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Journal of Virology, March 2002, p. 2384-2392, Vol. 76, No. 5
0022-538X/02/$04.00+0 DOI: 10.1128/jvi.76.5.2384-2392.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Unité de Virologie et Immunologie Moléculaires, Institut National de la Recherche Agronomique, F-78350 Jouy-en-Josas,1 Laboratoire de Génétique des Virus, Centre National de la Recherche Scientifique, F-91198 Gif-sur-Yvette, France2
Received 23 July 2001/ Accepted 28 November 2001
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IBDV is a member of the Birnaviridae family (14). Birnaviruses are nonenveloped and contain two segments of double-stranded RNAs (A and B). The smaller segment, B, encodes the VP1 protein, which is the putative viral RNA-dependent polymerase, whereas the larger segment, A, contains two partially overlapping open reading frames. The smaller one encodes VP5, a nonstructural protein of 17 kDa (reference 16 and references therein). The larger one encodes a polyprotein precursor in the order NH2-pVP2-VP4-VP3-COOH. The polyprotein is cotranslationally processed through the proteolytic activity of VP4 to generate pVP2 (amino acids [aa] 1 to 512), VP4 (aa 513 to 755), and VP3 (aa 756 to 1012) (13, 19). pVP2 is further processed at its C terminus to become VP2, through the cleavage of at least three alanine-alanine bounds (positions 487-488, 495-496, and 501-502) (13). VP2 and VP3 form the outer and inner layers, respectively, of the virions, which contain several VP1 molecules and the genomic RNAs (1).
Preparations of purified IBDV virions were found to contain full and empty icosahedral virions and tubules with a diameter of about 60 nm (type I) or 24 to 26 nm (type II) (7). The type II tubules, which contain VP4, have also been identified in infected cells. Electron cryomicroscopy studies showed that the structure of the virion is based on a T=13 lattice formed by trimer-clustered subunits (1).
Recombinant expression of the IBDV polyprotein in heterologous cell systems has been extensively reported. Few of these studies showed the production of virus-like particles (VLPs) (5, 15). When the baculovirus-insect cell system was used to express the polyprotein, the production of VLPs was inefficient (4, 9, 11, 17, 21). Furthermore, the processing of pVP2 to VP2 was blocked (11, 17) and assembly products other than VLPs were observed, suggesting a defect in viral morphogenesis (17).
On this basis, we speculated that the charged amino acids present at the C terminus of VP3 might interfere with assembly in the absence of the viral genome. To modulate the effects of this amino acid stretch, we fused a large protein domain at its C terminus. We hypothesized that an extra protein could fit into the space occupied by VP1 and by the genome into the virions. Accordingly, we prepared a DNA construct encoding the chimeric polyprotein in which the IBDA polyprotein was fused after residue 1012 to a 7-aa long linker and the entire 238-aa green fluorescent protein (GFP). This addition promoted favorable protein arrangements, leading to the almost exclusive formation of VLPs and to processing of pVP2. The environment of the C-terminal domain of VP3 thus appears to be an important switch controlling the virus morphogenesis.
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IBDA. A NheI restriction site was placed behind the last VP3 codon in pUC-IBDA by mutagenesis using Pfu DNA polymerase with the QuickChange site-directed mutagenesis kit (Stratagene) to generate pUC-IBDANhe1. The EGFP gene was recovered from pEGFPC1 (Clontech) by restriction with NheI and KpnI. The fragment was ligated into pUC-IBDANhe1 that has been digested by NheI and KpnI, and the generated plasmid was named pUC-IBDAGFP. Then the IBDAGFP gene was recovered from pUC-IBDAGFP by restriction with EcoRI and KpnI for ligation in pFastBac1 that had been identically restricted. The recovered plasmid was then PvuI digested and self-ligated. A recombinant plasmid with a 114-base deletion upstream of the polyprotein codon was then selected by nucleotide sequencing and named pFB
IBDAGFP.
