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Journal of Virology, January 2004, p. 257-265, Vol. 78, No. 1
0022-538X/04/$08.00+0 DOI: 10.1128/JVI.78.1.257-265.2004
Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892,1 Graduate Program of the Department of Genetics, The George Washington University, Washington, D.C. 200522
Received 16 July 2003/ Accepted 12 September 2003
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The F10L ORF encodes a protein kinase that is incorporated into virus particles (10) and phosphorylates or regulates the phosphorylation of serine, threonine, and tyrosine residues of the A17 and A14 membrane components (1, 4, 22). Taken together, the data suggest a role for the F10 kinase in morphogenesis that is mediated at least in part by phosphorylation of A17. Nevertheless, there has been no study demonstrating that the role of F10 in assembly is dependent on its catalytic activity. The need for such experiments is underscored by our recent finding that F10 is part of a complex that contains several other proteins that are likely to have structural roles in assembly (18). In addition, the data supporting the role of the F10 kinase in membrane formation have been derived solely from temperature-sensitive (ts) mutants. Although ts mutants have provided valuable insights into the mechanisms employed in various stages of the VV replication cycle, the phenotype can be distorted because of interactions of improperly folded proteins or secondary effects due to the higher than normal temperature. This is especially true for protein kinases, since the defect at the nonpermissive temperature could be derived from the thermolability of an unphosphorylated acceptor protein, in addition to that of the kinase itself, as has been proposed for the VV B1 protein kinase by Rempel and Traktman (12). It can be helpful, therefore, to characterize additional types of conditional lethal mutants. Here we describe the construction and assembly defect of a conditional lethal VV mutant in which expression of F10 is repressed in the absence of a specific inducer. We used the mutant in transcomplementation assays to demonstrate that point mutations of conserved kinase domains in F10 abolished catalytic activity and prevented phosphorylation of A17 and virus morphogenesis.
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Cells and viruses. VV (WR strain) and the recombinant virus vT7LacOI (24) were propagated in HeLa cells as previously described (6). The newly constructed vF10V5i was propagated in the presence of 50 µM isopropyl-ß-D-thiogalactopyranoside (IPTG) and 2.5% fetal bovine serum. Plaque assays were performed on BS-C-1 cell monolayers in six-well tissue culture plates with 0.5% methylcellulose as described previously (7).
Antibodies. Antiserum against a peptide corresponding to amino acids 5 to 20 of F10 followed by a cysteine residue (NDSSPEYQWMSPHRLSC) was produced in rabbits (Covance Research Products, Denver, Pa). Anti-A14, anti-H3, and anti-A17N antisera were used as previously described (1, 3). The murine monoclonal antibody (MAb) MHA.11 (Covance) recognizes the 9-amino-acid influenza virus hemagglutinin (HA) epitope tag and the murine MAb anti-V5 (Invitrogen, Carlsbad, Calif.) recognizes the 14-amino-acid sequence found in the P and V proteins of the paramyxovirus simian virus 5. Rabbit polyclonal anti-phosphotyrosine (anti-pTyr) and anti-phosphothreonine (anti-pThr) antisera were purchased from Zymed Laboratories (South San Francisco, Calif.).
Western blot analysis. Proteins from infected cell lysates or purified virions were resolved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), electrophoretically transferred to a nitrocellulose membrane, blocked overnight with either 10% nonfat dried milk or 5% bovine serum albumin, and probed with rabbit polyclonal antibody or mouse MAb followed by anti-rabbit or anti-mouse immunoglobulin G conjugated to horseradish peroxidase, essentially as described previously (20). Bound immunoglobulin G was detected with the SuperSignal West Pico chemiluminescent substrate (Pierce, Rockford, Ill.).
