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Journal of Virology, February 2003, p. 2174-2181, Vol. 77, No. 3
0022-538X/03/$08.00+0 DOI: 10.1128/JVI.77.3.2174-2181.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
School of Biology, University of St. Andrews, Fife KY16 9TS,1 and Institute of Virology, University of Glasgow, Glasgow G11 5JR, Scotland,5 Department of Biochemistry and Immunology, St. George's Hospital Medical School, University of London, London SW17 0RE, England, United Kingdom,2 Howard Hughes Medical Institute and Department of Biochemistry, Molecular Biology and Cell Biology, Northwestern University, Evanston, Illinois 60208-3500,3 National Institute of Allergy and Infectious Diseases, Bethesda, Maryland 20892-80074
Received 19 August 2002/ Accepted 26 October 2002
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/ß) are produced by many cell types and have particular importance as an early line of innate immune defense; it is this type of IFN that is produced by nonlymphoid tissue culture cells. Gamma IFN (IFN-
) is produced by subsets of lymphocytes and plays a more prominent role in regulating the adaptive immune response. To survive in nature, it appears that all viruses must have some strategy for circumventing the IFN response, particularly the innate antiviral defense induced by IFN-
/ß. Viruses usually achieve this by producing proteins which either interfere with the ability of IFNs to induce an antiviral state within cells or block the activity of antiviral enzymes which have the potential to inhibit virus replication (2, 10, 11). Many paramyxoviruses at least partially circumvent the IFN response by blocking IFN-induced intracellular signaling and/or IFN production. For example, simian virus 5 (SV5) blocks IFN signaling by targeting STAT1 (a host cell transcription factor essential for both IFN-
/ß and IFN-
signaling) for proteasome-mediated degradation (7, 8). Since this is a property solely of the V protein, it is possible to make cells insensitive to IFN by constitutively expressing the V protein of SV5 (1).
Vaccines have proved extremely successful in controlling many virus infections. However, vaccines still have to be developed against many viruses, including, among the negative-strand RNA viruses, respiratory syncytial virus (RSV), the parainfluenza viruses, Ebola virus, and members of the Bunyaviridae family, including Hantavirus. It would also be desirable to develop improved vaccines for a number of negative-strand RNA viruses, including the measles, mumps, and influenza viruses. One of the most successful approaches to producing virus vaccines has been the generation of attenuated viruses, which are administered to mimic natural infection and induce protective immunity without causing disease. In the past, the generation of attenuated viruses has been empirical. However, with the advent of recombinant technology, the possibility of designing attenuated viruses that have been engineered to possess specific phenotypes has become a reality. One general approach to producing attenuated viruses would be to engineer viruses so as to disable their capacity to circumvent the IFN response (7, 9). This is feasible because viral anti-IFN proteins are usually dispensable for virus replication in cell culture, and viruses in which the genes encoding these proteins have been knocked out are attenuated in vivo. However, one problem which arises from knocking out viral IFN resistance genes is that it can be difficult to grow such viruses to high titer in tissue culture cells which produce and respond to IFN. Normally, IFN-sensitive viruses are grown in Vero cells, which are African green monkey fibroblasts that have lost the ability to produce IFN due to spontaneous gene deletions (6, 12). However, not all viruses grow well in Vero cells, presumably because of other host cell constraints on virus replication. Here we demonstrate how cells, including MRC5 cells (which are human diploid cells suitable for the production of attenuated viruses for use in humans), can simply and easily be engineered to express the V protein of SV5 and thus to no longer respond to IFN. We demonstrate that RSVs from which the NS1, NS2, SH, or glycoprotein G gene has been deleted (5, 17, 19, 20), a Bunyamwera (BUN) virus from which the NSs gene has been deleted (4), and a recombinant SV5 virus (SV5V
C; generated so as to make a truncated version of the V protein and thus to be sensitive to IFN [10a]) form larger plaques and can be grown to much higher titers in these IFN-nonresponsive cells than in the parental cells. Furthermore, many of the wild-type (wt) RNA and DNA viruses that were evaluated formed significantly larger plaques in the V-expressing cells.
