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Journal of Virology, January 2003, p. 1281-1291, Vol. 77, No. 2
0022-538X/03/$08.00+0 DOI: 10.1128/JVI.77.2.1281-1291.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Gene Therapy Laboratories, Keck School of Medicine, University of Southern California, Los Angeles, California 90033
Received 14 June 2002/ Accepted 22 October 2002
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MuLV Env also undergoes a second cleavage event in the cytoplasmic tail of TM that is essential for protein function. The C-terminal 16 amino acids of the cytoplasmic tail, the R peptide, is removed from a subset of the virion TM proteins by the viral protease (22, 27, 60). This results in an Env protein that is inherently more fusogenic than the full-length protein, causing, for example, cell-cell fusion to occur when it is expressed in NIH 3T3 cells (29, 53, 54). It has been suggested that the virus has adopted this strategy of regulating Env fusogenicity in order to limit the expression of a potentially cytotoxic molecule on the cell surface (53, 54). Similar processing of Env cytoplasmic tails has been observed in the Mason-Pfizer monkey virus (M-PMV), the gibbon ape leukemia virus (GaLV), and the equine infectious anemia virus (4, 7, 56); in addition, truncated M-PMV and GaLV Env proteins are more fusogenic than their full-length counterparts (3, 7). Truncations of the long cytoplasmic domains of lentiviral Env proteins occur under certain culture conditions (5, 31, 32, 59), and an increase in Env fusogenicity has been reported for truncated versions of simian immunodeficiency virus (SIV), human immunodeficiency virus type 1 (HIV-1), and HIV-2 Envs (18, 45, 63, 64, 68, 80).
The current model of retroviral fusion is based largely on data obtained from structural and functional studies of the class I fusion proteins, influenza hemagglutinin (HA) and HIV-1 Env (reviewed in references 13 and 61). A central feature of the model is that the proteins are first primed to a metastable state, which is then ready to be activated to a fusion-promoting state following exposure to an appropriate trigger. HA consists of two covalently linked subunits, HA1 and HA2, organized in a trimeric complex. Cleavage of these proteins from the HA0 precursor causes structural rearrangements to occur that are necessary to achieve the metastable conformation and which insert the fusion peptide at the N terminus of HA2 into a charged pocket. Similarly, precursor processing is an essential event for the maturation of fusion proteins from retroviruses, orthomyxoviruses, and paramyxoviruses (12, 19, 30, 35, 41, 57), although it appears to be dispensable for the activity of the Ebola virus glycoprotein (69).
The trigger that allows a fusion protein to adopt a fusogenic conformation is typically either exposure to a low-pH environment (pH-dependent viruses) or the result of an interaction with its cell-surface receptor at neutral pH (pH-independent viruses). For the prototype influenza HA, exposure of the virus to low pH following internalization into an endosome causes major structural rearrangements to occur, including the partial displacement of HA1, the creation of a six-helix bundle in HA2, and the translocation of the fusion peptide towards the target cell membrane. Both the fusion peptide and the six-helix bundle are believed to be common features of class I fusion proteins, and structural studies have indicated that six-helix bundles can be formed in the transmembrane proteins of retroviruses, paramyxoviruses, and filoviruses (13). The adoption of a fusogenic formation can also be a more complex event, as the HIV and SIV Envs require sequential interactions with both CD4 and a coreceptor (33, 71), avian leukosis virus uses both receptor interaction and a subsequent low-pH step (44), and certain paramyxoviruses exhibit interactions between the HN and F proteins (10, 26). For the majority of retroviral Env proteins, the trigger is believed to be binding to a cell surface receptor at neutral pH (40). Alterations in Env proteins following interactions with their receptors have been detected for avian leukosis virus (20) and MoMuLV (28), and the dissociation of SU from TM (shedding) has been observed following the addition of soluble CD4 to HIV-1 virions (2, 43).
The mechanism whereby R peptide cleavage enhances fusogenicity is not well understood, but several mechanisms can be envisioned. Since the R peptide contains a putative Y-X-X-Hy internalization signal (where X is any amino acid and Hy is a bulky hydrophobic residue), its removal may simply serve to stabilize Env on the cell surface and thereby allow a greater number of membrane fusion events to occur. Increased steady-state levels of Env have been reported following the mutation of similar tyrosine motifs in the cytoplasmic tails of several retroviruses (15, 21, 34, 38, 46, 67), and the increased fusion seen for certain point and truncation mutants of retroviral Envs have previously been attributed to effects on cell surface levels. While a correlation between the surface density and the extent of cell-cell fusion has been documented for the HIV-1 Env (37), mutation of a tyrosine in the HIV-1 tail has also been shown to give rise to a protein with inherently different fusion properties (67).
