBrB 476R have been described elsewhere (11, 24). The genomic sequences were compared using AutoAssembler software (Applied Biosystems). Sequence mutations between the two Brescia clones were confirmed by sequencing independent PCR fragments.
Construction, generation, and characterization of chimeric viruses derived from C1.1.1, CoBrB 476R, and CoBrB 476S. Recently, full-length DNA copies of clones C1.1.1 and CoBrB of CSFV Brescia strain have been described (11, 12). These DNA copies were constructed in the same manner as the full-length cDNA of CSFV strain C in low-copy-number plasmid pOK12 (23). The junction between the T7 RNA polymerase promoter sequence and the 5'-terminal nucleotide of C1.1.1 and CoBrB and the junction between the 3'-terminal nucleotide of C1.1.1 and CoBrB and the vector were similar to those described for the full-length copy of strain C in pOK12 (23). Digestion of these full-length cDNAs in pOK12 (named pflC1.1.1 or pflCoBrB) with SrfI generates the exact 3' terminus of the RNA genome of pflC1.1.1 and pflCoBrB. The viruses derived from these two full-length clones are named C1.1.1 and CoBrB 476R, respectively. Animal experiments showed that C1.1.1 is avirulent (11) and CoBrB 476R is virulent (12). The first chimeric constructs were derived from pflC1.1.1 and pflCoBrB 476R, focusing on the amino acid mutations between pflC1.1.1 and pflCoBrB 476R.
To introduce the three adaptive mutations located in the structural region from pflC1.1.1 into a virulent background (pflCoBrB 476R), the ClaI/NcoI fragment (nucleotides [nt] 778 to 5534) from pflC1.1.1 was introduced into ClaI/NcoI-digested pflCoBrB 476R. This resulted in a full-length cDNA pflC1.1.1/CoBrB with adaptive mutations 276S
R and 477T
I in Erns and 710L
H in E2 (see Fig. 3). To introduce the remaining six adaptive amino acid mutations located in the nonstructural region from pflC1.1.1 into a virulent background (pflCoBrB 476R), the NcoI/AatII fragment (nt 5534 to 12279) from pflC1.1.1 was introduced into NcoI/AatII-digested pflCoBrB 476R. This resulted in a full-length cDNA pflCoBrB 476R/C1.1.1 with adaptive mutations 1915A
S and 1971S
P in NS3, 2638L
V in NS4b, 2846R
C in NS5a, and 3419N
I and 3858V
A in NS5b (see Fig. 3). A third full-length cDNA, in which CoBrB 476R was introduced into pflC1.1.1, was constructed by introducing the ClaI/NgoMIV fragment (nt 778 to 2439) of pflCoBrB 476R into ClaI/NgoMIV-digested pflC1.1.1. This construct was named pflC1.1.1/CoBrB (Npro'-C-Erns-E1) (exchanged proteins shown in parentheses; hybrid proteins resulting from the fusion of C1.1.1 and CoBrB indicated by a prime after the protein) (see Fig. 3).
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L in E2. Therefore, the NgoMIV/NcoI fragment (nt 2439 to 5534) of pflC1.1.1 was introduced into pflCoBrB 476S, resulting in a full-length copy of pflCoBrB 476S/C1.1.1 (E2-p7-pNS2-3') (see Fig. 3). For the construction of pflCoBrB/C1.1.1 (Npro'-C-Erns-E1), the NgoMIV/NcoI fragment (nt 2439 to 5534) of pflCoBrB 476S was introduced into pflC1.1.1/CoBrB. SrfI-linearized DNA (250 ng) of full-length plasmids was transfected into SK6.T7a5 cells as described previously (33). Two days after transfection, the medium was harvested and stored at 70°C, and cells were immunostained with monoclonal antibody (MAb) V3 directed against E2 (38). A portion (100 µl) of the medium collected from wells in which E2 expression was detected (virus passage number 1 [p1]) was used to infect confluent monolayers of SK6 cells grown in 2-cm2 tissue culture wells. After 2 days of growth, cells were treated with trypsin, 90% of the cells were transferred to a 25-cm2 tissue culture flask, and 10% of the cells were transferred to a 2-cm2 tissue culture well. After 3 days of growth, wells were immunostained with MAb V3 and flasks were freeze-thawed twice to prepare virus stock p2. The percent inhibition or reduction of infection of SK6 cells with these recombinant viruses by 225 µg of heparin per ml was determined as described below.
