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Journal of Virology, April 2002, p. 4087-4095, Vol. 76, No. 8
0022-538X/02/$04.00+0 DOI: 10.1128/JVI.76.8.4087-4095.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas 77030,1 Centro de Microbiología y Biología Celular, Instituto Venezolano de Investigaciones Científicas, Caracas 1020-A, Venezuela,2 Clinical Microbiology and Public Health Laboratory, Addenbrooke's Hospital, Cambridge CB2 2QW, United Kingdom3
Received 24 August 2001/ Accepted 10 December 2001
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The spike protein VP4 (encoded by gene 4) is the virus attachment protein (7, 24), and rotavirus infectivity is enhanced by proteolytic cleavage of VP4 into VP8* and VP5* (10, 11). Additional biologic functions associated with the spike protein VP4 include the ability to agglutinate erythrocytes (hemagglutination [HA]) and bind to N-acetylneuraminic (sialic) acid (SA) residues, functions mapped to a domain within amino acids (aa) 93 to 208 of the VP4 cleavage product VP8* (9, 13, 19, 21). VP4 is also associated with restricted growth in cell culture (17), protease sensitivity associated with plaque formation (3), and virulence (2, 33, 38).
The initial stages of rotavirus binding to cells are complex, and although the identity of the rotavirus cellular receptor(s) remains controversial (for a review, see reference 5), it was thought that animal rotaviruses required the presence of SA residues on the cell surface for efficient binding and infectivity but that human rotaviruses did not require SA residues for such functions (14, 18, 23-28, 35, 36; J. A. López, J. E. Ludert, F. H. Pujol, and F. Liprandi, submitted for publication). This hypothesis was disproved following the testing of a large number of human and animal rotavirus strains, when it was shown that only a minority of animal rotaviruses require the presence of SA residues on the cell surface for efficient infectivity; thus, most animal and all human rotaviruses are SA independent (4). SA-independent variants of animal rotavirus strains isolated from SA-dependent strains bind to and infect cells efficiently, confirming that binding to SA is not an essential step for rotavirus infection (4, 26-28). The binding of SA-dependent rotavirus strains to cells is mediated initially by VP8* through SA residues and then by VP5*, while the binding of SA-independent rotavirus strains is proposed to be mediated directly by VP5* (39).
Human and animal rotavirus strains representative of all P genotypes, with the exception of P genotypes [13], [15], [18], and [19], have previously been tested for their SA dependency during the initial steps of infection. In view of the fact that only animal rotavirus strains belonging to P genotypes [1], [2], [3], and [7] have been shown to be SA dependent (4, 8, 14, 20, 23-28, 35, 36), we tested a total of 41 additional animal and human rotavirus strains of different VP4-VP7 combinations, comprising all known P genotypes, including those never tested before, to determine if there is a correlation between SA dependency and rotavirus VP4 P genotype. Since binding to SA residues may be determined by different or altered VP4-VP7 interactions (27), we tested five reassortant strains, including the bovine (strain UK)-human reassortant candidate vaccine strains (29, 30), and retested the simian (strain RRV)-human rotavirus reassortant candidate vaccine strains (25, 27, 29, 30) to determine if these reassortants exhibit altered SA dependency. Our data show that the requirement of the presence of SA residues on the cell surface for efficient infectivity of rotavirus strains correlates with the VP4 genotype, not with the species of origin.
