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Journal of Virology, December 2002, p. 12312-12319, Vol. 76, No. 23
0022-538X/02/$04.00+0 DOI: 10.1128/JVI.76.23.12312-12319.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Biological Sciences,1 Institute of Molecular Agrobiology, The National University of Singapore, Singapore 117604, Republic of Singapore,2 Department of Plant Pathology, University of California, Riverside, California 925213
Received 21 May 2002/ Accepted 3 September 2002
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FIG. 1. Schematic representation of HCRSV p23 mutants. Mutations were introduced into the full-length cDNA clone p223 (A). The point mutants of p23 were: M23/1T, nucleotide 41 (ATG ACG), start codon Thr(B); M23/S33-1, nucleotide 138 (TCG TAG), amino acid 33 Ser stop codon (C); M23/S150-1, nucleotide 489 (TCA TAA), amino acid 150 Ser stop codon (D).
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(ii) pCam23 for replication complementation studies. The p23 ORF with terminal SacI sites (underlined) was amplified by PCR by using Vent polymerase (New England Biolabs) with primers 3 (5'-CGAGCTCATGCTTTCTCAATTGCTTTCG-3') and 4 (5'-CGAGCTCTCACGGGCGAGTACCCCTG-3'). The amplified fragment was inserted into SacI-cut pCass3 (31) to generate pCass23. Plasmid pCam23 was constructed by introducing the PvuII fragment from pCass23 into the binary vector pCAMBIA1300 (p1300) (kindly provided by R. A. Jefferson, CAMBIA [Australia]) digested with EcoRI/SmaI. The EcoRI site was blunt ended by treatment with Klenow fragment.
(iii) pCass23GFP for the p23 localization studies. By using the infectious clone p223 as a template and primers 5 (5'-GCTCTAGAATGCTTTCTCAATTGCTTTCG-3') and 6 (5'-CATGCCATGGCGGGCGAGTACCCCTG-3'), XbaI and NcoI sites (underlined) were introduced by PCR into the 5' and 3' ends of the p23 coding region, respectively. The amplified p23 fragment was then inserted into the XbaI- and NcoI-digested green fluorescent protein (GFP) construct pCassGFP (31), resulting in the fusion protein expression construct, pCass23GFP. Nucleotide sequences of all cloned inserts were verified by DNA sequencing after construction.
p23-CBP fusion protein expression, purification and antibody production. The p23 ORF was expressed as a CBP-tagged fusion protein by using the Affinity Protein Expression System (Stratagene) according to the manufacturer's instructions. Cultures of E. coli BL21(DE3)plys (Stratagene) carrying pCAL-c23CBP were grown at 37°C in Luria-Bertani medium containing 100 µg of ampicillin and 34 µg of chloramphenicol ml-1. When the optical density at 600 nm had reached 0.6, the culture was induced with 0.5 mM IPTG (isopropyl-ß-D-thiogalactopyranoside) and reincubated for 4 h at 37°C. Bacteria expressing p23-CBP were harvested by centrifugation and resuspended in CaCl2 binding buffer (50 mM Tris-HCl, pH 8; 150 mM NaCl; 10 mM ß-mercaptoethanol; 1 mM magnesium acetate; 1 mM imidazole; 2 mM CaCl2). After three cycles of freezing and thawing with liquid nitrogen, 9 volumes of solubilization buffer (50 mM KH2PO4, pH 10.7; 1 mM EDTA; 50 mM NaCl) were added and the suspension was incubated for 30 min at room temperature. The mixture was subsequently adjusted to pH 8 and incubated for a further 40 min at room temperature. After centrifugation at 14,000 x g for 15 min, the supernatant was loaded onto an equilibrated calmodulin affinity resin column. The proteins were released from the column matrix by adding elution buffer (50 mM Tris-HCl, pH 8; 10 mM ß-mercaptoethanol; 2 mM EGTA; 150 mM NaCl) and analyzed by 18% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The fractions containing purified p23-CBP protein were pooled (to yield 0.7 mg of protein) and emulsified with an equal volume of complete Freunds adjuvant (Sigma) for direct intramuscular injection into a rabbit. Four booster injections of p23-CBP protein (0.7 mg each) with incomplete Freunds adjuvant were subsequently given at 2-week internals, and antisera were collected after each injection.