Virus isolation from clinical samples. Leukocytes (white blood cells) were isolated from blood treated with EDTA as described recently (6). Isolated leukocytes were resuspended in the same volume of medium (Eagle basal medium containing 10% FBS and antibiotics) as the volume of blood that was used for isolation. Leukocyte suspensions were stored at 70°C. Tissue suspensions (10% [wt/vol]) in Eagle minimal essential medium with Earle salts (EMEM) containing 5% FBS and antibiotics were prepared as described previously (6). These suspensions were stored at 70°C. EDTA-treated blood was frozen at 70°C without further treatment. All leukocyte, tissue, and blood samples, frozen once at 70°C were thawed, divided in aliquots, and stored again at 70°C. In all tests, virus samples that had been freeze-thawed twice were used.
Chemicals, enzymes, and recombinant proteins. Heparin (195 U/mg from porcine intestinal mucosa) and concanavalin A (ConA) were obtained from Sigma, St. Louis, Mo. Lyophilized enzyme was dissolved in storage buffer and stored in aliquots at 70°C as described previously (11). Heparin and ConA were dissolved in EMEM lacking both FBS and antibiotics and stored at 4°C for no longer than 2 weeks.
Inhibition experiments. In the plaque assay, confluent monolayers of SK6 cells, grown in 2-cm2 tissue culture wells, were washed twice with EMEM lacking both FBS and antibiotics. The cells were preincubated at 37°C for 30 min with 150 µl of EMEM with 300 µg of heparin per ml. Fifty microliters of a dilution of a virus stock in EMEM was added to the wells, mixed, and incubated as described above. The concentration used in the text and figures hereafter corresponds with this diluted concentration (225 µg of heparin per ml). After 30 min, the virus was removed, and the wells were washed twice with 0.5 ml of EMEM and supplied with overlay medium (containing methylcellulose). Cells were grown for 18 h at 37°C, and infectious centers (hereafter referred to as plaques) were detected by immune staining with E2-specific MAb V3. Positive plaques in a well were counted with a microscope. When more than 250 plaques per well were present, a minimum of 100 plaques in a fixed area (at a magnification of x40) were counted to calculate the total number of plaques in these wells. Percent inhibition was calculated using the formula 100 x [1 (e/c)], where c is the average number of plaques in duplicate or triplicate wells to which no heparin was added (control well) and e is the average number of plaques in duplicate or triplicate wells to which heparin was added. Percent infection compared to control wells was calculated using the formula 100 x (e/c). For all virus samples, the percentage of inhibition was determined at two different multiplicities of infection (MOIs). For all samples, no seriously different percentages were measured when different amounts of viruses were tested for inhibition by heparin. Therefore, percentages measured at the highest MOI are presented. Relative plaque sizes of viruses were scored in wells to which no heparin was added after 48 h of growth under overlay medium.
Macrophage plaque assay. Infection of alveolar macrophages with CSFV was measured using a modified plaque assay as described by Hulst et al. (12), except no heparin or heparinase I was used in our assay.
ConA inhibition or stimulation assay. Viruses were tested for inhibition or stimulation of infection with different concentrations of ConA as described previously (12).
Ratio of secreted virus to cell-associated virus. SK6 cells grown in 24-well plates were infected with viruses at an MOI of 1. After infection for 30 min, cells were washed two times with complete medium before 1 ml of complete medium was added to each well. At 2 days postinfection (p.i.), the supernatant was collected and stored at 70°C. One milliliter of complete medium was added to the cells in each well before they were freeze-thawed twice at 70°C. Samples were titrated on SK6 cells in 24-well plates in a plaque assay. The ratio of secreted virus to cell-associated virus was determined in a plaque assay and calculated by the following formula: ratio = log10 PFU of cell-associated virus log10 PFU of secreted virus.
Virus neutralization index. The titers of in vitro- or in vivo-generated viruses CoBrB 476S, CoBrB 476S/C1.1.1 (E2-p7-pNS2-3'), CoBrB/C1.1.1 (Npro'-C-Erns-E1), and C1.1.1/CoBrB in the presence or absence of neutralizing antibodies were determined. The virus neutralization index is the log reduction of virus titer, measured in 50% tissue culture infective doses (TCID50s), by neutralizing MAb or polyclonal antibodies (PAbs). The virus neutralization index was determined for MAb V4 and V6 and a serum sample (PabR-RI H) from blood taken at day 21 p.i. from a C1.1.1/CoBrB-infected pig (animal 5021 [see Table 2]). MAb V4 (4 mg/ml) is directed against a conserved epitope in domain A of the E2 protein of CSFV (38) and was used at a dilution of 1:50. MAb V6 (4 mg/ml) is directed against a nonconserved epitope in domain B of CSFV E2 and was previously characterized as a MAb-resistant mutation for MAb V6 (34) and was diluted at a dilution of 1:50. PabR-RI H serum was used at a dilution of 1:1,000.