Plasmid and recombinant virus construction. The pVOTE.2F10V5 plasmid, containing the F10L ORF modified by silent mutations and a V5 tag at the C terminus flanked by NdeI and SacII restriction sites at the 5' and 3' ends, respectively, was constructed by standard PCR methods and inserted into pVOTE.2 (24). The F10 knockout plasmid contained (i) a complete copy of the ORF encoding the enhanced green fluorescent protein (GFP) under the control of the VV F10 promoter and (ii) flanking sequences of the F10L ORF comprising a portion of the F11L ORF (right flank) and a complete copy of the F9L ORF plus a portion of the F8L ORF (left flank). The pP11F10HA-WT plasmid, containing a copy of the F10L ORF under the control of the VV P11 promoter and modified by silent point mutations and by an HA tag at the C terminus, was constructed by standard PCR methods. The plasmids containing mutated copies of the F10L ORF under the control of the P11 promoter and a C-terminal HA tag, namely pP11-F10G96DHA, pP11-F10D307AHA, and pP11-F10D343AHA, were constructed by use of the QuikChange site-directed mutagenesis kit according to the instructions of the manufacturer (Stratagene, La Jolla, Calif.). The pP11F10HA-WT plasmid was used as a template for all reactions.
Recombinant VV vF10/F10V5i was constructed from vT7LacOI (24) and pVOTE.2F10V5 by homologous recombination, using previously described procedures (7). vF10/F10V5i was then used to generate vF10V5i by recombination with the F10 knockout plasmid. Fluorescent plaques containing the recombinant virus expressing GFP were picked and used to infect fresh monolayers of BS-C-1 cells three successive times to isolate vF10V5i.
In vitro protein kinase assay.
Approximately 3 x 107 BS-C-1 cells were infected with vF10V5i at a multiplicity of infection of 3 in the absence of IPTG and either mock transfected or transfected with 15 µg of plasmid. Twenty-four hours after infection, the cells were harvested, washed with ice-cold phosphate-buffered saline (PBS), and lysed with a mixture containing 10 mM Tris (pH 7.5), 150 mM NaCl, 0.5% (vol/vol) Triton X-100, 0.2% (wt/vol) deoxycholic acid, and protease inhibitor cocktail tablets (Roche Molecular Biochemicals, Indianapolis, Ind.) for 30 min on ice. Lysates were clarified by centrifugation at 20,000 x g for 30 min at 4°C and then cleared with 50 µl of 20% protein A-Sepharose beads for 1 h at 4°C. The cleared lysate was then centrifuged at 100 x g for 1 min and the supernatant was incubated with 100 µl of 50% (vol/vol) slurry of the anti-HA affinity matrix (Roche Molecular Biochemicals) for 3 h. The resin was washed four times with lysis buffer and twice with kinase buffer (50 mM Tris [pH 7.5], 20 mM ß-glycerophosphate, 5 mM MgCl2, 1 mM dithiothreitol, 1 mM sodium fluoride, 100 µM sodium orthovanadate, and protease inhibitor cocktail tablet). The protein kinase assays were performed in a 30-µl solution containing 20 µl of HA resin bound to F10, 1 µg of dephosphorylated
-casein (Sigma), and 20 mM [
-32P]ATP in kinase buffer. Reactions were incubated at 30°C for 10 min and were terminated by the addition of SDS-PAGE sample buffer.
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The presence of two lac operators, one regulating expression of the T7 RNA polymerase and the other regulating a V5 epitope-tagged F10V5 gene with a T7 promoter, provided two levels of repression. The formation of vF10V5i plaques was dependent on IPTG (data not shown). In a one-step growth experiment, the yield of vF10V5i increased with IPTG concentrations up to 25 µM and reached a plateau at higher concentrations of IPTG (data not shown). A time course experiment indicated that the kinetics of replication of vF10V5i in the presence of 50 µM IPTG were similar to those of VV WR (Fig. 1A). In contrast, the yield of vF10V5i barely increased over a 48-h period in the absence of IPTG (Fig. 1A). The difference in yields in the presence and absence of IPTG was approximately 2 log.