The resulting plasmids, pFBIBDAwt, pFB
IBDA, and pFB
IBDAGFP, were used to generate the recombinant baculoviruses BacIBDAwt, Bac
IBDA, and Bac
IBDAGFP, respectively. Briefly, the three pFastBac derivatives were transformed into DH10Bac competent cells which contain the bacmid. Colonies containing recombinant bacmids were identified by disruption of the lacZ
gene. High-molecular-weight mini-prep DNA was prepared from selected colonies, and this DNA was used to transfect Sf9 cells with Lipofectin. Recombinant baculovirus were prepared by standard procedures. Then high-titer viral stocks of the recombinant baculoviruses (108 PFU/ml) were prepared.
Viruses, cells, and MAbs. The Gumboral CT IBDV vaccine strain (Mérial, Lyon, France) was kindly provided by N. Eterradossi (AFSSA, Ploufragan, France). IBDV was propagated in LSCC-BK3 cells (8) provided by J. Korb (Institute of Molecular Genetics, Prague, Czech Republic). The 1C6 monoclonal antibody (MAb) specific for pVP2/VP2 was provided by J.-F. Bouquet (Mérial), and MAb 20 specific for VP3 was provided by N. Eterradossi. MAb 66 specific for VP4 was produced by immunization of mice with preparations of VP4 produced in Escherichia coli (to be reported elsewhere).
Preparation of protein assembly specimens. Sf9 cells were infected at a multiplicity of infection higher than 5 PFU/ml in the presence of the protease inhibitors leupeptin (0.5 µg/ml) and aprotinin (1 µg/ml), collected 100 h postinfection after addition of the same inhibitors at the identical concentrations, and then treated with Freon 113. Purification was carried out by density gradient centrifugation in a CsCl solution. The concentration of protein in the purified suspension was estimated by the method of Bradford using bovine serum albumin BSA as standard and UV spectrophotometry at 280 and 260 nm. From the ratio of absorbance at 260 and 280 nm, we determined that the contamination of all our samples with nucleic acid was less than 5%. As far as contamination is concerned, our preparations did not show any significant difference.
Optical microscopy. VLPs tagged with GFP were vizualized with a Nikon Eclipse fluorescence microscope using an Omega XF116 filter. Images were collected with a charge-coupled device camera. Confocal microscopy analysis was carried out using the TCS NT confocal imaging system (Leica Instruments, Heidelberg, Germany), equipped with a 63x objective (plan apo; numerical aperture = 1.4). For enhanced GFP (EGFP) and tetramethylrhodamine isocyanate, an argon-krypton ion laser adjusted to 488 or 554 nm, respectively, was used. For comparaison purpose, we used FluoSpheres carboxylate-modified microspheres, 0.1 µm in diameter (2.7 x 1013 particles/ml), red fluorescent (580/605 nm), purchased from Molecular Probes Europe BV, Leiden, The Netherlands. For microscopy examination, EGFP-VLPs or latex bead suspension (1 µl) was put on a slide. The color adjustment was done in Photoshop v3.0 (Adobe Systems).
Electron microscopy. (i) Isolated assemblies. Specimens were prepared from the appropriate CsCl gradient fractions containing the different assembled forms by desalting through Micro Bio-Spin chromatography columns (Bio-Rad) equilibrated with TN buffer. Samples of the suspensions were applied to an air-glow discharged carbon-coated grid and stained with a 2% uranyl acetate aqueous solution.
(ii) Cell in culture. Cells grown on Thermanox cover slips (Miles, Elkhart, Ind.) were fixed for 1 h with 2.5% glutaraldehyde in 100 mM phosphate buffer (pH 6). They were postfixed for 1.5 h with 1% osmium tetroxide in water. After the specimens were rinsed, they were then maintained overnight in 2% uranyl acetate aqueous solution. The samples were then embedded in Epon. Thin sections were stained with uranyl acetate in acetone and lead citrate.
Protein analysis. Sf9 cells (3 x 106) were infected (or mock infected) at a multiplicity of infection of 10 PFU per cell and maintained in 2 ml of Hinks medium supplemented with 10% fetal calf serum. At 48 h postinfection, the medium was discarded and the cells were lysed in RIPA buffer (50 mM Tris [pH 8], 150 mM NaCl, 2% Triton X-100) with a protease inhibitor cocktail (Boehringer). This material was centrifuged for 30 min at 13,000 x g. Aliquots of the supernatants were incubated for 2 h at room temperature under gentle agitation with 1 µl of ascites fluids of hybridomas and 35 µl of a 1:1 slurry of protein A-Sepharose beads (Pharmacia). The beads were washed four times with 1 ml of RIPA buffer, treated for 2 min at 100°C in Laemmli denaturating buffer plus 5% 2-mercaptoethanol, and centrifuged. The resulting supernatants were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis (10 or 12.5% polyacrylamide, 0.1% SDS), and proteins were detected by Coomassie blue staining. Protein Mr standards (Pharmacia) were used.
