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Journal of Virology, March 2003, p. 3084-3090, Vol. 77, No. 5
0022-538X/03/$08.00+0 DOI: 10.1128/JVI.77.5.3084-3090.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Ram R. Shukla,1,2,
and Ajit Kumar1,2*
Graduate Program in Genetics,1 Department of Biochemistry and Molecular Biology, The George Washington University, Washington, D.C. 200372
Received 1 July 2002/ Accepted 3 December 2002
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The prototypic Rev NES consists of a short stretch of hydrophobic amino acids, primarily leucines (4, 17). Leucine-rich NESs have been identified in several other proteins, including the human T-cell leukemia virus type 1 (HTLV-1) Rex protein (27). Rev and Rex have limited amino acid homology, yet HTLV-1 Rex protein performs functions analogous to those of HIV-1 Rev (13). The Rex protein also shuttles between the nucleus and the cytoplasm of infected cells, and through binding to the Rex response element, it allows expression of the incompletely spliced mRNAs that encode the HTLV-1 Gag, Pol, and Env structural proteins (10). Several cellular proteins specifically interact with the Rev NES, RRE RNA, or the Rev-RRE complex and likely influence HIV-1 Rev function. For example, the Rev NES domain was shown to bind the nuclear export receptor CRM1/exportin 1 (26). Other proteins involved in RNA splicing or processing have been reported to bind to the RRE or the Rev-RRE complex (28).
An important goal in AIDS research has been the development of small animal models for HIV-1 infection that simulate the stages of HIV disease in humans (5). Although several murine models for studies of AIDS pathogenesis have been reported, these models lack long-term, productive viral replication presumably due to blocks at several steps of viral gene expression (24). A goal of this study is to characterize posttranscriptional block in Rev function that prevents productive viral replication in A9 cells, a murine fibroblast cell line. We have shown that in A9 cells, HIV-1 Rev function is restricted, whereas HTLV-1 Rex protein is functional (33). In this study, we rescued Rev function in A9 cells using either a Rev-Rex chimeric protein or expression of the C-terminal domain of Rev in conjunction with the Rev protein. The results suggest that the C-terminal domain of Rev mediates the restriction of Rev function in A9 cells, presumably by its interaction with murine Rev inhibitory factors.
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Cell culture and transfection. HeLa and A9 cells were maintained as described previously (33). Cells were plated at approximately 2 x 105 cells per 35-mm-diameter dish 24 to 48 h before transfection and transfected with 2 to 4 µg of DNA, using Superfect (Qiagen) according to the manufacturer's instructions, or 10 µg of DNA by the calcium phosphate method. Cells were harvested 48 h after transfection and lysed as previously described (33). Protein concentration of the cell lysates was determined by a Bradford assay. For indirect immunofluorescence studies, HeLa and A9 cells were cultured on coverslips and transfected with 1 µg of pcsRevGFP or pcsRevTDGFP in the presence or absence of 1 µg of pCMV128.
CAT assay. The amount of protein used for chloramphenicol acetyltransferase (CAT) assay was normalized to the transfection efficiency, which in turn was determined by cotransfecting a ß-galactosidase expression plasmid, pCMVß, or a green fluorescent protein (GFP) expression plasmid, pEGFPN1 (Clontech). Fluorescence-activated cell sorter analysis using Cell Quest Program was used to quantify GFP, and a luminometer was used to quantify ß-galactosidase enzyme product (Tropix). CAT assays were performed as previously described (33). Results are expressed as fold increase in CAT activity normalized to the control val-ue (pCMV128 reporter construct alone) from three to five independent assays.
Immunoprecipitation and immunoblot analysis. For immunoprecipitation, A9 cells transfected with 5 µg of pCMV128 alone or cotransfected with both pCMV128 (5 µg) and pRSVRev (10 µg) were washed with phosphate-buffered saline (PBS) and lysed in buffer containing 100 mM KPO4 and 0.2% Triton X-100 (pH 7.8). Cell lysates (1 ml) were preincubated with 100 µl of protein G-Sepharose beads (Bio-Rad) for 1 h and cleared at 12,000 x g for 20 s. Following the preclearing step, the supernatants (500 µl) were incubated with a pool of two mouse anti-Rev monoclonal antibodies, Ab2 and Ab4 (11) (kindly provided by Jonathan Karn, MRC Center, Cambridge, England) for 1 h and precipitated with 50 µl of protein G-Sepharose beads in lysis buffer. The resulting immunoprecipitates were centrifuged for 20 s at 12,000 x g and washed three times with lysis buffer followed by a final wash with 50 mM Tris (pH 8.0). All manipulations were performed at 4°C. The precipitated proteins were separated on a denaturing 4 to 20% gradient acrylamide gel (Bio-Rad) along with prestained protein markers (Invitrogen), transferred to polyvinylidene difluoride membranes (Bio-Rad), and probed for Rev protein (using the same pool of antibodies [at a 1:1,000 dilution] employed in the immunoprecipitation procedure). Purified HIV-1 Rev (NIH AIDS Research and Reference Reagent Program) was used as a positive control.