It is also possible that the R peptide regulates Env function by interacting with other viral or cellular proteins or with the membrane itself. Such interactions could restrain or localize the protein in such a way as to interfere with the formation or widening of a fusion pore (6). In support of such a role, the R peptide has been shown to be palmitoylated (47), which could promote an association between the full-length cytoplasmic tail and the plasma membrane. In addition, the R peptide suppression of fusion appears to be transferable between certain Env proteins, which suggests an interaction with a common factor. Even though there is only 33% homology between the R peptides of MuLV and GaLV, we have found that their R peptides are interchangeable (7). More intriguingly, the suppression of fusion conferred by the MuLV R peptide may be transferable to less closely related proteins, as its addition to a truncated, hyperfusogenic SIV Env reduced fusogenicity (72).
In an alternative scenario, the presence of the R peptide may function to mask a fusion-promoting structure located in the more upstream region of the cytoplasmic tail. In support of this hypothesis, it is known that MoMuLV Env with no cytoplasmic tail is less fusogenic in cell-cell syncytium assays than the form lacking the R peptide (29, 42, 52), and a deletion of residues 603 to 606 in this upstream region can inhibit the fusion activity of both full-length and R-peptide-truncated proteins (29, 79). In addition, both insertions in this region (36) and point mutations (M. M. Januszeski and P.M. Cannon, unpublished data) can enhance the fusogenicity of a full-length Env, possibly by preventing an interaction with the R peptide. However in vitro experiments to analyze fusion pore formation do not support the model of a fusion-enhancing structure in the truncated tail, as a tailless Env was found to be just as fusogenic as a protein lacking the R peptide (42).
Whatever the initial consequence of R peptide removal for the cytoplasmic tail of MuLV Env, we have previously suggested that the increase in fusogenicity is a direct result of changes in the ectodomain of the protein and that R peptide cleavage is required for Env to achieve a metastable state (79). Our model is based on the finding that although an Env lacking the R peptide can stimulate fusion in trans within a mixed MuLV Env oligomer (containing both full-length proteins and proteins lacking the R peptide) (55, 78, 79), the enhancement of fusogenicity requires certain sequences to be present in the truncated protein. Specifically, mutations in either the upstream region of the tail or two separate regions in the ectodomain of TM prevent this effect when present on the truncated monomer but are tolerated when present on the full-length partner (79). These findings led us to propose that R peptide cleavage removes a conformational constraint on the cytoplasmic tail of the protein, with the resulting change in this domain being transmitted through to the ectodomain of the protein. Intriguingly, the two mutations in the ectodomain of TM that we mapped as being necessary for the transmission of this signal lie in two putative helical domains (equivalent to HR1 and HR2 in the HIV-1 Env) that are presumed to form the six-helix bundle that is characteristic of the fusion-competent forms of class I proteins.
A prediction of our model is that full-length Env proteins and those lacking the R peptide would have different overall structures. We now report direct biochemical and immunological evidence that the cytoplasmic tail and the membrane-spanning regions of MoMuLV Env can affect both the conformation of the ectodomain of the protein and the strength of the SU-TM interactions. This suggests that an event in the cytoplasmic tail, namely, R peptide processing, has long-range effects on the ectodomain of the protein which ultimately regulate the ability of the protein to be triggered to a fusogenic state following receptor interaction.
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Env constructs.
The cytomegalovirus promoter expression plasmid for the wild-type MoMuLV Env protein, CEE, was previously described (39). The truncation mutants CEETR, CEET, and GLA15E were derived from CEE as described elsewhere (52, 53). The cytoplasmic tail point mutants, L618A and Y622A, were derived from CEE by PCR mutagenesis. Plasmid CEE
Env is the backbone expression plasmid for CEE, obtained by deleting the MoMuLV Env gene from plasmid CEE by EcoRI digestion and religation. The Env constructs used are shown in Fig. 1.
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FIG. 1. Schematic of Env proteins. (A) The 632-amino-acid MoMuLV Env protein comprises SU and TM polypeptides. The membrane-spanning region of the TM protein is shown (M), while the cytoplasmic tail consists of the R peptide (R) and the mature tail (T) remaining after R peptide removal. Construct GLA15E retains eight amino acids of the membrane-spanning region linked to a GPI anchor. (B) Amino acid sequence of the cytoplasmic tail of MoMuLV Env, showing the substitutions made in the indicated mutants. A putative endocytosis motif in the R peptide is boxed.
