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Journal of Virology, July 2003, p. 7814-7819, Vol. 77, No. 14
0022-538X/03/$08.00+0 DOI: 10.1128/JVI.77.14.7814-7819.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Department of Virology and Immunology,1 Department of Comparative Medicine, Southwest National Primate Research Center, Southwest Foundation for Biomedical Research, San Antonio, Texas 78227,3 Department of Microbiology, University of Texas Health Science Center, San Antonio, Texas 782292
Received 30 January 2003/ Accepted 30 April 2003
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The WMHBV genome has the same genetic organization as human HBV. The core open reading frame (ORF) is the most conserved region of the genome, with approximately 15 and 24% divergence at the amino acid and nucleotide levels, respectively, in comparison to the human HBV core. The X region exhibits approximately 35% divergence between WMHBV and human HBV at the amino acid level, and the region of overlap between the pre-S1 and polymerase spacer regions also exhibits a high degree of divergence (30 to 32%). Nonetheless, recent studies have suggested that the WMHBV core and polymerase functions can substitute for the human HBV functions in genome replication (9) and that the WMHBV X region possesses transcriptional transactivating properties similar to those of the human HBV X protein (15).
In this report, we describe the construction of an infectious clone of WMHBV. The clone was derived by direct cloning from liver DNA of an infected woolly monkey without PCR amplification. Following transfection, the clone initiated replication in the human liver cell line Huh7 at levels similar to those of human HBV, and the virus secreted into the culture medium was infectious in spider monkeys. Attempts to improve the animal model by adaptation of the virus for better replication in spider monkeys, by either immunosuppression or inoculation of newborn animals, was not successful despite the induction of viremia of greater duration.
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Quantitative PCR. WMHBV DNA was isolated from serum by disruption of particles in TENS buffer (20 mM Tris-HCl [pH 7.4], 20 mM NaCl, 20 mM EDTA, 0.5% SDS) and digestion with proteinase K (1 mg/ml) for 2 h at 65°C. DNA was extracted with phenol-chloroform-isoamyl alcohol, and then chloroform and was ethanol precipitated. WMHBV DNA was then quantified by a real-time 5' exonuclease PCR (TaqMan) assay with a primer-probe combination that recognizes a portion of the WMHBV surface gene. The primers (forward [nucleotides 589 to 609], 5'-GGACGGAAACTGCACTTGT-3'; reverse [nucleotides 659 to 639], 5'-GCCCAGTCCCATAGGAACTTT-3') and probe (nucleotides 611 to 634; 5'-TTCCCATCCCCTCATCATGGGCTT-3') were selected with the Primer Express software (Applied Biosystems, Foster City, Calif.). The fluorogenic probe was labeled with 6-carboxyfluorescein and 6-carboxytetramethylrhodamine and was obtained from Synthegen (Houston, Tex.). The primers and probe were used at 10 pmol/50-µl reaction mixture. The reactions were performed with the TaqMan PCR Core Reagent Kit (Applied Biosystems) and included a denaturation step of 10 min at 95°C and then 40 cycles of amplification under the universal TaqMan PCR standardized conditions, 15 s at 95°C for denaturation, and 1 min at 60°C for annealing and extension. Standards to establish genome equivalents were derived from cloned WMHBV DNA.