For Gag immunoblotting, cell lysates were resolved by sodium dodecyl sulfate-10% polyacrylamide gel electrophoresis, transferred to nitrocellulose membranes, and probed with a rabbit polyclonal HIV-1 p25/p24 Gag antiserum (NIH AIDS Research and Reference Reagent Program). The antigen-antibody complexes were detected by chemiluminescence (Amersham).
Export and import of Rev. Cells were washed with PBS 24 h after transfection and treated with cycloheximide (25 µg/ml) (Sigma) and/or actinomycin D (4 µg/ml) (Sigma) for 3 h at 37°C. The cells were then washed three times in 1x PBS and fixed with cold methanol at 4°C for 5 min. Fixed cells were washed three times with cold 1x PBS and treated with acetone for 4 min at -20°C. The permeabilized cells were then washed with 1x PBS and blocked with 0.3% bovine serum albumin in 1x PBS for 1 h at room temperature. HeLa cells were incubated with a rabbit antinucleolin antibody (16) at a dilution of 1:500 (provided by Raymond Petryshyn, Children's Research Institute, Washington, D.C.), and A9 cells were incubated with a mouse antifibrillarin MAb72B9 antibody (30) at a dilution of 1:500 (provided by Joseph Gall, Carnegie Institution, Baltimore, Md.). After 1 h of incubation with primary antibody at 37°C, cells were washed and incubated with Texas red-conjugated anti-rabbit and anti-mouse secondary antibodies at a dilution of 1:1,000 (Amersham). The immunofluorescence of the stained cells was examined with a Bio-Rad MRC 1024 confocal laser scanning microscope using Bio-Rad Lasersharp MRC 1024 software.
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FIG. 1. HIV-1 Rev-dependent Gag expression in HeLa and A9 cells. (a) Diagram depicting pCMVGag2RRE. CMV, cytomegalovirus major immediate-early promoter; GAG, HIV-1 gag p17, p24, and part of p9 open reading frame (protease gene not included); RRE, HIV-1 RRE; 3' LTR, the HIV-1 long terminal repeat polyadenylation signal. (b) Gag expression in HeLa and A9 cells. A9 and HeLa cells were transfected with herring sperm DNA (HS DNA) (lanes 1 and 5), pCMVGag2RRE (2 µg) alone (lanes 2 and 6) or with pRSVRev (1 µg) (lanes 3 and 7) or pRSVRev1-79Rex79-95 (1 µg) (lanes 4 and 8). The position of the Gag protein is indicated by the arrow.
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A9 and HeLa cells were transfected with either the pCMV128 reporter alone or in the presence of the pRSVRev or pRSVRev1-79/Rex79-95 expression vector. HeLa cells cotransfected with pCMV128 and pRSVRev yielded on average a 27-fold increase in CAT activity compared to cells transfected with the pCMV128 reporter plasmid alone (Fig. 2b, lanes 4 and 5, and c). Cotransfection of pCMV128 and the Rev-Rex chimera (pRSVRev1-79/Rex79-95) in HeLa cells resulted in, on average, a 17-fold increase in CAT activity (Fig. 2b, lane 6, and c). On the other hand, A9 cells cotransfected with pCMV128 and pRSVRev showed no significant increase in CAT activity compared to cells transfected with pCMV128 alone (Fig. 2b, lanes 1 and 2, and c), confirming our previous observation (33). However, when A9 cells were cotransfected with pCMV128 and pRSVRev1-79/Rex79-95, a 19-fold increase in CAT activity was observed (Fig. 2b, lane 3, and c).
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FIG. 2. Rev-Rex chimera rescues CAT reporter activity in A9 cells. (a) Diagram depicting pCMV128. CMV, cytomegalovirus major immediate-early promoter; SD, HIV-1 splice donor site; SA, HIV-1 splice acceptor site; 3'LTR, HIV-1 3' long terminal repeat. (b) HIV-1 Rev-dependent CAT activity in A9 and HeLa cells. Both cell lines were transfected with 1 µg of reporter construct pCMV128 alone (lanes 1 and 4) or cotransfected with 500 ng of pRSVRev (lanes 2 and 5) or 500 ng of pRSVRev1-79/Rex79-95 (lanes 3 and 6). CAT enzyme activity was determined as described in Materials and Methods. (c) Quantification of CAT assay results. Graphed results are expressed as fold increase in the pCMV128 reporter CAT activity in cells cotransfected with pRSVRev or pRSVRev1-79/Rex79-95 compared to cells transfected with pCMV128 alone. Values are averages ± standard errors (error bars) from five independent transfections.
