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Journal of Virology, May 2002, p. 4412-4419, Vol. 76, No. 9
0022-538X/02/$04.00+0 DOI: 10.1128/JVI.76.9.4412-4419.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
John E. Johnson,2 and Marianne Manchester1*
Department of Cell Biology, Center for Integrative Molecular Biosciences,1 Department of Molecular Biology, The Scripps Research Institute, La Jolla, California 920372
Received 4 October 2001/ Accepted 22 January 2002
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The CPMV chimera technology for presenting heterologous peptides is based on the crystal structure of the virus capsid (3, 9). The CPMV capsid consists of 60 copies each of a large (L) and small (S) protein that are arranged with icosahedral symmetry. One L protein consisting of two jelly roll ß-barrels and one S protein consisting of a single jelly roll ß-barrel make up the asymmetric unit of the capsid. There are three copies of the L protein arranged around each threefold axis of symmetry, and five copies of the S protein are arranged around each fivefold axis of symmetry. In the S protein, surface-exposed loops that do not appear to be involved in intersubunit contact exhibit high variability among different members of the comovirus family of plant viruses, of which CPMV is a member. In particular, the ßB-ßC loop is highly exposed on the surface of CPMV and has been shown to be amenable to the insertion of heterologous sequences (19). The insertion of a foreign peptide into a loop on the S protein has the added advantage of presenting five copies of the peptide at each fivefold axis of symmetry, allowing a high effective concentration of the peptide to be achieved.
As a proof of concept for the development of a CPMV-based antiviral, we turned to the problem of measles virus (MV) infection. MV continues to cause widespread morbidity and mortality, with ca. 40 million cases occurring annually, mostly in the developing world. MV infects a wide variety of cell types, including those of the immune system and central nervous system. Such infection leads to immunosuppression and attendant opportunistic infections such as pneumonia and diarrhea, as well as rare but serious neurologic complications. The measles vaccine is a live-attenuated vaccine that is susceptible to heat inactivation and is administered to infants at 12 to 18 months and 5 years of age. Maternal antibody inhibits the success of the vaccine in children younger than 18 months, creating a window of time when children are susceptible to infection. This window of susceptibility, combined with the heat sensitivity of the current vaccine, creates the need for inexpensive supplementary agents such as antiviral agents that could be administered both in conjunction with the vaccine and in the period before the vaccine becomes effective in young infants.
To determine whether a CPMV-based antiviral could be developed that inhibits MV infection, we utilized previous studies that extensively characterized the interaction of MV with cell surface receptors. One cellular receptor for MV has been identified as CD46 or membrane cofactor protein (13, 17). CD46 is a member of the family of regulators of complement activation and functions to inactivate complement components C3b and C4b and prevent the formation of the membrane attack complex. MV binds to CD46 within two 60-amino-acid extracellular domains or short consensus repeats (SCRs) known as SCR1 and SCR2. Within these SCRs, specific CD46-derived peptides that interact with MV have been identified. We have previously shown that two peptides, peptide 12 in SCR1 and peptide 24 in SCR2, inhibited MV infection of HeLa cells in vitro by 50 and 80%, respectively (12). In MV entry and infection of cells, the MV hemagglutinin (H) glycoprotein has been postulated to bind to receptors such as CD46 as a trimer (2, 7). Thus, in presenting CD46 peptides on the CPMV capsid, the clustering of CD46 peptides at each fivefold axis might lead to an increased binding affinity for the H protein, allowing the CPMV-CD46 chimera to be a more effective antiviral than the soluble CD46 peptides. In order to test this hypothesis, we constructed CPMV-CD46 chimeras by inserting sequences encoding inhibitory CD46 peptides into the CPMV genomic cDNA. Viable chimeras were generated and tested for antiviral activity both in vitro and in a transgenic mouse model for MV infection in vivo.
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Production and purification of CPMV-CD46 chimeric virus particles.
