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Journal of Virology, May 2004, p. 4976-4982, Vol. 78, No. 10
0022-538X/04/$08.00+0 DOI: 10.1128/JVI.78.10.4976-4982.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Departamentos de Fitopatologia,1 e Biologia Celular, Universidade de Brasília, Brasília-DF, Brazil 70910,2 Centro Brasileiro de Hortaliças-Empresa Brasileira de Pesquisa Agropecuária, CNPH-EMBRAPA, Brasília-DF, Brazil 703593
Received 17 December 2003/ Accepted 25 January 2004
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TSWV has four structural proteins (L, N, G1, and G2) and two nonstructural proteins (NSm and NSs). Both nonstructural proteins are detected in infected insect cells or tissues and have served as markers of virus infection in the WFT (30, 42, 47). TSWV infection in the WFT occurs after feeding on infected plants during the larval stages (49). Only WFT larvae are susceptible to TSWV infection and subsequent acquisition (uptake and ability to transmit the virus). The virus seems to invade the insect body via interaction of the viral glycoprotein(s), possibly G1, with a 50-kDa cellular receptor in the WFT midgut (32, 49). WFT adults are resistant to TSWV infection and consequently are refractory to virus acquisition owing to an unknown midgut barrier (35, 49).
Shortly after feeding on infected plants, nonstructural viral proteins (NSm and NSs) can be detected in the WFT, first in midgut epithelial cells and then in muscle cells surrounding the alimentary canal, followed by the putative ligaments joining the midgut to the salivary gland and, finally, the insect salivary glands (35, 36, 49). After infection of the salivary glands, TSWV can be inoculated into new host plants during WFT feeding by egestion of insect saliva into the plant tissue, completing the transmission cycle. TSWV infection is therefore a key determinant in successful acquisition and vectoring by the WFT (49). The TSWV-WFT relationship is defined as circulative-propagative, meaning that the virus circulates in several of the vector organs and replicates in its tissues (49).
It has long been known that insects lack an adaptive immune system, and therefore their innate immune system is solely responsible for their remarkable resistance to microbial infections (2, 21, 24). Activation of the insect innate system, like that of its mammalian counterpart, involves the recognition of microbial components by several types of cell surface receptors, including Toll-like receptors, which trigger the expression of an array of antimicrobial peptides (synthesized in the fat body), as well as initiate a variety of proteolytic cascades (2, 21).
The Drosophila response to bacterial and fungal infections is relatively well understood at the molecular level (21, 24). However, the immune response of insects to viral infections is poorly understood. It has been reported that cells of Helicoverpa zea larvae infected with Autographa californica polyhedrovirus are encapsulated by hemocytes and subsequently cleared, demonstrating that the insect cellular immune response is effective against viral pathogens (51). Only two virus-induced molecules, pherokine-2 and -3, were identified in Drosophila after intrathoracic injection of the Drosophila C virus (39). A lipase showing antiviral activity against Bombyx mori polyhedrovirus was purified from the digestive juice of B. mori larvae and detected into the insect midgut, the site of virus entry (37). In addition, it has been shown that Flock house virus is both an initiator and a target of RNA silencing in Drosophila host cells (27) and that several members of the baculovirus family of insect viruses are able to induce apoptosis during infection, resulting in limited viral replication (10).
We hypothesized that TSWV triggers an immune response in WFT tissues. To test this hypothesis, we constructed subtractive cDNA libraries from infected versus noninfected WFT larvae and used them to probe WFT DNA macroarrays. The data presented here indicate that TSWV elicits an immune response in the WFT and that this immune response involves, for example, the transcriptional upregulation of antimicrobial proteins (such as defensins) and other immune system-related proteins (such as Toll, Toll-like receptors, lectins, and complement-like protein). These findings may lead to a better understanding of insects' immune responses against viruses and, one hopes, a better understanding of virus-vector interactions and may help in the future development of novel antiviral strategies for insect-transmitted plant and animal viruses.
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Subtractive cDNA libraries. Subtractive cDNA libraries were prepared as described previously (7, 8, 25, 28, 41), with some modifications. Total RNA was purified with a Total RNA Purification kit (Invitrogen) by using 200 mg of WFT larvae at the first and second instars (12 and 96 h old). Samples from the first instar were used as driver RNA (noninfected), and samples from the second instar were used as tester RNA (TSWV infected or from the WFT fed on TMV-infected plants). The time delay (from 12 to 96 h) was determined empirically, since this is the first study of the WFT immune system, and was used in an attempt to ensure the detection of eventual changes in gene expression. In addition, 96-h-old larvae are morphologically distinct from 12-h-old larvae (second instar versus first instar), which facilitates their visual separation.