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FIG. 1. Effects of IPTG on the replication of vF10V5i and synthesis of the F10 protein. (A) Effect of IPTG on virus yield. BS-C-1 cells were infected with VV WR ( ) or vF10V5i in the absence ( ) or presence ( ) of 50 µM IPTG. Cells were harvested at the indicated times after infection and virus titers were determined by plaque assay in the presence of IPTG. (B) Effect of IPTG on F10V5 and H3 protein synthesis. BS-C-1 cells were infected at a multiplicity of infection of 10 with vF10V5i in the presence or absence of 50 µM IPTG and harvested at intervals between 2 and 24 h postinfection (hpi). Proteins from total cell lysates were resolved by electrophoresis on a 10 to 20% polyacrylamide gradient gel in SDS-Tricine buffer, analyzed by Western blotting using anti-V5 or anti-H3 antibody, and detected by chemiluminescence. The numbers on the left correspond to the molecular masses of marker proteins. The positions of the F10V5 and H3 bands are indicated on the right. (C) Temporal synthesis of F10 in cells infected with WR. BS-C-1 cells were mock infected for 8 h (U) or infected at a multiplicity of infection of 10 in the absence or presence of AraC and harvested between 0 and 24 h postinfection (hpi). Proteins from whole-cell extracts were analyzed by Western blotting as in panel A except that the antiserum was prepared against a peptide composed of amino acids 5 to 20 of F10.
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The kinetics of F10 synthesis during an infection with wild-type virus were not previously reported, although late expression was predicted from the putative promoter sequences and the presence of early transcriptional termination motifs within the F10L ORF (10). The 50-kDa F10 band was detected by Western blotting 6 h after infection and continued to increase in intensity during the remainder of the 24-h time course (Fig. 1C), similar to the kinetics of induced F10 expression (Fig. 1B). F10 was not detected in lysates of cells infected with VV in the presence of cytosine arabinoside (AraC) (Fig. 1C), demonstrating that the F10 promoter has no early component. An additional Western blotting experiment showed that the amount of F10 made by vF10V5i in 50 µM IPTG was a little higher than that made by wild-type VV (data not shown).
Taken together, these data indicated that the block in vF10V5i replication can be attributed to inhibition of F10 expression in the absence of IPTG, while the kinetics of F10 expression and virus replication are similar to those of wild-type virus in the presence of IPTG.
Morphogenesis of vF10V5i under nonpermissive conditions. Several of the major core proteins undergo proteolytic cleavage by a process that is coupled to morphogenesis and can be prevented by the drug rifampin (9). Pulse-chase experiments were performed to determine whether repression of F10 expression affected the proteolytic processing of viral proteins. Pulse-chase experiments revealed that processing of the P4a and P4b precursors was inhibited to similar extents in cells infected with vF10V5i in the absence of IPTG or with WR in the presence of rifampin (data not shown). A similar inhibition occurs during infections with F10 ts mutants at the nonpermissive temperature (21, 23). These results suggested that morphogenesis of VV particles was blocked in cells infected with vF10V5i in the absence of IPTG.
To examine morphogenesis directly, cells were infected with vF10V5i in the presence or absence of IPTG and thin sections were examined by electron microscopy. In the presence of IPTG, the replication cycle appeared normal, with numerous membrane crescents and immature virions in nearly all cell sections 8 and 12 h after infection and large numbers of mature virions 24 h after infection (not shown). Eight hours after infection in the absence of IPTG, viral factory regions recognizable by their distinct electron density and exclusion of cellular organelles were present in most thin sections (Fig. 2A), but membrane crescents were very few in number and were detected in only 8 of 50 cell sections examined. Twelve (Fig. 2B) and 24 (Fig. 2C) h after infection without IPTG, the number of sections with crescents increased to 23 and 32 of 50, respectively, but there were still no mature virions.
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FIG. 2. Electron microscopy of cells infected with vF10V5i. BS-C-1 cells were infected with vF10V5i at a multiplicity of infection of 10 at 37°C (A, B, C) or 39°C (D) in the absence of IPTG. Eight (A), 12 (B), or 24 (C and D) h after infection, the cells were fixed and prepared for transmission electron microscopy essentially as described previously (20). Electron micrographs are shown, with the scales indicated by bars. Abbreviations: C, crescents; nu, nucleoid within an IV.