Detection of p23 in kenaf protoplasts and plant tissues. Kenaf (Hibiscus cannabinus L.) protoplasts (4 x 105) were inoculated with in vitro transcripts of p223 (tp223), using a polyethylene glycol-mediated method described previously (26). Mock (i.e., without viral transcripts) and HCRSV-transfected protoplasts were collected by centrifugation at 100 x g for 10 min at 0, 12, 24, and 36 h postinoculation (h p.i.). The pellets were resuspended in lysis buffer (0.5 mM dithiothreitol, 4 mM phenylmethylsulfonyl fluoride, 8 M urea, 1% Triton-100, 5% SDS, 20 mM HEPES-KOH [pH 7.6], 150 mM NaCl) and centrifuged at 700 x g for 5 min. The supernatant was then collected, and an equal volume of 2x Laemmli sample buffer (250 mM Tris-HCl [pH 6.8], 8% SDS, 40% glycerol, 0.01% bromphenol blue dye, 200 mM ß-mercaptoethanol) was added. Mock-inoculated or HCRSV-infected kenaf leaves (1 g) were ground in 5 ml of CaCl2 binding buffer, the suspension was centrifuged at 4,000 x g for 10 min, and the pellet was washed with the same buffer twice before resuspension in 5 ml of lysis buffer and subjection to two freeze-thaw cycles. After centrifugation at 4,000 x g for 10 min, total proteins were precipitated with 5 ml of acetone and resuspended in 1x Laemmli sample buffer. These protoplast and leaf samples were subsequently analyzed by Western blots.
Western blots. Protein extracts from kenaf protoplasts and leaves were subjected to SDS-18% PAGE. Proteins were transferred to a 0.2-µm (pore-size) positively charged polyvinylidene difluoride nylon membrane (Boehringer Mannheim) and blocked by immersion in 5% skimmed milk for 1 h at room temperature. The blot was then washed three times (10 min for each wash) at room temperature with Tris-buffered saline (TBS; 20 mM Tris-HCl [pH 7.5], 500 mM NaCl) containing 0.5% Tween 20. The blot was subsequently incubated with p23-CBP polyclonal antiserum (1:500) in TBS for 1 h at room temperature and washed three times (10 min each) in TBS containing 0.2% Tween 20 prior to incubation in horseradish peroxidase-conjugated goat anti-rabbit immunoglobulin G (Sigma) diluted 1:10,000 in TBS (40 min at room temperature). The enhanced chemiluminescence detection system (Amersham Pharmacia Biotech) was used according to the manufacturer's instructions prior to exposing the blot to X-ray film for 1 min at room temperature.
Whole-leaf immunoblots. A protocol previously described for immunohistochemistry of tissue sections (30) was adapted to detect HCRSV p23 in situ in whole leaves. Briefly, either mock- or HCRSV-inoculated leaves were fixed in acid formaldehyde (FAA; 5% formaldehyde, 5% glacial acetic acid, 45% methanol) at 4°C overnight. The leaves were then dehydrated with a series of increasing concentrations of ethanol, cleared in Histolene (Sigma), and rehydrated through decreasing concentrations of ethanol. Fixed, cleared, and rehydrated leaves were then directly subjected to immunohistochemical detection by using antisera to p23-CBP. Leaves incubated with HCRSV CP antisera were used as controls.
Transient expression and localization of p23 in kenaf leaves. The pCass23GFP construct was used for transient expression in kenaf leaves. Bombardments were performed by using the PDS-1000/He Biolistic Particle Delivery System (Bio-Rad Laboratories) based on previously described methods (31, 36). Briefly, expanded kenaf leaves were excised and placed on prewetted 3MM Whatman filter paper in a petri dish. Five milligrams of 1-µm-diameter gold particles, coated with 5 µg of the DNA construct, were used to biolistically bombard the leaves at 1,100 lb/in2. Bombarded leaves were subsequently incubated in a darkened high humidity chamber at room temperature. At 6, 12, 30, 48, 56, and 72 h p.i., the bombarded leaves were examined under blue-light excitation (489 nm) with an epifluorescence microscope (Nikon E800 M). A total of five replicates were carried out for each time point tested.
