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Journal of Virology, February 2003, p. 1682-1690, Vol. 77, No. 3
0022-538X/03/$08.00+0 DOI: 10.1128/JVI.77.3.1682-1690.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Miriam Windsor, and Thomas Wileman*
Institute for Animal Health, Pirbright Laboratories, Woking, Surrey GU24 0NF, United Kingdom
Received 31 May 2002/ Accepted 31 October 2002
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We have been studying the assembly of ASF virus as a means of understanding how these highly complex, and possibly very ancient, structures are assembled in cells. In common with poxviruses and iridoviruses, ASF virus is assembled in perinuclear sites called viral factories (7, 27, 28). ASF virus factories lie close to the microtubule-organizing center, and their integrity is dependent on microtubules (22). Interestingly, they are surrounded by intermediate filament (vimentin) cages and closely resemble cellular aggresomes (16). Aggresomes use microtubules to sequester protein aggregates (22, 24), and recent work suggests that ASF virus, the poxviruses, and members of the Reoviridae use elements of the aggresome pathway to concentrate viral proteins at virus assembly sites (22, 29, 30).
ASF virus particles are 200 nm in diameter and contain double-stranded DNA genomes ranging in size from 200 to 350 kbp and at least 50 virally encoded proteins (14, 36). When viewed by electron microscopy, virions appear as hexagons in cross-section and have internal concentric layers of different electron densities (8, 31). These layers represent a central electron-dense nucleoid surrounded by a matrix, internal lipid envelopes and capsid layer (8, 31). The major capsid protein of ASF virus, p73, provides 35% of the protein present in the virion (6). Newly synthesized p73 binds a virally encoded chaperone in the cytosol that prevents capsid aggregation (13). Capsid assembly is initiated by dissociation of the chaperone and the rapid recruitment of p73 onto the endoplasmic reticulum membrane (11, 15). There then follows a lag period of approximately 60 min, after which the capsid protein oligomerizes into a large capsid-like complex of 50,000 kDa, containing between 600 and 700 copies of the capsid protein (12).
Current models of ASF virus assembly propose that protein-protein interactions between the capsid protein, and possibly other viral proteins assembled onto the endoplasmic reticulum, lead to constriction of endoplasmic reticulum cisternae and the bending of the membranes through one- to six-sided angular intermediates, eventually producing icosahedral structures (12, 15, 31). This process is energy dependent and incorporates two envelopes into the virion in a single step (10, 31).
The viral matrix, or inner core shell, of ASF virus lies between the inner membrane and the nucleoprotein core (4, 31). The major proteins of the matrix, p150, p37, p34, and p14, are produced through proteolytic processing of the pp220 virus polyprotein (33) (Fig. 1A) and together provide 25% of the protein mass of the virus and are present in equimolar amounts (6). While the pathway for the delivery of p73 into ASF virus has been studied in some detail, very little is known about the method of recruitment of the pp220 polyprotein or its products into virions. The polyprotein is cleaved at Gly-Gly-X sites by a virally encoded SUMO-1-specific protease encoded by the S273R gene (3, 25). Four sites have been identified for the production of p150, p37, p34, and p14, but the sequence of the pp220 polyprotein reveals a total of 19 Gly-Gly-X sites that could be recognized by the protease (36) (see Fig. 1B). Processing by the viral protease can therefore produce many more proteins than the p150, p37, p34, and p14 proteins packaged into virions.
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FIG. 1. Processing of pp220 polyprotein and location of Gly-Gly-X protease cleavage sites. (A) The ordered processing of pp220 polyprotein as described by Simón-Mateo et al. (33). The hatched blocks show the polyproteins, and the solid boxes depict the final structural proteins. (B) The locations of the 19 Gly-Gly-X sites (*) and the correct cleavage sites (arrows) are shown, as are the binding sites for the antibodies raised against the recombinant p34 protein ( -p34R) and the C-terminal peptide ( -p150C). (C) Tables displaying the predicted molecular masses of proteins recognized by the antibodies if cleavage occurred at all 19 Gly-Gly-X sites.