Plasmids. The WMHBV greater-than-genome length (GGL) construct (WM GGL) was prepared from covalently closed circular DNA (cccDNA) isolated from liver tissue taken at autopsy from the woolly monkey that was the source of the original isolate of WMHBV. This animal died of fulminant liver failure. Approximately 200 mg of tissue was ground in 200 µl of TEN buffer (20 mM Tris-HCl [pH 7.4], 20 mM NaCl, 20 mM EDTA) and adjusted to contain 1% SDS and 1 M NaCl. Chromosomal DNA was allowed to precipitate overnight at 4°C, and a clarified supernatant containing the cccDNA was extracted three times with phenol-chloroform-isoamyl alcohol and then ethanol precipitated. The precipitate was suspended, digested with 40 µg of RNase A per ml for 45 min at 37°C, extracted with phenol-chloroform, and ethanol precipitated. The resulting DNA was digested with HindIII (the WMHBV genome contains a single HindIII site) and ligated into HindIII-digested pZero (Invitrogen). Thus, the clone was produced without the use of PCR amplification. The sequence of this clone was designated WMHBV-2 to distinguish it from the original WMHBV sequence. From the full-length WMHBV-2 clone, a GGL construct was produced (WM GGL) in a two-step cloning procedure that involved the cloning of an Eco52I (nucleotide position 1575)-to-HindIII (nucleotide position 123) fragment into NotI-HindIII-digested pBluescript SK+ (Invitrogen) and then addition of a HindIII-to-BsiWI (nucleotide position 1980) fragment into a HindIII-ApaI (T4 DNA polymerase blunted) intermediate vector. This yielded the WM GGL construct, spanning nucleotide positions 1575 to 1980. The human HBV GGL clone has been previously described (1, 3,18) and was derived from the ayw3 infectious clone. Both GGL clones were constructed in two different plasmid backgrounds, pBluescript SK+ and pZero. The nucleotide numbering convention used for both WMHBV and HBV corresponds to the HBV sequence numbering used by Galibert et al. (3). Subgenomic constructs were prepared to express the small, middle, and large envelope proteins in both pBluescript and pZero. For the WMHBV subgenomic construct cloned into pBluescript (WM-SG pBS), an SspI (blunted with Klenow)-to-KpnI (pBluescript site) fragment spanning nucleotide positions 2669 to 1980 was inserted into pBluescript cleaved at EcoRV and KpnI. This fragment was then moved to pZero as an EcoRV-to-KpnI fragment to produce WM-SG pZ. For Hu-SG pZ and Hu-SG pBS, a BglII-to-BglII fragment spanning nucleotide positions 2425 to 1987 was inserted into a BamHI-digested vector.
Cells and transfections. The human hepatoma cell line Huh7 was maintained in Dulbecco modified Eagle medium (DMEM)-F12 medium (1:1) containing 10% fetal bovine serum, 2 mM glutamine, and 50 µg of gentamicin per ml. Huh7 cells were approximately 80% confluent prior to transfection. TransIT-LT1 (Mirus; PanVera, Madison, Wis.) was added to 3 ml of serum-free DMEM-F12, and the mixture was incubated for 15 min at 23°C. DNA was added to the lipid-medium mixture at a ratio of 1 µg of DNA per 2 µg of lipid, and the mixture was incubated for 15 min at 23°C. Cultures were washed twice with serum-free medium and exposed to the lipid-DNA mixture for 6 h at 37°C. Following transfection, the lipid-DNA mixture was replaced with DMEM-F12 supplemented with 10% fetal bovine serum, 2 mM glutamine, and 50 µg of gentamicin per ml.
Immunoprecipitation. Cells were harvested at various time points posttransfection by being washed twice with PBS and extracted with EB buffer (50 mM Tris-HCl [pH 9.0], 100 mM NaCl, 1% Igepal [Sigma]) containing protease inhibitors (100 µM leupeptin, 1 mM Pefabloc, 10 µM aprotinin, 10 µg of pepstatin per ml, and 1 mM EDTA). The medium was supplemented with 1% Igepal to remove the envelope prior to immunoprecipitation. Core particles were immunoprecipitated for 16 h at 4°C with rabbit anti-core antibody bound to protein A agarose beads. Following immunoprecipitation, the beads were washed twice with EB buffer and treated with 1.5 U of micrococcal nuclease (USB, Cleveland, Ohio) for 30 min at 37°C.
DNA extraction and Southern hybridization. Core particles were eluted from the beads and disrupted by incubation with TENS buffer for 10 min at 23°C. The extract was clarified to remove the beads, and viral DNA was purified by digestion with proteinase K, extraction with phenol-chloroform, and precipitation with ethanol. DNA was analyzed by electrophoresis on 1% agarose gels in TAE buffer (0.04 M Tris-acetate, 2 mM EDTA) for 5 h at 100 V, followed by downward capillary transfer to GeneScreen Plus membranes (Perkin-Elmer) in 0.1 N NaOH for 1 h at 23°C. Membranes were hybridized with a probe consisting of an equal mixture of the 32P-labeled, full-length human HBV and WMHBV DNAs. Hybridization was performed with 50% formamide-7% SDS-0.25 M NaPO4 (pH 7.2)-0.25 M NaCl-1 mM EDTA for 16 h at 37°C, followed by three washes in 2x SSC (1x SSC is 0.15 M NaCl plus 0.015 M sodium citrate) containing 0.1% SDS and three washes in 0.2x SSC-0.1% SDS at 42°C. Membranes were dried and exposed to film.