The species of origin, G serotypes, P genotypes and serotypes (where available), and sources of rotavirus strains used in this study are summarized in Table 1. All virus strains were propagated in embryonic rhesus monkey kidney cells (MA104) in the presence of trypsin as described previously (4, 6). The SA dependence or independence of the infectivities of all virus strains was measured in confluent MA104 cells grown in 96-well plates essentially as described previously (4). Briefly, MA104 cells were treated for 1 h at 37°C with 100 µl of twofold dilutions of neuraminidase from Arthrobacter ureafaciens or Vibrio cholerae purified by affinity chromatography (Sigma Chemical Co., St. Louis, Mo.) starting at 20 mU/ml or with 100 µl of TNC buffer (10 mM Tris [pH 7.5], 140 mM NaCl, 10 mM CaCl2) as a control. Following treatment with neuraminidase, cells were washed with TNC buffer prior to inoculation with a single dilution (depending on the rotavirus strain) of 200 to 500 focus-forming units (FFU). After the virus was allowed to adsorb for 2 h at 37°C, the inoculum was removed and cells were washed with 199 medium (Irvine Scientific, Santa Ana, Calif.) supplemented with 3 mM L-glutamine and 4.5 g of sodium bicarbonate per liter. Cells were incubated for 16 to 18 h at 37°C with 199 medium, washed with phosphate-buffered saline, fixed with cold methanol, and stained for fluorescent focus assay as described previously (4). Infectivity assays (fluorescent focus assays) were performed at least three times with each virus strain. Viral infectivity was expressed as a percentage reflecting the number of FFU in neuraminidase-treated cells relative to the number observed in control (TNC buffer-treated) cells. If infected cells were fixed and stained immediately after the adsorption period, no fluorescent foci were observed (data not shown). Similar reductions in the levels of infectivity of the SA-dependent SA11 Cl3 rotavirus strain were observed following the treatment of MA104 cells with neuraminidase from A. ureafaciens or V. cholerae (data not shown). Therefore, neuraminidase from A. ureafaciens was selected for the experiments performed in this report. In addition, it has recently been shown that the treatment of MA104 cells and polarized epithelial Caco-2, HT-29, and MDCK-1 cells with neuraminidase from A. ureafaciens removes the SA residues required for the efficient binding and infectivity of SA-dependent rotavirus strains (6).
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TABLE 1. Species of origin, P and G serotypes and genotypes, and sources of rotavirus or reassortant rotavirus strains used in this study
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FIG. 1. Effects of treatment of MA104 cells with neuraminidase (from A. ureafaciens) on the infectivities of P[1] and P[2] bovine and simian rotavirus strains reported previously (A); P[3] human, simian, canine, and feline rotavirus strains (B); P[7] porcine rotavirus strains (C); P[5] bovine and porcine rotavirus strains (D); P[4], P[6], and P[8] human rotavirus strains (E); P[9], P[10], P[11], and P[14] feline, human, and bovine rotavirus strains (F); P[12], P[13], and P[15] equine, porcine, and ovine rotavirus strains (G); P[16], P[17], P[18], and P[19] murine, avian (chicken), equine, and porcine rotavirus strains (H); P11[14] human-human reassortant and P5B[3] RRV-human rotavirus reassortant strains (I); and P7[5] UK-human rotavirus reassortant candidate vaccine strains (J). Viral infectivity was expressed as a percentage reflective of the number of FFU in neuraminidase-treated cells relative to the number observed in control (TNC buffer-treated) cells. Values shown are the arithmetic means of results from at least three replicate experiments. Error bars represent 1 standard error of the mean. The genotype and serotype are given in parentheses for each strain. Abbreviations: Si, simian; Eq, equine; Po, porcine; Ca, canine; Fe, feline; Bo, bovine; Ov, ovine; Mu, murine; Hu, human.
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SA-independent rotavirus strains belonging to P genotypes [4] to [6], [8] to [14], [16], and [20] do not agglutinate human type O red blood cells, whereas the SA-independent equine rotavirus strain L338 does hemagglutinate (4, 19, 24, 31). The ability of SA-independent P[15], P[17], and P[19] rotavirus strains to hemagglutinate is not known. The infectivities of the SA-independent murine strains EB and EDIM and equine strain L338 (Fig. 1H) were slightly reduced in comparison to those of other SA-independent rotavirus strains, but the degree of infectivity reduction did not depend on the neuraminidase concentration. The same effect was observed for EHP, EW, and EC, the other SA-independent murine strains tested (4, 24). This reduction of infectivity suggests that SA could still be involved in the initial stage of the infectivity process of the SA-independent murine strains EB and EDIM and equine strain L338. The ability of equine rotavirus strain L338, but not murine strain EW, to hemagglutinate (19, 24) suggests that strain L338 may still bind to SA residues but that murine strain EW may not bind to SA residues. However, further analyses are required to determine if the equine P[18] strain L338 and all the murine P[16] and P[20] strains bind to SA residues to initiate infection.