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Cell lysis, fractionation, and virus preparation. Total cell lysates and postnuclear membrane and cytosolic fractions were prepared as previously described (11). Crude virus preparations were prepared by allowing infected cells to reach an extensive cytopathic effect, and the cellular debris was removed from the medium by centrifugation for 15 min at 500 x g. The virus was collected by pelleting at 30,000 x g for 1 h at 4°C in a Beckman 50Ti rotor. The metabolic labeling of infected cells with [35S]methionine-cysteine was carried out as previously described (11). The proteins were separated by running lysates, under reducing conditions, on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE; 12.5% or 7.5% polyacrylamide) and were visualized either by Western blotting and subsequent detection with specific antibodies or by autoradiography.
Trypsin protection assay. Postnuclear membrane fractions were incubated with trypsin as previously described (11). Following the assay, the membranes were pelleted by centrifugation at 16,000 x g for 15 min at 4°C, and the proteins were resolved by immunoprecipitation and Western blotting as described above.
Sucrose density sedimentation analysis. Postnuclear membrane fractions were prepared and floated on a 10-ml gradient of 10 to 40% sucrose layered over a 1-ml 70% sucrose cushion, which were prepared and characterized as previously described (12). The gradients were centrifuged at 200,000 x g for 20 h at 4°C and then collected into 10 fractions. Continuous 10 to 70% gradients were prepared and calibrated as previously described (12) and, following addition of the sample, were centrifuged at 79,000 x g for 2.5 h at 4°C. The gradients were collected into 1.2-ml fractions.
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In the following experiments, recombinant proteins and synthetic peptides were used to raise antibodies recognizing p150 and p34. When analyzed with these antibodies, the polyprotein consistently migrated slower than the 250-kDa size marker, suggesting a mass of between 250 and 300 kDa, and p150 migrated between 170 and 180 kDa. We have maintained the pp220/p150/p34 nomenclature described previously for these ASF virus structural proteins (33).
The reading frame of the polyprotein contains 19 Gly-Gly-X sites (36) (Fig. 1B), only 4 of which are utilized to produce the structural proteins identified in virions (33). This raised the possibility that the polyprotein may be processed at several Gly-Gly-X sites in cells infected with ASF virus and that these products may also be packaged into virions. Alternatively, if incorrectly processed forms are not packaged, then either the protease must recognize the four correct sites specifically, or the virus has developed a different mechanism to ensure that only p150, p37, p34, and p14 are incorporated into the matrix of mature virions. Evidence for processing of pp220 at multiple sites was sought by Western blotting of lysates of infected cells and virions with antibodies raised against recombinant p34 protein or antibodies specific for a peptide representing the C terminus of p150.
Figure 2A shows that proteins reactive with the antibody raised against the p34 protein were detected in cells 8 h postinfection, and the levels increased throughout the time course. At 10 h, a clear ladder of antibody-reactive proteins was observed, and the intensity of the ladder increased between 12 and 16 h postinfection. The estimated sizes of 13 proteins most easily detected by the antibody are indicated (left inset). The smallest protein migrated between 32 and 35 kDa, and the largest migrated above 200 kDa, at a position consistent with the size of the ASF virus polyprotein.
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FIG. 2. pp220 polyprotein is cleaved at several sites in cells infected with ASF virus. At the indicated times after infection with the BA71v strain of ASF virus, Vero cells were lysed, and the proteins were resolved by SDS-PAGE on a 12.5% (A) or 7.5% (B) polyacrylamide gel, Western blotted, and probed with antibodies specific for p34 (A) or p150 (B). Enlarged views of the 16-h postinfection (hpi) lane and the upper section of the 1-h postinfection lane are also shown in panels A and B, respectively. The positions of the molecular size markers are shown on the left, and the interpolated molecular sizes are shown on the right (in kilodaltons). pp220 and p34 or p150 are indicated. The right insert in panel A shows a Western blot of cells lysed directly in 7.5% SDS at 16 h postinfection.