RNA extraction and Northern hybridization. Cultures were harvested at various times posttransfection in RNAzol B (Leedo, Houston, Tex.), and RNA was extracted and purified in accordance with the manufacturer's protocol. RNA was heated for 10 min at 70°C in RNA sample buffer containing 50% formamide and 2.2 M formaldehyde and resolved by electrophoresis in a 1% agarose gel containing 2.2 M formaldehyde for 16 h at 40 V. The gel was washed four times with water and once with 10x SSC, and RNA was transferred to a GeneScreen Plus membrane for 16 h in 20x SSC. RNA was UV cross-linked to the membrane, prehybridized for 5 h at 37°C in hybridization buffer (6x SSPE [1x SSPE is 0.18 M NaCl, 10 mM NaH2PO4, and 1 mM EDTA at pH 7.7], 10% SDS, 200 µg of salmon sperm DNA per ml, 50% formamide), and hybridized in the same buffer for 16 h at 42°C with a probe consisting of an equal mixture of the 32P-labeled, full-length human HBV and WMHBV DNAs. Membranes were dried and exposed to film.
Endogenous polymerase assay.
For analysis by the endogenous polymerase assay, core particles were immunoprecipitated as described above. The beads were washed twice with endogenous polymerase (EP) buffer (50 mM Tris-HCl [pH 7.4], 75 mM NH4Cl, 1.0 mM EDTA, 20 mM MgCl2, 0.1 mM ß-mercaptoethanol, 0.5% Tween 20), and the endogenous polymerase assay (6) was performed with the core particles still bound to the beads. The beads were suspended in 50 µl of EP buffer containing 100 µM unlabeled deoxynucleoside triphosphates (dATP, dGTP, and dCTP) and 5 µCi of [
-32P]TTP (3,000 Ci/mmol; NEN) and incubated at 37°C for 6 h. The beads were washed twice with EB buffer, and viral DNA was purified by proteinase K digestion and phenol extraction as described above. DNA was electrophoresed on a 1% agarose gel in 1x TAE buffer at 100 V for 4 h. The gels were fixed in 7.5% trichloroacetic acid, dried, and exposed to film.
Nucleotide sequence accession numbers. The WMHBV-1 and WMHBV-2 nucleotide sequences have been submitted to the GenBank database and assigned accession no. AF046996 and AY226578, respectively.
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Analysis of transcription of WMHBV-2 in Huh7 cells. Since no woolly monkey or spider monkey liver cell lines were available, the replication potential of WMHBV-2 was analyzed with the human liver cell line Huh7 and directly compared to that of an HBV infectious clone of the ayw serotype (18). Initially, the transcriptional patterns of the two viruses were compared. Huh7 cells were transfected with WMHBV-2 GGL (WM GGL) or HBV ayw GGL (Hu GGL), and cultures were harvested at various times over a 9-day period. A typical transcript pattern was observed by Northern hybridization for both viruses, including the 3.5-kb pregenomic RNA and the 2.1- to 2.4-kb transcripts for the small, middle, and large envelope proteins (Fig. 1). The WMHBV genome appeared to produce transcript levels similar to those of HBV in Huh7 cells. The maximum level of viral RNA was observed at day 3 for both viruses, and the levels gradually declined thereafter but were still detectable at day 9. The 2.1- to 2.4-kb transcripts contain two distinctive mRNA species, one for the large envelope protein and one for the middle and small envelope proteins, which are poorly resolved on most gels. However, the level of the 2.4-kb transcript appeared to be reduced in the WM GGL-transfected cells. Analysis of a separate transfection at day 6 clearly indicated that the 2.4-kb transcript was reduced or absent in the WM GGL-transfected cells (Fig. 1, far right lanes).
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FIG. 1. Transcription profile of WMHBV-2 in Huh7 cells. The human liver cell line Huh7 was transfected with GGL constructs for both WMHBV-2 (WM) and HBV (Hu). Total cellular RNA was harvested from cultures at day 0 (d0), d3, d6, and d9 posttransfection. Viral RNA was analyzed by denaturing agarose gel electrophoresis and Northern hybridization with a mixed probe containing both WMHBV and HBV sequences. The migration of the subgenomic 2.1- to 2.4-kb and pregenomic 3.5-kb transcripts is indicated. A second preparation harvested on d6 was examined to confirm the reduced detection of the 2.4-kb transcript in the WMHBV-transfected cells.