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FIG. 3. HIV-1 Rev expression in A9 cells. A9 cells were cotransfected with pCMV128 and pRSVRev expression constructs and lysed 48 h posttransfection, as described in Materials and Methods. Lane 1, purified wild-type Rev protein (2 µg); lane 2, purified wild-type Rev protein (2 µg) immunoprecipitated as described in Materials and Methods; lane 3, A9 cells transfected with 5 µg of pCMV128; lane 4, A9 cells cotransfected with 5 µg of pCMV128 and 10 µg of pRSVRev. The positions of Rev protein (arrow) and heavy and light immunoglobulin G chains (asterisks) are indicated.
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Overexpression of the Rev C-terminal domain rescues Rev function in A9 cells. The above data suggest that the restriction of HIV-1 Rev function in A9 cells involves a host cell factor(s) which requires the C-terminal domain of Rev. Such factor(s) may bind the C-terminal domain of Rev and either fail to mediate Rev function or actively inhibit Rev function. In the latter case, overexpression of Rev C-terminal domain sequences might squelch the host factor(s) responsible for inhibiting Rev function in A9 cells. To test the hypothesis, HeLa and A9 cells were transfected with Rev expression plasmid (pRSVCRev), comprising the C-terminal amino acids 61 to 116 of the Rev protein along with pCMV128 reporter plus the Rev expression vector, pRSVRev. The ratio of C-terminal Rev (CRev)/Rev expression vectors used ranged from 0.5:1 to 4:1 (Fig. 4).
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FIG. 4. Overexpression of amino acids 61 to 116 of Rev C-terminal domain restores Rev function in A9 cells. (a) HIV-1 Rev-dependent CAT activity in A9 and HeLa cells. A9 and HeLa cells were transfected with 1 µg of the reporter construct pCMV128 alone (CMV128) or cotransfected with 500 ng of pRSVRev (Rev) or 1 µg of pRSVCRev (CRev) alone or with 500 ng of pRSVRev and increasing amounts of C-Rev (numbers represent ratios of plasmid amounts). (b) Quantification of CAT assay results for A9 cells. Graphed results are expressed as fold increase in the pCMV128 reporter CAT activity in response to cotransfected constructs. The Rev/CRev ratios are shown in parentheses in the symbol key. (c) Comparison of the level of rescue of Rev function in A9 cells. A9 cells were transfected with pCMV128 alone (lane 1) or cotransfected with pRSVRev (lane 2), pRSVCRev (lane 3), pRSVRev1-79Rex79-95 (lane 4) or pRSVCRev and pRSVRev at a 2:1 ratio.
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On the other hand, at CRev/Rev ratios of 1.5:1 and greater, a significant increase in CAT activity was observed in A9 cells compared to cells with the reporter alone (Fig. 4a, lanes 4 to 8, and b). The results suggest a squelching of Rev inhibitory factor(s) in A9 cells with affinity for the Rev carboxyl-terminal sequences. In other experiments, A9 cells cotransfected with the reporter and increasing amounts of either Rev or CRev expression plasmid (ranging from 1 to 6 µg) showed no increase in CAT activity above background levels, suggesting that the restriction of Rev function in A9 cells is not dependent on the amount of Rev and is not rescued by increasing amounts of CRev without the presence of full-length Rev protein (data not shown).
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Several possible reasons for the restriction of HIV-1 Rev function in murine cells have been proposed. One would expect that a combination of one or more of these mechanisms may contribute to the loss of Rev function in different murine cells. For example, our previous results suggested a lack of cellular factors in A9 cells that interacted with RRE RNA (32). Mariani and colleagues (24) reported inefficient processing of Gag protein in murine cells. Bieniasz and Cullen (3) reported reduced levels of the unspliced and genomic RNA transcripts in several rodent cells, but the results varied considerably among different rat and mouse cell lines. Yet another suggested mechanism for the lack of Rev function in murine cells (22) envisions a more efficient splicing of viral transcripts in murine cells than in human cells. While these results indicate wide variations in Rev function in different murine and rodent cells, they underscore the fact that the Rev function is restricted in murine cells whose mechanisms may vary depending upon the cell type used in the study. In this study, the results suggest that the murine cellular environment may restrict HIV-1 Rev function due to the presence of an inhibitor of Rev function or due to the modification of a positive cofactor of Rev.