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The detection of multiple proteins by these antibodies suggested proteolysis at many of the Gly-Gly-X sites within the polyprotein. Proteolysis at all 19 Gly-Gly-X sites would produce over 30 proteins reactive with antibodies specific for p34 (Fig. 1C). Significantly, there are no internal Gly-Gly-X sites in p34. If the proteins seen on Western blots were produced by the Gly-Gly-X-specific viral protease rather than by random proteolysis by cellular proteases, then p34 should be the smallest protein recognized by antibodies raised against p34. Inspection of the blot in Fig. 2A shows that this is the case and argues that the reactive proteins are produced by the viral protease.
The antibody raised against p150 binds the C terminus of the polyprotein (Fig. 1B). Figure 1C predicts that 16 proteins would be recognized by the antibody if the polyprotein were cleaved at all Gly-Gly-X sites. Ten proteins would migrate between the polyprotein and p150, and additional smaller proteins would be detected at 120, 86, and 64 kDa. The blot shown in Fig. 2B shows that the sizes of the proteins detected by the antipeptide antibody were again consistent with processing at several Gly-Gly-X sites by the viral protease.
The observation that pp220 could be processed at sites other than those producing the structural proteins p150, p37, p34, and p14 raised the possibility that the incorrectly processed forms could be incorporated into virions. To test this, a crude virus preparation was separated from cellular material by centrifugation, and the distribution of proteins reactive with the antibodies was compared by Western blotting. Figure 3A shows that the cellular material contained several proteins, ranging from 34 kDa to above 220 kDa, that reacted with the antibody raised against p34. The virions contained a single reactive band at 32 to 35 kDa, even when the blot was overexposed. Figure 3B shows the experiment repeated with the antibody specific for p150. Again, the cell lysates contained several proteins reactive with the antibody, but ASF virions contained a single protein, corresponding to the structural protein p150. These data suggested that while the polyprotein was processed at several Gly-Gly-X sites in cells, there was selective packaging of the final p34 and p150 proteins into mature virions.
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FIG. 3. Incorrectly processed forms of pp220 are excluded from virions. Vero cells were infected with BA71v for 16 h or cultured until an extensive cytopathic effect was observed. Following the appearance of cytopathic effect, a crude virus preparation was generated by centrifugation at 500 x g for 15 min to remove cell debris, followed by pelleting at 30,000 x g. Virus pellets (virion) and infected cells (lysate) were lysed in SDS-PAGE sample preparation buffer and resolved by SDS-12.5% PAGE (A) or SDS-7.5% PAGE (B). Gels were Western blotted and probed with antibodies specific for p34 (A) or p150 (B). The molecular masses are shown (in kilodaltons), and pp220 and p34 or p150 are indicated by arrows.
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The next experiments used crude membrane fractionation and a protease protection assay to follow the translocation of pp220 onto membranes and subsequent envelopment of processed products into virions. The assay is based on the assumption that enveloped matrix proteins associated with cellular membranes would be protected from proteolysis by trypsin. To do this, Vero cells infected with ASF virus were pulse labeled with [35S]methionine-cysteine and chased for increasing times. Crude cytosol and postnuclear membrane fractions were prepared at each time point, and membrane fractions were incubated with trypsin in the presence or absence of mild detergent. All samples were then solubilized and immunoprecipitated with antibodies specific for p150.
A ladder of proteins between 280 and 150 kDa and a triplet at 65 kDa were immunoprecipitated from the cytosol (Fig. 4A). This pattern was similar to the bands reactive on Western blots (Fig. 2B) suggesting that they were the same proteins. The intensity of the slower-migrating bands (280 and 220) increased between the pulse and the 0.5-h time point. This was routinely seen in these kinetic experiments and may reflect conformational maturation of pp220. A similar maturation has been observed for p73, the major capsid protein of ASF virus (13). A protein of 40 kDa was observed to associate with pp220 in the pulse but was lost during the chase. A prominent band of approximately 220 kDa was also seen between the 280-kDa polyprotein and p150. The nature of this protein is unknown, but it may be a processing intermediate formed during the production of p150.