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Env was used to bring the total amount of DNA to 15 µg. Forty-eight hours posttransfection, the cells were harvested with enzyme-free cell dissociation solution and washed with phosphate-buffered saline (PBS) (Sigma, St. Louis, Mo.). Cells (5 x 105) were incubated with 250 µl of either undiluted anti-SU rat hybridoma supernatant 83A25 (16) or undiluted anti-SU mouse hybridoma supernatant 273 (National Institutes of Health AIDS Research and Reference Reagent Program) (77) for 1 h at 4°C. The cells were washed in PBS plus 10% goat serum (PBSG) and then incubated at 4°C for 1 h in a 1:100 dilution of fluorescein isothiocyanate-labeled goat anti-mouse immunoglobulin G (Kirkegaard and Perry Laboratories, Gaithersburg, Md.) diluted in PBSG. Following a final wash with PBSG, the cells were resuspended in 4% paraformaldehyde in PBS. Samples were analyzed by flow cytometry by using a Becton Dickinson FACScan, and absolute fluorescence values were obtained by using latex beads of known fluorescence intensities (Sphero Rainbow Particles 6.7-µm-diameter beads; Spherotech, Inc., Libertyville, Ill.) as described previously (29). The absolute fluorescence value of each individual sample was normalized to the value obtained for the wild-type MoMuLV Env protein within the same experiment.
Cell-cell fusion assay.
293T cells (2 x 106) were plated in a 60-mm tissue culture dish marked with 2- by 2-mm grids (Corning Glass Works, Corning, N.Y.) and transfected with various amounts of Env expression plasmids. In all cases, the total amount of plasmid DNA used in the transfection was made to total 15 µg by using plasmid CEE
Env. Twenty-four hours after transfection, 6 x 105 XC cells were added to the 293T cell cultures. After incubation for an additional 18 h, the cells were fixed and stained with 1% methylene blue in methanol. The number of nuclei recruited into syncytia (fused cell masses containing four or more nuclei) in a 20-mm2 area was counted under a light microscope.
Retroviral vector production and titer determination. Retroviral vectors were produced by transient transfection of 293T cells by calcium phosphate precipitation, essentially as described previously (23, 62). The plasmids used were the MoMuLV gag-pol expression plasmid pCgp (24), the retroviral vector pCnBg (23), which expresses lacZ and neo, and an Env expression plasmid. Vector supernatants were collected 48 h posttransfection and filtered through a 0.45-µm filter. Titers were determined by ß-galactosidase expression as previously described (39).
Western blot analysis. Retroviral vectors were harvested from the supernatants of transfected 293T cells by centrifugation through 4 ml of 20% (mass/vol) sucrose at 4°C for 2 h at 30,000 rpm by using an SW41 rotor (Beckman Instruments, Inc., Palo Alto, Calif.). In addition, transfected 293T cells in a 60-mm dish were washed with PBS, dissociated by using enzyme-free cell dissociation buffer (Gibco-BRL), and lysed in 100 µl of lysis buffer (20 mM Tris-HCl [pH 7.5], 1% Triton X-100, 0.05% sodium dodecyl sulfate [SDS], 5 mg of sodium deoxycholate/ml, 150 mM NaCl, and 1 mM phenylmethylsulfonyl fluoride [Sigma]) at 4°C for 10 min. Following centrifugation in an Eppendorf microfuge at 16,000 x g at 4°C for 10 min, the cleared supernatants were collected. Viral pellets and cell lysates were deglycosylated by incubation with 500 U of N-glycosidase F (NEB, Beverly, Mass.) for 1.5 h at 37°C. All samples were diluted 1:1 in 2x SDS gel loading buffer (Novex, San Diego, Calif.) plus 10% 2-mercaptoethanol, boiled for 5 min, and electrophoresed in 14% polyacrylamide gels (Novex). The proteins were transferred to an Immobilon P polyvinylidene fluoride transfer membrane (Millipore Corp., Bedford, Mass.) and blocked overnight at 4°C with blocking buffer (5% dried milk in PBST [0.01 M PBS {pH 7.4}, 0.25% Tween 20]).
For the detection of specific proteins, the membranes were cut into three strips that separately contained the SU, capsid (CA), or TM proteins and were subjected to the following detection protocols. All incubations were performed at room temperature by using antibodies or protein G at the stated dilutions in blocking buffer. Each wash step comprised three separate 10-min washes in PBST, although the wash temperatures varied as described. For the detection of SU, the relevant membrane strips were incubated for 3 h in a 1:400 dilution of goat anti-gp70 antibody (lot 79S656; Quality Biotech, Camden, N.J.), washed at 37°C, incubated for 1 h with 0.125 µCi of 125I-labeled protein G/ml (NEN Life Science Products, Inc., Boston, Mass.), and then washed again at 37°C. CA proteins were labeled by a 3-h incubation in a 1:2,000 dilution of goat anti-p30 antibody (lot 78S221; Quality Biotech), washed at room temperature, incubated for 1 h with 2 µCi of 125I-labeled protein G/ml, and then washed again at room temperature. TM proteins were labeled by a 1.5-h incubation in a 1:2,000 dilution of rat monoclonal anti-p15E antibody (50), washed at 4°C, incubated for 1 h in a 1:250 dilution of goat anti-rat IgG (Jackson ImmunoResearch Laboratories, Inc., West Grove, Pa.), washed at 4°C, incubated in 0.5 µCi of 125I-labeled protein G/ml for 1 h, and finally washed again at 4°C. The membranes were then exposed overnight to a PhosphorImager screen, and specific bands were detected by using a PhosphorImager 445 SI (Molecular Dynamics, Sunnyvale, Calif.).