To reveal radiolabeled antigens by immunoprecipitation, the same procedure was carried out with some modifications. A 10-µl volume of Promix (Amersham) was added to the cell medium at 24 h postinfection for during 24 h. Polyacrylamide gels were processed for fluorography. 14C-methylated protein Mr standards (Amersham) were used.
Western blot analyses were performed using MAbs followed by appropriate secondary antibodies conjugated to alkaline phosphatase (Biosys, Compiègne, France) and nitroblue tetrazolium-5-bromo-4-chloro-3-indolylphosphate substrate.
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IBDA) were first analyzed (Fig. 1A).
Sf9 cells were infected with the recombinant viruses, and cell extracts were collected 48 h postinfection. The presence of the IBDA proteins VP3, VP4, and pVP2/VP2 was analyzed by immunoprecipitation and SDS-PAGE. Figure 1B shows that the expression levels of VP3, VP4, and pVP2 proteins were higher with Bac
IBDA than with BacIBDAwt. Therefore, part of the 5" end of IBDA upstream of the polyprotein initiation codon appeared to be deleterious for polyprotein expression. It should also be noted that pVP2 was easily detectable only with Bac
IBDA and only after immunoprecipitation of radioactive cell labeling, suggesting that pVP2 was less immunoreactive than VP3 and VP4 in this assay. Consequently, the following experiments were carried out with Bac
IBDA and additional derived baculovirus recombinants were constructed with the same 5"-end deletion. As described previously (11), Fig. 1B shows that pVP2 (48 kDa) was not further processed into the mature form of VP2. We also immunoprecipitated IBDV-infected cells with an anti-pVP2/VP2 antibody. While pVP2 is the major form, VP2 (40 kDa) is detectable, as well as VP3, which is coprecipitated, because they form the viral capsid.
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FIG. 1. IBDA polyprotein-baculovirus recombinants. (A) Map of the two constructs derived from IBDA. In BacIBDAwt, the complete IBDA segment was placed under the control of the polyhedrin promoter, whereas in Bac IBDA, part of the 5" end upstream of the polyprotein initiation codon was deleted. Numbers indicate the coordinates of P1-P"1 amino acids cleaved by the viral protease VP4, and the triangle upstream of the IBDA sequence indicates the polyhedrin promoter. (B) Immunoprecipitation analyses using an anti-VP3 antibody, an anti-VP4 antibody, and an anti-pVP2/VP2 antibody. Sf9 cells were infected by recombinant baculovirus, and LSCC-BK3 cells were infected by IBDV (right panel). +, infected cells; -, mock-infected cells. Immune complexes were analyzed by SDS-PAGE (10% polyacrylamide) under reducing conditions. The gels were stained with Coomassie blue (left panels) or fluorographed for pVP2/VP2 immunoprecipitations (right panels). The relative Mrs (shown in thousands) were determined by reference to marker proteins. HC and LC indicate the positions of the heavy and light chains of the immunoglobulins, respectively. Note the presence of a VP3 band that coimmunoprecipitated with VP2 in BK3 cells infected by IBDV, an observation consistent with the presence of viral particles inside the cells.
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IBDA-infected cells were Freon extracted and subjected to density gradient centrifugation. A single band at a density of 1.30 was observed in the gradient (Fig. 2A).