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Immunofluorescence. Cells to be stained for immunofluorescence were grown on 10-mm-diameter coverslips (General Scientific Co. Ltd.). The cells were treated and stained with the anti-Pk monoclonal antibody (15). Antibody binding was detected by indirect immunofluorescence by using a secondary goat anti-mouse immunoglobulin Texas Red-conjugated antibody (catalog number SBA 1010-02; Seralab). Following staining for immunofluorescence, the monolayers of cells were examined by using a Nikon Microphot-FXA immunofluorescence microscope.
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NSs (in which the NSs gene has been deleted and which has increased sensitivity to IFN [19]), human RSVwt, and derivatives in which the NS1, NS2, or SH gene has been deleted (RSV
NS1, RSV
NS2, and RSV
SH, respectively) (5, 17, 20). These viruses were compared in human fibrosarcoma cells (2fTGH [13]) and 2f/SV5-V cells, which are derivatives of 2fTGH cells that cannot respond to IFN because they express the V protein of SV5 (1), as well as in Vero cells. It was found that whereas there was no major difference between the yield of BUNwt grown in 2fTGH and that grown in 2f/SV5-V cells, there was more than a 3 log increase in the yield of BUN
NSs in 2f/SV5-V cells compared to that in 2fTGH cells at 3 days postinfection (p.i.) (Table 1). Similarly, RSV
NS1, RSV
NS2, and RSV
SH grew to significantly higher titer on 2f/SV5-V cells than on 2fTGH cells. It is also of note that RSVwt grew to slightly higher titers on 2f/SV5-V cells than on 2fTGH cells, both of which produced more virus than Vero cells by this time p.i. (Table 1). |
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TABLE 1. Amount of infectious virus released into the medium by 3 days p.i. from cells infected at a multiplicity of infection of 0.01a
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FIG. 1. Photomicrographs showing the intracellular localization of the V protein of SV5 in MRC5/SV5-V and HEp2/SV5-V cells. Note that all the cells are positive for V and that V has a primarily nuclear distribution.
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NSs, RSVwt, RSV
NS1, RSV
NS2, RSV
SH, and a derivative of RSV in which the G gene had been deleted (RSV
G) were grown on all three cells types. In addition, bovine RSV also was grown on these cells, as it had previously been shown that bovine RSV is more sensitive to the IFN response in human cells than in bovine cells. Plaques were allowed to develop for 6 days, and the results revealed large increases in plaque size for most of the viruses in IFN nonresponder cells (Fig. 2). Thus, by 6 days p.i., RSVwt formed visible plaques on HEp2 and MRC5 cells, but the plaques were considerably larger on HEp2/SV5-V and MRC5/SV5-V cells (3). This indicated that although RSV has a mechanism for circumventing the IFN response that relies on the function of the NS1 and NS2 genes (16), its effect is apparently incomplete and can be augmented by expression of the SV5 V protein in trans. It also is noteworthy that RSVwt formed only pinpoint plaques on Vero cells by 6 days p.i. despite the absence of an IFN response in these cells. This indicates the presence of cell-specific differences in the ability of Vero cells to support RSV growth that are separate from the IFN system, and it illustrates the value of being able to readily convert desirable cell lines to be IFN nonresponsive.
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FIG.2. Photographs of plaques of RSVwt, RSV NS1, RSV NS2, RSV SH, and RSV G (a), bovine RSV (b), and BUNwt and BUN NSs (c) formed on Vero, HEp2, HEp2/SV5-V, MRC5, and MRC5/SV5-V cells grown in six-well petri dishes. The cells were fixed at 6 days p.i., or at 9 days p.i. in the case of cells infected with RSV NS2, and stained with Coomassie brilliant blue. The inserts are photographs of single plaques taken on an inverted microscope at 4x magnification.