Although our results indicate that the SA dependence and SA independence phenotypes are segregated according to the VP4 P genotype, Méndez et al. (27) reported that SA residue binding may be affected by altered VP4-VP7 interactions. We tested a series of rotavirus strains with different combinations of VP4 and VP7 specificities (Table 1); to further analyze the role of SA residues on the cell surface in initiating rotavirus entry into cells, the single-gene reassortant strain PA169 x DS-1 (P11[14], G2) (15) and the RRV-human and UK-human rotavirus reassortant candidate vaccine strains RRV x D (P5B[3], G1), RRV x DS-1 (P5B[3], G2), RRV x ST3 (P5B[3], G4), UK x D (P7[5], G1), UK x DS-1 (P7[5], G2), UK x P (P7[5], G3), and UK x ST3 (P7[5], G4) (29, 30) were tested for infectivity in neuraminidase-treated MA104 cells. Like the infectivity of the parental RRV strain (Fig. 1B), the infectivities of the reassortant strains RRV x D and RRV x ST3 were still found to depend on the presence of SA residues on the cell surface (Fig. 1I). Contrary to certain previous results (27) but consistent with those of Ludert et al. (25), the RRV x DS-1 reassortant strain was SA dependent, as was the RRV parental strain (Fig. 1I). In addition, reassortant strain PA169 x DS-1 and all four UK-human rotavirus strains were SA independent, as expected (Fig. 1I and J, respectively). Therefore, our results indicate that the dependency on SA residues in rotavirus entry is mediated by VP4 and not by VP7. In fact, the initial interaction of rotavirus strains with SA residues on the cell surface correlated exclusively with the VP4 genotype (P = 0.001; r2 = 1.00, Pearson's correlation coefficient), not with the species of origin, and was not affected by associations with different VP7 G serotype specificities.
Table 2 summarizes whether all rotavirus and reassortant strains tested to date initially require SA residues on the cell surface for infectivity. To study the relatedness of the P genotype amino acid sequences of SA-dependent and SA-independent animal and human rotavirus strains, the amino acid sequences of the VP8* cleavage products of VP4 were aligned by using the PILEUP program, and parsimonious phylogenetic trees were generated by using the PAUP program (Wisconsin Package, version 9.1; Genetics Computer Group, Madison, Wis.). The validities of the resulting trees were tested by bootstrap analysis, and a consensus tree of 95% majority rule is presented for all VP8* sequences analyzed (Fig. 2). Each of the VP8* sequences of rotavirus strains belonging to each of the 20 P genotypes for which we know whether the presence of SA residues on the cell surface is required for efficient binding and infectivity formed a distinct branch on the phylogenetic tree. The VP8* sequences of SA-dependent rotavirus strains belonging to P genotypes [1], [2], [3], and [7] formed four closely related clusters (one for each P genotype) at the center of the phylogenetic tree. The VP8* sequences of SA-independent rotavirus strains belonging to the other known P genotypes showed a more complex pattern of phylogenetic relatedness, with most rotavirus strains falling into two multipart clusters, one including rotavirus strains from P genotypes [9], [11], [13], [14], [16], and [20] (Fig. 2, top) and the other including rotavirus strains from P genotypes [4], [5], [6], [8], [10], [12], [15], [18], and [19] (bottom). The VP8* sequence of the SA-independent rotavirus strain Ty-1 (P[17]) formed a distinct, independent branch. From the clustering of the VP8* sequence of the single P[18] equine strain L338 (Fig. 2), it would be difficult to predict the SA dependency of strain L338, because both the P[18] strain and all the P[1] strains have a common root in the phylogenetic tree. However, strain L338, which is known to hemagglutinate (19), may still bind SA residues indirectly, in a fashion similar to that of the isolated RRV variants that are no longer SA dependent for infectivity but retain HA activity (26). The VP8* sequence of the SA-independent Lp14 (P[15]) rotavirus strain clustered very closely to that of L338, but whether the P[15] ovine Lp14 rotavirus strain is able to hemagglutinate remains to be determined. Within P genotypes, minimal genetic distances often correspond with a common species of origin, as suggested previously (37), but there was not a tendency toward greater similarity associated with G serotype specificity. Although this could be a sampling artifact, it is suggestive of a relatively well-conserved gene belonging to the same VP4 genotype within a common species of origin. The finding that the amino acid sequences of the VP8* cleavage products of VP4 of all animal and human SA-dependent rotavirus strains formed a major cluster distinct from all other animal and human SA-independent rotavirus strains indicates that the requirement of the SA residue on the cell surface for efficient infectivity is associated with the P type rather than the species of origin, since all P[1], P[2], P[3], and P[7] animal and human rotavirus strains infect cells in an SA-dependent manner.
