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Journal of Virology, April 2003, p. 4679-4684, Vol. 77, No. 8
0022-538X/03/$08.00+0 DOI: 10.1128/JVI.77.8.4679-4684.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Sameh Basta, Weisan Chen, Jack R. Bennink, and Jonathan W. Yewdell*
Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892
Received 10 October 2002/ Accepted 23 January 2003
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The widening discrepancy between paradigm and observation seemed to be reconciled by the finding that the artificial delivery of exogenous antigens to the cytosol enabled their entry to the classical pathway trod by endogenous antigens (15, 39). Indeed, the discovery that professional antigen-presenting cells (pAPCs) can transfer endocytosed antigens to the cytosol (17, 23) provides a cellular biological basis for the presentation of exogenous antigens to TCD8+.
Nature often does not favor simplicity, however, and the existence of the endosome-to-cytosol pathway does not preclude the endosomal generation of peptide class I complexes à la the major histocompatibility complex (MHC) class II antigen-processing system. Indeed, solid evidence has accumulated for the MHC class I processing of particulate antigens in endosomal compartments of pAPCs (21, 22, 36).
The endosomal processing of antigens raises a serious issue of specificity. Given the complexity of the classical cytosolic pathway, which imposes at least two filters (in the forms of the proteasome and the transporter associated with antigen processing [TAP]) on the peptides provided to class I molecules, how can the action of endosomal proteases result in the generation of the same determinants? Biologically, and pragmatically for those intent on raising TCD8+ by endosomally processed vaccines, this is a crucial question. There is little point in making use of endosomal antigen processing to induce TCD8+ that cannot recognize target cells expressing determinants produced by the cytosolic pathway. By the same token, if exogenous immunogens can elicit TCD8+ that recognize endogenously processed antigens, then the advantages of using non-biosynthetic-based immunogens are obvious.
To date, studies of exogenous antigen processing have been limited to one or two determinants in a given system. Here, we take advantage of the influenza virus (IV) system to study the immunogenicity of multiple determinants in a complex antigen, in this case virus preparations rendered completely noninfectious by boiling. Numerous IV determinants recognized by H-2b and H-2d mice have been defined through the combined efforts of a number of laboratories (2, 3, 11, 14, 19, 27, 33, 35). These determinants can be placed into a stable immunodominance hierarchy that varies little between inbred individuals immunized under a given set of conditions (1, 6). In this study, we compared the immunodominance hierarchies induced by infectious and boiled virus and examined the mechanism of presentation of boiled virus.
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Mice and cytotoxic-T-lymphocyte priming in vivo.
For in vivo priming, 8- to 10-week-old female BALB/c mice and C57BL/J6 (B6) mice (Taconic, Germantown, N.Y.), were injected intraperitoneally (i.p.) with
600 hemagglutinating units of chicken egg allantoic fluid containing infectious or boiled (100°C for 10 min) IV Puerto Rico/8/34 (H1N1) (PR8) or A/NT/60/68 (H3N2) (NT60 virus). Splenocytes and peritoneal exudate cells collected by balanced salt solution-bovine serum albumin lavage were directly assessed after 7 days for intracellular cytokine staining (ICS). Alternatively, splenocytes were cultured for 7 days in vitro with IV-infected autologous spleen cells with I+ medium (Iscoves modified Dulbeccos modified essential medium [Iscoves MDEM], 10% fetal calf serum, 5 x 10-5 M ß-mercaptoethanol, 50 µg of gentamicin sulfate/ml).
Generation of specific TCD8+ lines. For generation of TCD8+ lines, animals were generally used at more than 30 days after priming. TCD8+ stimulation was always carried out in RP-10 with 10 U of recombinant human interleukin-2/ml. In brief, 3 x 107 splenocytes were stimulated with 1/40 to 1/50 the number of NT60-infected or peptide-pulsed EL-4 cells, which were irradiated with 220 Gy. Stimulated live T cells were harvested through Ficoll-Hypaque gradient and enriched for CD8+ cells by depletion of B220+ and CD4+ cells by using monoclonal antibody (MAb)-coated M-450 Dynal beads.
TCD8+ functional assays.