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NS1, RSV
SH, and RSV
G was even more striking. Each of these viruses produced pinpoint plaques on Vero and HEp2 cells and somewhat larger plaques on MRC5 cells. In contrast, each of these three RSV deletion mutants produced very large plaques on HEp2/SV5-V and MRC5/SV5-V cells. The situation with RSV
NS2 was slightly different in that, although the plaques that formed on HEp2/SV5-V and MRC5/SV5-V cells were significantly larger than those formed on HEp2 or MRC5 cells, it took longer for the plaques to develop (note for Fig. 2 that the RSV
NS2 samples were fixed at 9 days p.i. as opposed to 6 days p.i. for all the other viruses). This suggests that while knocking out the NS2 gene reduced its ability to circumvent the IFN response, it also is deleterious to virus replication by an additional mechanism that likely does not involve IFN.
A striking increase in plaque size on the IFN nonresponder cells also was seen with bovine RSV. While bovine RSV produced pinpoint plaques at 6 days p.i. in Vero cells and did not produce detectable plaques in either HEp2 or MRC5 cells, very large plaques developed in both HEp2/SV5-V and MRC5/SV5-V cells. In contrast, BUNwt formed plaques of similar size on Vero cells and on HEp2 cells that did or did not express the V protein of SV5. However, the plaques formed by BUNwt on MRC5 cells were extremely diffuse, and in this experiment BUNwt clearly spread more rapidly in MRC5/SV5-V cells, destroying most of the monolayer by 6 days p.i. BUN
NSs formed pinpoint plaques on Vero cells and failed to form plaques on HEp2 cells but formed large plaques on HEp2/SV5-V cells that were similar in size to those of the BUNwt virus. BUN
NSs also failed to form plaques on MRC5 cells but destroyed the MRC5/SV5-V monolayer of cells.
Since clear differences were observed between the abilities of the RSV and BUN mutant viruses, as well as those of wt human and bovine RSV, to form plaques on HEp2/SV5-V and MRC5/SV5-V cells and their abilities to form plaques on HEp2 and MRC5 cells, it was decided to compare the amounts of infectious virus released into the medium following infection of these cells with selected viruses (BUNwt and BUN
NSs, RSVwt, RSV
NS1, RSV
SH, and bovine RSV) (Table 2). In general agreement with the results obtained by comparing the yields of these viruses on 2fTGH and 2f/SV5-V cells (Table 1), there was no significant difference between the yields of BUNwt virus in HEp2 and MRC5 cells and the yields in HEp2/SV5-V and MRC5/SV5-V cells. In contrast, there was a 1,000- to 4,000-fold increase in the yield of BUN
NSs in MRC5/SV5-V and HEp2/SV5-V cells compared to that in MRC5 and HEp2 cells, respectively. Similarly, there was an approximately 200-fold increase in the yield of RSV
NS1 and RSV
NS2 in HEp2/SV5-V cells compared to that in HEp2 cells, and there was a 500-fold increase the yield in MRC5/SV5-V cells compared to that in MRC5 cells. The increase in RSV
SH and RSV
G was not quite as dramatic, with a 10-fold difference observed between yields in HEp2/SV5-V and HEp2 cells and no difference between yields in MRC5/SV5-V and MRC5 cells. Interestingly, HEp2/SV5-V cells were also better able to support the replication of RSVwt than HEp2 cells (an eightfold difference) and were clearly the best cells for growing RSVwt under these conditions. Furthermore, the yields of bovine RSV at 6 days p.i. in HEp2/SV5-V and MRC5/SV5-V were significantly higher than those in the parental cell lines. This was most marked with MRC5 cells, whose parental line produced hardly any infectious virus. In contrast, the yield of bovine RSV was 2 PFU per cell from MRC5/SV5-V cells. These latter results are thus in general agreement with those recently published by Bossert and Conzelmann (3), who presented data which showed that the NS1 and NS2 proteins of bovine RSV, which act in concert to circumvent the IFN response (16), work poorly in human cells. In contrast, the NS1 and NS2 proteins of human RSV would be more effective in blunting the IFN response in the homologous human HEp2 and MRC5 cells, thus accounting for the higher titers obtained for human RSVwt in the parental cells and the lesser increase in titer conferred by expression of the SV5 V protein.