Protein biotinylation and immunoprecipitation. Fifty-percent-confluent 293T cells plated in 100-mm tissue culture dishes were transfected with 30 µg of an Env expression plasmid as described above. Forty-eight hours later, the cells were harvested with enzyme-free cell dissociation solution, washed three times with ice-cold PBS (pH 8.0), and resuspended at a concentration of 2.5 x 107 cells/ml in PBS. The cells were then incubated with 0.5 mg of sulfo-N-hydroxysuccinimide-biotin/ml (Pierce, Rockford, Ill.) at 4°C for 1 h, followed by washing three times with ice-cold PBS. The cells were then lysed with 1 ml of immunoprecipitation buffer (10 mM NaPO4 [pH 7.4], 150 mM NaCl, 1% Triton X-100, 0.1% SDS, 0.5% sodium deoxycholate, 1 mM phenylmethylsulfonyl fluoride, and 0.2 U of aprotinin/ml) on ice for 20 min and centrifuged for 10 min at 4°C in an Eppendorf microcentrifuge at 16,000 x g. The supernatants were collected and incubated with 4 µl of goat anti-gp70 antiserum (lot79S656; Quality Biotech) together with 20 µl of protein G-Sepharose (Sigma) in a total volume of 4 ml of immunoprecipitation buffer. The samples were incubated overnight at 4°C and the Sepharose beads were pelleted by a brief centrifugation and washed once with wash buffer 1 (100 mM Tris-Cl, [pH 7.5], 150 mM NaCl, 2 mM EDTA [pH 8.0], and 0.2% NP-40) and once with wash buffer 2 (100 mM Tris-Cl [pH 7.5], 500 mM NaCl, 2 mM EDTA [pH 8.0], and 0.2% NP-40). The samples were then resuspended in 2x SDS gel-loading buffer with 10% 2-mercaptoethanol, boiled for 5 min, and briefly recentrifuged, and the supernatants were electrophoresed on 14% polyacrylamide gels. Resolved proteins were transferred to Immobilon P membranes and blocked as described above. The membranes were then incubated at room temperature for 1 h with 125I-conjugated streptavidin at a 1:200 dilution (Amersham Pharmacia Biotech, Piscataway, N.J.) and washed with PBST. The labeled proteins were quantitated by using a PhosphorImager 445 SI and ImageQuant software (Molecular Dynamics) following overnight exposure.
35S-labeling and immunoprecipitation. For the analysis of cellular proteins, 50%-confluent 293T cells plated in 100-mm tissue culture dishes were transfected with 30 µg of an Env expression plasmid, as described above. Fourteen to eighteen hours later, the cells were washed and fresh medium was added, supplemented with 10 mM sodium butyrate. Eight to twelve hours later, the cells were incubated for 30 min with fresh DMEM without methionine or cysteine, followed by the addition of 100 µCi each of [35S]methionine and [35S]cysteine (Amersham Pharmacia Biotech). Twelve to eighteen hours later, the cells were harvested with enzyme-free cell dissociation solution, washed with ice-cold PBS, lysed, and immunoprecipitated with goat anti-SU antibody (lot 79S656; Quality Biotech), as described above.
Calculation of shedding indexes. Fifty-percent-confluent 293T cells in a 100-mm dish were transfected with 20 µg of an Env expression plasmid and 10 µg of plasmid pCgp and labeled with 35S as described above. The culture supernatants were collected 2 days after transfection, and a 1.5-ml aliquot was stored at 4°C (total supernatant), while an additional 1.5-ml aliquot was diluted with 4 ml of DMEM, layered on top of 4 ml of 20% (mass/vol) sucrose, and centrifuged at 30,000 rpm in an SW41 rotor for 2 h at 4°C. Following centrifugation, the supernatant remaining on top of the 20% sucrose was collected (cleared supernatant), while the pellet was resuspended in 1 ml of immunoprecipitation buffer (viral pellet). All three samples were immunoprecipitated with goat anti-SU antibody as described above, and the proteins were resolved on 14% polyacrylamide gels. Specific bands were detected and quantitated with a PhosphorImager 445 SI and ImageQuant software following overnight exposure. Shedding indexes were calculated as the ratio of the SU signals immunoprecipitated from the cleared supernatants to those immunoprecipitated from the total supernatants.
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TABLE 1. Properties of Env proteins
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In agreement with previous reports, we observed that artificially removing the R peptide produced a highly fusogenic protein, with construct CEETR inducing 5 to 10 times the number of syncytia as the full-length protein, depending on the amount of DNA transfected. Similarly, mutants CEET and L618A were also found to be more fusogenic than the wild-type protein for both input amounts of DNA. Although mutant Y622A exhibited a small enhancement of fusion at the lower amount of input DNA, it was not significantly different from the wild-type Env at the higher amount of DNA. Finally, the GPI-linked ectodomain construct, GLA15E, was always observed to be nonfusogenic, despite high levels of CSE in the transfected 293T cells. These results confirm that the membrane-spanning region of TM is essential for Env-mediated fusion (52, 65). The ability of retroviral vectors carrying the various Env proteins to transduce NIH 3T3 cells was also measured, and our results are in good agreement with previous reports (29, 52, 53).