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There was a difference in the stability of the F10 protein at 39°C when it was synthesized by the stringent ts28 mutant or vF10V5i. Western blotting experiments indicated that 24 h after infection in the absence of IPTG, the amount of F10 was slightly reduced at 39°C compared to 37°C, whereas the amount of F10 was increased at the higher temperature in the presence of IPTG (data not shown). F10 expressed by the stringent F10 ts28 mutant, however, was unstable at the elevated temperature, as it was detected by Western blotting at 37°C but not at 39°C (data not shown).
Dependence of A17 phosphorylation and processing on induction of F10 expression. Phosphorylation of the A17 and A14 membrane components fails to occur when cells are infected with the F10 ts28 mutant at the nonpermissive temperature (1, 4), as can now be understood by the instability of the mutated protein at 39°C. To determine whether repression of F10 expression has a similar effect at 37°C, immunoblotting experiments were performed with pTyr and pThr antibodies, which recognize tyrosine- and threonine-phosphorylated A17, respectively. The identity of the A17 band was confirmed by using an inducible A17 mutant of VV (25) and antibodies specific to A17 (1). Both tyrosine and threonine phosphorylation of A17 was severely inhibited in the absence of IPTG (Fig. 3, rows 2 and 3), although very weak signals could be detected when the blots were overdeveloped (not shown). The levels of phosphorylated A17 increased proportionally to the concentration of IPTG and corresponded to the induction of V5-tagged F10 (Fig. 3, row 1). The severe reduction in tyrosine phosphorylation in the absence of IPTG was confirmed by SDS-PAGE analysis of 32P-labeled proteins that bound to pTyr antibody (data not shown).
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FIG. 3. Effect of IPTG on the synthesis of F10V5 and on the posttranslational modification of A17. BS-C-1 cells were infected with vF10V5i in the presence of 0 to 100 µM IPTG. Twenty-four hours after infection, the cells were harvested and the proteins were analyzed by electrophoresis on a 4 to 20% polyacrylamide gradient gel in SDS-Tris-glycine buffer. The proteins were then transferred to a nitrocellulose membrane and incubated with the anti-V5 (F10V5), anti-pTyr (A17PY), anti-pThr (A17PT), or anti-A17N antibody. The bands were detected by chemiluminescence. The numbers on the left correspond to the molecular masses of the marker proteins.
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Mutations in the putative active site of F10 abolish kinase activity and phosphorylation of A17.
Lin and Broyles (10) recognized several protein kinase motifs in the F10L ORF, including domain I, containing a cluster of glycine residues near the N terminus; domain II, containing the putative active site lysine; and domains VI and VII, with highly conserved aspartic acid residues. The motifs in the F10 kinase, however, had not been tested for their role in catalysis either in vitro or in vivo. We constructed VV late promoter expression plasmids containing the wild-type F10L ORF (pF10HA-WT) and F10L ORFs with the following individual codon mutations: (i) Gly at position 96 to Asp (pP11-F10G96DHA), (ii) Asp at position 307 to Ala (pP11-F10D307AHA), and (iii) Asp at position 343 to Ala (pP11-F10D343AHA). A nonconservative substitution was made in domain I in order to disrupt the local structure, which is thought to be involved in ATP binding. However, the Asp-to-Ala substitutions in domains VI and VII were designed to have minimal effects on structure. The influenza HA tag was added to the C termini of the wild-type and mutated forms of F10 to allow their isolation by affinity purification and detection by Western blotting. Cells were infected with vF10V5i in the absence of IPTG, to repress expression of virus-encoded F10, and transfected with plasmids expressing the HA epitope-tagged F10 regulated by a VV late promoter or a control plasmid. The cells were harvested 24 h after infection and extracts were prepared and incubated with a MAb against the HA tag followed by protein A-agarose beads, which were then extensively washed to remove loosely bound proteins. Western blotting indicated that wild-type and mutated proteins had been successfully isolated by this procedure (Fig. 4A). The washed beads containing bound F10 were incubated with casein and [
-32P]ATP, and the products were analyzed by SDS-PAGE and autoradiography. An intensely labeled casein band was detected only in the lane containing the product of wild-type F10 (Fig. 4A). These data were in accord with predictions regarding the active site of the F10 kinase.