Electron microscopy observations revealed large numbers of rigid tubules (Fig. 2B) with a diameter of about 50 nm, as recently described with a baculovirus expressing the IBDA polyprotein (17). Some very rare VLPs and tubules with a diameter of 25 nm were also detected in this band (Fig. 2C). Analysis of the protein content present in the band was carried out by SDS-PAGE followed by Coomassie blue staining and by immunoblotting (Fig. 2D). After calibration with purified IBDV virions (lanes 1), the main band (48 kDa) was found to be reactive with the anti-pVP2/VP2 antibody and was identified as pVP2. Very small amounts of mature VP2 and VP3 were also detected in this preparation. Therefore, baculovirus-driven expression of the polyprotein results in the efficient assembly of rigid tubules, composed mainly of pVP2. The low efficiency of VLP assembly is not due to a possible deleterious mutation in the IBDA cDNA sequence since this DNA insert was successfully used for the recovery of infectious IBDV in reverse genetics experiments (3a).
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FIG. 2. Analysis of the structures produced by Bac IBDA. Sf9 cells were infected with Bac IBDA and treated with Freon 113 as described in Materials and Methods. (A) After on 18-h centrifugation in CsCl at 100,000 x g, the gradient was illuminated with white light and photographed. (B and C) Material collected from the band present in the gradient was negatively stained with 1% uranyl acetate. Large numbers of tubules with an apparent diameter of 52 nm (B) and some icosahedral VLPs and tubules with a diameter of 25 nm (C) were observed. (D) The left panel shows SDS-PAGE analysis and Coomassie blue staining of purified IBDV (lane 1) and of the material isolated from the band present in the CsCl gradient (lane 2). The right panels show Western blot analyses of purified IBDV (lanes 1) and of the Bac IBDA band present in the CsCl gradient (lanes 2) with an anti-pVP2/VP2 antibody or with an anti-VP3 antibody. The relative Mrs (in thousands) determined by reference to marker proteins are indicated on the left.
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pVP2 encoding the pVP2 precursor (residues 1 to 512) was engineered. Extracts of Bac
pVP2-infected cells were Freon extracted and subjected to density gradient centrifugation. A single fuzzy band was observed at a density of 1.29 (Fig. 3B). Analysis of the protein present in the band was carried out by SDS-PAGE followed by Coomassie blue staining (Fig. 3C). A unique band at 48 kDa was revealed. Western blot analysis revealed this band to be the pVP2 protein and a probable minor degradation product. Electron microscopy observation showed rather isometric particles with a diameter of about 30 nm (Fig. 3D). Very few flexible tubules were also identified in these preparations, but we failed to identify rigid tubules as were observed when the IBDA polyprotein was expressed. Therefore, we concluded that assembly of pVP2 into rigid tubules when expressed as part of the IBDA polyprotein is probably controlled by the presence of the capsid protein VP3 or possibly by the VP4 protease.
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FIG. 3. Analysis of the structures produced by Bac pVP2. (A) Map of the construct encoding pVP2. Sf9 cells were infected with Bac pVP2 and treated with Freon 113 as described in Materials and Methods. (B) After an 18-h centrifugation in CsCl at 100,000 x g, the gradient was illuminated with white light and photographed. (C) The left panel shows SDS-PAGE analysis and Coomassie blue staining of the material isolated from the fuzzy band present in the CsCl gradient. The right panel shows a Western blot analysis with an anti-pVP2/VP2 antibody. (D) Material collected from the band present in the gradient was negatively stained with 1% uranyl acetate. Large numbers of small capsids and some flexible tubes were vizualized.
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IBDA-GFP, encoding the complete IBDA polyprotein fused at its C terminus with a 7-aa linker and the entire 238-aa EGFP (Fig. 4A).
EGFP was used because proper folding is required for its fluorescence activity, which would facilitate the detection of the structures associated with VP3.
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FIG. 4. Expression of the fusion polyprotein IBDA-GFP in insect cells. (A) Schematic representation of the construct expressing the IBDA polyprotein fused at its C terminus with EGFP. A 7-aa linker was added between the two partners, and its sequence is reported using the single-letter code. (B) Expression of the fusion polyprotein IBDA-GFP in insect cells analyzed by immunoprecipitation with specific antibodies and by SDS-PAGE. Sf9 cells were infected with BacIBDA-GFP, and LSCC-BK3 cells were infected by IBDV (right panel). +, infected cells; -, mock-infected cells. Immune complexes were analyzed by SDS-PAGE (10% polyacrylamide) under reducing conditions. HC and LC indicate the positions of the heavy and light chains of the immunoglobulins, respectively. The gels were stained with Coomassie blue (left panels) or fluorographed for pVP2/VP2 immunoprecipitation (right panels). The relative Mrs (in thousands) were determined by reference to marker proteins, and positions of the molecular weight markers are indicated on the left. (C) Visualization of IBDA-GFP expression in Sf9-infected cells. The cells were examined under a optical microscope with UV light excitation 48 h postinfection. The left panel shows mock-infected cells, and the right panel shows infected cells.
