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Journal of Virology, April 2002, p. 3388-3394, Vol. 76, No. 7
0022-538X/02/$04.00+0 DOI: 10.1128/JVI.76.7.3388-3394.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
CNRS UPR9051, Hôpital Saint-Louis, 75475 Paris Cedex 10,1 Unité d'Immunologie Virale, Institut Pasteur, 75724 Paris Cedex 15, France,3 Department of Genetics, Erasmus University, Rotterdam, The Netherlands2
Received 12 November 2001/ Accepted 4 January 2002
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The auxiliary Bet protein of the prototypic HFV is a 482-amino-acid (aa) protein generated by alternative splicing that fuses the first 88 residues of Tas to 394 aa of ORF2 (Fig. 1A). Highly expressed in acute-infection and chronically infected cells, Bet was also shown to be secreted by producing cells and internalized by naïve ones (6). Although the functions of Bet in the replication cycle remain unknown, its integrity is absolutely required for efficient replication of the feline foamy virus (1) and for that of HFV to a much lesser extent (2, 34). Besides its involvement in acute infection, Bet was shown to be implicated in the establishment and/or maintenance of viral persistence. Indeed, in chronically infected cells, a Tas-defective genome, namely
HFV, negatively interferes with the replication of the parental virus by the production of Bet (24, 26). Moreover,
HFV represents the predominant viral form detected in the blood and organs of chronically infected rabbits (25). In line with these observations, HFV Bet-expressing cell lines were shown to be resistant to productive HFV infection (3). In these settings, the effect of Bet seems to take place during the early steps of infection, after virus entry but before provirus establishment.
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FIG. 1. Intracellular trafficking of the HFV Bet protein. (A) Schematic representation of the 3' end of the HFV provirus. A 301-bp splice generates the Bet mRNA. IP, internal promoter; 88 aa, 88 first residues shared with Tas. (B) Immunoprecipitation of nuclear (N) and cytoplasmic (C) fractions of radiolabeled HFV-infected U373-MG cells using rabbit polyclonal anti-HFV antibodies. Bet was detected in both fractions, while the viral glycoproteins Env and Env-Bet were strictly cytoplasmic. Immunoprecipitation using the monoclonal anti-Bet antibody (D11) of nuclear and cytoplasmic fractions of radiolabeled Cos6 cells transfected with a Bet-expressing vector (pSGHFV-Bet) confirms the nucleocytoplasmic distribution of Bet. The efficiency of the subcellular fractionation is assessed by Western blotting using a monoclonal antibody directed against LDH. (C) Confocal section of Cos6 cells transfected with pSGHFV-Bet using D11 reveals Bet in both the nucleus and the cytoplasm, 48 h posttransfection. The nuclei were revealed with DAPI.
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First, an XmaI site was introduced by PCR at the 5' end of the Bet genomic clone in pSGHFV-Bet. The GFP sequence was introduced into the XmaI-NruI sites of the mutated pSGHFV-Bet (mutant GB1). This plasmid was digested by BamHI and BglII, allowing the fusion of green fluorescent protein (GFP) with the first 82 residues of Bet (mutant GB2). The RRPRRYTKREVK sequence resulting was ligated to the C terminus of GFP (mutant GB3). The Bet sequence from aa 394 to 467 was introduced by PCR into the BglII-EcoRI sites of pEGFP-C1 (mutant GB4). Basic sequences of Bet were then removed by PCR, deleting residues 445 to 449 (mutant GB6) or residues 460 to 462 (mutant GB5). From the GB5 mutant, GB10 (deletion of aa 394 to 405) and GB9 (deletion of aa 394 to 416) were generated. The RRKIR sequence was then ligated to the C terminus of GFP (mutant GB7). The DYTDRRKIRTLTE sequence was fused to GFP by a deletion performed on GB5 (mutant GB8). Deletion was performed in pSGHFV-Bet, leading to a recombinant vector encoding Bel2.
Bet residues 406 to 454 were amplified by PCR and ligated to the N-terminal end of lacZ gene in pCH110 (mutant L1). Finally, sequences coding for residues 444 to 449 were removed from pSGHFV-Bet (mutant B1). Primers used for the generation of recombinant plasmids are available on request.
To produce the EFV Bet expressing vector, the 3' end EFV genome (nucleotides [nt] 9430 to 11885) was amplified from a
EMBL3 clone harboring a full-length EFV genome using the following primers: GGA ATT CAG GAT ATT ATC ATG GCT A and CCC AAG CTT ATG GTT CTC GAA TAA AGC GGT (the HinDIII site is underlined). This PCR product was subsequently cloned into the pSG5M plasmid (provided by Libin Ma, Leiden, The Netherlands) in EcoRI and HindIII, leading to the pEFV-AUX vector. The 297-bp intron was deleted from the pEFV-AUX by using primers TCC CCA GCT CAT CTG ACT and CAC TTT GTA AGC TGA AGA, leading to an EFV Bet-expressing vector, pSGEFV-Bet.
