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Journal of Virology, May 2003, p. 5065-5072, Vol. 77, No. 9
0022-538X/03/$08.00+0 DOI: 10.1128/JVI.77.9.5065-5072.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Laboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland 20892-0460
Received 14 October 2002/ Accepted 16 January 2003
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M. spicilegus (formerly M. hortulanus) inhabits Central and Eastern Europe and Asiatic Russia, overlapping with M. macedonicus and M. mus musculus (16). M. spicilegus is similar to these two species morphologically and genetically, but not behaviorally, and there is no evidence that interbreeding occurs. M. spicilegus is unusual in its monogamous mating system and in its habit of constructing large mounds of earth and seeds. Several previous studies have examined M. spicilegus for endogenous and infectious MLVs. M. spicilegus differs from the laboratory strains and other European species in that it does not contain endogenous viral env genes related to MCF and xenotropic MLVs (13). Tomonaga and Coffin (20) more recently demonstrated that these mice carry proviral env sequences of a novel subgroup that is equidistant from ecotropic and nonecotropic viruses and that likely represents an ancestral form of MLV. In addition to its unusual proviral content, M. spicilegus also differs from the other European mice in that it is the only one from which infectious virus has been isolated (21). This isolate is a novel ecotropic virus that was transmitted as an infectious agent in randomly bred laboratory colonies but was lost from these mice sometime after 1985 (22).
In the present study, we examined the susceptibility of M. spicilegus to exogenous MLV infection. For this purpose, Moloney MLV (MoMLV) was chosen because of its broad host range and pathogenic properties. Results of this study show that infectious ecotropic virus can be recovered from MoMLV-inoculated M. spicilegus but that these isolates differ phenotypically from MoMLV. Unlike MoMLV, all of the isolates grow to high titer in M. dunni cells, and one highly unusual isolate is capable of inducing large syncytia in M. dunni. Using site-specific mutagenesis, we identified a small number of amino acid changes within a segment of the SUenv VRA region responsible for these phenotypes.
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Neonatal M. spicilegus mice were inoculated intraperitoneally with ecotropic MoMLV originally obtained from J. Hartley (National Institute of Allergy and Infectious Diseases [NIAID], Bethesda, Md.). Inoculated mice were sacrificed 8 to 14 weeks after inoculation, and cell suspensions of spleen and thymus cells were assayed for infectious ecotropic virus. These cells were used to infect cultured SC-1 (8), M. dunni (14), and mink lung cells plated at 2 x 105 cells per 60-mm dish with Polybrene (4 µg/ml; Aldrich, Milwaukee, Wis.). Cells were passaged and examined for infectious virus by testing for reverse transcriptase (RT) or by the XC test (19). For the XC test, SC-1 plates were irradiated and overlaid with 106 XC cells/plate. Plates were stained 3 days later and examined for plaques of syncytia. For the RT assay, samples of culture fluid were centrifuged for 5 min at 860 x g to remove cells. RT activity in the supernatants was then measured as described by Wilson and Eiden (23).
Additional cell lines used to examine the host range of recovered viruses included NIH 3T3 and A9. Virus stocks of AKV MLV, NB-tropic Friend MLV (FrMLV), and Moloney HIX MCF virus were obtained from J. Hartley (NIAID).
Southern blotting. High-molecular-weight DNA was isolated from virus-infected cultures by standard protocols. DNAs were digested with restriction enzymes, electrophoresed on 0.4% agarose gels, transferred to nylon membranes (Hybond N+; Amersham, Piscataway, N.J.), and hybridized with radiolabeled probe. As probe, a 216-bp segment of the MoMLV env gene was amplified by PCR with use of the following as primers: 5'-GGACAAGATCCAGGGCTTACA-3' (forward primer) and 5'-TACTAAGTTTAGCAGCCTATT-3' (reverse primer).
Cloning and sequencing. Hirt DNA was prepared from M. dunni cells infected with virus isolates Spl603-3 and Spl574 and was used as PCR substrate (9). The PCR (20-µl final volume) contained 0.1 µg of the template, 2.5 U of AmpliTaq Gold DNA polymerase (PE Applied Biosystems, Foster City, Calif.), and 20 pmol of primers.