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IBDA-GFP-infected Sf9 cell extracts were carried out for SDS-PAGE analysis and Coomassie blue staining (Fig. 4B). A band with an apparent molecular mass of 64 kDa, corresponding to the expected size for the chimeric VP3-GFP fusion protein, was reactive with both the anti-VP3 and anti-GFP antibodies. The levels of expression of VP3-GFP, pVP2, and VP4 were comparable to those of VP3, pVP2, and VP4 expressed with Bac
IBDA. Note that in contrast to what was observed in IBDV-infected cells, mature VP2 and VP3 were not detectable by this assay in Bac
IBDA-GFP-infected cells. Direct fluorescence analysis of Sf9 cells infected with
IBDA-GFP showed a strong labeling of cells, suggesting that the GFP was correctly folded (Fig. 4C). Therefore, all the components of the fusion protein, pVP2, VP4, and VP3-GFP, appeared to be well expressed.
Efficient assembly of IBDA-GFP into VLPs and maturation of pVP2 to VP2 on VLPs.
To analyze the type of assembly driven by the chimeric molecule IBDA-GFP, we expressed the molecule and subjected it to Freon extraction and density gradient centrifugation. In parallel, IBDV was purified using the same procedure, except for the gradient density, which was assigned at 1.33. As shown in Fig. 5A,
a fluorescent band was revealed by illumination with both white and UV light with Bac
IBDA-GFP. The IBDV bands, corresponding to viruses containing different amounts of genomic material (3a), were not visible under UV light (data not shown). Electron microscopy of negatively stained preparations revealed the presence of large numbers of VLPs with a diameter of about 60 nm, looking similar to viral particules. Most VLPs appeared as full particles, suggesting that the VP3-fused GFP resides inside the particles. Very small numbers of 50-nm-diameter tubules were also identified. To confirm the assembly of pVP2/VP2 and VP3-GFP into the VLPs, the protein composition of the
IBDA-GFP band was investigated by SDS-PAGE followed by Coomassie blue staining or Western blot analysis using MAbs specific for GFP, VP3, and pVP2/VP2. Figure 5B shows that the VLPs contain the VP3-GFP fusion, pVP2, and the mature form of VP2. In contrast to previous results, the VP2 mature form was the major pVP2/VP2 species associated with VLPs. These results indicate that the final conversion of pVP2 to VP2 occurred efficiently during VLP assembly.
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FIG. 5. Analyses of the structures expressed by Bac IBDA-GFP. (A) Sf9 and LSCC-BK3 cells were infected with Bac IBDA-GFP (left) and IBDV (right), respectively, for treatment with Freon 113 as described in Materials and Methods. A gradient with a CsCl density of 1.30 or 1.33 was used for purification of structures produced by Bac IBDA-GFP and IBDV, respectively. The gradients were illuminated with white light and photographed. Material collected from the bands present in the gradients was negatively stained with 1% uranyl acetate. For the IBDV gradient, the heavier band was selected for electron microscopy. The insets show VLP-GFP and virions at a higher magnification. (B) Polypeptide identification. The left panel shows SDS-PAGE analysis and Coomassie blue staining of purified IBDV (lane 1) and of the material isolated from the Bac IBDA-GFP band present in the CsCl gradient (lane 2). The right panels show Western blot analysis of purified IBDV (lanes 1) and of the material present in the Bac IBDA-GFP sample (lanes 2) with an anti-pVP2/VP2, an anti-VP3, and an anti-GFP antibody. The relative Mrs (in thousands) determined by reference to marker proteins are indicated on the left.