The Env-Bet-expressing vector (p1EB) was previously described (6).
RT-PCR experiments. For reverse transcriptase (RT)-PCR analysis, total cellular RNAs from EFV-infected cells were extracted with an RNA extraction kit (Bioprobe Systems). RT-PCR experiments were performed with the Access RT-PCR system (Promega). Briefly, 500 ng of total RNA was used as a template for the synthesis of the first-strand cDNA for 45 min at 48°C in the presence of avian myeloblastosis virus RT. After denaturation at 94°C, the synthesis of the second strand and enzymatic amplifications were carried out with Tfl DNA polymerase for 40 cycles of 94°C for 45 s, 63°C for 45 s, and 72°C for 1 min. The primers used were GGC TAG CAG CTC TTG GAC CC (nt 9443 to 9462) and GTC AAA TTC CTG AAG AGC TGA ATC (nt 10140 to 10163). PCR products subcloned into the pGEM-Easy vector (Promega) were sequenced with the ThermoSequenase kit (United States Biochemicals).
Cells and virus. Mycoplasma-free HFV stocks were produced on U373-MG cells, a human neural cell line, maintained in Dulbecco's modified Eagle's medium (Gibco-BRL) supplemented with L-glutamine (2 mM), penicillin (100 µg/ml), streptomycin (50 µg/ml), HEPES (240 mM), and 5% heat-inactivated fetal calf serum (FCS). Cos6 and BHK21 cells were maintained in the same medium. Virus stocks were subjected to titer determination by the LTR-GFP reporter BHK21 (FAG) cells (31). Mycoplasma-free EFV stocks were produced on ED cells, a horse fibroblast cell line, maintained in RPMI medium with 8% FCS.
Intercellular trafficking was studied by using 5 x 105 Cos6 cells seeded in lower and upper chambers of a Transwell-Clear-based culture system (0.4-µm pore size; Costar).
Transfection experiments. A total of 5 x 105 cells were transfected with 1 µg of recombinant plasmid and the Lipofectin reagent (Gibco-BRL) as specified by the manufacturer. Forty-eight hours posttransfection, cells were fixed for immunofluorescence or lysed in lysis buffer for protein analysis. All plasmids used for transfection were purified on anion-exchange resin columns (Qiagen).
Immunofluorescence analysis. Forty-eight hours posttransfection, cells were fixed with 4% paraformaldehyde at 4°C for 5 min and permeabilized with 100% methanol at 4°C for 10 min. Antibodies used were a rabbit anti-HFV antiserum (7), used at a 1/600 dilution in phosphate-buffered saline-Tween 20 (0.1%)-bovine serum albumin (0.2%), containing a monoclonal antibody against the HFV Bet protein, D11 (used at a 1/400 dilution), a polyclonal antibody against the ß-galactosidase (used at a 1/100 dilution; Euromedex), and a rabbit anti-EFV serum (used at a 1/400 dilution). The latter was obtained after infection of male New Zealand rabbits by a single intravenous dose of EFV stock. Anti-immunoglobulin G-fluorescein isothiocyanate (FITC)-coupled antibodies (Biosys) were used as second fluorescent conjugates and when used alone gave no staining on infected or transfected cells. Nuclei were revealed with 4',6'-diamidino-2-phenylindole (DAPI) (Sigma) at 250 ng/ml.
For confocal analysis, cells were embedded in Mowiol (Calbiochem) and examined by using a Bio-Rad MRC-1024 confocal imaging system (Bio-Rad Microscience Ltd.) and an inverted Diaphot 300 Nikon microscope. For fluorescein, a krypton/argon ion laser (Ion Laser Technology Inc.) operating with the 488-nm line was used. Images of FITC and DAPI were pseudocolored in green for FITC and blue for DAPI.
Protein analysis. For radioimmunoprecipitation, 107 cells were labeled with [35S]methionine-cysteine (50 µCi/ml; 1,245 Ci of specific activity per mmol; Dupont NEN) for 16 h in minimal essential medium (MEM; Gibco-BRL) lacking methionine-cysteine and supplemented with 5% FCS. Cells were lysed in 50 mM Tris-HCl (pH 7.4), 100 mM NaCl, 5 mM MgCl2, 1% Triton X-100, 0.5% sodium deoxycholate, 0.05% sodium dodecyl sulfate (SDS), 1 mM phenylmethylsulfonyl fluoride for 30 min at 4°C. Nuclei were separated from the lysate by centrifugation at 12,000 x g for 5 min at 4°C and lysed in the same buffer containing 1 M NaCl. Immunoprecipitation of viral proteins with specific antisera was performed as previously described (7).
