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Journal of Virology, April 2002, p. 3257-3266, Vol. 76, No. 7
0022-538X/02/$04.00+0 DOI: 10.1128/JVI.76.7.3257-3266.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
, and David J. Pintel*
School of Medicine, University of MissouriColumbia, Columbia, Missouri 65212
Received 19 September 2001/ Accepted 7 January 2002
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The role(s) NS2 plays in MVM replication remains unclear. In the absence of NS2, wild-type levels of the VP1 and VP2 structural proteins are synthesized at early times postinfection; however, they do not efficiently assemble into MVM capsids (5). Although the mechanisms are not well understood, the production of MVM progeny ssDNA is tightly connected to the availability of assembled MVM capsids (8), and so it is likely that, at least to some extent, the lack of progeny ssDNA produced during NS2 mutant infection is a consequence of the lack of proper capsid assembly. The lack of replication of monomer replicative DNA forms (mRF) and dimer replicative DNA forms (dRF) in NS2-null mutant infection is more difficult to explain, as this process is known to proceed efficiently in the absence of capsid production (23).
NS2 was recently shown to interact with two members of the 14-3-3 family of signaling proteins (3) and the nuclear export factor Crm1 (2, 21). Crm1 is a sequence-specific nuclear export receptor that binds leucine-rich sequences within proteins in cooperation with RanGTP and actively transports these proteins from the nucleus to the cytoplasm (9, 24). The NS2 interaction with Crm1 was previously shown to be important in proper localization of NS2 within the cell and was mapped to NS2 amino acids (aa) 81 to 103 by peptide analysis (N. Salome, personal communication) and glutathione S-transferase (GST) pull-down assays (21). The role of the NS2-Crm1 interaction during MVM infection, however, has not been determined.
We have investigated the consequence of the NS2 interaction with Crm1 during viral replication by creating a mutation within NS2 that disrupts its interaction with Crm1. In contrast to MVM NS2-null mutant replication, NS2-Crm1- mutants generate double-stranded replicative-form DNA at near-wild-type levels at early times postinfection; however, there is a striking decrease in the production of progeny ssDNA. We further show that this defect in ssDNA production is associated with a severe defect in the export of full MVM virions from the nucleus to the cytoplasm of the cell. Export of MVM virions from the nucleus is also blocked by the Crm1-specific inhibitor leptomycin B.
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Plasmid constructs. The MVM wild-type and NS2-null (1989) infectious clones were previously described (15, 18). The NS2-Crm1- MVM infectious clone was made by overlap PCR mutagenesis (10), changing MVM nt 1990 to 2008, such that the NS2 amino acids aa 84-FGTLJI-aa 89 were changed to aa 84-VCPVAV-aa 89 without altering the NS1 amino acid sequence. The complete coding region for the mutant protein was sequenced to ensure no additional mutations were introduced. The pCMVNS2 plasmid was previously described (16). The pCMVNS2-Crm1- plasmid was constructed by overlap PCR mutagenesis to incorporate the mutation of aa 84-FGTLJI-aa 89 to aa 84-VCPVAV-aa 89. PGEX-5X-NS2 was previously described (17). pGEX-5X-NS2-Crm1- was made by inserting the EcoRV-XhoI fragment from pCMVNS2-Crm1- into pGEX-5X-NS2. pETCrm1 and pCIHACrm1 were previously described (11) and were gifts of Mark Hannink, University of MissouriColumbia.
Immunoprecipitation and Western analysis.
A92L cells were transfected as indicated and collected 18 h posttransfection. Immunoprecipitation followed by Western blotting was performed as described previously (16). Antibodies used included rabbit polyclonal anti- (
)-NS2 C terminus, made against a peptide containing NS2 aa 156 to 182, and mouse monoclonal
-HA.11 (Covance, Richmond, Calif.).
Indirect IFAs.