Rev function block in A9 cells. Murine A9 cells do not support Rev function in transient-transfection assays or form RRE-host protein ribonucleoprotein complexes in vitro (32, 33). However, rescue of Rev function in A9 cells can be achieved using human and mouse somatic cell hybrids containing human chromosomes 6 and 11 (33). It is noted that human chromosome 12 did not rescue Rev function in these somatic cell hybrids (33). These results suggested that multiple host factors are required for optimal Rev function. In A9 cells, Rev cofactors may be posttranslationally modified, allowing them to act as Rev inhibitors or preventing their function as Rev cofactors, unlike their role in human cells. Alternatively, restriction of HIV-1 Rev function in A9 cells may be due to the presence of specific inhibitor(s) that interact with the Rev C-terminal domain.
Block in Rev function in A9 cells is not due to impaired localization or shuttling of the Rev protein. Yet another possibility is that the nucleocytoplasmic shuttling of Rev is impaired in these cells, as has been described for astrocytes (19). Astrocytes show impaired Rev function that is attributable to a predominantly cytoplasmic localization of the Rev protein (19). Other examples of inhibition of Rev function through changes in its localization include the trans-dominant mutant Rev protein (RevTD) (34) and a Sam68 C-terminal deletion mutant (29). RevTD has been shown to inhibit Rev function by multimerization with the wild-type Rev protein and trapping it in the cell nucleus, whereas the C-terminal deletion mutant of Sam68 has been shown to inhibit Rev function by trapping it in the cell cytoplasm (23, 29). In this study, proper nucleolar localization of both Rev and RevTD were confirmed in both A9 and HeLa cells using antibodies against nucleolus-specific proteins and Rev. Export of Rev-GFP was observed in both HeLa and A9 cells (data not shown), suggesting that the restriction of Rev function in A9 cells is not due to a defect in the nucleocytoplasmic shuttling of Rev protein.
Rev function in A9 cells can be rescued for singly spliced transcripts but not for unspliced transcripts. In contrast to HIV-1, HTLV-1 can replicate efficiently in murine cells (7; R. Feng, A. Kabayama, K. Uchida, H. Hoshino, and M. Miwa, Abstr. 2000 Meet. Retroviruses Cold Spring Harbor Lab., abstr. 171, 2000). Our results show that in A9 cells HTLV-1 Rex protein is functional, whereas HIV-1 Rev function is restricted (33). The region of the Rex protein which is necessary to complement Rev function has been mapped to a core activation domain represented by residues 79 to 95 of Rex protein (13, 17). We showed that Rev/Rex fusion protein was able to restore Rev function in A9 cells. Interestingly, the Rev/Rex chimera was insufficient to rescue Gag expression in A9 cells. The results suggest two important points: first, the restriction of Rev function with respect to singly spliced env transcripts and nonspliced gag transcript in murine cells is specific to Rev, and second, the transport of singly spliced env and unspliced gag transcripts may be independently regulated. Possible explanations for the difference may be the presence of host factors that interact with the cis-inhibitory sequences in gag coding sequence which are not present in the env/CAT reporter construct (31). A recent report demonstrated that murine NIH 3T3 fibroblasts stably expressing human CD4, human CCR5, and human cyclin T1 produced unspliced HIV-1 mRNA transcripts albeit at reduced levels but presented a dramatic block to virus assembly (24). The researchers suggested that even though the murine cells produced large amounts of Gag and Gag-Pol, the Gag protein was inefficiently processed.
Determining the nature of the block in Rev function in A9 cells. The rescue of Env-CAT reporter expression in A9 cells using a chimeric construct containing the first 79 amino acids of Rev fused to the C-terminal 79 to 95 amino acids of Rex suggested that the restriction of Rev function in A9 cells was associated with the carboxyl-terminal domain of the Rev protein. This is further supported by the fact that Rev inhibition can be titrated by coexpression of Rev and the C-terminal domain of HIV-1 Rev (amino acids 61 to 116 of Rev).
The data are consistent with a model which suggests the existence of an inhibitor of Rev function in A9 cells which can be squelched by overexpression of the C terminus of Rev. The results however do not exclude the possibility that a murine homologue of a Rev cofactor that recognizes the C-terminal domain of Rev may be unable to function, as is the case with murine cyclin T1 in Tat transactivation (18). The impairment in Rev function in A9 cells is not coupled to impaired shuttling of the Rev protein in this cell line. In addition, our results indicate that the translation of Rev protein and its stability is not impaired in A9 cells (Fig. 3). Determining the nature of the host factor(s) responsible for restriction of Rev function in A9 cells will help determine the mechanism of restriction of HIV-1 replication in murine cells and therefore aid in the development of an animal model for studying HIV-1 pathogenesis.
This work was supported in part by NIH grants CA72147 (A.K.) and AI42491 (R.R.S.), and a fellowship from the PROGRAMA PRAXIS XXI of the Portuguese Fundação para a Ciência e Tecnologia (to S.M.P.M.).
Present address: Unité de Therapie Cellulaire, Hôpital Saint Eloi, Montpellier, France. ![]()
Present address: United States Patent and Trademark Office, Crystal City, Va. ![]()
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