For the study of HFV Bet internalization, supernatant of radiolabeled Cos6 cells was filtered with a 0.45-µm-pore-size filter (Corning).
For the pulse-chase experiment, cells were radiolabeled with [35S]methionine-cysteine for 2 h and then chased for 4 or 8 h in cold medium. Treatment with 10 µg of brefeldin A (BFA) (Roche) per ml was performed during the entire pulse-chase period. Chase media and cell lysates were immunoprecipitated with polyclonal anti-HFV antibodies and analyzed by SDS-PAGE.
For Western blot analysis, cells were heat disrupted at 100°C for 5 min in Laemmli sample buffer. About 50 µg of protein extracts were resolved by SDS-PAGE and transferred by electroblotting onto a polyvinylidene difluoride membrane (Immobilon-P; Millipore). To detect lactate dehydrogenase (LDH), we used a goat anti-LDH antibody (Sigma) (used at a 1/2,000 dilution in phosphate-buffered saline-Tween) and then a peroxidase-conjugated anti-goat antibody (Biosys), used at a 1/3,000 dilution. HFV Bet was detected with monoclonal antibody D11 used at 1/400 dilution and then a peroxidase-conjugated anti-mouse antibody (Biosys), used at a 1/8,000 dilution. EFV Bet was detected with rabbit anti-EFV antibodies, described above, used at a 1/600 dilution, and then with a peroxidase-conjugated anti-rabbit antibody (Biosys), diluted 1/8,000. Western blot results were revealed by enhanced chemiluminescence (Amersham).
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These results were confirmed by immunofluorescence since Bet was detected both in the cytoplasms and in the nuclei of pSGHFV-Bet transfected Cos6 cells by confocal analysis (Fig. 1C).
Secretion of HFV Bet is not dependent on the classical endoplasmic reticulum (ER)-Golgi secretory pathway. Since HFV Bet was previously shown to be secreted and internalized by surrounding cells (6), we sought to determine whether Bet targets the nuclei of recipients cells. For that purpose, Cos6 cells were transfected with pSGHFV-Bet and labeled overnight with a [35S]methionine-cysteine-containing medium, 48 h posttransfection. The next day, the cell-free supernatant was added to 106 naïve Cos6 cells at 37°C for 4 h. Cytoplasmic or nuclear fractions from transfected or recipient cells were then immunoprecipitated with rabbit anti-HFV antiserum. As shown in Fig. 2A, Bet was detected in the nuclei of transfected and recipients cells.
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FIG. 2. (A) HFV Bet targets the nuclei of recipient cells. Cos6 cells were transfected with pSGHFV-Bet, and 48 h later, cells were labeled overnight and cell-free supernatant was incubated with naïve Cos6 cells. Nuclear and cytoplasmic fractions of transfected and recipient cells were immunoprecipitated with rabbit anti-HFV antiserum and analyzed by SDS-PAGE. (B) HFV Bet secretion is not dependent on the classical ER-Golgi pathway. Aliquots of pulse-chase media and cell lysates immunoprecipitated with polyclonal anti-HFV antibodies reveal that, although Env-Bet secretion is inhibited upon treatment with BFA (10 µg/ml), secretion of Bet is not affected in these settings.
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These observations demonstrated that secretion of HFV Bet occurred via a nonclassical, Golgi apparatus-independent mechanism.
NLS at the C terminus of HFV Bet. While small proteins are thought to passively diffuse between the cytoplasm and the nucleus, larger molecules, like HFV Bet protein (62 kDa), have to harbor specific signals allowing their active translocation through the nuclear pore complex (8). Analysis of the primary sequence of HFV Bet, based on sequence homology with most documented basic nuclear localization signals (NLSs) (PSORTII software), revealed two such putative sequences: one monopartite NLS at the N terminus (47RRPRRYTKREVK58) and one bipartite motif at the C terminus (445RRKIRX10RKR462) (Fig. 3A). To assess the functionality of these motifs, the corresponding sequences, flanked with various lengths of their amino acid environment, were fused to the GFP reporter gene (Fig. 3B) and fluorescence was directly monitored on live transfected Cos6 cells. The parental GFP localized in both the cytoplasms and the nuclei of transfected cells, according to its molecular mass (27 kDa; Fig. 4A). This nucleocytoplasmic distribution was affected neither by fusion with the minimal sequence 47RRPRRYTKREVK58 (construct GB3) nor by the addition of neighboring amino acids (Bet residues 2 to 82, construct GB2; Fig. 4A). Thus, the basic sequence located at the N terminus of Bet did not meet the criteria of a classical NLS.