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FIG. 4. Subcellular distribution of correctly and incorrectly processed forms of pp220. (A) Vero cells infected for 16 h with BA71v were pulse labeled for 10 min (P) and chased for the indicated times (0.5, 1, and 2 h), and then postnuclear cytosolic and membrane fractions were prepared as described previously (11). The membrane fractions were incubated in the absence (-) or presence (+) of 0.4 mg of trypsin per ml and/or 1% Triton X-100 for 30 min at 37°C, as indicated. Proteolysis was then blocked by the addition of 5 mg of trypsin inhibitor per ml. Membrane and cytosol fractions were lysed in immunoprecipitation buffer and immunoprecipitated with an antibody raised against a peptide representing the C terminus of p150. Immunoprecipitated proteins were visualized by SDS-7.5% PAGE under reducing conditions, followed by autoradiography. (B) Vero cells were infected with the BA71v strain of ASF virus for 16 h. Postnuclear membrane and cytosolic fractions were prepared, and the membrane fraction was treated with trypsin as described above. Representative samples of the total cell lysate (total), cytosolic pool (soluble), and membranes before and after incubation with trypsin were resolved by SDS-12.5% PAGE under reducing conditions, Western blotted, and probed with antibodies specific for p34. The positions of molecular size markers are shown (in kilodaltons).
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It was not possible to immunoprecipitate p34 with the antibodies available, so the cellular fractions were analyzed by Western blotting. Figure 4B shows that both the cytosolic and membrane fractions contained a ladder of proteins reactive with the antibody specific for p34. The cytosolic fraction contained reactive proteins ranging from above 220 kDa down to 70 kDa, with minor bands extending to approximately 35 kDa. The membrane fraction contained a less densely compact ladder of reactive proteins ranging from 220 kDa to 34 kDa. The major difference between the membrane and cytosolic fractions was that the great majority of the final product of processing, p34, was found in the membrane fraction. Significantly, when the membrane fraction was incubated with trypsin (Fig. 4B, right lane), the 220-kDa polyprotein and intermediates were lost from membranes and a major band of 34 kDa survived, suggesting selective protection of p34 against trypsin. Minor bands of lower molecular mass were also seen. Since these were only observed after addition of trypsin, it is likely that they are proteolytic products of pp220 or processing intermediates bound to the membrane fraction. Taken together, the results from both experiments suggested that several pp220 processing intermediates were able to bind cellular membranes, but only p34 and p150 were enveloped.
It has been suggested that pp220 may act as a scaffolding protein (6, 33) during the assembly of ASF virus. Scaffold proteins are incorporated into large procapsids and displaced during capsid maturation or processed by proteases during procapsid to capsid transition (9). The results above showed that the 220-kDa polyprotein and several processing intermediates were found on membranes but were absent from mature virions. It was possible that pp220 and the processing intermediates detected on membranes may represent a population of scaffold-like intermediates present in procapsids early during virus assembly. Evidence for the incorporation of pp220 and the other precursors into large structures indicative of procapsids was sought by using sucrose gradients. It was argued that large procapsids would sediment towards the bottom of sucrose gradients, while unassembled precursors would migrate according to the molecular size predicted for monomeric proteins.
Vero cells infected with ASF virus were solubilized in 1% Brij 35 and analyzed on 10 to 40% sucrose gradients, and each fraction was analyzed by Western blotting with antibodies raised against p34 or p150 (Fig. 5). In total cell lysates (Fig. 5A and B), the bulk of the pp220 polyprotein and the processing intermediates were found near the top of the gradient in fractions 6 to 8, suggesting sizes between 70 and 200 kDa. The polyprotein and the incorrectly processed forms therefore did not form large oligomers indicative of a procapsid. However, the products of correct processing, p34 and p150, migrated towards the bottom of the gradient, suggesting incorporation into large complexes.
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FIG. 5. Incorrectly processed forms of pp220 are excluded from large structures indicative of virus precursors. Vero cells were infected with BA71v for 16 h. Total cell lysates and cytosol and membrane fractions were prepared as described for Fig. 4, solubilized in 1% Brij 35 in immunoprecipitation buffer, and centrifuged on a 10 to 40% sucrose gradient at 200,000 x g for 20 h at 4°C. Samples taken from each fraction were resolved by SDS-PAGE with 12.5% (A, B, and C) or 7.5% (D, E, and F) polyacrylamide, Western blotted, and probed with antibodies specific for p34 (A, B, and C) or p150 (D, E, and F). The positions of molecular size markers are shown on the right (in kilodaltons), and pp220 and p34 or p150 are indicated with arrows.