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FIG. 4. In vitro and in vivo activity of mutated F10 kinase. (A) In vitro activity. BS-C-1 cells were infected with vF10V5i in the absence of IPTG and either mock transfected or transfected with expression plasmids encoding HA epitope-tagged wild-type F10 (F10HA-WT) or mutated F10 (F10G96DHA, F10D307AHA, and F10D343AHA). Twenty-four hours after infection, the cells were harvested and the wild-type and mutated forms of F10 were bound to an anti-HA affinity matrix. The bound proteins were analyzed by electrophoresis on a 4 to 20% polyacrylamide gradient gel in SDS-Tris-glycine buffer followed by Western blotting using an anti-HA antibody conjugated to horseradish peroxidase. Kinase assays were performed in kinase buffer, with F10HA proteins still attached to the affinity matrix, 20 µM [ -32P]ATP, and 1 µg of casein. After incubation for 10 min at 30°C, samples were denatured with SDS and analyzed on a 4 to 20% polyacrylamide gradient gel in SDS-Tris-glycine buffer. Proteins were visualized by autoradiography. (B) BS-C-1 cells were infected with vF10V5i in the presence of 50 µM IPTG or in the absence of IPTG and transfected as for panel A. Twenty-four hours after infection, the cells were harvested and total cell lysates were prepared. The proteins were analyzed by electrophoresis on a 10 to 20% polyacrylamide gradient gel in SDS-Tricine buffer. The proteins were then transferred to a nitrocellulose membrane and incubated with anti-HA and anti-pTyr antibodies to detect F10 and tyrosine-phosphorylated A17, respectively. The bands were detected by chemiluminescence.
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Wild-type and mutated forms of F10 localize in viral factories. Inactivation of the catalytic site is a likely explanation for the failure of mutated forms of F10 to induce phosphorylation of A17. However, because F10 could also have nonenzymatic roles, we considered the possibility that the mutations caused aberrant intracellular targeting of F10. Because the intracellular localization of F10 was not previously described, we first used the V5 MAb to locate epitope-tagged F10 expressed by vF10V5i in the presence of IPTG. The MAb stained the DNA-containing viral factories in the cytoplasm 8 h (Fig. 5, row 1) as well as 12 and 16 h (not shown) after infection. There was also a hazy reticular staining that could be due to overexpression of V5-tagged F10. Viral factory localization also occurred when HA-tagged wild-type F10 was expressed from a transfected plasmid in cells infected with vF10V5i in the absence of IPTG (Fig. 5, row 2). Furthermore, the same pattern was obtained when each F10 with a point mutation in the kinase motif was expressed (Fig. 5, rows 3 to 5). No background labeling was detected with the anti-V5 or anti-HA antibodies in cells infected with WR (data not shown), indicating that these antibodies specifically recognize the tagged versions of F10.
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FIG. 5. Localization of F10 by confocal microscopy. HeLa cells were infected with vF10V5i at a multiplicity of infection of 5 in the absence or presence of 25 µM IPTG and transfected with plasmids as described in the legend for Fig. 4. Eight hours after infection, the cells were fixed with 4% paraformaldehyde in PBS for 20 min, washed and permeabilized with 0.1% Triton X-100 in PBS for 7 min, and blocked with 1% bovine serum albumin in PBS for 10 min. The cells infected in the presence of IPTG were stained with the anti-V5 MAb to detect the induced F10V5 protein, while those infected in the absence of the inducer and transfected with plasmids were stained with an anti-HA MAb (column 2). In each case, rhodamine red X-conjugated goat anti-mouse antibody was used as the secondary antibody. DNA in nuclei and viral factories was stained with DAPI (column 1). The cells were examined by confocal microscopy and merged images are shown in column 3. Colors: red, anti-V5 or anti-HA antibody; blue, DAPI.