Samples of WFT poly(A)+ RNA were obtained with oligo(dT)25-Dynabeads (Dynal). Independent driver RNA samples were obtained from (i) non-TSWV-infected WFT fed on healthy D. stramonium, (ii) non-TSWV-infected WFT fed on TMV-infected D. stramonium, and (iii) TSWV-infected WFT fed on TSWV-infected D. stramonium (infections were checked by reverse transcription [RT]-PCR; data not shown). Dynabead complexes were washed twice in RT buffer (50 mM Tris-HCl [pH 8], 75 mM KCl, 3 mM MgCl2). First-strand cDNA synthesis [with poly(A)+ RNA from noninfected WFT] was performed directly on the magnetic beads with oligo(dT)25-Dynabeads as primers and the cDNA Synthesis System Plus kit (Amersham). After first-strand cDNA synthesis, poly(A)+ RNA was removed by washing samples (three times) with EDTA at 95°C for 3 min each time. First-strand cDNA-Dynabead complexes were captured with a magnet and resuspended in hybridization buffer (120 mM NaH2PO4 [pH 6.8], 820 mM NaCl, 1 mM EDTA, 0.1% sodium dodecyl sulfate [SDS]). Poly(A)+ RNA (tester) isolated from 96-h-old TSWV-infected WFT larvae was then added (or RNA from WFT fed on TMV-infected plants or from WFT fed on healthy plants). The mixture was denatured for 3 min at 95°C and incubated at 65°C for 24 h in a rotary hybridization oven (Affymetrix). The poly(A)+ RNA-cDNA-Dynabead complexes were captured by magnetic separation and separated from the supernatant containing nonhybridized poly(A)+ RNA. The supernatants were subjected to a second hybridization reaction with the recycled cDNA-Dynabeads. Magnetic beads were recycled by two washes in buffer A (0.15 M LiCl, 0.01 M Tris-HCl [pH 8], 1 mM EDTA). This hybridization step was repeated three more times. The poly(A)+ RNA population present in the last supernatant was captured with fresh oligo(dT)25-Dynabeads and eluted three times in water at 55°C. First- and second-strand cDNA syntheses, with the final poly(A)+ RNA samples, were carried out with the cDNA Synthesis System Plus kit (Amersham).
In this way, four main subtracted libraries were obtained. Library 1 (noninfected; negative control) consisted of tester RNA from 96-h-old noninfected WFT added to cDNA derived from driver RNA from 12-h-old noninfected WFT (fed on healthy D. stramonium). Library 2 (noninfected but exposed to TMV; negative control) consisted of tester RNA from 96-h-old noninfected WFT added to cDNA derived from driver RNA from 12-h-old noninfected WFT (fed on TMV-infected D. stramonium). Library 3 (TSWV infected) consisted of tester RNA from 96-h-old TSWV-infected WFT added to cDNA from driver RNA from 12-h-old noninfected WFT (fed on TSWV-infected D. stramonium). Library 4 (double negative control) consisted of an additional negative control library was also used in preliminary experiments and was made with both tester and driver RNAs collected from 12-h-old WFT larvae.
DNA macroarrays.
