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Journal of Virology, February 2002, p. 1691-1696, Vol. 76, No. 4
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.76.4.1691-1696.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Veterinary Public Health, Faculty of Agriculture, Gifu University, Gifu 501-1193 ,1 Animal Laboratory Center, Oita Medical University, Oita 879-5593, Japan2
Received 20 September 2001/ Accepted 15 November 2001
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The surface glycoproteins mediate virus attachment and penetration to host cells and play a vital role in induction of protective immunity. Although the F protein can be the target of neutralizing antibodies (13), most of the protective immunity to MV is directed against the H protein (4). Similarly, the neutralizing antibodies have been induced with much higher titers in cattle by immunization with vaccinia virus recombinant encoding the H protein of RPV (RPV-H) than with that encoding the F protein (21). The B-cell epitopes on the H protein of MV (MV-H) have been analyzed by several groups by using monoclonal antibodies (MAbs) and synthetic peptides. These studies have revealed that seven neutralizing antigenic sites are mapped on MV-H (3, 5, 7, 10-12, 22). However, the immunodominant neutralizing epitope on H protein remains unclear, while a major antigenic epitope, recognized by acute postinfection human sera, has been identified using synthetic peptides of MV-F protein (1). It is generally difficult to apply peptide scanning to identify the conformational epitopes because it has led to the identification of mainly linear epitopes. A previous study using competitive binding assays with MAbs has shown that the neutralizing epitopes on RPV-H are predominantly dependent on a conformational structure and that at least seven neutralizing antigenic sites are located on it (16).
In this study, we used a panel of neutralizing MAbs against RPV-H (16) to select a series of escape mutants. We determined the sequence of the H gene of each mutant to map the neutralizing epitopes of RPV-H. In the case of RPV, the rabbit, which shows symptoms similar to those seen in natural hosts when infected, provides an ideal small-animal model (8, 20). Finally, the immunogenicity of each epitope was assessed by the competitive enzyme-linked immunosorbent assay (c-ELISA) with MAbs in rabbits immunized with RPV.
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Production of MR mutants. Vero cells infected with a wild-type L strain were cultured in a 24-well plate in growth medium containing 10% mouse ascites fluid of each MAb and passaged until the monolayer showed a cytopathic effect caused by MR mutants. When about 80% of an RPV-infected Vero cell monolayer showed cytopathic change, the culture supernatant was collected. The MR mutants in this culture supernatant were cloned by plaque formation as described previously (15). The reactivities of these clones to 19 MAbs against RPV-H were investigated by immunofluorescent antibody (IFA) tests as described previously (15).
Sequence determination of H genes from wild-type and MR RPV mutants. To sequence H genes of wild-type and MR mutants, total RNA was prepared from Vero cells infected with each mutant with Isogen (Nippon Gene, Tokyo, Japan) according to the instructions of the supplier. cDNA was synthesized from total RNA using Ready-To-Go You-Prime First-Strand beads (Amersham Pharmacia Biotech, Little Chalfont, United Kingdom) and the primer URP1 (5"-CGACGTTGTAAAACGACGGCCAGTAGGATGCAAGATCATCCACC-3"), which has an additional M13 universal sequence for sequencing (underlined). Three overlapped fragments covering the whole RPV-H gene were amplified by PCR on the cDNA template using the following three sets of primers: upstream URP1 and downstream RRP1, 5"-TTTCACACAGGAAACAGCTATGACCTGAAATATTGTAGCCACGACC-3", which has an additional M13 reversal sequence for sequencing (double underlined); upstream URP2, 5"-CGACGTTGTAAAACGACGGCCAGTAAGGTCAATTCTCTAACATGTC-3", and downstream RRP2, 5"-TTTCACACAGGAAACAGCTATGACCGAGGAATAGTCAGCCAGTAC-3"; and upstream URP3, 5"-CGACGTTGTAAAACGACGGCCAGTACTCAGGGATGGACTTATACA-3", and downstream RRP3, 5"-TTTCACACAGGAAACAGCTATGACCTGCAGCGCGGTGCCTGG-3". After the primers had been removed from PCR products by ultrafiltration (Suprec-02; Takara, Shiga, Japan), the nucleotide sequence of the resulting cDNA was determined by the thermal cycle sequencing method with an AutoCycle Sequencing kit and an ALFred DNA sequencer (Amersham Pharmacia Biotech). Four Cy5-labeled primers, 5"-GCTCGGTGGAGTCTGATACC-3", 5"-TAACTGGTGCATCAGTCCCC-3", 5"-CCACTCTTTCAGCAGTAGATCC-3", and 5"-TGATGGGGAGAGTAAGGATGTTAGG-3", were also used to confirm the ambiguous sequences of RPV-H genes. Sequences were analyzed using Genetyx software for the Macintosh, version 6.0.1.