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Transcomplementation of vF10V5i by wild-type F10 but not by F10 with mutations in the kinase active site. Although we showed that the catalytic activity of the F10 kinase is required for phosphorylation of A17, there was no evidence that such phosphorylation is required for virus assembly. F10 is a virion component and physically interacts with other virion proteins required for virus morphogenesis (18). It was possible, therefore, that F10 protein interactions might be more important for virus replication than the kinase activity. This would not be unprecedented, as the essential role of the VV uracil DNA glycosylase is independent of its enzyme activity (5). Since we showed that specific amino acid substitutions in F10 inactivated the catalytic site, we determined whether these mutated proteins could complement the replication of vF10V5i in the absence of IPTG. Complementation assays were carried out by infecting cells with vF10V5i in the absence of IPTG and transfecting them with plasmids expressing wild-type or mutated F10 proteins or GFP. The cells were harvested 24 h after infection and virus titers were determined by plaque assay in the presence of IPTG. In the absence of IPTG, cells transfected with the wild-type F10 plasmid produced 10 times more virus than cells transfected with the control GFP plasmid (Fig. 6). In contrast, no increase in virus titer was observed in cells transfected with any of the three plasmids expressing mutated forms of F10 (Fig. 6).
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FIG. 6. Transcomplementation of virus infectivity. HeLa cells were infected and transfected as described in the legend for Fig. 4 with (+) or without (-) 50 µM IPTG. After 24 h, the cells were harvested and the virus titers were determined by plaque assay in the presence of 50 µM IPTG. Values are the averages plus standard deviations (error bars) of three independent transfection experiments.
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Electron microscopic images of cells infected with the most stringent F10 ts mutant showed a nearly complete block in viral membrane formation 24 h after infection at the nonpermissive temperature (21, 23). Interestingly, when we infected cells with vF10V5i in the absence of IPTG at 39°C instead of 37°C, we also saw a nearly complete block in viral membrane formation that persisted for 24 h. One explanation is that the wild-type F10 kinase manifests mild temperature sensitivity, which would be sufficient to reduce the activity of the very small amounts of kinase. This temperature sensitivity of the wild-type F10 kinase would have an insignificant biological effect when normal amounts of F10 are produced. This explanation is consistent with the observed thermolability of the purified F10 kinase in vitro (23). Alternatively, an unphosphorylated viral protein or a protein that normally interacts physically with F10 may be thermolabile when F10 is repressed. In this regard, we previously found that elevating the temperature of cells infected with an inducible A30 mutant caused the assembly defect to more closely resemble that of an A30 ts mutant at the same temperature (19).
The fact that F10 is a kinase implied that loss of catalytic activity is responsible for the lethality of F10 ts mutants at the nonpermissive temperature. The finding that the A17 and A14 membrane components are unphosphorylated at the nonpermissive temperature (1, 4) and the greater in vitro thermolability of a mutated kinase than of the wild type (23) were consistent with this interpretation. Nevertheless, there were no data indicating that phosphorylation of A17 or A14 is essential, and the thermal sensitivity of the mutated kinase could result from a global change in conformation rather than from specific elimination of enzymatic activity. Indeed, we found that F10 made by the ts28 mutant was unstable in vivo at the nonpermissive temperature. For this study, we used site-specific mutagenesis to provide more direct evidence for the catalytic role of the F10 kinase in vivo. The catalytic domains of protein kinase family members are not conserved uniformly but consist of alternating regions of high and low conservation (8). Lin and Broyles (10) noted amino acid clusters in the F10L ORF that are characteristic of several protein kinase domains. We made single substitutions of the most highly conserved amino acids of recognizable domains I, VI, and VII and found that they inactivated the kinase activity when assayed in vitro. When expressed by transfection in cells infected with vF10V5i in the absence of IPTG, the mutated proteins were stable and colocalized with the DNA-containing cytoplasmic factories. However, A17 was not tyrosine phosphorylated when any of the mutated forms of F10 were expressed. Moreover, the wild-type F10 but none of the catalytically inactive mutants was able to complement the membrane assembly defect of vF10V5i in the absence of IPTG. Since the F10 kinase phosphorylates multiple viral proteins, further dissection of the system may require the mutagenesis of the phosphate acceptor sites of individual viral proteins.
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