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| RESULTS |
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Transfection of SrfI-linearized full-length DNAs into SK6.T7 cells (33) yielded the infectious recombinant viruses C1.1.1/CoBrB, CoBrB 476R/C1.1.1, and C1.1.1/CoBrB (Npro'-C-Erns-E1). The transfection medium was used to infect SK6 cells in order to produce p2 virus stocks. The introduced mutations were confirmed by sequencing the amplified DNA of these virus stocks. Virus titers of the p2 stocks of the recombinant viruses were comparable [7.5 x 107 TCID50/ml for C1.1.1/CoBrB, 8 x 107 TCID50/ml for CoBrB 476R/C1.1.1, and 7.3 x 107 TCID50/ml for C1.1.1/CoBrB (Npro'-C-Erns-E1)] to those of the parent viruses C1.1.1 (7.3 x 107 TCID50/ml) and CoBrB ErnsS-RT (7.05 x 107 TCID50/ml). No growth differences on porcine alveolar macrophages or SK6 cells could be detected (results not shown).
Virulence of chimeric viruses derived from C1.1.1 and CoBrB 476R. To analyze the effects of the adaptive amino acid mutations on virulence in pigs, animal experiments were conducted. Pigs were infected intranasally according to the regimen described in Materials and Methods, and results are shown in Table 1.
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In contrast, pigs infected with the virulent CoBrB 476R strain (group B) rapidly developed fever (
40°C) for a period of more than 10 days and symptoms of acute CSF (Table 1). All pigs became seriously ill, as indicated by the lack of appetite, vomiting, dullness, blue ears, and paresis. All animals developed leukopenia and thrombocytopenia. Pig 4062 (group B) developed the chronic form of CSF. No antibodies against E2 were detected in serum samples of this pig, and the pig remained viremic until the end of the trial. After slaughter, viral antigen could also be detected in tissue samples of all pigs. These results clearly showed the avirulent phenotype of C1.1.1 and the virulent phenotype of CoBrB 476R.
Only virus CoBrB 476R/C1.1.1 (group C) exhibited a level of virulence (death, fever, and clinical signs) comparable to that of CoBrB 476R (group B) (Table 1). One pig in group C (pig 4058), however, recovered after having only mild signs of CSF. The presence of antibodies against E2 in serum samples of this pig confirmed infection with CSFV. Virus C1.1.1/CoBrB (group D) caused a mild form of CSF (Table 1). This virus caused fever for several days, and typical signs of CSF were observed in pigs. The pigs of group D recovered rapidly, except for one pig (pig 4056), which died of CSF (day 14) before developing antibodies against E2. Another pig (pig 4054) in this group, which had recovered from CSF, died before the end of the trial for unknown reasons. Virus C1.1.1/CoBrB (Npro'-C-Erns-E1) (group E), carrying only the 2 amino acids in Erns that originate from the virulent CoBrB 476R, did not cause CSF and is avirulent in pigs (Table 1).
Genetic analysis of in vivo-generated virus. Blood samples taken from pigs were used to infect SK6 cells, and after 2 days, RNA was extracted from these cells and used to determine the sequence of the regions containing mutations. For all viruses, the sequence determined matched the original genotype of the virus administered to the pig. These results showed that replication of these recombinant viruses did not induce genetic changes (such as reversion) in the sequenced regions. However, as in a previous study (12), a minority of revertants were found in blood from a pig infected with CoBrB 476R. The reversion consists of an amino acid substitution in Erns at residue position 476 from an Arg to a Ser, which reflects the phenotypical change from an HS-dependent virus to an HS-independent virus in vitro. This change had no effect on virulence in pigs (12). The amino acid 476S is the predominant variant found in blood from a pig infected with Brescia, pig 456610. Therefore, in further experiments, the CoBrB 476S variant was used as the parental virulent virus instead of CoBrB 476R virus.
Construction and characterization of chimeric viruses derived from C1.1.1 and CoBrB 476S with adaptive mutations in Erns and E2.
The only difference between CoBrB 476R/C1.1.1 and C1.1.1/CoBrB (Npro'-C-Erns-E1) is a single amino acid substitution at position 710 (L
H). Because virus CoBrB 476R/C1.1.1 caused CSF (in two of three pigs) and virus C1.1.1/CoBrB (Npro'-C-Erns-E1) was avirulent, the results from animal experiment 1 indicate that a single amino acid substitution at position 710 (L
H) may be involved in the virulence of strain Brescia. Therefore, the possible role of the adaptive amino acid mutation 710L
H in virulence was investigated further.
Therefore, two new full-length cDNAs were constructed. The first full-length cDNA [pflCoBrB 476S/C1.1.1(E2-p7-pNS2-3')] contained the adaptive amino acid mutation at position 710 in the virulent background of CoBrB 476S (Fig. 3). The second full-length cDNA [pflCoBrB/C1.1.1 (Npro'-C-Erns-E1)] contained three adaptive amino acid mutations in Erns (276R, 476R, and 477I) compared to the CoBrB 476S variant. Virus stocks (p2) of CoBrB 476S and CoBrB/C1.1.1 (Npro'-C-Erns-E1) were produced as described above. The introduced mutations were confirmed by sequence analysis of the Erns and E2 genomic regions of these recombinant viruses (p2 stocks).