The primers to amplify the viral env genes were as follows: Unienv, 5'-GGATACACGCCGCTCACGTA-3' (MoMLV env universal forward primer); UniLTR, 5'-CGGGCGACTCAGTCTATCGG-3' (MoMLV long terminal repeat universal reverse primer); VRA1, 5'-GACGGTATGGGCAACTTCTG-3' (MoMLV SUenv specific forward primer); VRA2, 5'-GCCCCAATAGGCACAGTAGA-3' (MoMLV SUenv specific reverse primer); 3'env, 5'-TGTCCGAAGTGACCGGAC-3' (MoMLV TM specific forward primer); and ULTR, 5'-CATGCCTTGCAAGATGGC-3' (MoMLV TM specific reverse primer).
Unienv and UniLTR primers were used to amplify the full-length env gene. VRA1 and VRA2 were designed to amplify the VRA region of SU, and 3'env and ULTR amplified the env TM domain (Fig. 1A).
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FIG. 1. (A) General structure of MoMLV. An open box is used to indicate the position of VRA. The arrows identify the PCR primers and their products. LTR, long terminal repeat. (B) The S82F substitution was introduced into MoMLV by a series of substitutions. The solid vertical lines indicate the positions of the three substitutions in the 2.5-kb env gene PCR product of Spl574 clone p480-10. The arrows indicate the restriction sites for BamHI (B) and HpaI (H). The internal HpaI fragment was first removed and replaced by the comparable segment of MoMLV to produce p480-Mo, and then the internal BamHI segment of p480-Mo was replaced by the S82F-containing BamHI segment of p480-10.
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The PCRs were carried out in a GeneAmp PCR system 9700 machine (PE Applied Biosystems). The reactions were performed for 35 cycles with a 30-s DNA denaturation step at 95°C, a 30-s annealing step, and a 1-min extension step at 72°C. The annealing temperature in the first cycle was 63°C, was subsequently reduced by 1°C each cycle for the next eight cycles, and was then maintained at 55°C for the remaining 27 cycles. The VRA, full-length env, and mCAT1 receptor PCR products were cloned into the pCR2.1-TOPO vector and sequenced. The TM PCR product was sequenced directly.
Mutagenesis. Two strategies were used for mutagenesis. The addition of two adjacent serine residues into a site within the env VRA region was accomplished by using the Stratagene (La Jolla, Calif.) ExSite PCR-Based Site-Directed Mutagenesis kit. HpaI digestion of the MoMLV clone p63-2 produced a 1.3-kb env fragment containing VRA that corresponds to nucleotides 5818 to 7197 of the viral genome. Plasmid p63-2 contains an integrated MoMLV provirus and was a gift of J. Silver (NIAID) (2). This 1.3-kb fragment was subcloned into the vector pCR2.1-TOPO. Amino acid changes were introduced into the env gene by using the following oligonucleotides: forward primer 5'-AGCAGCGGCAGCAGCCCAGGCTGTTCCAGA-3' and reverse primer 5'-CCCTGAGCAACAAGGGGGCCCCGG-3'. The mutated fragment was then removed as a 1.3-kb HpaI fragment and was ligated to p63-2, from which the corresponding 1.3-kb fragment had been deleted.
To obtain recombinant MoMLV with the single amino acid substitution S82F, we first prepared a Hirt extract (9) of cells infected with virus isolate Spl574. Primers Unienv and UniLTR were used to amplify a segment containing env and long terminal repeat sequences. These products of about 2.5 kb were cloned into the pCR2.1-TOPO vector and sequenced. The deduced amino acid sequence of one of these clones, p480-10, contained three substitutions, including a single substitution within VRA, S82F (Fig. 1B). To create an MoMLV clone containing only the single VRA substitution, a series of exchanges were made (Fig. 1B). First, clone p480-Mo was constructed by replacing the HpaI fragment of p480-10 with the corresponding fragment of MoMLV plasmid p63-2. Second, a 870-bp BamHI containing only the S82F substitution was excised from p480-10 and used to replace the corresponding fragment within p480-Mo to produce p480-Mo-S82F. Finally, the 1.3-kb HpaI fragment containing the single mutation S82F was removed from p480-Mo-S82F and ligated into p63-2, from which the corresponding fragment had been excised.
All mutants were confirmed by DNA sequencing.
Transfection and infection. To determine whether these mutations were associated with novel syncytium-inducing and host range phenotypes, mutated proviral DNAs were introduced into NIH 3T3 cells by using the Qiagen (Valencia, Calif.) PolyFect Transfection Kit. After 3 days in culture, supernatants were harvested and assayed for RT. To measure syncytium formation in M. dunni cells, 2 x 104 M. dunni cells in six-well tissue culture plates were infected with MoMLV or mutant virus containing medium in the presence of Polybrene (4 µg/ml). After 2 to 4 days, the cells were examined by light microscopy either directly or after being fixed in methanol and stained with methylene blue. Cells were photographed by using a Nikon TS100 microscope and DXM1200 digital camera.