Directly infectious double-stranded cDNA clones of the CPMV genome (RNA-1 and RNA-2) were utilized in the production of chimeric virus. These constructs consist of the cauliflower mosaic virus 35S promoter sequence linked to the 5' ends of the viral cDNAs to generate infectious transcripts in the plant (6). The pCP2 plasmid containing the oligonucleotide encoding the CD46 peptide insert was linearized by digestion with EcoRI while wild-type (WT) pCP1 plasmid was linearized by digestion with MluI . Kentucky cowpea plants (Vigna unguiculata) were inoculated as 10-day-old seedlings, bearing two primary leaves and with secondary leaves just beginning to show. Carborundum was first dusted onto the leaves to aid in the wounding process and then 10 µg of the linearized recombinant pCP2 in 100 µl of MilliQ water and 10 µg of the linearized WT pCP1 in 100 µl of MilliQ water were combined and inoculated into each plant by rubbing the plasmids directly onto the leaves. At ca. 3 weeks postinoculation, when a systemic CPMV infection was observed as characterized by lighter-colored punctate lesions on the primary and secondary leaves, the infected leaves were harvested, weighed, and frozen at -20°C or on dry ice for 30 min. The leaves were homogenized in a Waring blender, and chimeric virus was purified from the infected leaves by a method described elsewhere (1). The purified virus or an extract from infected plants was used as an inoculum for passaging through fresh 10-day-old cowpea seedlings, with each plant receiving an
0.2 optical density (at 260 nm) concentration of purified CPMV-CD46 or CPMV-HRV-II in 0.1 M phosphate buffer (pH 7.0). The yield of purified virus obtained from infected leaves was 0.33 g/kg (wet weight) of leaves.
Characterization of chimeric virus particles. The CPMV-CD46 chimeric virus was analyzed by reducing sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), matrix-assisted laser desorption ionization (MALDI) mass spectrometry, and DNA sequencing. For the SDS-PAGE, 15 µg of the CPMV-CD46 chimera was loaded onto a 16% reducing Tris-glycine polyacrylamide gel and electrophoresed at 125 V for 2 h. Then, 15 µg of WT CPMV was electrophoresed in parallel for comparison, and protein bands were visualized by silver stain. Nucleic acid sequencing was also performed on cDNA generated from RNA isolated from the CPMV-CD46 chimera to confirm that the sequences encoding the CD46 peptides had been successfully incorporated into the viral genomic RNA. Total RNA was extracted from CPMV-CD46 virus particles by homogenizing 0.1 mg of chimeric virus in 100 µl of RNA extraction buffer (0.1 M glycine, 10 mM EDTA, 0.1 M NaCl, 20% SDS, 50 mg of bentonite/ml). RNA was extracted with 100 µl of a 1:1 mixture of phenol and chloroform, followed by precipitation with 95% ice-cold ethanol. RNA (0.5 µg) was converted to cDNA by reverse transcription with MMLV-Reverse Transcriptase (Promega, Madison, Wis.) at 37°C for 1.5 h, followed by treatment at 70°C for 5 min, with oligo(dT) as a primer. The cDNA was then amplified by PCR with 12.5 µl of cDNA, 0.5 µl of Taq polymerase (Roche, Mannheim, Germany), and 50 pmol each of the primers 5'TCCCGCTTGCTTGGAGC3' and 3'ACCTTTAGACCTTGATA5'. Forty cycles of denaturing at 95°C, annealing at 45°C, and amplification at 72°C were carried out in a Perkin-Elmer 2400 thermocycler, and the PCR products were sequenced by using a Thermo Sequenase Terminator Cycle Sequencing Kit (USB, Cleveland, Ohio). Finally, MALDI mass spectrometry was conducted on CPMV-CD46 (dialyzed against MilliQ water) by using a Perceptive Biosystems Voyager Elite apparatus in 0.5 µl of 3,5-dimethoxy-4-hydroxycinnamic acid (Aldrich) in a saturated solution of acetonitrile-water (50:50)-0.25% trifluoroacetic acid.
In vitro virus inhibition assays with CPMV-CD46 chimera. HeLa cells were plated on glass coverslips in 24-well plates at a concentration of 5 x 104 HeLa cells/well. Purified MV (multiplicity of infection [MOI] of 2) was incubated for 30 min on ice with WT CPMV or CPMV-CD46, at 5 mg/ml (5.4 µM peptide) and 0.5 mg/ml (0.54 µM peptide), or with CD46 peptides 12 (IPPLATHTICDRNHTWLPVS) or 12.2B (ATHTIADRNHT) diluted to 100 µM in ice-cold phosphate-buffered saline (PBS). Medium (100 µl) was then added, and the MV-peptide mixtures were divided between duplicate wells of HeLa cells and incubated for 1 h at 37°C. The cells were washed three times in PBS, fresh medium was added, and the cells were incubated for 20 h at 37°C to allow for the expression of MV proteins in infected cells. After this incubation, the cells were fixed and stained for MV proteins with a human subacute sclerosing panencephalitis (SSPE) antiserum and visualized with a fluorescein isothiocyanate-labeled goat anti-human secondary antibody. Fluorescent cells were viewed at x200 magnification under an Olympus BH-2 fluorescent microscope. The percentage of fluorescent cells for each treatment was calculated by quantitating a minimum of three independent fields per sample, and each sample was assayed in duplicate. Values are reported as the mean ± the standard error. The 50% effective concentrations (EC50s) for CPMV-CD46 and peptide 12.2B were calculated by using Graph Pad Prism (Graph Pad Software, Inc., San Diego, Calif.).