WFT DNA macroarrays were prepared with plates containing 72 by 96 wells and positively charged nylon membranes (Amersham) measuring 7 by 11 cm with Q-Bot (Genetix) by following the manufacturer's instructions. In each membrane, 6,912 WFT PCR products were spotted in the central area of the nylon membranes. Ten membranes were used in three independent experiments, with a total of 69,120 clones screened in each experiment. To manufacture the DNA macroarrays, two independent WFT cDNA lambda libraries were combined: (i) a larval WFT cDNA lambda library obtained previously with the Lambda-ZAP II kit (Stratagene) as described before (31) and (ii) a newly obtained adult WFT cDNA lambda library (Lambda-ZAP II kit). The resultant combined lambda library was used to obtain a plasmid library with the ExAssist interference-resistant helper phage kit (Stratagene) by mass excision in accordance with the manufacturer's instructions. The plasmid library was used to transform Escherichia coli strain SOLR (Stratagene), which was plated in master plates (20 by 100 mm). Bacterial cultures were produced in plates with 72 by 96 wells, from the master plates, with the Q-Bot colony-picking function. PCR products were obtained in plates consisting of 72 by 96 wells by robotically dipping bacterial cultures in 25 µl of PCR solution (20 pmol each of the T3 and T7 primers, 4 mM MgCl2, 1.5 mM deoxynucleoside triphosphates, 1.25 µl of dimethyl sulfoxide, 0.1 U of Taq polymerase [Invitrogen]) with PCR System 9700 (Applied Biosystems). The following cycling parameters were used: 95°C for 5 min; 30 cycles of 95°C for 1 min, 55°C for 2 min, and 68°C for 4 min; and 68°C for 10 min. Twelve microliters of the PCR products obtained was then spotted onto each nylon membrane by using the Q-Bot grinding function. Membranes were incubated in denaturation buffer (0.5 N NaOH, 1.5 M NaCl) for 2 h, neutralized for 30 min in 0.5 M Tris-Cl (pH 7.5), rinsed in 2x SSC (1x SSC is 0.15 M NaCl plus 0.015 M sodium citrate) for 2 h, UV cross-linked for 15 min at 120,000 µJ/cm2 (Stratalinker; Stratagene), and hybridized with [
-32P]rCTP-labeled riboprobes prepared from the subtractive libraries obtained. On each membrane, a WFT
-actin PCR product, from a clone obtained with
-actin primers designed from Drosophila sequences, was spotted for normalization (preliminary experiments showed no
-actin activation; data not shown). Each plate (72 by 96 wells) received a letter code (AA to AZ), and individual wells received four-digit numbers.
Hybridization. Riboprobes were prepared from the four subtractive libraries obtained and were synthesized by random priming with T7 polymerase (Riboprobe System; Promega) in accordance with the manufacturer's instructions. The riboprobes obtained showed an activity of 1 x 107 to 6 x 107 cpm/µg of DNA. Membranes were prehybridized in 4x SSC-10x Denhardt's solution-50% formamide-0.1% SDS-50 mM Na2HPO4 (pH 7.2)-1 mM EDTA-100 µg of sheared herring sperm DNA (Invitrogen) per ml at 42°C for 2 h. Riboprobe solution was added at 5 x 106 cpm/ml, and the mixture was incubated overnight at 42°C. Membranes were washed twice at 65°C for 30 min each time in 2x SSC-0.1% SDS. Four different riboprobes were hybridized to each group of 10 membranes in each experiment, for a total of 40 membranes per experiment. Riboprobes were made from libraries 1, 2, 3, and 4 (described above).
Image acquisition and analysis.
After hybridization, membranes were exposed to a Storm 860 PhosphoImager screen (Amersham Pharmacia) for up to 12 h and scanned with Storm 860 software. Data were obtained as a list of integrated intensity values and array positions for each spot and saved in a spreadsheet (Microsoft Excel) to which the intensity values of each clone was linked. The intensity of the signal was first corrected by the average signals of three blank spots on the membrane where no PCR samples were applied. The corrected hybridization signals were normalized with an
-actin PCR product spotted on each corner of each membrane as described previously (25). The arrays were not used for absolute quantitative analysis, the relative hybridization levels were used as an indicator of differential expression. Only those clones that generated hybridization levels twofold or higher when probed with library 3 compared to negative control library 1 in all three independent experiments were selected for sequencing.
Sequence analysis. Sequencing reactions were performed with the T7 and T3 universal primers, with plasmids purified from the bacterial culture plates, after clone selection. Sequences were identified by a BLASTn search at the National Center for Biotechnology Information homepage (http://www.ncbi.nlm.nih.gov). Genes were considered homologues when queries showed more than 60% nucleotide identity to known genes.
Northern analysis.
Five micrograms of each RNA sample collected from WFT fed on TSWV-infected D. stramonium plants for 0, 2, 4, 6, 12, 24, 96, or 240 h (time of virus exposure) was loaded into a 0.8% agarose formaldehyde gel, transferred overnight to a nylon membrane (Amersham), baked at 75°C for 1 h, and hybridized overnight at 65°C, after 3 h of preincubation in hybridization buffer, as described above. Riboprobes were synthesized from selected clones with the Riboprobe System (Promega), as described above, with 50 mCi of [
-32P]rCTP (3,000 Ci/mM). Membranes were washed three times as described above and analyzed with a Storm 860 PhosphorImager (Amersham Pharmacia).