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The sizes of complexes containing p34 and p150 were determined in more detail with 10 to 70% sucrose gradients. The gradients were calibrated with foot and mouth disease virus particles and bluetongue disease virus cores with approximate molecular masses of 7,600 and 59,000 kDa, respectively (1, 18, 20). Figures 6A and B compare the migration of these particles with the distribution of proteins detected by the antibodies specific for p34 and p150, respectively. The pp220 polyprotein and processing intermediates remained at the top of the gradients, while p34 and p150 protein were found in fractions 1 to 7. Most of the protein was recovered in fractions 1 and 2, suggesting assembly into a range of oligomers with molecular masses ranging from 7,600 kDa to over 59,000 kDa. This was consistent with the incorporation of p34 and p150 into virion precursors of sizes similar to those described previously for the major capsid protein, p73 (12). The exclusion of pp220 and processing intermediates from large procapsid-like structures suggests that processing occurs before, rather than after, assembly of p34 or p150 into virions.
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FIG. 6. Only correctly processed forms of pp220 assemble into large structures indicative of a viral matrix. Vero cells were infected with BA71v for 16 h. Total cell lysates were solubilized in 1% Brij 35 in immunoprecipitation buffer, centrifuged on a 10 to 70% sucrose gradient, and centrifuged at 79,000 x g for 2.5 h at 4°C. Samples taken from each fraction were resolved by SDS-PAGE with 12.5% (A) or 7.5% (B) polyacrylamide, Western blotted, and probed with antibodies specific for p34 (A) or p150 (B). The positions of molecular size markers are shown on the right (in kilodaltons), and pp220 and p34 or p150 are indicated with arrows. The gradients were calibrated with foot and mouth disease virus (FMDV, 7,600 kDa) and bluetongue disease virus (BTV, 59,000 kDa) cores as described previously (12).
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The published sequence of the CP2475L reading frame encoding pp220 was used to predict the sizes of the proteins formed by cleavage at all 19 Gly-Gly-X sites (Fig. 1C) (36), and these were compared with those seen on Western blots. The limitations of the SDS-PAGE system made it difficult to resolve the precise molecular weights of all the proteins, particularly for clusters of proteins of similar size. But if cleavage occurred at all 19 Gly-Gly-X sites, the antibody raised against p34 would be expected to bind to 34 proteins broadly distributed between 280 and 34 kDa. Similarly, the antibody specific for the C terminus of p150 would bind 16 proteins, most of which would be between 280 and 120 kDa. The distributions of proteins recognized by the antibodies on Western blots were in broad agreement with the sizes predicted for processing of Gly-Gly-X sites by the viral protease.
It was also possible to determine the size of the smallest protein that would be reactive with the antibodies, and for both antibodies, the smallest protein seen on Western blots was the size predicted to be produced by proteolysis at the Gly-Gly-X sites nearest the antibody binding site. Taken together, the results suggest that the viral protease cleaves pp220 at multiple Gly-Gly-X sites and that proteins detected on Western blots result from this processing rather than from proteolysis by cellular proteases.
Interestingly, even though infected cells contain many different processed forms of pp220, only the structural proteins p34 and p150 were detected in the mature virions. The structural proteins and their processing intermediates are all derived from the same polyprotein and have the same amino acid sequences. It was interesting, therefore, to ask how the structural proteins are packaged selectively into virions while incorrectly processed forms are excluded. For p34, the problem is slightly less complex than for p150. The p34 protein does not have internal Gly-Gly-X sites, and as long as proteolytic processing was complete, p34 would eventually be generated by the viral protease for packaging into virions. The p150 protein, however, has seven internal Gly-Gly-X sites that need to be protected from the viral protease, while cleavage at the 12th Gly-Gly-X site is needed to release the mature protein.