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FIG. 2. Transcription profile of WMHBV subgenomic constructs. Constructs of WMHBV-2 (WM) and HBV (Hu) were prepared with two vectors, pBluescript (pBS) and pZero (pZ), to compare transcription profiles from GGL and subgenomic (SG) vectors that only express the envelope transcripts. Huh7 cells were transfected with each vector and harvested on day 3. Total cell RNA was analyzed by denaturing agarose gel electrophoresis and Northern hybridization with a mixed probe containing both WMHBV and HBV sequences. The migration of the subgenomic 2.1- to 2.4-kb and pregenomic 3.5-kb transcripts is indicated.
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FIG. 3. Replication of WMHBV in Huh7 cells. Huh7 cells were transfected with the WMHBV-2 (WM) and HBV (Hu) GGL constructs, and medium was harvested 6 days posttransfection. Core particles were immunoprecipitated from detergent-treated medium with anti-core antibodies. Viral DNA was purified from the core particles and analyzed by Southern blot hybridization with a mixed probe containing both HBV and WMHBV sequences. The migration of single-stranded (SS) and RC DNAs is indicated. The values on the left are the molecular sizes, in kilobases, of the markers in lane M.
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FIG. 4. Endogenous polymerase reaction of WMHBV particles. Huh7 cells were transfected with the WMHBV-2 (WM) and HBV (Hu) GGL constructs, and medium was harvested on day 3 (d3) and d6, and cells were harvested on d6. Core particles were immunoprecipitated from the cell lysates and detergent-treated medium with anti-core antibodies, and endogenous polymerase reactions were conducted with the core particles still bound to the immunobeads. Viral DNA was purified from the core particles and analyzed by gel electrophoresis and autoradiography.
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FIG. 5. Infection of a spider monkey with WMHBV-2-derived particles. WMHBV particles were produced by transfection of Huh7 cells with WMHBV-2 GGL, and particles secreted into the medium were concentrated by ultrafiltration and ultracentrifugation. A spider monkey (14495) was inoculated intravenously with 1012 particles and monitored by TaqMan PCR for the level of viremia (bar graph) and by ELISA for the levels of HBsAg (plus and minus signs at the top of the graph) and anti-HBcAg (line graph). OD, optical density.
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FIG. 6. Classification of primates. The classification scheme for primates is illustrated. The primates are divided into New World primates, Old World primates, and hominoids, which include the lesser and greater apes. The common names of many of the primate genera are shown. Note the close relationship between spider and woolly monkeys. Hepadnaviruses have been isolated from woolly monkeys, gibbons, orangutans, and chimpanzees.
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FIG. 7. Infection of an immunosuppressed spider monkey with WMHBV. A spider monkey (14494) was immunosuppressed with FK506 (200 µg/kg/day) for 3 weeks prior to and 22 weeks after inoculation with WMHBV and monitored by TaqMan PCR for the level of viremia (bar graph) and by ELISA for the levels of HBsAg (plus and minus signs at the top of the graph) and anti-HBcAg (line graph). OD, optical density.
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The factors limiting the level of WMHBV viremia in spider monkeys are not apparent. Presumably, proper interaction with an essential cellular protein is lacking or reduced in spider monkeys. One possible explanation for the lack of adaptation to a more "fit" virus is that an overlapping essential function prevents the emergence of a virus with higher replication competence. The overlapping nature of the polymerase ORF with other ORFs and cis functions certainly constrains the evolution of hepadnaviruses. Surprisingly, the WMHBV infectious clone replicates in the human cell line Huh7 at levels similar to those of HBV. Although receptor interactions cannot be examined in Huh7 cells, it is unlikely that receptor interactions account for the reduced viremia. The lack of interaction between the receptor and WMHBV in spider monkeys would presumably completely block infection, while a reduced affinity between the virus and the receptor would presumably still result in spread of the infection to all susceptible hepatocytes. Another possible factor that limits viremia is greater suppression of WMHBV replication by the innate immune system of spider monkeys. Further evaluation of this virus-host interaction may provide additional information about the factors that regulate hepadnavirus infections.
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