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TABLE 2. Amount of infectious virus released into the medium by 3 days p.i. from cells infected at a multiplicity of infection of 0.01a
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FIG. 3. Photographs of plaques of a variety of RNA and DNA viruses on Vero, HEp2, HEp2/SV5-V, MRC5, and MRC5/SV5-V cells grown in six-well petri dishes. The cells were fixed at various days p.i. (indicated in parentheses) and stained with Coomassie brilliant blue. Photographs were taken on an inverted microscope at 4x magnification. The viruses used in the plaque assays were measles virus (MeV, a wt isolate), canine distemper virus (CDV), SV5 (strain W3), hPIV2 (a wt and a recent clinical isolate, 5234), mumps virus (a wt and the Enders strain [att]), hPIV3 (PIV3), Theiler's virus, adenovirus type 2, HSV (strain STH2), and vaccinia virus (VV).
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C that encodes only the N-terminal domain of V and does not block IFN signaling (10a, 13a) failed to form plaques on MRC5 cells but formed large plaques on MRC5/SV5-V cells. Mumps and hPIV2 (both a laboratory-adapted strain [wt] and a recent clinical isolate [5234]) also failed to form plaques on MRC5 cells but formed large plaques on MRC5/SV5-V cells. Since each of these wt viruses blocks IFN signaling and reduces IFN production (1, 7, 8, 10a, 13a, 21), the natural block is shown to be leaky and can be supplemented by SV5 V protein expressed in trans. hPIV3, a member of the Respirovirus genus, formed slightly larger plaques on HEp2/SV5-V than on HEp2 cells, and while it caused clear plaques on MRC5 cells, the plaques were extremely large on MRC5/SV5-V cells. Theiler's virus, a rodent picornavirus, failed to form plaques in Vero cells and formed small plaques on HEp2, slightly larger plaques on HEp2/SV5-V cells, large plaques on MRC5 cells, and extremely large plaques on MRC5/SV5-V cells. Of the DNA viruses examined, vaccinia virus formed plaques on all cells, although the plaques were slightly larger on HEp2/SV5-V cells than on HEp2 cells. Herpes simplex virus (HSV) grew equally well in Vero, MRC5, and MRC5/SV5-V cells but formed only pinpoint plaques in HEp2 and HEp2/V cells. By 8 days p.i., adenovirus type 2 had failed to form plaques on Vero cells and formed pinpoint plaques on HEp2 and MRC5 cells, but it formed larger plaques on HEp2/SV5-V and MRC5/SV5-V cells. It is also of note that certain viruses failed to form plaques on Vero cells (Theiler's virus and adenovirus type 2) or HEp2/V cells (HSV), illustrating that there are host cell constraints other than the IFN response which may limit virus growth, although the IFN response may amplify the effects of these constraints.
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One unexpected finding was that the effect of improved growth appeared to be a general one. Thus, it was not restricted to viruses with defects in genes known to be involved in circumventing the IFN response, such as the RSV
NS1, RSV
NS2, BUN
NSs, and SV5V
C viruses, although the effects on these viruses were particularly striking; rather, the effect also applied to viruses that had mutations in genes that do not appear to be directly relevant to IFN responses, such as the RSV
G and RSV
SH viruses. Furthermore, for the majority of wt viruses tested, it is clear that their ability to circumvent the IFN response is not absolute, as they formed significantly larger plaques on IFN-nonresponsive cells. This supports the idea that viruses in general face a race between virus growth and the establishment of an IFN-mediated antiviral state. Thus, any viral defect, be it in attachment, entry, RNA synthesis, or packaging, has the potential to tip the balance in this race against the virus. This implies that in a normal acute infection, the IFN response likely constitutes a constant selective pressure that keeps viruses maximally fit in terms of replication speed and competence, as well as in the maintenance of mechanisms to circumvent the IFN response. It also suggests that the efficiency by which a given virus overcomes the IFN response may be extremely important in terms of its pathogenesis and host range.