Construction of p23 mutants.
Three point mutants were constructed without changing the amino acid sequence of the p23-overlapping ORF for p28. For M23/1T, the initiation codon (ATG) of p23 was changed to ACG (Thr) by the PCR mutagenesis method used by Ding et al. (11). Two other mutants, M23/S33-1 and M23/S150-1, were similarly constructed such that nucleotide substitutions were made at positions 138 (TCG
TAG) or 489 (TCA
TAA) to introduce premature translational stops in the amino acid sequence at residues 33 or 150, respectively (Fig. 1B to D). Uncapped in vitro transcripts were synthesized from SmaI-linearized p223 or the mutant constructs by using T7 RNA polymerase (Promega). The transcripts were used to inoculate kenaf and C. quinoa protoplasts and leaves according to protocols described previously (18, 26).
Analysis of p23 mutants in protoplasts and leaves. To extract total RNA from plants, mock- or p23 mutant-inoculated leaves (0.5 g) were ground in liquid nitrogen and transferred to 2-ml microtubes containing 1 ml of prewarmed 80°C phenol extraction buffer (0.1 M LiCl, 0.1 M Tris-HCl [pH 8], 10 mM EDTA, 1% SDS, 50% buffer-saturated phenol). The suspension was mixed with 500 µl of chloroform and, after thorough mixing, centrifuged for 5 min at room temperature. The supernatant was precipitated with an equal volume of 4 M LiCl at -20°C overnight. After centrifugation, the pellet was resuspended in 990 µl of suspension buffer (300 µl of Tris-EDTA [pH 7.5], 30 µl of 3 M sodium acetate [pH 5.2], 660 µl of 95% ethanol) and incubated for 20 min at -20°C. After centrifugation for 10 min at 4°C, RNA was resuspended in 50 µl of Tris-EDTA. C. quinoa protoplasts were isolated as described by Hans et al. (18). A digoxigenin (DIG)-labeled cRNA probe corresponding to the 3' 0.8 kb of the HCRSV genome was generated from PstI-linearized p223 by using the T7 DIG RNA labeling kit (Boehringer Mannheim). For Northern blot analyses, equal amounts (5 µg) of total RNA were loaded for all samples.
Replication complementation between the p23 mutant M23/S33-1 and pCam23. Kenaf plants with three pairs of leaves were infiltrated with Agrobacterium tumefaciens EHA105 carrying pCam23. Plants infiltrated with an empty vector (p1300) were used as negative controls. Subsequently, in vitro transcripts of M23/S33-1 (tM23/S33-1) were used to inoculate the infiltrated leaves. At 2, 7, and 14 days p.i., total RNA was extracted and subjected to reverse transcription-PCR (RT-PCR) and Northern blot analyses.
Testing for p23 nucleic acid-binding activity. For radioactive RNA labeling, [32P]UTP was incorporated into the in vitro transcripts by using p223 as a template for T7 RNA polymerase. Cross-linking of p23 to radiolabeled RNA probes was carried out according to the method previously described (9), except that protein-RNA complexes were analyzed by SDS-8% PAGE and visualized by autoradiography. To synthesize double-stranded DNA (dsDNA) probes, an EcoRI/SpeI fragment from p223 was used as a template. [32P]dCTP was incorporated by incubation with Klenow fragment after restriction digestion. The single-stranded DNA (ssDNA) probes were obtained by heat denaturation of the synthesized dsDNA probes. The complexes of p23-ssDNA and p23-dsDNA were analyzed by 4% PAGE and visualized by autoradiography.
Testing for the ability of p23 to suppress PTGS. A. tumefaciens EHA 105, carrying pCam23 expressing p23 or pBin-35S-mGFP5 expressing GFP (4) (upon induction), was used for posttranscriptional gene silencing (PTGS) suppression analyses in tobacco. Induction and infiltration of Agrobacterium into GFP transgenic plants (16C) was performed based on a protocol previously described (4). GFP fluorescence in whole plants was monitored by using a high-intensity UV lamp (model SB-100P/F, 365 nm; Spectroline). Plants coinfiltrated with pBin-35S-mGFP5 and A. tumefaciens expressing the 2b protein of Tomato aspermy virus (T2b) were used as a positive control (24). Total RNAs were extracted from the leaves at 3 and 6 days postinfiltration and subjected to Northern blot analysis. The blot was probed with digoxigenin-labeled full-length antisense GFP RNA. probes.