MoMuLV Env proteins lacking the R peptide or the cytoplasmic tail are inherently more fusogenic than the full-length protein at equivalent levels of CSE. Since the R peptide contains a putative endocytosis motif, Y622HQL, it is possible that removal of the R peptide enhances the cell-cell fusion activity of MoMuLV Env simply by increasing its steady-state levels on the cell surface. Indeed, our data for the Y622A mutant showing enhanced fusogenicity compared to the wild-type protein at low levels of transfected DNA suggested that this may be the case. To address this possibility more rigorously, we assessed whether the Y622A substitution resulted in increased CSE levels, and we examined whether this correlated with an increased ability to induce syncytia.
To precisely compare the relationship between CSE and fusogenicity, we first measured the steady-state surface levels of the different Env proteins when expressed in 293T cells as we varied the amount of Env expression plasmids used in the transfections. CSE was measured by fluorescence-activated cell sorter (FACS) analysis by using an antibody specific for the N terminus of the SU subunit (77). We believe that this antibody gives the most accurate relative measurements of CSE when different Env proteins are compared (see below
). Our use of 293T cells for these measurements was necessary because these cells do not express the ecotropic receptor, thereby eliminating any artifacts caused by secreted or dissociated SU rebinding to the cell, as we have previously described (76).
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TABLE 2. Antibody recognition of cell surface SU
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FIG. 2. Relationship between cell surface levels of Env and cell-cell fusion activities for different Env constructs. (A) Effect on CSE of increasing the amount of plasmid DNA transfected into 10-cm plates of 293T cells. CSE was measured by FACS analysis by using antibody 273. (B) Relationship between CSE levels in 293T cells and cell-cell fusion activity in the 293T-XC cocultivation system. Fusion activity was expressed as the number of nuclei recruited into syncytia in a 20-mm2 area. All data points are the averages of at least three independent experiments.
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FIG. 4. Deglycosylated cell lysates and virions. 293T cells were transfected with MuLV Gag-Pol plasmids and the indicated Env constructs. Both cell lysates and pelleted viral supernatants were deglycosylated and subjected to SDS-PAGE. Specific proteins were detected by using appropriate antibodies. The various TM proteins run at different sizes due to the truncations they contain. In addition, the wild-type protein, CEE, is present in virions in both full-length and R- peptide-truncated forms. PrEnv is the uncleaved precursor Env protein, Pr85.
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Env truncations affect antibody recognition of the SU subunit. We have previously proposed that removal of the R peptide may enhance Env fusogenicity by promoting a conformational change in the ectodomain of the protein (79). In order to test this hypothesis further, we used antibody recognition profiles to look for evidence of gross differences in the structures of cell surface-expressed Env between the wild-type and mutant Env proteins.
Antibody binding to SU has previously been used to probe for conformational differences between receptor-bound and unbound SU (28). Two different monoclonal antibodies are available that recognize the C-terminal half of the SU protein from the endogenous defective MuLV, Fv-4r. Although both antibodies recognize soluble SU bound to its receptor at 4°C, warming to 37°C promotes dissociation of only one antibody, which is suggestive of a receptor-induced conformational change in the bound SU (28). In a similar approach, we measured the ability of two different anti-SU antibodies to recognize the panel of truncation mutants expressed on the surface of transfected 293T cells. Antibody 83A25 is specific for the C terminus of SU (16), while antibody 273 recognizes the N terminus of SU (77).
Transfected 293T cells were reacted with each of the antibodies at 4°C, and binding was analyzed by FACS. Absolute fluorescence values were obtained for each antibody and normalized to the value obtained with the wild-type protein. Examination of the results revealed discrepancies between the normalized values obtained with the N- and C-terminal-specific antibodies for each of the mutants, and these differences are highlighted in the N/C relative recognition ratios shown in Table 2. Notably, the R peptide-truncated protein, CEETR, had the greatest discrepancy relative to the full-length protein (P = 0.0003); although CEETR recognition by the N-terminal antibody was increased by almost twofold over that of the full-length protein, recognition by the C-terminal antibody was actually slightly lower. This observation is consistent with the form of the protein that lacks the R peptide having an arrangement of its SU components that is markedly different from that of the full-length protein.
Mutant L618A, which exhibits high fusogenic activity despite the presence of a full-length cytoplasmic tail, also resulted in a ratio that was highly significant when compared to the value for CEE (P = 0.009). Interestingly, the difference between the ratios for L618A and CEETR was also highly significant (P = 0.006), suggesting that the underlying causes of the increased fusogenicities of CEETR and L618A may be different. It is noteworthy that CEETR is always a more fusogenic protein than L618A (Table 1 and data not shown).