The Ser
Arg mutation at position 476 in Erns reflects the phenotypical change from an HS-independent virus to an HS-dependent virus. Therefore, virus stocks (p2) of CoBrB 476S, CoBrB 476S/C1.1.1 (E2-p7-pNS2-3'), C1.1.1/CoBrB, and CoBrB/C1.1.1 (Npro'-C-Erns-E1) were tested for inhibition of infection by heparin. Infection of SK6 cells with C1.1.1/CoBrB and CoBrB/C1.1.1 (Npro'-C-Erns-E1) was inhibited by 100% by 225 µg of heparin per ml. In contrast, infection of SK6 cells with CoBrB 476S and CoBrB 476S/C1.1.1 (E2-p7-pNS2-3') was not significantly affected by heparin (Table 2). When SK6 cells were grown under a methylcellulose overlay medium, the diameters of plaques of both CoBrB 476S variants (S-ST) were two to three times larger than those of the plaques from both C1.1.1/CoBrB and CoBrB/C1.1.1 (Npro'-C-Erns-E1) (R-RI). Furthermore, the titers of p2 virus stocks measured on SK6 cells were about 100-fold lower for CoBrB 476S and CoBrB 476S/C1.1.1 (E2-p7-pNS2-3') than for CoBrB/C1.1.1 (Npro'-C-Erns-E1) and C1.1.1/CoBrB (4.5 and 4.0 log10 PFU/ml for the S-ST variants versus 6.7 and 6.3 log10 PFU/ml for the R-RI variants, respectively). These results clearly showed that infection of SK6 cells with the R-RI variants occurred by an HS-dependent mechanism and that infection with S-ST variants occurred by an HS-independent mechanism. The 710L
H mutation in the S-ST and R-RI variants reflects the phenotypical change from nonbinding (710L) to binding (710H) to MAb V6. After immunostaining, expression of CSFV E2 could be detected with MAb V6 in SK6 cells infected with CoBrB 476S/C1.1.1 (E2-p7-pNS2-3') and C1.1.1/CoBrB. In contrast, no E2 was detected with MAb V6 after staining of SK6 cells infected with the virus variants that carried a Leu at position 710, despite the detection of E2 expression in duplicate monolayers after staining with MAb V3 (conserved among pestiviruses).
Virulence of chimeric viruses derived from C1.1.1 and CoBrB 476S with adaptive mutations in Erns and E2.
To analyze the effect of the adaptive 710L
H amino acid mutation on virulence in pigs, animal experiments were conducted. Pigs were infected intranasally according to the regimen described in Materials and Methods, and the results are shown in Table 3.
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40°C) at 2 or 3 days p.i. that lasted for more than 10 days, and showed symptoms of acute CSF (Table 3). The uninfected sentinels that were placed in the stable of the infected animals of groups A and B at 24 h p.i. to allow contact exposure developed fever for a period of more than 10 days and also became seriously ill. All animals developed leukopenia and thrombocytopenia and were viremic from day 4 p.i. (infected pigs) or from day 7 p.i. (sentinels) onwards. Pigs were killed when moribund. After slaughter, viral antigen was detected in tonsil, spleen, kidney, and ileum tissue samples. With the exception of one pig, no E2 antibodies were detected in the serum samples collected from pigs during the trial and when they were slaughtered. Pig 5019, infected with CoBrB 476S/C1.1.1 (E2-p7-pNS2-3') (group B), developed antibodies against E2, and the virus levels in blood samples disappeared after 11 days. After slaughter, viral antigen was detected only in a few crypts of the tonsils and in spleen and ileum tissue samples.
The pigs infected with C1.1.1/CoBrB (group C), in which the adaptive amino acid mutations in Erns (276R, 476R, and 477I) and E2 (710H) were introduced into CoBrB 476R, showed no signs of CSF (Table 3). Only two pigs developed fever for a short period (
3 days). Virus was detected in blood samples of all pigs in this group only at day 7 p.i. (infected pigs) and at day 14 p.i. (sentinel pig). All pigs developed antibodies against E2, and after slaughter, viral antigen was detected only in a few crypts in the tonsils of pigs 5020c and 5023 and the spleen of pig 5022.