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FIG. 2. Immunoblot detection of p23 in infected kenaf protoplasts and leaves. (A) Total proteins (5 or 10 µg) from infected or mock-inoculated leaves. I represents HCRSV-infected leaves. M represents mock-inoculated leaves. The purified p23 protein expressed from E. coli was used as a positive control. (B) Equal loading of total proteins (5 µg) isolated from protoplasts inoculated with tp223 at 0, 12, 24, and 36 h p.i.
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FIG. 3. Whole-leaf immunoblot detection of p23. Fixed, cleared leaves were subjected to immunohistochemical detection. Alternate substrates were used for the detection of p23 (blue) and coat protein (red). Mock-inoculated control leaves (A) show only background coloration, whereas HCRSV-infected leaves (B) show intense punctate blue staining or intense red staining to indicate the presence of p23 or coat protein, respectively.
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p23 is essential for HCRSV replication in kenaf. In order to explore the possible functions of p23, three point mutations were introduced into the p23 coding sequence without altering the amino acid sequence of the overlapping ORF p28. Every p23 mutant examined failed to replicate in both kenaf protoplasts and whole plants. No symptoms were observed, and progeny RNA remained undetectable in the inoculated and upper leaves of kenaf at 2 days p.i. (data not shown) and at 7 days p.i. when wild-type control infections were detectable (Fig. 4A). In addition, neither of the two sgRNAs could be detected in infected leaves, suggesting a low level of accumulation. Further, at 24 h p.i., gRNA and the two sgRNAs of HCRSV were detectable in protoplasts inoculated with in vitro transcripts of a biologically active cDNA clone of HCRSV (p223) but not in protoplasts inoculated with any of the described mutants (Fig. 4B).
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FIG. 4. Northern blot analyses of kenaf protoplasts and plants inoculated with in vitro transcripts of the p23 mutants. (A) Kenaf leaves at 7 days p.i. with tp223, tM23/1T, tM23/S33-1, and tM23/S150-1, respectively. (B) Transfected protoplasts at 24 h p.i. The 18S RNA bands (at the bottom) indicate equal RNA loadings.
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FIG. 5. Complementation between the p23 mutant M23/S33-1 and a rescue construct expressing p23, pCam23. tM23/S33-1 was used to inoculate kenaf plants after infiltration with pCam23. Total RNA was extracted at 2, 7, and 14 days p.i. and subjected to Northern blot and RT-PCR analyses. (A) Northern blot with a DIG-labeled cRNA probe specific to the 3' 0.8 kb of the HCRSV sequence. Genomic RNA was detected in leaves infiltrated with pCam23 but not with p1300. (B) RT-PCR analysis with p23 specific primers detected a 630-bp band in leaves infiltrated with pCam23 but not with p1300. M, DNA marker.
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FIG. 6. Infectivity of HCRSV p23 mutants in C. quinoa. (A) One percent agarose gel electrophoresis of RT-PCR products amplified from total RNA (isolated from local lesions appearing in C. quinoa) with p23 specific primers. (B) Northern blot of p23 mutants in protoplasts. Total RNA was extracted at 24 h p.i. The 18S RNA bands indicate similar RNA loading.
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FIG. 7. Northern blot showing GFP accumulation in the infiltrated leaves of the N. benthamiana GFP transgenic plants. Total RNAs were extracted from the leaves 3 and 6 days after infiltration with pBin35S-mGFP5 (pBin; lanes 2 and 5), pBin35S-mGFP5/pCam23 (p23; lanes 3 and 6), pBin-35S-mGFP5/T2b (T2b; lanes 4 and 7), or noninfiltrated leaves (Ni; lane 1), respectively, and monitored by Northern blot analysis. The blot was hybridized with digoxigenin-labeled GFP full-length antisense RNA probes. 18S RNA indicates equal RNA loading.