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FIG. 3. (A) HFV Bet primary structure. Computer analysis, performed by the PSORTII software, revealed the presence of two putative NLSs: a monopartite NLS at the N terminus of Bet (aa 47 to 58, RRPRRYTKREVK) and a bipartite NLS at the C terminus (aa 445 to 462, RRKIRX10RKR). (B) Schematic representation of the derivative GFP and ß-galactosidase Bet fusions.
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FIG. 4. Characterization of an NLS at the C terminus of Bet. (A) Direct fluorescence analysis of live Cos6 cells transfected with the GB2 construct reveals that Bet residues 2 to 82 do not affect the subcellular distribution of the GFP. Confocal section of Cos6 cells transfected with the Bel2 construct shows that this protein is located mainly in the nucleus. The nuclei were revealed with DAPI. (B) Phase-contrast (top) and corresponding fluorescence photomicrographs (bottom) of live transfected Cos6 cells. Although the wild-type GFP is equally distributed in the nucleus and the cytoplasm, fusion with the C-terminal domain of Bet from residues 394 to 467 allows the nuclear targeting of the corresponding fusion protein (GB4). Deletion of the 445RRKIR449 sequence totally abolishes the nuclear pattern (GB6). The sequence spanning aa 406 to 459 constitutes a functional NLS (GB10). (C) Confocal section of the L1 and B1 mutants. The wild-type ß-galactosidase is strictly localized in the cytoplasm, whereas mutant L1 is also detected in the nuclei of transfected cells. Deletion of residues 445 to 449 (RRKIR) on HFV Bet (mutant B1) reveals that this protein is strictly confined in the cytoplasm. The nuclei were revealed with DAPI.
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Since GFP passively diffuses through the nuclear pore, we could not exclude that the characterized signal was only a nuclear retention signal. To test this hypothesis, a fusion protein between Bet residues 406 to 459 and the ß-galactosidase reporter was generated (mutant L1). Expression of the wild-type ß-galactosidase led to a strict cytoplasmic staining due to its molecular mass (i.e., 115 kDa; Fig. 4C). Conversely, the L1 mutant was detected in the cytoplasms but also in the nuclei of transfected cells (Fig. 4C), demonstrating that the Bet sequence between aa 406 to 459 constituted an effective NLS.
Finally, the involvement of this bipartite NLS in the Bet context was studied. A mutant, which harbored a deletion of the distal basic stretch (residues 445 to 449, mutant B1) was generated, and its subcellular localization was studied by indirect immunofluorescence by use of rabbit anti-HFV polyclonal antibodies. Confocal analysis revealed that mutant B1 was strictly localized in the cytoplasm (Fig. 4C). This result confirmed the involvement of residues 445 to 449 in the nuclear targeting of HFV Bet, as previously described with the GFP and ß-galactosidase reporters.
Inter- and intracellular trafficking of EFV Bet protein.
To assess whether the nucleocytoplasmic distribution of HFV Bet is encountered for other FV Bet proteins, the subcellular localization of EFV Bet was investigated. For that purpose, an EFV Bet-expressing vector was generated. The splice sites leading to the synthesis of the EFV Bet mRNA were identified by RT-PCR on total RNAs extracted from EFV-infected BHK21 cells, revealing that the splice donor and acceptor sites are located at positions 9562 and 9859, respectively. This splice event fuses the first 40 aa of EFV Tas to the entire ORF2 (329 aa), leading to a Bet protein of 440 aa (Fig. 5A). Concomitantly, the 3' end of EFV was amplified by PCR on a
EMBL3 clone harboring a full-length EFV genome, and the 297-bp Bet intron was subsequently deleted by PCR, leading to the pSGEFV-Bet vector. Expression of pSGEFV-Bet was tested by Western blotting, revealing that EFV Bet migrated at 56 kDa (data not shown). Indirect immunofluorescence, using polyclonal anti-EFV antibodies, showed that EFV Bet was detected in both the nuclei and the cytoplasms of pSGEFV-Bet-transfected Cos6 cells (Fig. 5B). We further confirmed the nucleocytoplasmic distribution of EFV Bet on radiolabeled EFV-infected BHK21 cells. Nuclear and cytoplasmic fractions, immunoprecipitated with rabbit anti-EFV antibodies, showed that EFV Bet was detected in both the nucleus and the cytoplasm of infected cells (Fig. 5C). Note that, as described for HFV Gag, the EFV Gag doublet was detected mainly in the nucleus.