Virus CoBrB/C1.1.1 (Npro'-C-Erns-E1) (group D), in which the adaptive amino acid mutations in Erns (276R, 476R, and 477I) were introduced into virulent CoBrB 476S, exhibits the same level of virulence as viruses CoBrB 476S (group A) and CoBrB 476S/C1.1.1 (E2-p7-pNS2-3') (group B), except for a delayed onset of fever and spreading to the sentinel pig (Table 3). In conclusion, the 710L (wild type) or 710H (adaptive mutation in C1.1.1) in CoBrB 476S variants does not seem to affect virulence in pigs, whereas the CoBrB/C1.1.1 (Npro'-C-Erns-E1) variant with 710L is virulent but with a delayed onset of disease. Interestingly, the C1.1.1/CoBrB (group C) variant with 710H does not seem to be virulent; however, very mild symptoms in a few pigs were observed (mild fever and viremia).
Genetic analysis of in vivo-generated viruses. The virus titers in blood samples, taken from pigs, were determined in a plaque assay to determine the plaque size after 2 days of growth under a methylcellulose overlay medium. In wells containing blood samples, taken short before death (14 days p.i.), from pigs infected with CoBrB 476S or CoBrB 476S/C1.1.1 (E2-p7-pNS2-3'), all plaques were large and similar in size to plaques formed by CoBrB 476S or CoBrB 476S/C1.1.1 (E2-p7-pNS2-3') produced in SK6 cells (Table 2). In wells containing blood samples taken from pigs infected with C1.1.1/CoBrB at 7 days p.i. (pig 5021) and 14 days p.i (pig 5020), all plaques were small and similar in size to plaques formed by C1.1.1/CoBrB produced in SK6 cells.
The blood samples from pig 5012 (CoBrB 476S), pig 5016 (CoBrB 476S/C1.1.1 (E2-p7-pNS2-3') and pig 5020 (C1.1.1/CoBrB), which were analyzed above for plaque phenotype, were used to infect SK6 cells. After 2 days of growth under a methylcellulose overlay medium, RNA was extracted from these cells and used to determine the sequences of the Erns, E1, and E2 genes. For all these reisolated viruses, the Erns, E1, and E2 sequences were identical to the sequences of the viruses administered to the pigs. These results showed that replication of CoBrB 476S, CoBrB 476S/C1.1.1 (E2-p7-pNS2-3'), and C1.1.1/CoBrB did not induce genetic changes in the envelope proteins. However, when the virus titers in blood samples from pig 5026 and 5024 infected with CoBrB/C1.1.1 (Npro'-C-Erns-E1), taken on day 11 p.i. and day 18 p.i, respectively, were determined in a plaque assay (with 225 µg of heparin per ml), large plaques were detected (about one large plaque found for every 20 small plaques), whereas CoBrB/C1.1.1 (Npro'-C-Erns-E1) virus produced in SK6 cells formed only small plaques. Large plaques were also detected in blood samples from the two other pigs from this group. However, no large plaques were detected when virus titers of tissue samples, collected from pigs 5024 and 5026 or from the other two pigs, were determined in the presence of heparin. For further analysis, virus isolated from a blood sample (18 days p.i.) from pig 5024 was cloned through endpoint dilution.
To favor infection by virus variants with a large-plaque phenotype, endpoint dilution was performed in medium containing 225 µg of heparin per ml. Of 23 cloned viruses analyzed, one had a large-plaque phenotype. The sequences of the Erns, E1, and E2 genes of this cloned virus, isolated from a blood sample from pig 5024 (virus 5024#18rev), were analyzed, together with a small-plaque-phenotype virus isolated from the same blood sample (virus 5024#17wt). Sequence analysis of the large-plaque-phenotype virus 5024#18rev showed that the Arg at position 476 in the polyprotein was changed to a His. Therefore, in a blood sample from pig 5024, which was infected through contact exposure with pigs infected with CoBrB/C1.1.1 (Npro'-C-Erns-E1), a minority of a large-plaque-phenotype virus variant [CoBrB/C1.1.1 476H (Npro'-C-Erns-E1)] was found. Sequence analysis of the cloned small-plaque-phenotyped virus 5024#17wt showed that this virus was identical to the virus administered to the pig. As observed for the HS-independent CoBrB 476S virus, additional passages in SK6 cells converted this large-plaque-phenotype CoBrB ErnsR-HI E2L variant to a small-plaque variant (results not shown).
Surface properties of in vivo- and in vitro-generated viruses. Virus titers in organ suspensions and blood samples were determined in a plaque assay with and without 225 µg of heparin per ml. In Table 2, the results of these experiments are presented for pigs 5012 (CoBrB 476S), 5016 [CoBrB 476S/C1.1.1 (E2-p7-pNS2-3')], 5020 (C1.1.1/CoBrB), and 5024 [CoBrB/C1.1.1 (Npro'-C-Erns-E1)]. Test results obtained with other samples taken from the pigs of the different groups were not significantly different from those presented here. All clinical samples from pigs 5012 and 5016 (CoBrB 476S viruses) formed only large plaques on SK6 cells, which were similar in size to those for in vitro-produced viruses. Only one blood sample (14 days p.i.) from pig 5020 (C1.1.1/CoBrB) was analyzed, because no virus was isolated from organ samples from this pig and the other pigs in this group. Virus from this blood sample formed only small plaques on SK6 cells. Blood samples, taken from pig 5024, formed small and large plaques. When the virus titer for blood from this pig was determined in the absence of heparin, 1 of 100 plaques was large, representing the revertant of CoBrB/C1.1.1 (Npro'-C-Erns-E1). Virus from the other organ samples of this pig and the SK6 cells infected with CoBrB/C1.1.1 (Npro'-C-Erns-E1) tested formed only small plaques.