Although greater N/C ratios could result from either increased exposure of N-terminal epitope(s) or reduced availability of C-terminal epitopes, we favor the latter explanation because the C terminus is the region of SU involved in interactions with TM (51), so it is more likely that conformational changes triggered by alterations in TM would affect this domain. This possibility is consistent with a model whereby R peptide cleavage alters the conformation of the overall Env protein complex and thereby alters the accessibility of different SU epitopes.
Env truncations alter biotinylation of the ectodomain. We next examined whether we could detect gross differences in the structures of the ectodomains of the mutant Env proteins by using direct biochemical labeling with the membrane-impermeable biotinylation reagent sulfo-N-hydroxysuccinimide-biotin. This chemical reacts with free primary amine groups in lysines or arginines exposed at the surface of a protein, and the degree of labeling can be quantitated by using secondary detection with 125I-conjugated streptavidin. We immunoprecipitated the labeled proteins by using a polyclonal anti-SU antibody that has previously been shown to immunoprecipitate both SU and the associated TM subunit (78).
In order to perform such an analysis, we needed to control for several variables that would affect the strength of the biotinylation signals obtained for the different Env mutants. These included differences in the processing and transport rates and overall stabilities of the truncated proteins, which could reduce their steady-state levels on the cell surface and therefore give a lower biotinylation signal. Similarly, changes in the ability of the TM subunit to remain associated with SU during the coimmunoprecipitation procedure would specifically lower the TM biotinylation signal. To control for these possibilities, we also labeled total cellular proteins with 35S and immunoprecipitated both SU and the associated TM proteins from lysates by using the same anti-SU antibody (Fig. 3). The immunoprecipitated proteins were resolved by SDS-polyacrylamide gel electrophoresis (PAGE), and the biotinylated samples were further detected by using 125I-conjugated streptavidin. The amount of radioactivity (35S or 125I) in each band was obtained by PhosphorImager analysis and made relative to the CEE values. From these data, we were able to calculate the biotinylation efficiency for each SU and TM subunit and, furthermore, to compare the ratio of biotinylation of the SU and TM subunits for each mutant (Table 3).
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FIG. 3. Biotinylation of SU and TM from truncated Env mutants. Env proteins were expressed in 293T cells by transient transfection. Total cellular proteins were radiolabeled with 35S, or surface-expressed proteins were biotinylated with a membrane-impermeable reagent. Both SU and TM subunits were immunoprecipitated by using a polyclonal anti-SU antiserum and subjected to SDS-PAGE. Biotinylated proteins were detected by using 125I-streptavidin.
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TABLE 3. Biotinylation of cell surface SU and TM
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During these analyses, we observed that the SU protein from CEET ran faster on gels than the other SU proteins (Fig. 3). In order to investigate whether this was due to differences in N glycosylation, we ran gels of deglycosylated cell extracts and virions (Fig. 4), which confirmed that this was indeed the case. Alterations in the N glycosylation state of a protein are frequent correlates of aberrant processing and transport, and these gels also highlighted the fact that CEET was less efficiently processed from the precursor Env to SU. Taken together, these findings indicate that the complete loss of the cytoplasmic tail results in defects in transport, processing, and glycosylation for the MoMuLV Env.
The gels of deglycosylated proteins also revealed that GLA15E had a strong tendency to shed the SU subunit. Much of this protein was lost from the virion fraction, despite the retention of a strong TM signal (Fig. 4). Such a phenotype would be expected to reduce the ability of TM to stay associated with SU, which is in agreement with the low overall levels of TM that we were able to coimmunoprecipitate with SU for either the 35S- or biotin-labeled proteins (Table 3).
An additional feature that was noted was that the radiolabeled TM proteins ran as doublets (Fig. 3). Since the assays were performed in the absence of the viral protease and the doublets were observed for both full-length and truncated constructs, the size difference could not be due to the removal of the R peptide. The doublet was especially pronounced for mutant CEET, where the two forms of radiolabeled TM were equally represented, and a doublet was also seen with the biotin-labeled protein. The two different forms of TM could result from posttranslational modifications, such as glycosylation or palmitoylation, or it could be caused by the presence of an additional protease recognition site. However, we consider it unlikely that differences in glycosylation were the cause of the doublet pattern in TM. Although one consensus sequence for an N-linked glycosylation site exists in TM (N569RSP), it is located right at the boundary of the membrane-spanning domain, which stretches from S571 to N600 (49), and the presence of the C-terminal proline is predicted to block utilization of the motif (1). Also, when the proteins were deglycosylated, although the lower band virtually disappeared from the gels, no shift in size was observed for the upper, more prominent band following this treatment (Fig. 4 and data not shown).