Inoculation of NSE-CD46 transgenic mice with chimeric virus particles.
The transgenic mouse model (NSE-CD46) for human MV infection has been previously described (20). Eight 1-day-old NSE-CD46 transgenic mice were injected intracranially (i.c.) with 30 µl of a 1:1 mixture of CPMV-CD46 (diluted to 21 mg/ml in sterile PBS) and MV (4.4 x 105 PFU/ml) of the Edmonston strain (MV-Ed)/animal that had been passaged twice through Vero (African green monkey kidney) cells. Five control NSE-CD46 transgenic mice were injected with a 1:1 mixture of a control CPMV chimera, CPMV-HRV-II (21 mg/ml), and 4.4 x 105 PFU of MV-Ed/ml, prepared as described above. The CPMV-HRV-II chimera has the NIm-1A epitope of human rhinovirus 14 (HRV14), with the sequence KDATGIDNHREAKL inserted into the ßB-ßC loop of the CPMV capsid S protein (22, 23). Mice were monitored daily for morbidity and mortality over a period of 2 months. Disease symptoms included roughness of coat and ataxia, leading to paralysis, severe weight loss, and wasting in the end stages. Occasionally, animals that were immobile or moribund were euthanized according to Institutional Animal Care and Use Committee (IACUC) guidelines. The brains of mice that died from both groups were removed for Northern analysis to confirm that death occurred from viral replication in the brain. Briefly, RNA was isolated by homogenizing brains in TRI reagent (MRC, Cincinnati, Ohio), followed by chloroform extraction and isopropanol precipitation according to the manufacturer's instructions. The 10 µg of RNA from each brain was electrophoresed at 125 V for 1 h on a 1.5% NuSieve GTG agarose (BioWhittaker, Rockland, Maine) gel containing 1.81 M morpholinepropanesulfonic acid (MOPS) and 5% formaldehyde in 1.81 M MOPS running buffer. The gel was then incubated in a solution of 0.5 M NaOH and 1.5 M NaCl for 30 min to denature the RNA followed by neutralization in a solution of 0.5 M Tris-HCl and 1.5 M NaCl (pH 7.0) for 30 min. The separated denatured RNA bands were transferred to a Nytran (Schleicher & Schuell, Keene, N.H.) membrane in 20x SSC (1x SSC is 0.15 M NaCl plus 0.015 M sodium citrate) by using a Turboblotter device (Schleicher & Schuell). RNA was UV cross-linked to the nitrocel-lulose and probed for 3 h at 55°C with 4.106 cpm of an oligonucleotide representing a partial sequence of the MV nucleoprotein (MV-N) gene end labeled with 32P. The radiolabeled probe was prepared by incubating a 10 µM concentration of the MV-N oligonucleotide with 0.2 mCi of [
-32P]ATP (ICN, Costa Mesa, Calif.) and 20 U of T4 kinase at 37°C for 45 min and then at 68°C for 10 min to inactivate the kinase. Membranes were exposed to Kodak Biomax film overnight at -80°C. Two previous experiments were conducted to test the in vivo efficacy of CPMV-CD46 as an antiviral reagent. Combining the two additional experiments, 11 mice were injected i.c. with a 1:1 mixture of CPMV-CD46 and MV and 5 mice were injected i.c. with a 1:1 mixture of CPMV-HRV-II and MV.
The CPMV-CD46 chimera (30 µl of a 10.5-mg/ml solution/animal) was also injected i.c. into 3 1-day-old NSE-CD46 mice, followed a day later by an i.c. injection of 30 µl of MV-Ed (4.4 x 105 PFU/ml)/animal prepared as described above. Four 1-day-old NSE-CD46 control mice were injected with 30 µl of PBS/animal, followed a day later by an i.c. injection of 30 µl of MV-Ed (4.4 x 105 PFU/ml)/animal. The brains of mice that died were removed for Northern analysis as described above to confirm that death occurred from viral replication in the brain. At ca. 40 days postinfection the surviving mice were euthanized and their brains were removed for Northern analysis to ascertain the amount of brain viral replication.