RT-PCR. Viral infections of both plants and insects were assayed by RT-PCR, as described before (30), with primers specific to the viral complementary M (medium) RNA containing the NSm sequence (5' GCCATTGTTCTCCGGAAGATTCAG 3' and 5' CAACCCTAGTTAATTTCGTTGGTG 3'). For the WFT, about 100 dissected guts were used as the RNA source and RNA was extracted with a QIAshredder and RNeasy (Qiagen). Plant RNA samples were extracted with RNeasy (Qiagen). After feeding on TSWV-infected plants for the indicated time, WFT larvae were starved for 24 h prior to RT-PCR to avoid the detection of virus particles simply carried in WFT guts.
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View this table: [in a new window] |
TABLE 1. WFT immune system-related genes activated after TSWV infection
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RNA from WFT fed on TMV-infected plants was used to make an additional negative control subtracted library (library 2) because TMV does not infect the WFT; however, whether the presence of noninfecting viral particles would trigger a nonspecific immune response was unknown. This library also did not result in the detection of genes with known immune functions, and the same genes described above were detected (with putative developmental functions) (data not shown).
In addition, when RNA samples from the first instar were extracted from RNA samples also from the first instar (library 4, described above, as an additional negative control), no signals were detected, indicating that the subtraction method was efficient (data not shown).
Table 1 shows that WFT genes activated after TSWV infection included homologues of genes with reported or putative immune functions. These genes can be divided into the following categories: (i) those encoding proteins putatively involved in recognition and phagocytosis of insect-invading microorganisms, such as lectins (13, 20, 24, 45), Jnk kinase (33), and complement-like proteins (13, 24); (ii) those encoding Toll-like surface receptors (23), responsible for the activation of signal transduction pathways that trigger the innate immune response, such as Toll-3, which has been reported to participate in double-stranded RNA recognition in mammalian cells (1), and MyD88, which is required in the immune response against fungi and bacteria (44); (iii) those encoding proteins that participate in the subsequent Toll signaling cascade, such as Relish, 18w, Ikk
, Spatzle, and Cactus (23, 26, 38); (iv) those encoding antimicrobial peptides, such as defensins A and D, cecropin B, and lysozyme C, a family whose members have been reported in immune responses against viruses, bacteria, and fungi (21); (v) those encoding cytokines that have potential roles in activating humoral responses, such as activin (9, 24, 40); (vi) those encoding members of the immunoglobulin superfamily of proteins, such as hemolin (43); (vii) those encoding storage proteins, such as larval serum protein 1ß, a protein similar to arylphorins and arylphorin receptors, whose specific immune function is unknown (5), and (viii) those encoding proteases, whose general role in insects' innate response, as well as many other functions, has also been reported (9, 21, 24, 51).
Figure 1 shows DNA macroarray hybridization results in selected areas of nylon membranes with some of the selected genes (those encoding defensin D, hemolin, Ikk kinase, and complement-like TEP1).
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FIG. 1. Selected areas of WFT DNA macroarrays after hybridization with riboprobes derived from noninfected versus TSWV-infected subtracted cDNA libraries. Selected regions of nylon membranes show the detection of defensin D (A), hemolin (B), Ikk kinase (C), and complement-like TEP-1 (D) (arrows).
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-actin probe was used as a negative and loading control (Fig. 2A), and the
-actin signal was used to normalize the data showed in Fig. 2B.
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FIG. 2. (A) Northern analysis of activated immune-related WFT genes after TSWV infection. Riboprobes are indicated at the left. Samples were collected from 0 to 240 hpe, meaning time feeding on TSWV-infected plants. Samples from 0 to 24 hpe represent insects at the first-instar larval stage, those from 96 hpe represent the second-instar larval stage, and those from 240 hpe represent the adult stage. Actin was used as a negative control for activation and as a loading control. (B) Graphic representation of the data showed in panel A. Relative signal intensity is the signal intensity of each gene in the Northern blot normalized to that of the corresponding actin signal, measured with a Storm 860 PhosphoImager.
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FIG. 3. RT-PCR of dissected WFT guts with primers specific to the TSWV complementary M RNA. Samples were collected from 0 to 240 hpe, meaning time feeding on TSWV-infected plants.