A92L, ID5, or NB324K cells were grown on either coverslips or eight-well slides (Labtech) and infected at the indicated wild-type MOI. Coverslips or slides were processed for immunofluorescence assay (IFA) as described elsewhere (18) at the indicated times postinfection. Images were generated using a SPOT digital camera, and all images from each experiment were obtained at the same exposure time. Primary antibodies were used at a 1:100 dilution and included rabbit polyclonal
-NS2 made against the internal sequences of NS2 (4) and mouse monoclonal
-assembled capsid (12). Secondary antibodies were used at a 1:250 dilution and included fluorescein isothiocyanate (FITC)-conjugated
-rabbit and FITC-conjugated
-mouse antibodies (ICN Biochemicals).
RanGAP protection assay.
pGex-5X-NS2 and pGex-5X-NS2-Crm1- were transformed into and grown in Escherichia coli strain BL21(DE3)pLysS. GST-NS2 and GST-NS2-Crm1- protein expression was induced with 1 mM isopropyl-ß-D-thiogalactopyranoside (IPTG), and GST-conjugated proteins were purified with glutathione-agarose as described previously (17). pETCrm1 was transformed into and grown in E. coli strain BL21(DE3)pLysS cells. HISCrm1 protein expression was induced with 1 mM IPTG and purified by metal chelate affinity chromatography (Invitrogen) as described elsewhere (11). RanGAP protein was expressed in BLR pREP4 cells and purified by metal chelate affinity chromatography (Invitrogen). RanGAP protection assays were then done as described elsewhere (1, 11). Briefly, Ran protein was incubated with [
-32P]GTP (10 mCi/ml) for 30 min on ice in buffer containing 20 mM HEPES (pH 7.3), 100 mM potassium acetate, and 5 mM EDTA, followed by gel filtration on a Bio-Spin 6 column (Bio-Rad). Reaction mixtures containing increasing amounts of purified, beaded GST-NS2 or GST-NS2-Crm1- were incubated at 15°C for 30 min with 500 nM purified HisCrm1 and 50 pM [
-32P]RanGTP in 25 µl of hydrolysis buffer to allow GST-NS2 or GST-NS2-Crm1--HISCrm1-RanGTP ternary complexes to form. Ten nanomolar RanGAP was then added and the mixtures were incubated at 30°C for 2 min to allow hydrolysis of Ran GTP that was not protected in a ternary complex. The reaction mixtures were filtered through nitrocellulose, the filters were washed, and the filtered lysates were counted in the presence of 3 ml of scintillation fluid. Counts representing percent unbound (unprotected) hydrolyzed RanGTP were plotted against the concentration of NS2 wild-type or mutant protein present.
Southern analysis. Wild-type and mutant MVM replication forms produced during infection or transfection were visualized by Southern analysis of total cell extracts as previously described (18, 23). To equilibrate virus by ssDNA content, equivalent PFU of wild-type and mutant viral stocks extracted in 50 mM Tris-10 mM EDTA (pH 8.7) were added to micrococcal nuclease buffer and treated with micrococcal nuclease to remove associated MVM double-stranded DNA (dsDNA). Samples were then lysed in 2% sodium dodecyl sulfate (SDS) and treated with proteinase K (0.5 mg/ml) to remove viral capsid proteins. Samples were run on a 1% agarose gel, and Southern blot analysis was performed as described previously (18, 23). Blots were exposed to a Kodak phosphorimaging screen, and the ssDNA was quantitated by using a Bio-Rad Imager FX and Quantity One software where indicated.
Western blot analysis.
Cells collected 18 h posttransfection or viral stocks equilibrated by PFU or ssDNA were lysed in 2% SDS, and Western blot analysis was performed as described elsewhere (16). Antibodies used included rabbit polyclonal
-NS2 made against the NS2 C terminus (aa 156 to 182) and rabbit polyclonal
-capsid antibody (
-allopeptide) that was previously shown to interact with individual MVM capsid proteins VP1 and VP2 and, potentially, assembly intermediates (5).
Hemagglutination assay. Hemagglutination assays of MVM wild-type and mutant viral stocks equilibrated by ssDNA were performed as described previously (23).
NS1 infectious center assay.
MVM wild-type and mutant viral stocks equilibrated by ssDNA and added at equivalent wild-type MOIs or cell lysates and media isolated at various times postinfection and added at equivalent volumes were used to infect A92L, ID5, or NB324K cells. At 18 h postinfection, the cells were treated for IFA and stained with rabbit polyclonal
-NS1 primary antibody (4) followed by FITC-conjugated goat
-rabbit secondary antibody (ICN Biochemicals). Cells from at least three microscope fields were counted, and the number of NS1-positive cells per 100 total cells was plotted.