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FIG. 1. Schematic showing the site of insertion of the CD46 peptide in the ßB-ßC loop of the CPMV S protein. The loop is well exposed on the virus surface, resulting in the presentation of 60 copies of the CD46 peptide (shown as red dots on figure on the right) per virion.
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40 kDa). SDS-PAGE of WT CPMV (Fig. 2, lane 1) revealed two species of S protein typically seen in WT CPMV with molecular masses of 23 and 21 kDa corresponding to previously characterized slow- and fast-form CPMV particles (21). The slow-form particles are full-length S protein, while the fast-form particles result from cleavage of the WT CPMV S protein at its C terminus. In addition, it has previously been shown that for many CPMV chimeras, the recombinant S protein containing the peptide insert is cleaved between the last two carboxy-terminal residues of the insert by an unidentified plant protease (24). SDS-PAGE of the CPMV-CD46 chimera (Fig. 2, lane 2) revealed three S protein bands. The largest chimeric S protein band migrated slower (higher) than the WT S protein bands and represents the uncleaved S protein containing the peptide insert. The two smaller S protein bands (S' and S'') have molecular masses of 20 and 6 kDa, respectively, corresponding to cleavage products from the proteolytic cleavage of the chimeric S protein at the carboxy-terminal end of the CD46 peptide insert (24). These results are consistent with SDS-PAGE profiles observed with other CPMV chimeras containing peptides from HRV14 and human immunodeficiency virus type 1 (HIV-1) (10, 14, 18). Second, MALDI mass spectrometry of CPMV-CD46 revealed species confirming that the additional ATHTIADRNHT sequence was present in the CPMV-CD46 chimera (data not shown). Finally, sequence analysis of RNA isolated from the CPMV-CD46 chimera showed that the sequence encoding the ATHTIADRNHT insert was retained even following three successive passages in plants (data not shown).
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FIG. 2. Reducing SDS-PAGE of WT CPMV and the CPMV-CD46 chimera. A total of 15 µg of WT CPMV and 15 µg of CPMV-CD46 chimera were electrophoresed on a 16% Tris-glycine polyacrylamide gel and then visualized by silver stain. The S protein bands in the WT CPMV lane correspond to slow-form (23-kDa) and fast-form (21-kDa) WT S proteins. The slower-migrating S protein band in the CPMV-CD46 lane corresponds to the uncleaved chimeric S protein, while the two faster-migrating bands correspond to the cleavage products obtained upon cleavage of the chimeric S protein at the C-terminal end of the CD46 insert in the ßB-ßC loop.
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FIG. 3. The CPMV-CD46 chimera inhibits MV infection of HeLa cells bearing the CD46 receptor. HeLa cells were inoculated with MV at an MOI of 2 in the presence of 5 mg of WT CPMV/ml (A), 5 mg of CPMV-CD46/ml (B), or no CPMV (C). Cells were stained 24 h postinfection for MV proteins by indirect immunofluorescence with a human polyclonal antiserum as the primary antibody and fluorescein isothiocyanate-labeled goat anti-human immunoglobulin as the secondary antibody. (D) Quantification of the inhibitory effect of CPMV-CD46 on MV infection of HeLa cells. Purified MV (MOI = 2) was incubated for 30 min with CPMV, with CPMV-CD46 (CPMV chimera containing the sequence ATHTIADRNHT), or with 100 µM peptide 12 (IPPLATHTICDRNHTWLPVS) or 100 µM peptide 12.2B (ATHTIADRNHT) and then added to duplicate wells containing 5 x 104 HeLa cells/well and incubated for 1 h at 37°C. Molar concentrations of the ATHTIADRNHT peptide in the context of the CPMV-CD46 chimera are noted in parentheses.