For ICS, following lysis of erythrocytes, splenocytes were resuspended at a concentration of 107/ml in I+, and 200 µl was added per well to round-bottom 96-well plates. Synthetic peptides (>95% purity) were added to a concentration of 0.5 µM. In the case of cysteine-containing peptides, the medium was supplemented with 200 µM TCEP [tris (2-carboxyethyl) phosphine hydrochloride] (Pierce, Rockford, Ill.) to prevent sulfhydryl modification (8). After 2 h of incubation at 37°C, brefeldin A (BFA) was added, and cells were incubated for a further 4 h to accumulate gamma interferon (IFN-
) in the endoplasmic reticulum of activated cells. Cells were then incubated on ice for 1 h with a Cy-Chrome-conjugated anti-CD8
MAb (BD PharMingen, San Diego, Calif.) at a 1:50 dilution in phosphate-buffered saline (PBS), washed, fixed with 1% paraformaldehyde in PBS at room temperature for 20 min, and then incubated with fluorescein isothiocyanate-conjugated anti-IFN-
MAb (PharMingen) at a 1:100 dilution in PBS containing 0.3% saponin (Calbiochem, San Diego, Calif.). Stained cells were analyzed by flow cytometry gated on the CD8+ cells.
51Cr-release assays were performed as follows. A total of 106 target cells were labeled with 100 µCi of Na51CrO4 (Perkin-Elmer, Boston, Mass.) in a minimum volume of medium at 37°C for 60 min. After two washes, 104 cells were aliquoted into round-bottom 96-well plates containing serial dilutions of effector TCD8+. In some experiments, TCEP was freshly dissolved in H2O and used at a concentration of 200 µM in microcytotoxicity assay wells. The radioactivity in supernatants collected after 6 h of incubation at 37°C was determined by using a gamma counter. The percentage of specific release was then determined as follows: percentage of specific release = [(TCD8+-induced release - spontaneous release)/(release by detergent - spontaneous release)] x 100.
Antigen presentation assay. Thioglycollate-induced peritoneal exudate cells (tPEC) were harvested from C57BL/J6 (B6) and B6 TAP1 knockout mice (TAP-/-; obtained from Taconic) 3 days after i.p. injection with 1 ml of thioglycolate (BD Biosciences, Franklin Lakes, N.J.). Harvested tPEC were pooled and resuspended with I+ at a concentration of 2 x 106/ml. One hundred microliters of the tPEC suspension was plated into a 96-well U microplate, and then 50 µl of boiled NT60 was added. For inhibitor studies, tPEC in suspension were pretreated for 30 min with 2 µM cytochalasin D (Calbiochem), the lowest concentration that inhibits uptake of fluorescent Saccharomyces cerevisiae, (Molecular Probes, Eugene, Oreg.), or 25 mM NH4Cl (Sigma, St. Louis, Mo.). After 3 to 6 h of incubation, 100 µl of specific TCD8+ at a concentration of 106/ml was added with BFA (Sigma) to give a final concentration of 7 µg/ml. ICS was performed 3 h later. Viability was confirmed by either trypan blue exclusion visually or ethidium homodimer (Molecular Probes) exclusion by flow cytometry.
ß2m addition assay. tPEC were harvested from B6 and TAP-/- mice and washed five times with I- medium (Iscove's MDEM, 5 x 10-5 M ß-mercaptoethanol, 0.1% bovine serum albumin). tPEC (4 x 105/ml) were cultured overnight in 96-well round-bottom plates in 200 µl of I- with or without 5 µg of human ß2 microglobulin (ß2m)/ml (Fitzgerald Industries International, Inc., Concord, Mass.). Cells were then incubated with 50 µl of boiled-NT60 (bNT60)- or infectious-NT60-containing allantoic fluid for 3 h. One hundred microliters of TCD8+ at a concentration of 106/ml was then added into each well with BFA at a final concentration of 5 µg/ml. ICS was performed after a 3-h incubation.
Peptide binding assay.