Assembled capsid and ssDNA ratio assay.
A92L cells were doubly blocked at the G1/S border by incubation in isoleucine-deficient medium followed by treatment with 12 µg of aphidicolin/ml (18). During the aphidicolin incubation, wild-type and mutant viruses were added at equivalent wild-type MOIs. At 8 and 12 h postrelease from aphidicolin, 35S was added at 100 µCi/ml. At 16 h postrelease from aphidicolin, cells were collected and immunoprecipitated with
-assembled capsid antibody in nondenaturing buffer as previously described (16). After immunoprecipitation samples were split into two, with one half processed for Southern blot analysis to visualize ssDNA while the other half was run on SDS-polyacrylamide gel electrophoresis (SDS-PAGE) to visualize labeled assembled capsid protein. DNA and protein gels were exposed to a phosphorimaging screen and quantitated using a Bio-Rad Imager FX and Quantity One software. Ratios of ssDNA associated with assembled capsid were determined and are shown below. Samples isolated at 8 h postrelease from aphidicolin were immunoprecipitated with the same antibody and processed for Southern blotting as a control for input viral ssDNA.
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-NS2, suggesting that the NS2 interaction with Crm1 was significantly lost in vivo as a result of the 6-aa mutation.
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FIG. 1. Mutation within the NS2 NES disrupts NS2 interaction with Crm1. (A) Graphical representation of the NS2 NES mutant sequence. (B) A92L cells were transfected with HA-Crm1 and either no plasmid, pCMVNS2, or pCMVNS2-Crm1-. At 18 h posttransfection, cells were immunoprecipitated with -NS2 antibody followed by Western blotting with -HA antibody (left panel). Parallel samples were subjected to Western blot analysis with either -NS2 (center panel) or -HA (right panel) antibody to visualize NS2 and HA-Crm1 protein expression. For reasons not yet determined, the mutant NS2 protein migrates slightly slower than the wild type. The complete coding region for the mutant protein has been sequenced and contains no additional changes. (C) Results of RanGAP protection assay using purified GST-NS2 () or GST-NS2-Crm1- ( ). Percent GTP hydrolysis is plotted against concentration of wild-type or mutant NS2 protein. (D) Localization of NS2 wild type and NS2-Crm1-. A92L cells were infected with either wild-type MVMp or NS2-Crm1- virus at an MOI of 5. At 24 h postinfection, cells were fixed and stained with -NS2 rabbit primary antibody and FITC-conjugated -rabbit secondary antibody. Images were obtained on a SPOT camera at the same exposure time.
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(11) and for studies of wild-type versus mutant NS2 NES peptide (1), suggesting that the NS2-Crm1- mutant loses functional interaction with Crm1. The NS2-Crm1- interaction mutation was then introduced into the infectious clone of MVMp. Similar to other NS2 mutants, the NS2-Crm1- infectious clone was seen to replicate very poorly following transfection of murine A9 cells yet replicated efficiently in NB324K cells, which allowed the generation of mutant viral stocks on permissive cells. A more detailed characterization of the replication of the NS2-Crm1- mutant virus is presented below.
While wild-type NS2 is found in both the nucleus and the cytoplasm of infected cells, it has been previously shown that NS2 is relocalized to the nucleus in the presence of the Crm1 inhibitor leptomycin B (2, 21). We therefore examined the cellular localization of the mutant NS2. Figure 1D shows that there was a significant redistribution of NS2-Crm1- mutant-generated NS2 to the nucleus, providing additional evidence that the 6-aa mutation within the NS2 NES resulted in a loss of in vivo interaction of NS2 with Crm1 during MVM infection.