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TABLE 2. Summary of initial interactions of 76 rotavirus strains, of different P and G types, with SA residues on the surfaces of MA104 cells
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FIG. 2. Phylogenetic relationships among the VP8* cleavage products of the VP4 spike proteins of 52 animal and human rotavirus strains representative of the 20 known P genotypes, for which we know if the presence of SA residues is required for efficient adsorption to and infectivity of MA104 cells. The tree shows an analysis based on amino acid sequences deduced from the gene encoding the VP8* cleavage product of VP4 and was constructed by using the PAUP program (Wisconsin Package, version 9.0). A consensus tree of 95% majority rule is presented. The tree is rooted with the VP8* amino acid sequence of the group A avian (turkey) rotavirus strain Ty-1. The vertical distances are arbitrary. VP8* amino acid sequence data were obtained from the following rotavirus strains, with the GenBank accession numbers in parentheses: SA11 4F (X57319), NCDV (VPXRT2), RF (U65924), BRV033 (U62155), SA11 Cl3 (M23188), RRV (M18736), CU-1 (D13401), K9 (D13400), Cat97 (D13402), HCR3a (L19712), DS-1 (P11196), L26 (M58292), UK (P12474), WC3 (AY050271), B-641 (M63267), 678 (D32054), 4S (L10358), Gottfried (M33516), ST3 (L33895), 1076 (P11198), M37 (L20877), OSU (X13190), TFR-41 (L07889), CRW-8 (L07888), H-1 (D16341), YM (P25174), MO (AB008278), YO (AB008279), Wa (L34161), KU (M21014), K8 (D90260), Cat2 (D13403), 69M (M60600), B223 (M92986), I321 (L07657), H-2 (D13397), FI-14 (D13398), FI-23 (D13342), A46 (AY050274), Mc35 (D140032), HAL1166 (L20875), PA169 (L20874), ALA (U62149), C-11 (U62150), Lp14 (L11599), EW (U08429), EB (U08419), EC (U08421), Ty-1 (L41493), L338 (D13399), 4F (L10359), and EHP (U08424). On the figure, the genotype and serotype for each strain are given in parentheses. Abbreviations: Si, simian; La, lapine; Eq, equine; Po, porcine; Ca, canine; Fe, feline; Bo, bovine; Ov, ovine; Mu, murine; Hu, human.
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TABLE 3. Comparison of the VP8* trypsin cleavage products of VP4 proteinsa
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Many of the SA-dependent rotavirus strains (SA11, RRV, NCDV, and OSU) were originally isolated at least 2 decades ago and have been used as prototypes or reference strains in many laboratories because, in general, SA-dependent strains grow in tissue culture at titers 10 to 100 times higher than those of SA-independent strains and are more stable at 4°C (data not shown). Tissue culture adaptation of these P[1], P[2], P[3], and P[7] viruses did not select SA-dependent viruses, because porcine and bovine fecal specimens, presumably containing P[7] and P[1] strains, respectively, are able to form large plaques directly out of stools and they hemagglutinate prior to passage in cell culture. While the requirement of SA residues on the cell surface may be a characteristic necessary for efficient growth in cell culture, interesting questions are why do SA-dependent rotavirus strains grow more efficiently in cell culture than SA-independent rotavirus strains and why does the dichotomy between SA-dependent and SA-independent strains exist? It will also be of interest to determine what property of VP4, in SA-dependent rotavirus strains, is responsible for the efficient growth in cell culture and if this property has relevance to pathogenesis in vivo. Finally, these studies focus interest on testing of whether SA-independent variants isolated from SA-dependent strains are as infectious in animals as the parental SA-dependent strains are. In the cases of mengovirus, transmissible gastroenteritis virus, and mouse cytomegalovirus, the loss of binding activity to SA residues or the occurrence of HA results in a change in pathogenicity (1, 22, 34). Although there is not enough epidemiological information on canine, feline, and simian rotaviruses, the genotype most commonly found circulating in pigs is P[7], while both SA-dependent P[1] and SA-independent P[5] genotypes are equally common in cows (2, 3, 12; López et al., submitted). It is not known whether the prevalence of rotaviruses of genotypes P[7] and P[1] among pig and cow populations, respectively, relates to the fact that they are more commonly associated with disease or that they may spread more rapidly, thereby facilitating their identification at any given time. Future genetic approaches can address possible links between the biological relevance of binding to SA residues, pathogenicity, and transmission as well as continue to probe the molecular mechanisms related to VP4 that affect the early rotavirus-cell interactions in cell culture models.
This work was supported by National Institute of Diabetes and Digestive and Kidney Disease grant DK30144, grant DK56338 to the Texas Gulf Coast Digestive Diseases Center, and NHS Executive (Eastern) grant HSR/1199/6.
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a, P., S. López, L. Segovia, and C. F. Arias. 1997. Functional and structural analysis of the sialic acid-binding domain of rotaviruses. J. Virol. 71:6749-6756.[Abstract]
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