Infection of SK6 cells with virus samples taken from pigs 5020 (C1.1.1/CoBrB) and 5024 [CoBrB/C1.1.1 (Npro'-C-Erns-E1)] was almost completely inhibited (95 to 100%) by 225 µg of heparin per ml. Infection of SK6 cells with virus samples from pigs 5012 (CoBrB 476S) and 5016 [CoBrB 476S/C1.1.1 (E2-p7-pNS2-3')] showed 40 to 65% inhibition for CoBrB 476S and 55 to 80% inhibition for CoBrB 476S/C1.1.1 (E2-p7-pNS2-3'), whereas infection with both viruses produced in SK6 cells was not inhibited.
From the in vitro-produced virus and reisolated viruses from clinical samples, virus titers were determined in a plaque assay after growth for 1 day under a methylcellulose overlay medium. Except for virus isolated from the tonsil of pig 5024, lower virus titers were detected in organ and blood samples for both R-RI variants than in organs and blood samples isolated from pigs infected with both S-ST variants, when samples were analyzed in a plaque assay using lung macrophages. Moreover, for C1.1.1/CoBrB, virus was isolated from the blood of pig 5020 only on one day (14 days p.i.). Note that the virus titers of organ samples and for in vitro-produced CoBrB 476S variants are about 10-fold lower in assays using SK6 cells than the titers in assays using macrophages.
Recently, Hulst et al. (12) found that ConA binding to N-linked glycans exposed on the surfaces of virions is responsible for the observed stimulation or inhibition of infection of CSFV strain Brescia. ConA is a lectin that specifically binds with high affinity to terminal mannose (and with less affinity to glucosamine) residues of N-linked glycosyl groups. Most likely, ConA masks negatively or positively charged domains on the surfaces of CSFV particles, leading to either a more (stimulation) or less (inhibition) effective binding of virions to the highly negatively charged sulfate-rich clusters of HS. Therefore, we used ConA binding to demonstrate possible differences in the surface structure of in vitro-generated viruses. Infection on SK6 cells was inhibited for both CoBrB R-RI variants in a dose-dependent manner (Fig. 4). Virus CoBrB/C1.1.1 (Npro'-C-Erns-E1) was inhibited 4-fold by a concentration of 50 µg of ConA, whereas virus C1.1.1/CoBrB was inhibited 15-fold by the same concentration of ConA. Infection on SK6 cells was stimulated for both CoBrB 476S variants. Virus CoBrB 476S was stimulated 1,000-fold by a concentration of 12.5 µg of ConA per ml, whereas virus CoBrB 476S/C1.1.1 (E2-p7-pNS2-3') was stimulated 35-fold by a concentration of 6.25 µg of ConA per ml. The significantly higher stimulation of infection observed for CoBrB 476S compared to that for CoBrB 476S/C1.1.1 (E2-p7-pNS2-3') indicated that these CoBrB 476S genotypes have different surface properties, although the only difference is the L
H mutation at position 710. In the same way, but to a lesser extent, a slightly higher inhibition of infection was observed for CoBrB/C1.1.1 (Npro'-C-Erns-E1) than for C1.1.1/CoBrB.
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L mutation is also important for recognition in the whole spectrum of antibodies.