Freshly harvested tPEC were washed with PBS and suspended at a concentration of 4 x 105/ml in 200 µl of PBS supplemented with 0.1% NaN3. Cells were incubated on ice for 20 min with or without 10 µg of synthetic peptide FAPGNYPAL, which binds both Kb and Db with high affinity (9). Cells were washed three times and then incubated for 20 min on ice in 100 µl of PBS containing a 5 µM concentration of synthetic peptide SIINFEKL coupled to fluorescein via the
-amino group of the Lys residue (10). Cells were washed, and the amount of peptide bound by live cells (determined by ethidium homodimer exclusion) was determined by flow cytometry. Alternatively, fresh tPEC were incubated similarly with synthetic peptide SIINFEKL on ice, and the amounts of cell surface peptide class I complexes were enumerated by flow cytometry following staining with the 25-D1.16 MAb coupled to Cy5.
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We first compared the immunogenicities of infectious and boiled PR8 (bPR8) in BALB/c mice by immunizing mice by i.p. injection and stimulating memory TCD8+ in vitro with virus-infected APCs. After 7 days of culture, cells were tested for their capacity to lyse histocompatible target cells sensitized with Kd-restricted peptides. As seen in Fig. 1A, infectious virus induces TCD8+ that can be ranked according to their lytic activity as follows: NP147-155 > HA518-526 > NP39-47 = NP218-226. bPR8 elicited an easily detected secondary response that was approximately half the magnitude of that elicited by PR8 as detected on PR8-infected cells (Fig. 1B). The dose used was close to optimal since increasing or decreasing the amount of bPR8 by fivefold decreased immunogenicity (data not shown). The immunogenicity of bPR8 could not be attributed solely to contamination with free protein or peptides present in allantoic fluid, since purified virus was also immunogenic upon boiling (data not shown). Importantly, the spectrum of specificities elicited by bPR8 was similar to but clearly different from that of PR8: NP218-226-specific TCD8+ were not primed, and the activities of the other specificities were rearranged (NP39-47 = NP147-155 > HA518-526).
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FIG. 1. TCD8+ response of BALB/c mice to boiled virus. Splenocytes from BALB/c mice immunized with infectious (A) or boiled (B) PR8 were restimulated in vitro for 7 days and then used in a 51Cr-release assay at the indicated effector-to-target cell ratio (E:T). P815 target cells were infected with PR8 or sensitized with synthetic peptides as indicated. Similar results were obtained in an additional experiment.
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PA224-233 > PB2198-207, NP55-63, and PA141-149 (7), was altered, with relative decreases in TCD8+ responding to immunodominant determinants NP366-374 and PA224-233 and relative increases in TCD8+ responses to subdominant determinants, particularly NP55-63 and PA141-149.
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FIG. 2. TCD8+ response of B6 mice to boiled virus. Splenocytes or tPEC from B6 mice immunized with infectious (A) or boiled (B) NT60 were tested ex vivo by ICS for recognition of DC2.4 cells sensitized with the indicated peptides or with infectious NT60. Note that the response elicited by infectious NT60 was 20-fold higher than that elicited by bNT60. Similar results were obtained in four additional experiments.
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TABLE 1. NT60 and bNT60 elicit highly overlapping sets of TCD8+a
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(Fig. 3A). All of the pAPCs were able to generate NP366-374 from bNT60. Bone marrow-derived dendritic cells were actually the least effective APCs. We chose tPEC for further study based on their high capacity to present bNT60 to TCD8+ and ease of preparation from both wild-type and knockout mice.
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FIG. 3. Presentation of bNT60 to NP366-374-specific TCD8+ in vitro. (A) The indicated cells were incubated with bNT60 for 6 h prior to addition of an NP366-374-specific TCD8+ line. After 3 h, the activation of TCD8+ was assessed by ICS. BMDC, bone marrow-derived dendritic cells; BMM , bone marrow macrophages. (B) tPEC incubated as in panel A with supernatants from bNT60 after centrifugation for 10 min at the indicated relative centrifugal force (rcf) were used to stimulate NP366-374-specific TCD8+. (C and D) Cells were incubated with bNT60 or infectious NT60 as indicated and used to stimulate NP366-374-specific TCD8+. Similar results were obtained in an additional experiment.