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FIG. 6. Visualization of individual fluorescent VLPs (A and B) A1-µl volume of purified VLPs was directly examined under a optical microscope (A) or mixed with red-fluorescent latex beads and examined under a confocal microscope (B). (C) VLPs were examined, after addition of an anti-VP2 antibody under a confocal microscope.
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FIG. 7. Micrographs of thin sections of Sf9 cells infected by different recombinant baculoviruses. (A) The polyhedrin-negative baculovirus. Baculoviruses are assembled in the nucleus (b). In the cytoplasm, the main consequence of the baculovirus infection is the accumulation of inclusions with a more or less regular shape (I). (B) Bac IBDA; (C) Bac IBDA-GFP; (D) Bac pVP2. The characteristic structures formed by the polyprotein-derived constructs are inserted in the corresponding micrographs: 50-nm-diameter tubules (T), VLPs (V), and isometric particles often associated with membranes (p). Tubules are occasionally observed in cells infected with Bac IBDA-GFP (data not shown). Small numbers of isometric particles are also identified in cells infected by Bac IBDA and Bac IBDA-GFP, suggesting that pVP2 may self-assemble in all cases. Magnifications are identical in all micrographs and inserts.
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FIG. 8. Model for the assembly of VLPs (A), virions (B), and tubules (C). We hypothesized that the VP3 protein has two different conformations in thermodynamic equilibrium: a relaxed state (pink) and an activated one (red). Only the activated VP3 is supposed to self-assemble. Quaternary interactions involving VP3 and GFP (A) or VP3 and genomic RNA-VP1 (B) shift the equilibrium toward the activated form, favoring the spontaneous assembly of VP3 subviral particles. The proteolytic maturation of pVP2 into VP2 requires interaction with assembled VP3. When the equilibrium is not shifted, the activated VP3 forms nuclei only for the polymerization of pVP2 into tubules (C). The existence of the VP3 nuclei for the polymerization of pVP2 has been proposed by Martinez-Torrecuadrada et al. (17) and agrees with the fact that pVP2 alone self-assembles not into tubules but into isometric particles.
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IBDA Sf9-infected cells (normally grown at pH 6.3) were grown in a medium buffered at pH 7.3 for protein assembly analysis. Expression of the wild-type polyprotein leads to the formation of large numbers of pVP2 tubules and a few VLPs (data not shown). Therefore, we did not induce morphological changes by increasing the extracellular pH. We did not measure the value of the intracellular pH. We therefore cannot ruled out the possibility that the capsid assembly is not pH independent. Understanding the differences between the expression systems calls for further studies. These results have additional consequences. Since large proteins such as GFP can be well processed and packaged into chimeric birnavirus VLPs, we postulate that VLPs could be used for cell-specific delivery of drugs. IBDV VLP carriers present two major advantages: encapsidation of the drug and specific targeting. Chimeric VLPs could be used as vaccine carriers for natively displayed proteins. It is likely that strong antibody responses can be evoked against native protein antigens, similar to what was observed when GFP was fused to capsid proteins of hepatitis B virus or rotavirus (2, 12).
A perspective for structural studies is that proteins fused inside IBDV VLPs might become amenable for high-resolution cryoelectron microscopy analyses. This possibility was also investigated for hepatitis B virus VLP with a GFP protein on the outside of the capsid (12). In this case, the GFP insert flanked on both sides by Gly-rich inserts was inserted at the tips of the surface spikes. GFP was clearly visible in the cryoelectron micrographs, but the three-dimensional reconstruction revealed a partially ordered structure. In this respect, a possible interest of the IBDV chimeric VLPs is that the foreign protein should be more rigidly fixed inside the particles since it would trigger VLP assembly. Concerning specific applications of the GFP-VLPs, they might be used to correlate cell IBDV permissivity and virus binding and also to trace subsequent steps of virus infection.
In conclusion, we demonstrated that addition of a protein to the inner VP3 capsid protein of IBDV triggered VLP assembly in a recombinant expression system. A strong correlation between the efficient VLP formation and the maturation of pVP2 and VP2 was demonstrated, suggesting that pVP2-to-VP2 cleavage is driven by initial preassembly of pVP2 into premature virions. This work opens the possibility of developing new vectors by producing chimeric VLPs. Attractive foreign candidates would be protein antigens implicated in immune protection against important microorganisms.
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