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L mutation, even clearer results were obtained when the serum PabR-RI H was used to determine neutralizing indices for in vivo-generated viruses. Serum from a C1.1.1/CoBr-infected pig was able to neutralize virus in blood from pig 5016 [CoBrB 476S/C1.1.1 (E2-p7-pNS2-3')] by 5.7 log units, whereas low neutralizing indices were obtained for pig 5012 (CoBrB 476S) and pig 5020 [CoBrB/C1.1.1 (Npro'-C-Erns-E1)]. These results suggest that besides the importance of 710H as an epitope for neutralizing antibodies, this amino acid residue is also crucial for the structure of E2. | DISCUSSION |
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In the first animal experiment, we focused on these nine adaptive amino acid mutations by making chimeric C1.1.1/CoBrB 476R virus variants, in which either the structural or nonstructural region was exchanged. A minor role for the adaptive amino acid mutations in the nonstructural region on virulence was observed, although some interesting amino acid changes are present. Amino acid 1971P of C1.1.1 is not located in any of the known protease/ATPase/helicase motifs of NS3 (8), but adaptive amino acid mutation 1915S is located 2 amino acids downstream of the DEYH sequence (also known as the Walker motif or motif II [36]), one of the seven conserved motifs that are characteristic for RNA helicases of the DExH type. Grassmann et al. (8) showed that mutations of the third position in the DEYH motif permitted replication, although at a lower level than that of wild-type RNA. In vitro studies with the purified mutant NS3 proteins revealed a significantly impaired helicase activity for the motif II substitutions. Although the adaptive amino acid mutation 1915S in not found in other virulent and avirulent CSFV strains, further in vitro studies should be performed to determine the influence of this mutation in the vicinity of the Walker motif on helicase or nucleotide triphophatase activity. The same holds true for the adaptive amino acid mutations 3419I and 3858A in NS5b, which are not located in any of the known RNA-dependent RNA polymerase motifs (17). These amino acids and 2638V in NS4b and 2846C in NS5a may influence virulence by affecting the stability of NS2-3, NS4a, NS4b, NS5a, and NS5b in the replication complex. Mittelholzer et al. (21) found no correlation between RNA levels in vitro and virulence in a study of CSFV strains with different degrees of virulence. Their results suggest that mutations located in the nonstructural region that are involved in replication (such as NS3 and NS5b) are not determinants for virulence in the CSFV strains they tested.
The first animal experiment revealed a possible role for the His residue at position 710 in the ORF of CSFV, since virus CoBrB 476R/C1.1.1 was moderately virulent and C1.1.1/CoBrB (Npro'-C-Erns-E1) was not virulent. Further studies showed that the 710H by itself was not enough to reduce virulence in pigs, but together with adaptive amino acid changes in Erns (276R, 476R, and 477I), it did reduce virulence. The 710L
H mutation has already been characterized as a MAb-resistant mutation for MAb V6 (MAb V6 epitope located in the nonconserved B domain of E2) (34). Besides an important neutralization site, it also reflects a structural change in E2 that is probably crucial for the function(s) of E2 in vivo.
The most dramatic change in Erns is the 476S
R mutation, which reflects the adaptation to SK6 cells from an HS-independent virus to an HS-dependent virus (11). Binding of baculovirus-expressed Erns recombinant proteins (S-ST, S-RT, R-RI, S-RI, R-RT, and R-ST, representing the amino acid combinations at positions 276, 476, and 477 in Erns) to immobilized heparin-HS-type polysaccharide chains by heparin-Sepharose chromatography showed that an Arg at position 476 increased the affinity of heparin significantly. Furthermore, 276Arg in the N terminus of Erns and 477Ile, which is involved in the recognition of antigenic sites (43), adjacent to 467Arg in Erns in R-RI further increased the affinity of binding of Erns to heparin (M. Hulst, personal communication). Amino acid 276 (S for CoBrB and R for C1.1.1) is located in the N terminus of Erns, upstream of the first RNase domain of Erns (9). The role of this adaptive amino acid residue 276R in Erns, which is conserved among virulent and avirulent CSFV strains and which eliminates a potential N-linked glycosylation site (NXS) (11, 16), was not investigated in vivo. However, studies with baculovirus-expressed Erns recombinant proteins (S-ST, S-RT, R-RI, S-RI, R-RT, and R-ST) revealed that this potential glycosylation site was not glycosylated in insect cells (M. Hulst, personal communication).
For many viruses (reference 29 and references therein), HS-mediated entry is the first step in the infection process, followed by interaction of viral proteins with other cellular mediators (secondary receptors) for adhesion and penetration. Moreover, for foot-and-mouth disease virus, simian virus, Murray Valley encephalitis virus, and Japanese encephalitis virus, it was shown that HS-dependent virus variants, selected in cell culture, are less virulent than their HS-independent counterparts. It was speculated that HS binding in vivo is a disadvantage for the virus, at least for those that spread through the circulation system and do not spread by cell-to-cell contact. Culture-adapted virus variants are rapidly cleared by tissue HS, which is sulfated to a much higher extent than endothelial HS is (29). However, it was shown for CSFV that the Ser-to-Arg change, from an HS-independent virus to an HS-dependent virus, did not reduce virulence in vivo (12). Our results with the R-RI variants, with a relatively high affinity for heparin compared to that of CoBrB 476S, indicate that spreading of these viruses through the circulation system was reduced. A delayed onset of disease was observed for the animals infected with the CoBrB/C1.1.1 (Npro'-C-Erns-E1) virus, and the spread to a contact-exposed animal was also delayed compared to the CoBrB 476S virus. This would indeed favor the hypothesis that HS binding in vivo is a disadvantage for the virus. However, for CSFV, it was shown that an HS-independent virus generated in vivo is still able to use HS as an attachment site for primary swine kidney cells (12), probably due to heterogeneity in surface properties of virus particles. Maybe the CoBrB 476S variant uses specific HS motifs displayed on specific host cells or more specific receptors are involved, leading to selection or infection of specific host cells. Therefore, even if HS does not serve as an entrance gate, this may direct the viral pathogen to certain sites where the preferential HS features are displaced, and this can make the difference between easy or more difficult access.