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FIG. 4. Efficacy of the CPMV-CD46 chimera as an inhibitor of MV infection in vivo. (A) Percent survival of NSE-CD46 transgenic mice injected i.c. as neonates with a 1:1 mixture of CPMV-CD46 (21 mg/ml) and MV at an MOI of 2 (solid diamond; n = 8) or CPMV-HRV-II (21 mg/ml) and MV at an MOI of 2 (shaded square; n = 5). Mice were monitored for mortality from measles over a period of 2 months. (B) Northern blot of RNA isolated from brains of NSE-CD46 transgenic mice that died from a typical MV-induced disease during the experiment. Lanes 1 to 3 contain RNA extracted from brains of mice that died in the 2 weeks after inoculation with CPMV-HRV-II and MV. Lane 4 contains RNA extracted from a mouse that died in the 2 weeks after inoculation with CPMV-CD46 and MV. The RNA samples were probed with a 32P-labeled oligonucleotide representing a partial sequence of the MV-N (nucleoprotein) gene. (C) Percent survival of NSE-CD46 transgenic mice injected i.c. with CPMV-CD46 (10.5 mg/ml) at an MOI of 2 (solid square; n = 3) or PBS (shaded circle; n = 4) 1 day prior to i.c. injection with MV at an MOI of 2. (D) Northern blot of RNA isolated from brains of mice from the experiment depicted in panel C. Lanes 1 to 4 contain RNA extracted from brains of mice that received PBS a day prior to infection with MV and subsequently died during the course of the experiment. Lanes 5 to 7 contain RNA extracted from brains of mice that received CPMV-CD46 a day prior to infection with MV; these mice survived up to the end of the experiment (day 40 postinfection).
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100-fold enhancement in antiviral activity compared to that of monomeric soluble CD46 (4). For measles in particular, a CPMV-based antiviral could be an effective companion to the measles vaccine. The current measles vaccine utilizes live attenuated MV derived from the Edmonston laboratory strain, but this vaccine is inhibited by maternal antibody. An inexpensive measles antiviral agent could act as a supplement to the measles vaccine, protecting children against MV infection during the window of time before the vaccine becomes effective. It would be very interesting to determine whether a CPMV-based antiviral agent could be effective after MV infection has been initiated. In the NSE-CD46 transgenic model and in previously published models (4), it has not been possible to do mortality-challenge studies in animals after MV inoculation because once CD46-dependent entry into neurons of the central nervous system has been achieved, subsequent cell-to-cell spread likely occurs transsynaptically and does not require CD46 (8). Thus, to determine whether a CPMV-based antiviral agent will be effective in inhibiting an established infection, other virus-receptor interactions are being explored.
One potential application of the CPMV system to the development of antiviral agents is to display multiple peptides or peptides with structural conformation on the capsid surface. Structural studies on the capsid S protein of CPMV have revealed multiple sites at which heterologous peptides can be inserted. In addition to the ßB-ßC loop, other sites that have been identified on the S protein include the ßC'-ßC'' site and sites at or near the C terminus of the S protein. Studies are currently under way to express the CD46 peptide 12.2B at the ßB-ßC site and an MV-neutralizing antibody epitope and/or cytotoxic-T-cell epitope at other sites on the CPMV capsid S protein. CPMV has been previously used to generate vaccines against several viral epitopes with encouraging success. Chimeric CPMV particles expressing epitopes from HIV-1, human rhinovirus, canine parvovirus, foot-and-mouth disease virus, mink enteritis virus, and the bacterium Staphylococcus aureus have been created that evoke strong protective antibody responses in experimental animals (5, 14-16, 18, 25). A CPMV chimera that combined potent inhibition of MV infection and the induction of virus-specific antibodies and cellular immune responses could potentially act as both a vaccine and an antiviral agent simultaneously. The CPMV technology also presents the possibility of manipulating the three-dimensional structural presentation of an epitope. This is important in order to evoke optimal epitope-specific immune responses or for presentation of a peptide whose activity is dependent on its three-dimensional conformation. Recently, CPMV chimeras have been created that express the NIm-1A epitope of human rhinovirus, CPMV-HRV14, in the uncleaved form by moving the NIm1A epitope one residue toward the N terminus (23). Since the native NIm1A epitope forms a constrained loop, the uncleaved CPMV-HRV14 chimera induced antibodies of a higher titer and affinity for HRV14 than the cleaved chimera. This strategy could potentially be applied to the creation of antiviral reagents that display peptides whose antiviral activity depends on a constrained three-dimensional structure. The success of the CPMV-CD46 chimera in inhibiting MV infection in vivo and in vitro paves the way for the creation of antivirals and antiviral agent-vaccine combinations against other important viruses such as HIV-1 whose cellular receptors have been structurally and biochemically characterized.
This work was supported by a grant from the National Institutes of Health (M.M. and J.E.J.).
This is manuscript 14460-NP from The Scripps Research Institute. ![]()
Present address: Department of Mammalian Virology, Institute of Animal Science and Health (ID-DLO), 8200AB Lelystad, The Netherlands. ![]()
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