Immunization of RPV in rabbits and sampling. Five male New Zealand White rabbits (Japan SLC, Shizuoka, Japan) with an average body weight of 2.0 kg were intravenously inoculated with a 50% tissue culture infective dose of 104 of the L strain at the 39th passage in Vero cells. Sera were collected intravenously from rabbits 4 weeks after inoculation. The serum samples were stored at -20°C until use.
c-ELISA. c-ELISA was performed essentially as described previously (18). Briefly, the RPV-infected NA cell lysate with a lysis buffer containing 20 mM 3-[(3-cholamidopropyl)-dimethylammonio]-1-propanesulfonate (CHAPS)(Dojin-kagaku, Kumamoto, Japan) was clarified by centrifugation. The crude extract was used as an antigen for c-ELISA. The MAbs were purified and biotinylated as described previously (16). Each well of a 96-well microtiter plate was coated with the antigen at 4°C overnight and treated with 5% skimmed milk at 37°C for 1 h to block the nonspecific reaction. A series of twofold dilutions of rabbit sera was put in the antigen-coated wells and incubated at 37°C for 1 h. After being washed five times with phosphate-buffered saline containing 0.05% Tween 20, the assay was followed by appropriate dilutions of biotinylated anti-H MAbs 50 (to epitope group A), 30 (to B), 59 (to D), 47 (to E), 31 (to G), and E-1 (to H) using a VECTASTAIN Elite ABC kit (Vector Laboratories, Burlingame, Calif.). After the reaction mixture had been visualized with o-phenylenediamine and the reaction was stopped with H2SO4, the resulting optical density at 490 nm was measured with an ELISA reader (Bio-Rad, Hercules, Calif.). The serum titer was defined as the reciprocal of the highest serum dilution that reduced the specific absorbency by more than 50%.
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The pattern of reactivity of MR mutants to MAbs in the IFA test indicates that there are eight individual epitopes (A to H) on RPV-H (Table 1). These epitopes are basically in accordance with those (antigenic sites I to VII) determined by the competitive binding assay described previously (16). Although MAbs S-1 (to antigenic site II) and 20 (to IV) reacted to all of these mutants, MAbs B-1 and 80 did not react to the MAb 41-resistant mutant (MR 41) in the epitope F group and to four mutants in the epitope H group, respectively. The reactivity of MAbs was nonreciprocal between the mutant clones in the same epitope E and G groups.
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TABLE 1. Reactivities of anti-H MAbs to MR clones in IFA testsa
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TABLE 2. Predicted coding changes in the H proteins of MR clones compared with the H protein of their progenitor, strain L
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FIG. 1. Relationships of diversity of amino acid sequences among morbilliviruses to positions associated with amino acid changes in MR mutants and conservation of those epitopes. (A) Deduced amino acid sequence alignment of the wild-type L strain, MR mutants, and other morbilliviruses. Dots indicate positions of sequence identity with the wild-type L strain. Sequences for comparison with L strains were from the following sources (GenBank accession number): LA (D82982), RBOK (Z30699), MV, Edmonston strain (K01711), and CDV, Onderstepoort strain (D00758). (B) Reactivities of MAbs to those viruses in IFA tests (16). Results of IFA tests are shown as the following ascitic fluid dilution endpoints: ++, 1:1000; +, <1:1000 to 1:100; -, <1;100.
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In the epitope G group, MR 71 showed the substitutions Tyr-310-His and Leu-313-Ser, while MR 31 showed the Gly-312-Arg substitution. The sequence around those substitutions was conserved between the L and LA strains, while it was varied between the L and RBOK strains. MAbs 71 and 31, used for selection of those MR mutants, reacted to the LA strain but not to the RBOK strain. The results of the alignment analysis are in accordance with those of reactivities of MAbs. Therefore, epitope G was identified on aa 310 to 313 of RPV-H.