Instead, we consider it more probable that the two bands represent palmitoylated and nonpalmitoylated forms of TM. A palmitoylated cysteine has been identified in the membrane-spanning region of the MoMuLV TM (73). Since CEET is truncated only 4 amino acids beyond this residue, and since it is known that the removal of sequences downstream of palmitoylation sites can reduce the efficiency of this modification (25), it seems likely that the more pronounced lower band observed for CEET represents a nonpalmitoylated and therefore faster-running form of the protein.
Env truncations weaken the association of the SU and TM subunits. An alteration in the interactions between the SU and TM subunits that facilitates exposure of the fusion protein and subsequent virus-cell fusion may occur following binding of retroviral Env proteins to their receptors. It has previously been shown that treating HIV-1 Env with soluble CD4 receptor induces the loss of SU (58). By analogy, we hypothesized that the changes we detected in the Env ectodomain following R peptide cleavage could also alter the strength of the SU-TM interaction, and these alterations could account for the greater fusogenicity of the protein lacking the R peptide. We examined this possibility by assessing the tendency of SU to be shed from virions in response to sheer stress.
Radiolabeled virions were harvested, and equal fractions were either untreated or pelleted by ultracentrifugation through 20% sucrose. SU was immunoprecipitated from the untreated supernatants, the pelleted (virion) fractions, and the cleared supernatants remaining after centrifugation that are expected to contain any dissociated SU. A shedding index was calculated as the ratio of SU immunoprecipitated from the cleared supernatants to that immunoprecipitated from the untreated supernatants. The TM subunit could be coimmunoprecipitated with SU only from total supernatants or pelleted fractions (data not shown), confirming that these fractions alone contained viral particles, while the cleared supernatant contained only dissociated SU. As a control, we included the TM point mutant L493V, which has previously been demonstrated to result in extensive shedding of SU (79).
This analysis revealed that sequential deletion of the cytoplasmic tail and the membrane-spanning region of TM greatly increased the tendency of SU to shed from virions (Fig. 5). In particular, removal of the membrane-spanning domain in construct GLA15E resulted in excessive SU dissociation, as suggested by Fig. 3 and 4. However, a simple increase in the shedding tendency of a protein did not correlate with enhanced Env fusogenicity, which is in agreement with previous observations (70, 79). Instead, these data suggest that an optimal level of SU-TM association must be retained for maximum fusogenicity and Env function.
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FIG. 5. Truncation of TM enhances shedding of SU from virions. 35S-labeled viral supernatants were harvested from transiently transfected 293T cells. Aliquots were retained (total SU) or centrifuged through 20% sucrose to give pelleted and supernatant fractions. SU was immunoprecipitated from each fraction by using an anti-SU antibody, and the extent of radioactivity in each fraction was determined by SDS-PAGE and PhosphorImager analysis. Shedding indexes were calculated as the ratio of the amount of SU in the cleared supernatant to that in the total SU fraction; the data are shown as the averages plus or minus standard deviations of results of three independent experiments, with P values calculated for each mutant relative to CEE by using a t test. Mutant L493V contains a substitution in the heptad repeat region of TM and has previously been characterized as a shedding mutant (79).
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The gamma retroviruses, such as MuLV, additionally require removal of the C-terminal R peptide in the cytoplasmic tail of Env in order to achieve full fusogenicity (29, 53, 54). However, it is unclear how this event in the cytoplasmic domain regulates the fusogenic potential of the whole of the Env protein complex. It has previously been noted that the length of the cytoplasmic tail can affect the fusogenicity of retroviral Env proteins. Like MuLV, the cytoplasmic tails of the Env proteins from M-PMV and GaLV are processed by the viral protease to produce proteins that are more fusogenic than the full-length forms (3, 7). In addition, hyperfusogenic mutants resulting from tail truncations have been described for the SIV, HIV-1, and HIV-2 Envs (18, 45, 63, 68, 80). Interestingly, two studies of truncated variants of SIV and HIV-1 Env have provided evidence for corresponding alterations in the ectodomains of the proteins (14, 64).
The MuLV R peptide contains two features that may be important for its ability to regulate Env function, namely, a tyrosine-based endocytosis motif (Y622QHL) and an unmapped palmitoylation site (47). As the levels of a fusion protein on the surface of a cell can influence the efficiency of cell-cell fusion (8, 37), we first asked whether R peptide removal and the accompanying loss of an endocytosis motif enhanced fusogenicity simply by increasing the steady-state levels of cell surface Env. We observed that although the mutation Y622A did indeed increase the levels of Env, the mutant retained a fusion profile similar to that of the wild-type protein when compared at equivalent levels of CSE above a threshold level. Furthermore, after a plateau of syncytium formation had been reached, we were unable to increase fusion further simply by increasing the amount of Env. Our data therefore suggest that R peptide removal alters the intrinsic fusogenicity of the Env protein.