Characterization of NS2-Crm1- mutant replication following transfection of permissive and nonpermissive cells. NS2 has been shown to play a critical role in MVM replication in a host-cell-specific manner following either viral infection or transfection of cloned NS2 mutants. There is little production of NS2-mutant dsDNA replication intermediates, and no detectable accumulation of viral progeny ssDNA in murine cells; however, replication is more significant in a variety of permissive cell types of other species (18). In contrast to other described NS2 mutants, the NS2-Crm1- mutant generated dsDNA mRF and dRF at levels nearly equal to those of the wild type at early times following transfection of both permissive NB324K cells and restrictive A9 and ID5 murine cells (Fig. 2). In restrictive murine cells, mutant mRF and dRF did not amplify at the same rate as with the wild type. In contrast, in permissive NB324K cells, the NS2-Crm1- mutant generated mRF and dRF at near-wild-type levels at both early and late times posttransfection. Strikingly, even at early times posttransfection of restrictive murine cells, a dramatic decrease in the accumulation of mutant viral progeny ssDNA was seen, and this decrease became relatively greater than wild-type levels as the transfection proceeded. We consistently detected at least 50-fold less of both cell- or media-associated virus (as assayed by either DNA content or the ability to generate NS1-positive cells) following the transfection into restrictive murine cells of the mutant clone compared to the wild type at times when levels of intracellularly replicating double-stranded replicative forms were similar (data not shown). The decrease in the production of mutant ssDNA was not seen at early times posttransfection of permissive NB324K cells; however, a slight decrease in the production of ssDNA was apparent at later times. These data indicated that the NS2 interaction with Crm1 was not necessary for early steps in MVM dsDNA replication after transfection; however, it was important for the efficient production of progeny ssDNA (required for reinfection) in restrictive cells and to a lesser extent in permissive cell lines.
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FIG. 2. The NS2 interaction with Crm1 is required for production of MVM ssDNA in restrictive cells following transfection. A92L, NB324K, and ID5 cells were transfected by the CaPO4 method with MVMp wild type, NS2-null mutant (A92L cells only), or the NS2-Crm1- mutant infectious clone. Cell samples were isolated at 4, 24, and 48 h posttransfection and processed for Southern blot analysis. Viral monomer (mRF), dimer (dRF), and ssDNA are indicated. Asterisks indicate input plasmid DNA.
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FIG. 3. NS2-Crm1- mutant virus characterization. (A) The NS2-Crm1- mutant is a small plaque mutant. Seven days postinfection with wild-type or NS2-Crm1- virus, NB324K cells were fixed and stained to visualize plaques. (B) The NS2-Crm1- mutant contains approximately 10 times more ssDNA per PFU than the wild type. Equivalent wild-type and NS2-Crm1- PFU were processed for Southern blot analysis. Micrococcal nuclease-resistant, encapsidated ssDNA is indicated. (C) NS2-Crm1- mutant viral stocks contain approximately 10 times less total capsid protein than the wild type does. Equivalent PFU or equivalent ssDNA units of wild-type and mutant viral stocks were run on SDS-PAGE gels, and Western blot analysis was performed using rabbit -allotropic primary antibody and horseradish-conjugated -rabbit secondary antibody. (D) The NS2-Crm1- mutant contains approximately 15-fold less hemagglutination activity than the wild type.
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FIG. 4. Equivalent NS2-Crm1- mutant ssDNA initiates infection at wild-type levels but is defective in ssDNA production following infection of murine cells. (A) Equivalent wild-type and NS2-Crm1- mutant ssDNA titers determined in previous experiments were validated by Southern blot analysis. (B) Equivalent titers of wild-type, 1989 (the NS2-null mutant; not shown in panel A), and NS2-Crm1- virus from stocks shown in panel A were used to infect A92L, NB324K, and ID5 cells at a wild-type MOI of 5. At 16 h postinfection, cells were fixed and processed for immunofluorescence using a rabbit -NS1 primary antibody and FITC-conjugated -rabbit secondary antibody. The number of NS1-positive cells per total cells in each field was counted and plotted on the graph. At least three separate fields in two separate experiments were counted and averaged. (C) A92L, ID5, and NB324K cells were infected with wild-type, NS2-null (1989), and NS2-Crm1- mutant virus at equivalent ssDNA titers at a wild-type MOI of 5. At 12, 20, and 48 h postinfection cells were collected and processed for Southern blot analysis. MVM mRF, dRF, and ssDNA (ss) are indicated. At 12 h postinfection, 0.05 U of neuraminidase/ml (+N) was added to one set of 48-h samples to prevent reinfection of surrounding cells in these samples.