The same substitution, Arg-387-Gln, appeared in MRs E-1, 32, and 39; a single substitution, Arg-383-Gln, appeared in MR 61. It has been shown that the reactive pattern of MAb 61 to the LA strain was different from that of the other MAbs to epitope H; namely, MAb 61 failed to react to the LA strain, but MAbs E-1, 32, and 39 reacted to it weakly. These results indicated that a single substitution in MR 61, Arg-383-Gln, caused a dramatic alteration of the epitope H structure, while the substitution Arg-383-Leu in the LA strain caused mild alteration. Since another substitution, Phe-96-Val, was observed only with MR 39 of these mutants, this substitution seemed to be ineffective for construction of epitope H. Epitope H was mapped on aa 383 to 387.
Epitopes A, B, and E were mapped at 474-Pro, 243-Arg, and residues 587 to 592, respectively, since the antigenic characterization of MR mutants and wild-type L, LA, and RBOK strains using MAbs against A, B, and E agrees with sequencing analysis of those strains around each substitution caused by those MAbs (data not shown).
A single amino acid change, Lys-556-Glu, was observed in the MR 41 clone. MAb 41 has been shown to react across a range of morbilliviruses (16), suggesting that the epitope against MAb 41 will be in a conserved region. However, the amino acid corresponding to this position (aa 556) was Arg, not Lys, in both MV and CDV strains. Moreover, this position was hydrophobic, while the other predicted epitope regions, A, B, D, E, G, and H, were hydrophilic (Fig. 2A). Based on this evidence, we assume that the region at aa 556 is not an epitope for MAb 41, although this position is important for the structure of epitope F.
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FIG. 2. The predicted positions of neutralizing epitopes on the H protein of L strain by hydropathy plots (A) and comparison of c-ELISA titers in five rabbits infected with RPV (B). The relative hydropathic index was calculated by the method of Chou and Fasman (2). Sera collected from five rabbits 4 weeks after infection with RPV were tested by c-ELISA with biotinylated anti-H MAbs 50 (to epitope group A), 30 (to B), 59 (to D), 47 (to E), 31 (to G), or E-1 (to H) as competitors. The serum titer was defined as the reciprocal of the highest serum dilution that reduced the specific absorbency by more than 50%. Columns indicate the titers of the individual rabbit samples. Results shown are representative of two experiments.
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MV was estimated to have a mutation rate of 9 x 10-5 per base per replication and a genomic mutation rate of 1.43 per replication (14). It has also been shown that MR mutants were present in the stock at a rate of approximately 1 per 3,000 PFU (14). Since the titer of the RPV stock used in this study was too low (104 PFU/ml) to obtain MR mutants from it, we attempted to select resistant mutants during the serial culture of RPV-infected cells under the pressure of each MAb. Finally, 15 kinds of MR mutants were established, and no mutants were generated by using four MAbs (B-1, 80, S-1, and 20). Although two MAbs, B-1 and 80, failed to react to these mutants in epitope F and H groups, respectively, the remaining MAbs, S-1 and 20, reacted to all MR mutants (Table 1). These results show that MAbs B-1 and 80 recognize epitopes F and H, respectively, and that MAbs S-1 and 20 recognize epitopes distinct from those that have been identified in this study.
A three-dimensional (3D) structure model of morbillivirus H protein has been proposed on the basis of homology modeling using crystal structures of neuraminidases of influenza viruses A and B, Salmonella enterica serovar Typhimurium LT2, and Vibrio cholerae (9). The model is a superbarrel comprising six similarly folded antiparallel ß-sheets of four strands each. In the superbarrel, the six sheets (ß1 to -6) are arranged cyclically around an axis through the center of the molecule like the blades of a propeller (Fig. 3B). Loop structures, designated L01, L12, L23, and L34, exist between strands 4 and 1, 1 and 2, 2 and 3, and 3 and 4, respectively, on each ß sheet. Loops L01 and L23 protrude from the top surface, and loops L12 and L34 are on the bottom surface. All of the six neutralizing epitopes identified in this study are positioned on the loop of each propeller-like structure. Our results reveal that epitopes B, G, H, A, and D are located on ß1L23, ß2L23, ß3L23, ß5L01, and ß6L01 on the top surface of the propeller-like structure, respectively, while epitope E is located on ß6L34 on the bottom surface. Hu et al. (6) demonstrated that carbohydrate side chains have a great effect on the antigenicity of MV-H. For RPV, three potential glycosylation sites are located on the postulated stem 2 region, and one potential glycosylation site is located on loop ß3L23. Although epitope H is located near this glycosylation site on ß3L23, there was no alteration in the potential glycosylation of any of the MR mutants in this study (Fig. 3A).