Growth of the HS-dependent variant and CoBrB/C1.1.1 (Npro'-C-Erns-E1) in pigs yielded revertants with a characteristic large-plaque phenotype. However, the ratio of revertant to nonrevertant phenotypes remained low (<1% on the basis of plaque size) from virus from blood samples, indicating that the pathogenesis in these animals was due to growth of the HS-dependent virus rather than that of the revertant virus. Moreover, nonrevertant viruses were also found predominantly in blood samples from the sentinel pig (ratio of revertant to nonrevertant phenotypes of <1% on the basis of plaque phenotype), indicating that growth of this virus was responsible for the pathogenesis in this pig. Revertants with an amino acid change R
H at position 476 in Erns were isolated from blood samples from infected pigs, whereas no revertants were isolated from tonsil, spleen, kidney, and ileum tissue samples. This reversion reflected the change from an HS-dependent virus to an HS-independent virus. This phenomenon was already observed in a previous study (12), in which a low level of revertants with a large-plaque phenotype was found in blood samples from one of three pigs infected with CoBrB 476R. Analysis of this revertant virus revealed 467Ser instead of 467Arg. This change had no effect on the virulence of this virus in pigs.
The results presented here suggest that the attenuation of cell-adapted CSFV strain Brescia is correlated with the acquisition of positively charged amino acid residues in glycoproteins Erns and E2. The ratio of secreted virus particles (cell-free) to cell-associated virus particles in SK6 cells correlated with the overall (or local) charge of the virions (from positive to negative, R-RI H [0.55], R-RI L [0.6], S-ST H [1.3] and S-ST L [1.7] [ratios shown in brackets]). In contrast to the results of Mittelholzer et al. (21), these results suggested that reduced particle release is not always correlated with the virulence of CSFV strains. According to our standards, CoBrB/C1.1.1 (Npro'-C-Erns-E1) could be classified as virulent with delayed onset of disease compared to highly virulent CoBrB 476S, whereas a reduced particle release on SK6 cells was observed. Inhibition or stimulation of infection of CSFV variants on SK6 cells with ConA also correlated with the overall (or local) charge of the virions (from positive to negative, R-RI H, R-RI L, S-ST H, and S-ST L). The observed differences in neutralizing indices caused by the adaptive amino acid change (L
H) at position 710 in E2 suggest that this mutation plays a crucial role in the structure of E2. Structural changes and/or the acquisition of positively charged amino acids of cell-adapted CSFV variants might have an synergistic effect with the adaptive mutations in Erns and E2, because of the recently shown interaction of Erns and E2 in the virion through a noncovalent interaction (18).
The virulence of CSFV seems to be determined in a rather complex manner. First, the acquisition of positively charged amino acids in Erns, which lead to an HS-independent virus, is not enough to reduce virulence in pigs. HS binding in vivo is considered to be a disadvantage for the virus, but earlier results indicated that this is not completely true for CSFV (12). However, the disease spread less in pigs infected with CoBrB R-RI variants (HS+) than in pigs infected with CoBrB S-ST variants (HS). This suggests that HS binding in vivo does have an effect on virulence. Second, the 710L
H mutation in E2 leads to reduced virulence only in combination with the adaptive mutations in Erns. The mechanism by which this mutation affects virulence is not clear. As discussed before, the overall (or local) positive charge of the virion seems to be correlated with attenuation of CSFV strain Brescia in vivo. Thus, the mutation in E2 might contribute to the positive charge of the virion and reduced spread in vivo. Another mechanism by which virulence might be affected is reduced spread of virus in vivo in combination with changes in binding and/or penetration of virus in host membranes leading to tissue tropism. Both Erns and E2 are involved in the infection process of CSFV. Erns is involved in HS-mediated entry, which is the first step in the infection process, followed by a possible interaction of E2 with other secondary receptors for adhesion and penetration. Both processes could be disturbed by the adaptive amino acid mutations in Erns and E2 leading to tissue tropism.
Detailed studies of processing and surface structure are needed to obtain insight into how CSFV binds to and associates with host cells. In addition, more-detailed studies on the interaction or replication of CSFV, either cell adapted or in vivo generated, with specific target host cells might elucidate more genetic determinants of virulence for CSFV.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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Present address: Boyce Thompson Institute for Plant Research, Ithaca, NY. ![]()
Present address: Intervet International B.V., Boxmeer, The Netherlands. ![]()
| REFERENCES |
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