Pseudotype assay. LacZ pseudotype virus was generated by transfection of TELCeB6 cells with the ecotropic MoMLV envelope expression vector, pVPack-Eco (wild-type; Stratagene) and pVPack-S82F (mutant). TELCeB6 produces noninfectious viral particles harboring the MFGnlslacZ retroviral vector. Viral supernatants were collected and filtered and used to infect NIH 3T3, M. dunni, and SC-1 cells that had been plated in six-well culture dishes at a density of 1.5 x 105 per well. The cells were infected with 1 ml of virus in the presence of 8 µg of Polybrene/ml for 3 h before 2 ml of fresh medium was added to each well. Two days after infection, cells were fixed with 0.5% glutaraldehyde and stained to reveal the presence of ß-galactosidase activity. Infectious titers were expressed as the number of blue CFU per milliliter of virus supernatant.
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TABLE 1. Titers of virus isolates from M. spicilegus inoculated with MoMLV as neonates
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FIG. 2. Comparison of the deduced amino acid sequences of the VRA regions of MoMLV and five other ecotropic MLVs. HoMLV, M. hortulanus (M. spicilegus) MLV (21, 22). MLV-SS is a Moloney clone into which two serine residues have been added. Dashes indicate no change; asterisks represent deletions.
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TABLE 2. Virus titers of MoMLV variants in different mouse cell lines
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Syncytium-inducing virus. A second novel phenotype was detected among the viruses isolated from the 17 M. spicilegus mice infected with MoMLV. A single isolate, Spl574, produced large multinucleated syncytia on M. dunni cells that appeared 2 days after infection (Fig. 3B). These syncytia often contain more than 15 nuclei, although the size of syncytia in individual cultures is affected by cell density; infection of cells near confluency produces fewer and smaller syncytia. Syncytium induction is a consistent consequence of M. dunni cell infection, and the virus can be titered by the number of plaques of syncytia in M. dunni cultures.
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FIG. 3. (A) Uninfected M. dunni cells. (B) M. dunni cells 2 days after infection with Spl574. (C) Floating cells collected from an M. dunni culture 3 days after infection with Spl574. (D) M. dunni cells 2 days after infection with mutant virus MoMLV-S82F. (E) Uninfected NIH 3T3 cells. (F) NIH 3T3 cells 5 days after infection with Spl574. Objective lens magnification was x10, except for panel C, for which magnification was x40.
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Syncytium formation was rarely noted following infection of cultures of other established mouse cell lines, including NIH 3T3, SC-1, and A9. Among these cells, only NIH 3T3 cells showed any syncytium induction at all (Fig. 3F). However, on these cells, the number of syncytia was small, the individual syncytia rarely contained more than three nuclei, and syncytia were rarely seen before 5 days after infection. On the other mouse cells, no discernible cytopathic effects could be detected after 2 weeks of observation.
Titration of the Spl574 isolate on the different cells showed that this virus grows efficiently only on M. dunni cells (Table 2). Virus titers determined by the XC test were reduced by 2 logs on NIH 3T3 cells and by 3 logs on SC-1.
Because the XC test relies on syncytium induction and because Spl574 has a novel syncytium phenotype, we also determined virus titer by using retrovirus vectors expressing the normal and mutant env glycoproteins in a single-cycle infection assay that does not rely on syncytium induction. As shown in Table 3, this assay produced titers for MoMLV and S82F that were comparable to the results from the XC test. The S82F pseudotype showed high titers on M. dunni cells compared to MoMLV but was poorly infectious in NIH 3T3 and SC-1 cells. No syncytia were observed in any of the pseudotype-infected cultures, indicating that virus infection is insufficient to cause syncytia, which suggests that formation of syncytia is likely to require viral env glycoprotein expression on the cell surface.
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TABLE 3. Effect of the S82F envelope mutation on viral infectivity
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Sequencing and mutagenesis. Because the ability of MLVs to form syncytia has been attributed to sequence variation at multiple sites in TM and SU (11, 15, 18), we sequenced the entire env gene of Spl574. The TM domain was 100% identical to that of MoMLV: the region encoding the cytoplasmic tail was not truncated, and no nucleotide changes were noted in the fusion domain (data not shown). Within SU, however, there were 6 amino acid changes, 4 of which were within the VRA region (Fig. 4). Five of these differences represented amino acid substitutions, and the fourth was an insertion of a serine residue. Of these changes, however, only one, the S82F substitution, was found in all sequenced clones.