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NS2-Crm1- mutant virus produces assembled MVM capsids that remain strikingly nuclear localized throughout infection. Examination of MVM assembled capsids at 16 to 20 h postinfection by IFA using an antibody shown to react exclusively with assembled capsids (13) showed that the mutant produced assembled capsids in amounts that were qualitatively similar to wild-type amounts in restrictive A92L cells at early times postinfection. However, whereas wild-type assembled virions were localized in both the nucleus and the cytoplasm, NS2-Crm1- mutant assembled virions were found predominantly in the nucleus of the infected cells (Fig. 5A, top panel). At later times during infection (48 h), the NS2-Crm1- mutant assembled capsids were still predominately nuclear, while wild-type assembled capsids were found primarily in the cytoplasm. Cytoplasm-localized wild-type virus seen at this time point are presumed to be full assembled capsids that have moved into a second round of infection of surrounding cells (Fig. 5A, middle panel); they are not seen when neuraminidase is added to prevent reinfection (data not shown). In permissive cells at both early and late times, there was also an increase in mutant nuclear-associated assembled capsids compared to that in the wild type. Some of the mutant virus, however, had clearly escaped the nucleus, as the overall distribution of assembled capsids in the permissive NB324K cells more closely resembled that of wild-type virus infection (Fig. 5A, bottom panel). Our results suggested that the NS2-Crm1- mutant is defective in export of assembled capsids out of the nucleus.
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FIG. 5. NS2 interaction with Crm1 is important for nuclear export of MVM virions during infection of murine cells. (A) A92L (top and middle panels) and NB324K (bottom panel) cells were infected with equivalent ssDNA titers of wild-type and NS2-Crm1- virus at a wild-type MOI of 5. (B) A92L cells were infected with wild-type (top panel) or mutant (middle panel) virus (MOI = 5) or transfected with pCIHACrm1 (bottom panel). At 12 h following infection or transfection, cells were treated with 10 nM leptomycin B where indicated and further incubated for 10 h. Cells in both panels A and B were fixed and processed for immunofluorescence using a mouse monoclonal -assembled capsid primary antibody and a FITC-conjugated -mouse secondary antibody.
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Nuclear-localized assembled capsids produced during NS2-Crm1- infection of restrictive cells contain ssDNA and remain fully infectious. Although at early times postinfection the NS2-Crm1- mutant capsids assembled at near-wild-type levels as measured by IFA, we could detect little progeny ssDNA on restrictive cells as measured by whole-cell Southern blotting. This suggested that either the mutant assembled capsids did not contain ssDNA or that the amount of ssDNA produced during mutant infection was below the limit of detection of our assay. Figure 6A shows that although there was an overall decrease in ssDNA-containing full virions produced in infection of A9 cells with the mutant compared to that with the wild type, there was a significant amount of full virus present, suggesting that our inability to detect ssDNA following transfection and infection of murine cells was likely to be because the amount of ssDNA produced in the mutant was below our limit of detection. However, there was also a concomitant decrease in the amount of assembled capsid protein produced on infection with the mutant; the relative ratio of capsid protein to ssDNA was approximately the same as that with the wild type. This suggested that at early times mutant virus encapsidation proceeded normally; however, when egress of capsids from the nucleus did not occur, continued production of assembled capsids and additional ssDNA was blocked.
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FIG. 6. The NS2-Crm1- mutant assembled capsids contain ssDNA and are fully infectious. (A) Highly synchronous A92L cells were infected with equivalent ssDNA titers of wild-type and NS2-Crm1- mutant virus at a wild-type MOI of 5. At 8 h postrelease, 100 µCi of Tran35S-label/ml was added. At 8 h after label was added, cells were collected and lysed in Tris-EDTA (pH 8.7) to release all of the virus from the cells. The pH was adjusted to 7.5 and immunoprecipitation was performed using a mouse monoclonal -assembled capsid antibody. Following immunoprecipitation, the sample was split into two, half of which was processed for Southern blot analysis (left panel) and half of which was run on an SDS-PAGE to visualize labeled MVM capsid proteins (right panel). Protein and ssDNA counts were quantitated on a phosphorimaging screen; data from a representative experiment are shown. (B) A92L cells were infected at equivalent ssDNA titers with wild-type or NS2-Crm1- virus at a wild-type MOI of 5. At 16 h postinfection, cells and media were collected, the cells were lysed in Tris-EDTA (pH 8.7) to release all associated virus, and cell-associated virus and media collected from each sample were used at equivalent volumes to infect NB324K cells. At 20 h postinfection, cells were fixed and processed for immunofluorescence using a rabbit polyclonal -NS1 primary antibody and a FITC-conjugated -rabbit secondary antibody. The number of NS1-positive cells per total cells in at least three different fields was counted and plotted on the graph.