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Of the 51 genes activated after TSWV infection (Table 1), 24 were homologous to genes with no reported immune function, such as encoding DNA repair-related proteins, transcription factors, cuticle and structural proteins, DNA replication factors, and neuropeptides and insect hormones, and some showed no significant homology to genes previously described in the GenBank database (data not shown). The detection of the transcriptional upregulation of these genes probably represents WFT larval development from the first instar to the second instar, since the same genes, and similar genes in the same categories, were also detected when the negative control riboprobes were used (data not shown), and similar genes have also been detected in mosquito larval-development studies (25). The detection of these genes was possible because the driver RNA sample was collected from 12-h-old WFT larvae and the tester RNA sample was collected from 96-h-old larvae. Furthermore, the simple presence of noninfecting virus particles in the insect gut, in this case TMV, was not enough to trigger any immune response (data not shown).
Other studies, involving genomic-scale approaches to evaluate immune responses against viral infections, have used mostly cDNA microarrays (11, 16, 18, 34, 46, 54). The method used here, which combined subtracted cDNA libraries and DNA macroarrays, is simple, practical, and less expensive than microarrays. However, it is labor intensive and less sensitive in terms of signal intensity, the number of signals detected, and of course the number of genes that can be analyzed at once, which explains the relatively low number of genes detected in this study (around 50) compared to those detected with microarrays (often hundreds). In addition, because of the library construction strategy used here, detection of downregulated genes was not possible. However, the method could be particularly applicable to other insect-transmitted plant viruses that also infect their vectors, such as rhabdoviruses (22), and to human and animal mosquito-transmitted bunyaviruses (6, 15).
The Northern analysis shown in Fig. 2A and B corroborated the use of subtractive libraries with DNA macroarrays and illustrates a time frame similar to those previously reported for fungal and bacterial infections in Drosophila (13, 17). It has been found in Drosophila that defensins, Toll pathway genes, and complement genes can show sustained activation even at 96 h postinfection (13). Here, most genes showed higher expression even at the adult stage (Fig. 2A, 240 hpe).
TSWV replication in and infection of WFT guts, at least with respect to the presence of viral complementary M RNA containing the NSm sequence, was detected by RT-PCR at 4 h after feeding on TSWV-infected plants or at 4 hpe (Fig. 3). TSWV infection after only 3 h of feeding on infected plants has been reported previously (35). Also, it has been shown that the WFT midgut is the primary site of TSWV infection (47, 48, 49). Since WFT individuals were starved for 24 h before RNA sampling, the results indicate the detection of TSWV RNA inside the WFT gut tissues, not the detection of viral particles simply carried in the lumen of the WFT gut.
Figures 2 and 3 show a correlation between the detection of viral cRNA, which indicates virus replication and infection, and the activation of four of the selected defense genes, i.e., those that encode lectin, defensin D, cecropin B, and trypsin (Fig. 2B and 3). However, the activation of another four of the selected genes did not show a correlation with the detection of viral cRNA (those that encode complement, Relish, Toll-3, and defensin A). Apparent early defensin A activation may be related to the recognition of virus particles and/or products before any viral replication event takes place. Apparent late activation of complement, Relish, and Toll-3 may be related to insect immune system regulation and/or may be unnecessary before viral products reach a certain level in WFT tissues.
Defensins have been reported in antiviral immune responses in mammalian cells against adenovirus (4), rhinovirus (14), and retrovirus (50, 53). We are currently investigating if the defensins detected in this study have any anti-TSWV activity.
Another plant pathogen, the bacterium Erwinia carotovora, has been shown to activate the immune system of Drosophila melanogaster, its eventual insect vector (3). To our knowledge, this is the first report of the activation of an insect vector immune system by a virus and may help in the future development of novel antiviral strategies. An example is the expression of insect antiviral proteins, such as defensins, in transgenic plants.
This research was supported by the Conselho Nacional de Desenvolvimento Científico e Tecnológico-CNPQ, Centro Brasileiro-Argentino de Biotecnologia-CBAB and by the Decanato de Pesquisa e Pós-Graduação-DPP, Universidade de Brasília (R.B.M.).
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B-dependent gene networks in respiratory syncytial virus-infected cells. J. Virol. 76:6800-6814.
-defensin 1, 2, and 3 to the anti-HIV-1 activity of CD8 antiviral factor. Science 298:995-1000.
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