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The presentation of NP366-374 by IV-infected cells via the standard cytosolic route is largely TAP dependent (13, 32). We compared the capacity of tPEC from B6 and TAP1-/- mice to present bNT60 to NP366-374-specific TCD8+. In the absence of TAP, activation by boiled virus was reduced by approximately threefold while activation by infectious virus was reduced by approximately 15-fold (Fig. 3C). The absence of TAP is accompanied by a decrease in the number of peptide-receptive (PR) class I molecules on the cell surface (10) and in endosomal compartments (5, 28, 29). We extended these observations to tPEC by measuring the binding of a fluorescent version of SIINFEKL, which associates with both Kb and Db (10). Specific binding to class I molecules was determined by subtracting background binding values obtained when cells were first incubated with an unlabeled peptide that also binds Db and Kb. As shown in Table 2, tPEC from B6 mice possess
40% more PR class I molecules than do tPEC from TAP-/- mice, as determined by the difference in peptide binding. Similarly enhanced binding of nonmodified SIINFEKL to Kb on B6 tPEC was demonstrated by staining of cells with Cy5-conjugated 25-D1.16 MAb (20), which is specific for Kb-Ova257-264 complexes (Table 2). These findings are consistent with the idea that the decreased presentation of boiled virus by TAP1-/- cells is due to a decrease in PR class I molecules in post-Golgi complex compartments.
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TABLE 2. TAP knockout decreases PR molecules on tPECa
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FIG. 4. Presentation of boiled virus is enhanced by ß2m. tPEC from B6 mice were incubated overnight with or without human ß2m and exposed to either infectious NT60 or bNT60. Cells were tested for their capacity to activate NP366-374- or NT60-specific TCD8+ as described in the legend to Fig. 3. Similar, though less dramatic, results were obtained in two additional experiments.
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TABLE 3. Presentation of bNT60 to NP366-374-specific TCD8+ is blocked by endosomal and phagosomal inhibitors
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Here we demonstrate that the specificities of TCD8+ responding to boiled IV overlap considerably with those elicited by infectious virus. A mountain of evidence indicates that these determinants are generated from infectious virus via the standard cytosolic pathway (though the involvement of the proteasome in the generation of many of the determinants has not been definitively established), at least in the nonprofessional APCs studied in vitro (37). While we cannot eliminate the possibility that boiled virus is presented via a cytosolic route, our findings suggest that it is presented via endosomal processing. If this is true, then the data shown in Table 1 indicate that the sets of peptides generated by endosomal and cytosolic processing overlap to a surprisingly high degree.
How is this possible? Studies of immunodominance indicate that perhaps only one in five peptides capable of high-affinity binding to class I molecules is generated from its source proteins in sufficient amounts by the cytosolic pathway to be immunogenic (38). It is not difficult to see how the endosomal route could generate a high percentage of the peptides generated by the cytosolic route. The trouble comes from achieving this without generating additional determinants that are generated in limiting amounts by the cytosolic route. Since the major filter in cytosolic processing is proteolysis (not TAP), this suggests an unexpected overlap in the specificities of endosomal and cytosolic proteases.
We do not mean to imply that the overlap is seamless. Indeed, Schirmbeck, Wild, and Reimann have reported that distinct determinants are generated by endosomal and cytosolic processing of hepatitis B virus surface antigen (25). It is possible, indeed even likely, that we have missed some determinants uniquely immunogenic in boiled virus. The point is rather that such determinants do not dominate the response to boiled virus.
Overall, the TCD8+ response to boiled virus is more balanced than the response to infectious virus. This may be due to a more balanced generation of peptides. Alternatively, it could reflect differences in the nature of the APC or the conditions of antigen presentation. If nothing else, interferons and other cytokines induced by virus infection will alter the conditions during antigen presentation. Additional potential factors include the cytopathogenicity of the virus for APCs and the continued synthesis of viral antigens until the virus is cleared.
From the standpoint of vaccine development, the present results potentially represent welcome news. They suggest that it may be possible to obtain a balanced, reasonably robust immune response with an extremely simple antigen preparation that avoids the unavoidable side effects of live viral vaccines or the potential dangers of DNA vaccines. It may be possible to boost immunogenicity further by using adjuvants. Importantly, TCD8+ induced by this noninfectious preparation recognize determinants generated by virus-infected cells.
Present address: Department of Clinical Pathology, Korea University Medical Center Anam Hospital, 126-1 Seoul, Korea 136-705. ![]()
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