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The Crm1 interaction mutant that we have generated can be distinguished from the NS2-null mutation. In contrast to the NS2-null mutant (18) and a number of other characterized NS2 mutants (5) which are blocked in an early step required for the production of mRF and dRF, the Crm1 interaction mutant generates mRF and dRF to wild-type levels early in infection of restrictive murine A9 and ID5 cells, but it is blocked at a later step in replication. This observation confirms the suspicion that NS2 has multiple functions and is required for both early and late steps during replication, and the Crm1- mutation abrogates only a subset of these. Since the NS2-null mutant does not generate assembled capsids in murine cells, capsid localization in restrictive cells in the absence of NS2 cannot be assessed.
The primary defect in the Crm1 interaction mutant is most likely to be capsid egress from the nucleus. The capsids produced in infection of restrictive murine cells with the mutant initially assemble normally, encapsidate DNA, and are infectious. The full virions that are produced are not transported out of the nucleus, however, and this results in a late block in the first round of infection, causing a significant reduction in the accumulation of ssDNA. The defect in ssDNA accumulation is seen within 16 h of primary infection of restrictive cells and is therefore not merely due to the absence of reinfection, which does account for the large decrease in mutant mRF, dRF, and progeny ssDNA accumulation seen later (48 h) in infection. How a failure to export assembled capsids leads to the inhibition of further ssDNA production in restrictive cells is not clear, but this observation suggests that there may be a feedback mechanism between the exit of full virions from the nucleus and either continued genome production or capsid assembly. It is well known that capsid formation and ssDNA production are intimately linked (8, 23).
It is not yet known how the NS2 interaction with Crm1 is involved in egress of assembled capsids from the nucleus. Perhaps NS2 interacts directly with full virions to facilitate their exit through a Crm1-mediated pathway. However, no direct interactions between NS2 and assembled capsids have yet been demonstrated. A more likely possibility is that the NS2-Crm1 interaction is important for the regulation of a cellular protein that is required for nuclear export of virus. It has been shown that the phosphorylation of the amino terminus of VP2 is critical for viral exit (B. Maroto and J. M. Almendral, VIIIth Parvovirus Workshop, Quebec, Canada, p. 32, 2000). Perhaps the NS2-Crm1 interaction influences the nuclear location of a kinase or phosphatase important for this modification. As expected for a Crm1-dependent process, export of assembled MVM capsids from the nucleus was blocked in the presence of leptomycin B.
It is important to note that the Crm1 interaction mutant-generated capsids also concentrate in the nucleus of permissive NB324K cells. In this case, perhaps enough capsids exit the human cell nucleus to allow the continuation of single-strand production or new capsid assembly. Alternatively, the feedback mechanism which halts single-strand production in murine cells may not be active in human NB324K cells. It is relevant to note here that NS2-null mutant-generated capsids, which are produced in NB324K cells, do not localize predominantly in the nucleus. This may suggest that the NS2-Crm1- mutation is acting in a dominant-negative fashion in this cell type.
It seems that at least at early times in infection parvoviruses can exit from cells prior to cell lysis. Little is known about how nonenveloped viruses exit from the nucleus prior to cell lysis, and parvoviruses seem to provide a valuable system to investigate this process.
Present address: Department of Microbiology and Molecular Genetics, Harvard Medical School, Boston, MA 02215. ![]()
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B
is required for RanGTP-dependent binding to CRM1. J. Biol. Chem. 276:23599-23606.
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