These findings have direct relevance for vaccine development. By generating cell lines which cannot respond to IFN, it is possible to significantly increase the yield of viruses, especially those which grow poorly due to mutations such as those which adversely effect virus replication, spread, or ability to circumvent the IFN response. In addition, we and others (7, 9) suggested that a general approach to making attenuated virus vaccines would be to knock out the genes that allow them to circumvent the IFN response. This strategy would likely necessitate that such IFN-sensitive viruses be grown in IFN nonresponder cells. However, as noted above, any defect that reduces the replication competence of a virus makes it a candidate to exhibit improved growth in an IFN-nonresponsive cell line. While Vero cells may be used for growing IFN-sensitive viruses, from the results presented here, it is clear that alternative IFN-nonresponsive cells can be generated relatively easily and may be substantially better able to support the growth of some attenuated virus vaccines. Indeed, one of the reasons for making MRC5/SV5-V cells was because MRC5 cells are diploid cells and are one of the few human cell lines that have been approved for vaccine production. Given that MRC5/SV5-V cells appear better able to support the growth of viruses than MRC5 cells, it may therefore be possible, following proper regulatory certification, to substitute MRC5 cells with MRC5/SV5-V cells (or their equivalent) in current manufacturing practices to enhance the production of certain attenuated virus vaccines.
MRC5 and HEp2 cells are often the cells of choice for isolating viruses from clinical samples. Since viruses which replicate poorly in MRC5 and HEp2 cells may form plaques much more efficiently in the MRC5/SV5-V or HEp2/SV5-V cells, these IFN nonresponder cells might be of great value in diagnostic laboratories for the rapid isolation of known and/or unknown viruses. Furthermore, in situations of cross-species infection, the IFN response is a major constraint that may prevent animal viruses from replicating efficiently in human cells, in which the operation of their IFN resistance genes can be suboptimal due to host differences (7). This was further illustrated in the present study by the greater sensitivity of bovine RSV, compared to human RSV, to the IFN system of the human cells. Thus, IFN nonresponder cell lines likely will provide a more sensitive method of isolating nonhuman viruses that have the potential to be pathogenic in humans. In addition, by using IFN-nonresponsive human cells, it will also be possible to assess the ability of animal viruses to replicate in human cells and thereby pose a potential threat to cross into the human population (if they adapt to overcome the human IFN response).
Following the themes developed above, another potential application for IFN nonresponder cell lines is in the cultivation of viruses which have previously been refractory to replication in vitro, such as certain hepatitis viruses or caliciviruses. While it is likely that these viruses do not grow in tissue culture cells due to factors in addition to the IFN system, it might be that elimination of the IFN antiviral defense will be sufficient to allow suboptimal growth to become significant. Similarly, the general approach of making IFN-nonresponsive cells by expressing IFN antagonists, such as the V protein of SV5, may be extended to animal cells to improve the growth of animal viruses which grow poorly in the currently available human or animal cell lines.
Finally, there has been some concern about the generation of certain novel recombinant viruses, such as ones in which genes have been swapped. Such debate would now have to include the exchange of virus genes which encode IFN antagonists. The perceived danger is that such viruses may have altered tissue tropism and/or pathogenicity (14). However, a general strategy to ensure that any recombinant virus generated is attenuated would be to create each recombinant by using an IFN-sensitive viral backbone and to grow the recombinant viruses in IFN-nonresponsive cells. For example, if gene manipulation were performed on bunyaviruses to study the function of the glycoprotein gene, it would be possible to undertake such studies in the IFN-sensitive NSs deletion virus and to grow and evaluate the recombinant viruses in IFN-nonresponsive cells, secure in the knowledge that any virus generated would be attenuated. Furthermore, IFN-sensitive vectors expressing foreign genes could also be used as safe recombinant virus vaccines.
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