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FIG. 4. Deduced amino acid sequences of the env genes of three clones of the syncytium-inducing virus Spl574. The open boxes indicate the relative positions of the VRA, VRB, and PRD segments within SU. Vertical lines indicate the positions of substitutions or insertions in the three clones, and the numbers represent the amino acid position.
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Sequence analysis of M. spicilegus mCAT1. These results suggest that the virus inoculated into M. spicilegus is exposed to selective pressures that can result in altered growth properties. One possible explanation for this is that M. spicilegus, like M. dunni, may encode an mCAT1 receptor that differs from that of the prototypical NIH 3T3 receptor, and that such differences might select for env variants. The M. dunni receptor has been sequenced, and differences within the third extracellular loop have been associated with reduced susceptibility to MoMLV (5, 6) (Fig. 5).
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FIG. 5. Comparison of the deduced amino acid sequences of the third extracellular regions of the mCAT1 receptor of NIH 3T3 (mCAT1), SC-1 (sCAT1), M. dunni (dCAT1), and M. spicilegus (HCAT1). The two potential N-linked glycosylation sites are underlined. Y235 and E237 are critical for efficient virus infection and binding of MLV envelope protein (1).
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The relative inability of MoMLV to replicate on M. dunni cells has been attributed to sequence variations within the third extracellular loop of the M. dunni receptor (5, 6). We therefore speculated that the M. spicilegus isolates represented adaptations to a variant M. spicilegus receptor. However, our sequence analysis indicates that not only does the M. spicilegus mCAT1 receptor not resemble the M. dunni variant, but it appears to be identical to the NIH 3T3 mCAT1. Similarly, sequence differences in mCAT1 cannot account for the restricted replication of the S82F mutant in SC-1 cells. Thus, it is not clear why these MoMLV variants were selected in M. spicilegus, but our sequencing results suggest that some mechanism other than receptor sequence variation, such as glycosylation or other posttranslational modification, may be responsible.
The mechanism by which retroviruses cause syncytia is under active investigation and clearly involves receptor interactions. Previous mutagenesis studies on FrMLV have shown that three amino acids are crucial for receptor binding and virus infection: S84 (S82 in MoMLV), D86, and W102 (4). Substitutions at all three of these sites abolished infectivity. Our studies indicate that a specific substitution at one of these sites in MoMLV, S82F, results in a syncytium-inducing virus. Interestingly, a substitution in another of these critical residues, W102G, is responsible for the only other syncytium-inducing MLV variant caused by mutations in SU. This FrMLV-related ecotropic virus isolate, TR1.3, causes syncytia in SC-1 cells (15). The present study provides further evidence of the importance of these residues in receptor interactions and confirms that alteration of this interaction can result in syncytium induction.
The receptor binding site in SUenv is created by two helices and two loops at the top of the receptor binding domain. Amino acid S84 in FrMLV (S82 in MoMLV) is positioned as a single residue between Loop1 and the small helix (4). The two inserted serine residues that restore infectivity of MoMLV in M. dunni are within Loop1. Mutational analysis has shown that substitutions of alanine and glycine at S84 do not alter binding, whereas substitution with isoleucine eliminates infectivity (4). As shown here, substitution with phenylalanine, like isoleucine, substantially reduces infectivity on cells with mCAT1, and this may be related to the fact that both of these substitutions introduce bulky side chains at this position. The observation that M. dunni cells show increased susceptibility to viruses with either the S82F substitution or the serine insertions in Loop1 suggests that these changes produce subtle alterations in the binding site that enhance interaction with the variant M. dunni receptor.
Syncytium induction is relatively rare in MLVs but is common in lentiviruses, where it is associated with pathogenicity. The syncytium-inducing mouse viruses are also pathogenic. Thus, the syncytium-inducing Friend virus variant TR1.3 causes hind limb paralysis in mice, and this disease is associated with the appearance of syncytia in midbrain endothelial cells (15). A recent study described a novel wild mouse retrovirus, M813, that causes syncytia in MuLV-infected cells and, in vivo, produces a peripheral lymphoma associated with large multinucleated cells of macrophage origin (17). In the present study, the inoculated M. spicilegus mice were sacrificed within 14 weeks of infection, at which time there was no gross indication of disease. We have not yet introduced the variant viruses into mice to determine their disease-inducing potential, but the restricted replication of the S82F mutant in laboratory mouse cells suggests that pathogenicity may be restricted to wild mouse species.
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