Subcellular fractionation suggested that membrane association was important for the correct processing and selective recruitment of p34 into virions. Investigation of the steady-state distribution of proteins reactive with the antibody raised against p34 showed that the p34 protein was recovered only from the membrane fraction. In contrast, the processing intermediates reactive with the antibody were found in both the cytosol and membrane fractions. Significantly, of the membrane-bound pool of processed forms, only p34 was protected from trypsin, and only p34 was incorporated into large structures indicative of assembling virions.
The time course of recruitment of p150 onto membranes was studied. The bulk of the intact pp220 polyprotein and the different processed forms remained in the cytosol, but within 1 h of synthesis, approximately one third of the p150 produced was recovered from membranes. At later times, low levels of precursors were also seen in the membrane fraction, but only p150 was protected from trypsin, suggesting incorporation into virions.
The recovery of a large proportion of the cellular pool of the pp220 protein from the cytosol was surprising. The pp220 polyprotein is myristoylated at the N terminus (2, 33), and myristoylation would offer a means of targeting the polyprotein to membranes. This is supported by the observation that pp220 expressed transiently in cells binds membranes (4). Interestingly, proteolysis of the polyprotein at the first Gly-Gly-X site removes myristate and five amino acids from the N terminus (Fig. 1A) of the protein.
One explanation for the presence of a cytosolic pool of pp220 in infected cells is that the newly synthesized pp220 binds to membranes via myristate, but the protein is subsequently released following proteolysis at this first Gly-Gly-X site by the viral protease. This would not happen during transient transfection of cells because the viral protease responsible for processing is absent, and the protein remains attached to membranes. Interestingly, the transiently expressed pp220 aggregates if the myristoylation signal is removed (4). In our experiments, the polyprotein recovered from the cytosolic fraction of infected cells did not aggregate, because it migrated as a soluble protein on sucrose gradients. This suggests that there is a mechanism to prevent the aggregation of non-membrane-bound pp220 in infected cells.
We have shown that the aggregation of p73, the major capsid protein of ASF virus, is prevented by a virally encoded chaperone (13). A similar mechanism may operate for pp220. Interestingly, loss of the first five amino acids after processing by the viral protease means that many of the proteolytic products of pp220 and the final structural proteins p34 and p150 also lack myristate (33, 34). The observation that these and several other processed forms are recovered with the membrane fraction means that a mechanism other than myristate retains them on cellular membranes. This could involve cellular or virally encoded proteins targeted to membranes within virus assembly sites. Another possibility is that the myristate group does not function as a membrane anchor, but plays a different role in virus assembly and/or structure. Several myristoylated viral proteins that have a role in virus assembly/structure but are cytosolic have been described (21, 34).
Figure 7 depicts two mechanisms of ensuring the selective packaging of the structural proteins and exclusion of processing intermediates. In each case, the correct processing is predicted to expose structural features that are required for assembly. These structures could allow the proteins to assemble with each other during the formation of the virus matrix layer or facilitate assembly with other structural proteins previously targeted to assembly sites. If these structural features were masked (or missing) in the polyprotein and incorrectly processed forms, these proteins would be excluded from the virion. The polyprotein is translated in the cytoplasm, and processing of the polyprotein could either occur in the cytosol or on the endoplasmic reticulum membrane. Processing would reveal assembly and packaging signals, allowing assembly into virions. In a second possibility, the membrane-bound polyprotein exposes assembly and packaging signals and moves into viral precursors or procapsids, where it acts as a scaffold. Subsequent proteolytic processing in the procapsid allows assembly of the correctly processed forms, while the incorrectly processed forms lack packaging signals and are ejected.
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FIG. 7. Mechanisms for the selective packaging of correctly processed products of pp220. The polyprotein is translated in the cytoplasm; at this point, and assembly sites are masked (hatched ). Proteolytic processing could occur in the cytosol (a and b) or on the membrane (d). This reveals assembly targeting sequences ( ), and the correctly processed proteins move into the assembling virion (c). In a second model, the polyprotein reveals assembly targeting sequences ( ) before proteolytic processing and moves into the virion as a scaffold (e) with the viral protease. Correctly processed forms retain assembly targeting sequences and remain in the virion (f), while incorrectly processed forms are ejected (g).
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Present address: Department of Cell Biology, Washington University Medical School, St. Louis, MO 63110. ![]()
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