Using a series of truncation and point mutants of MoMuLV Env, we further demonstrated that the cytoplasmic tail and membrane-spanning region of TM can change the conformation of the protein's ectodomain. These differences were observed as altered patterns of recognition of the SU subunit by antibodies and differential labeling of the TM subunit by biotinylation reagents. The changes were most pronounced for protein CEETR, which is truncated at the natural R peptide cleavage site and which is also the most fusogenic protein (summarized in Table 4).
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TABLE 4. Summary of properties of Env mutants
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Interestingly, although the substitution L618A enhanced the fusogenicity of a full-length protein, we observed no significant alterations in the ectodomain properties of this mutant in two out of the three assays that we used to detect conformational changes (Table 4). Furthermore, although the difference between this mutant and the wild-type protein in the N/C antibody ratio assay was highly significant, the L618A value was also highly significantly different compared to the CEETR value. Overall, this suggests that this mutation may be increasing Env fusogenicity by a different mechanism than that used by the R peptide-truncated protein. An alternative hypothesis that we cannot rule out at this stage is that any conformational changes resulting from R peptide truncation are incidental to its ability to enhance fusion.
The question remains as to how R peptide removal could lead to alterations in the conformation of the Env ectodomain. It has previously been suggested that the R peptide could interact with a cellular factor (72), with such an interaction influencing the mobility of Env in the membrane, either before or after receptor binding. This idea is supported by the finding that the fusion-suppressing properties of the R peptide can be transferred to a truncated SIV Env protein (72). However, this phenomenon was observed only when the coreceptor used by the SIV Env was Gpr15 and not CCR5 (75), and the R peptide does not reduce fusogenicity when present in chimeric HIV-1 (75) or human T-cell leukemia virus type 1 Env proteins (9). Furthermore, although variations have been seen in the overall susceptibility of cells to MoMuLV-induced syncytium formation, removal of the R peptide always enhances fusion to some extent (29, 52, 53, 54, 66, 72, 74, 79; our unpublished observations), and we have been unable to identify a cell line that could be defective for such a cellular factor (our unpublished observations).
An alternative explanation is that R peptide removal first alters the conformation of the cytoplasmic domain of Env and that this change is then transmitted through to the ectodomain of the protein. Two possible mechanisms could allow such an action. First, the R peptide in the full-length tail could interact with and mask a functional domain present in the more upstream region of the tail. For example, an amphiphilic helix has been predicted to form in this region (72, 79), and R peptide removal could allow the hydrophobic face of such a structure to associate with either the cell membrane or other hydrophobic protein domains. Liberation of this interface could thereby promote interactions between adjacent Env tails, either within a single oligomer or between neighboring complexes. Evidence that the two halves of the tail may interact in a full-length Env is provided by the findings that mutations in both regions can independently increase the fusogenicity of a full-length protein (29, 36, 74; M. M. Januszeski and P. M. Cannon, unpublished data). A second, related mechanism has been proposed by Olsen and Andersen (47), who reported that the R peptide can be palmitoylated. They have suggested that this modification promotes an association of the full-length Env with the membrane, while R peptide removal frees Env from this constraint and allows it to adopt a different conformation as a consequence of these changes in the cytoplasmic tail.
It is noteworthy that the ability of the R peptide to suppress fusion within an Env oligomer is not trans dominant, while the fusion-enhancing properties of an Env monomer lacking the R peptide do function in trans (55, 78, 79). Furthermore, transmission of the R peptide cleavage signal within an Env oligomer can be blocked by mutations in the upstream region of the tail (79). We believe that these observations support a model whereby removal of the R peptide reveals a structure in the cytoplasmic tail whose adoption leads to changes in this domain that are then transmitted through to the ectodomain of the protein. Transmission of a conformational change in this way can be considered the opposite of the events that occur in cell signaling following ligand-receptor docking. A high affinity of the truncated tail for its interacting interface could explain why the R-peptide-truncated phenotype dominates in mixed populations and why complete R peptide cleavage is neither necessary for Env function nor is it observed in virions (26).
It is intriguing that the ability of the R peptide to suppress fusion by a truncated SIV Env is sensitive to coreceptor usage (75). Recently, it has been reported that the sensitivity of the HIV-1 Env to HR2-based peptide inhibitors that interfere with six-helix bundle formation is also influenced by the choice of coreceptor (11). It has been previously demonstrated that the equivalent HR1 and HR2 regions in the MoMuLV TM are essential for the activation of Env by R peptide cleavage (79). Taken together, these findings suggest that long-range interactions occur within the retroviral Env complex, involving the receptor- or coreceptor-binding domain in SU, the HR1-HR2 region in TM, and the cytoplasmic tail of the protein. We speculate that for the MuLV Env, the HR1-HR2 region plays a central role in both the priming of Env to the metastable state following R peptide cleavage and the conversion to a fusion-active state following receptor interaction.
This work was supported by NIH grant CA59318-08.
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