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FIG. 3. Locations of the neutralizing epitopes of RPV-H in a schematic illustration (A) and in the 3D structure model proposed by Langedijk et al. (9) (B). Stars indicate the predicted N-linked glycosylation sites. The six sheets in the ß-propeller structure are shown as rectangles. Stem and transmembrane (TM) regions and the direction of the polypeptide chain (arrows) are indicated.
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The epitopes B on ß1L23 and A on ß5L01 may be minor antigenic sites for induction of the neutralizing antibody to RPV because few of the RPV-infected rabbits had antibodies against these epitopes (Fig. 2B). However, both antigenic sites of MV-H were determined by some investigators. Fournier et al. (3) demonstrated a linear neutralizing epitope, aa 244 to 250, on MV-H from the reactivity of MAbs to a synthetic peptide, while we identified the conformational epitope B at aa 243 next to this sequence on the same ß1L23 of RPV. Although MAb 50 to epitope A at aa 474 showed a neutralizing antibody titer of less than 100 (16), it exhibited inhibition of the cytopathic effect by the wild-type L strain in a high concentration (10%) of MAb 50-rich ascitic fluid by blocking the spread of the virus from cell to cell. In the same ß5L01, it has been reported that the domain between aa 451 and 505 of MV-H seems to be the antigenic site required for neutralization, hemadsorption, and hemagglutination activities based on the reactivities of MAbs and chimeric MV-H (12). Also, neutralizing antigenic site II was determined at aa 491 by sequencing a MAb-selected MR mutant (5).
The antibodies to epitopes G on ß2L23 and D on ß6L01 were moderately detectable in RPV-infected rabbit sera, with geometric means of their c-ELISA titers of 12.1 and 8.0, respectively. On epitope G at aa 310 to 313 of ß2L23, aa 313 and 314 have been mapped as neutralizing site I by analysis of selected MR mutants (5). This epitope was also identified by peptide-binding studies (aa 309 to 318) (11, 12). We determined epitope D at aa 548 to 551 next to neutralizing site III mapped on aa 552 by sequencing an MR mutant gene (5).
In the present study, we identified two major neutralizing epitopes, epitope H at aa 383 to 387 and epitope E at aa 587 to 592 on RPV-H. The isolation rates of hybridomas secreting MAbs against these epitopes were higher than those against the other epitopes, since we established four MAbs (1d, 53, 19, and 47) that recognized epitope H and five MAbs (E-1, 32, 39, 61, and 80) that recognized epitope E (16). The isolation rate of hybridomas may reflect the immunogenicity of the antigenic sites. Epitope E near the C terminus of RPV-H is located on the same epitope (aa 587 to 596) of MV-H, which has been previously identified from data on reactivity of a synthetic peptide and MAb (11). According to Liebert et al. (10), the major antigenic site of MV-H is located between residues 368 and 396, which corresponds exactly to the large insertion at ß3L23. It has also been reported that a small cysteine cluster region (Cys-381, Cys-386, and Cys-394) at ß3L23 of MV was identified as a linear neutralizing and protective epitope (22). We identified the most immunodominant epitope, epitope H at aa 383 to 387, on the same loop in RPV. These results suggest that the loop structure ß3L23 formed by disulfide bonds between two ß-sheets is a major neutralizing antigenic site in morbilliviruses.
These results indicate that the overall antigenic structures of the H protein in morbilliviruses are similar. Our data also support the hypothetical 3D model of the H protein of morbillivirus (9). In this study, we identified six neutralizing epitopes which are exposed on the surface of the distinct loop structures of RPV-H. Moreover, we demonstrated that two of six epitopes are immunodominant for the induction of neutralizing antibodies in RPV-infected rabbits.
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