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FIG. 5. Inter- and intracellular trafficking of EFV Bet protein.(A) Schematic representation of the 3' end of the EFV provirus. A 297-bp splice generates the Bet mRNA. 40 aa, 40 first residues shared with Tas. (B) Confocal analysis of pSGEFV-Bet-transfected Cos6 cells using anti-EFV polyclonal antibodies confirms the nucleocytoplasmic distribution of EFV Bet. (C) Immunoprecipitation of nuclear (N) and cytoplasmic (C) fractions of radiolabeled EFV-infected BHK21 cells. EFV Bet is detected in both fractions. Western blot analysis using anti-LDH antibodies attests to the efficiency of the subcellular fractionation. (D) Western blot analysis of Cos6 cells, seeded in the lower chamber and transfected with EFV or HFV Bet-expressing vectors, and of upper naïve cells reveals that EFV Bet exhibits the same intercellular movement as HFV Bet. EFV Bet and HFV Bet were detected with anti-EFV and anti-HFV polyclonal antibodies, respectively. As a control, an HFV Gag-expressing vector was transfected in Cos6 cells in the lower chamber, showing the characteristic Gag precursor at 71 kDa only in transfected cells.
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Taken together, our results showed that EFV Bet shared the same intra- and intercellular trafficking as HFV Bet.
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EFV Bet exhibits these inter-and intracellular movements. Given that EFV is the FV most phylogenetically distant from HFV, our results support the idea that these features are conserved among FVs. The remarkable property of spreading between cells is shared by several proteins, like Drosophila Antennapedia, human immunodeficiency virus type 1 Tat, or herpes simplex virus type 1 VP22, which lack a signal sequence but can traverse biological membranes (29). Linking these proteins to compounds, peptides, or nucleic acids lets them enter any cell type in a receptor- and transporter-independent manner. Interestingly, preliminary studies revealed that HFV Bet allowed the secretion of a Bet-GFP fusion protein (data not shown), suggesting that Bet can also transduce a heterologous protein.
Proteins lacking a signal peptide presumably exit cells through alternative, nonclassical, BFA-insensitive routes by which they are released into the medium in free forms or within vesicles. Although the precise mechanisms of these secretions are largely unknown, the cytoskeleton underlying the plasma membrane was shown to be required in certain cases (12). For instance, the weakening of the actin network has been directly implicated in the formation of secretion vesicles enclosing alkaline phosphatase (9). In the case of annexin I, an interaction with bundles of actin beneath the plasma membrane is required for efficient secretion (13). These two proteins exit the cells by ectocytosis, a term first used to describe the shedding of right-side-out the membrane vesicles from the surface of neutrophils during sublytic complement attack (30). The broad mechanism appears to be the extrusion of excess membrane blebs from the cell surface releasing extracellular vesicles. In the case of Bet, we have shown that this protein is also detected at the vicinity of the plasma membrane, where it colocalizes with the cortical actin (data not shown). Note, in that sense, that it has already been suggested that Bet could be a membrane-associated protein (23) and could participate in viral budding (1). It remains to establish whether the actin-Bet interaction is directly involved in Bet secretion and subsequently whether Bet releases cells into vesicles, following the ectocytosis pathway. In the case of HFV, an intact microtubule network is absolutely required for the early stages of viral replication (27). Our observations point to a role of the cytoskeleton in the function of Bet too.
That Bet spreads to surrounding cells and moves into the nucleus suggests that these properties are relevant to some aspects of the virus cycle. Bock et al. reported that Bet expression, prior to FV infection, blocks the replication cycle at early stages (3). The nuclear localization of Bet suggests that this protein affects viral replication at nuclear stages, in particular at the import of the preintegration complex or provirus integration steps. Finally, through its secretion property, Bet could act from a distance to limit FV propagation, one possible mechanism to establish viral persistence. Indeed, while a Tas-defective provirus (
HFV) is detected in chronically infected hematopoietic cell lines, viral persistence is, in that case, associated with a constant production of infectious viruses (35), suggesting that the molecular basis of viral persistence seems to depend on the cell type (1). Moreover, deleterious mutations in the Bet gene were detected in a simian foamy virus isolated from a case of persistent zoonotic infection (4). Therefore, these observations suggest that several mechanisms have been developed by foamy viruses to persist in their hosts.
This work was supported by ARC (grant no. 5981) and F. Lacoste.
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