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Mutational analyses demonstrated that p23 is essential for the replication of HCRSV in a host-specific manner. Since the ORF for p23 overlaps with ORF p28, the expression of p23 may be the result of a ribosomal frameshift. Viral proteins from Red clover necrotic mosaic virus and Cocksfoot mottle sobemovirus, which have been shown to employ frameshifts for expression, have also been shown to be involved in viral replication and downregulation of the expression of other essential genes (22, 29). In contrast, the translation of the p22-nested p19 gene of TBSV is influenced by the nucleotide sequence context surrounding the p22 start codon. In this case, context-dependent ribosomal leaky scanning leads to increased translation from the downstream p19 start codon. This cotranslational regulation of gene expression results in different levels of p19 and p22 protein accumulation, which influences host-dependent onset of symptoms (39). The possibility of a similar expressional regulation mechanism for the two nested genes of HCRSV (p23 and p28) remains to be investigated. Scanning through the sequenced genomes of other carmovirus members reveals no similarly sized ORFs in the corresponding location of any other viruses in the genus. Thus, although the precise mechanism by which p23 affects the host-specific replication of HCRSV remains to be elucidated, several possibilities can be postulated.
First, it is possible that p23 interacts with specific host factors to regulate the host replicational machinery involved in viral replication. Several plant species contain specific resistance genes corresponding to individual viral proteins, and it has recently been shown that the replication of tobamoviruses is inhibited by mutations in specific host genes and that this regulation is achieved through interactions between viral proteins and a certain host factor(s) (45). In TBSV, host-specific symptom determination via the 19-kDa protein (p19) enables the systemic spread of the virus in certain host plants (8, 37, 38, 39) through a mechanism associated with p19 suppression of gene silencing (33, 34). However, although gene silencing and its suppression are similarly employed in a variety of host-virus interactions to regulate gene expression (4, 21), p23 does not appear to be a suppressor of PTGS, as tested in GFP transgenic tobacco. Attempts to investigate p23 suppression of PTGS in kenaf have failed due to premature cell death of the kenaf leaves following Agrobacterium coinfiltration; therefore, the possibility that p23 suppresses PTGS in kenaf requires further examination.
A second possibility is that p23 might function as a cis- or trans-activator to either directly or indirectly regulate the expression of genes involved in viral replication. Such a host-specific effect has been reported for ORF C2 mutants of Tomato yellow leaf curl virus (TYLCV) (47), wherein C2 is essential for the infection of tomato by TYLCV, but not of tobacco. In addition, the C2 ORF also plays a role in the transactivation of viral gene expression and is involved in host and tissue-specific infection (12, 47). A similar regulatory process has been postulated for a cis-acting repressor element located within, or near to, the ORF C2 of Tomato golden mosaic virus and is believed to repress the expression of the CP gene and thereby mediate virus-host interactions (41, 42, 43). Further investigations should reveal if p23 exploits a similar mechanism. As evidenced by the p23 mutagenesis experiments, there is an absolute requirement for p23 during HCRSV infection in kenaf but not in C. quinoa, raising the possibility that p23 shares a similar regulatory function to that of TYLCV ORF C2. In addition, we have observed that HCRSV CP also plays a role in host-specific infection (27). Perhaps p23 confers its functional effect on the host-specific replication of HCRSV by interacting with the viral CP.
Finally, it is also possible that p23 may interact with the viral RdRp complex of p28/p81 to regulate viral replication. However, such speculations remain to be resolved through investigations of protein-protein interactions between p23 and any other viral or host components.
The lack of infectivity for the p23 mutant in kenaf could be complemented in trans by the infiltration of pCam23, confirming the requirement of p23 for HCRSV replication in kenaf. Within the genus Carmovirus, only the TCV p28 and its readthrough protein p81 have been shown to be required for viral replication (17). However, sequence analysis of p23 revealed no conserved domain except for an N-proximal leucine zipper-like motif. Leucine zipper domains have been shown to be involved in viral replication by mediation of protein-protein interactions (15, 20, 28). In addition, our results showed that p23 does not bind nucleic acids in vitro. Nevertheless, this failure might be due to the denatured state of the protein during the experiment and/or to possible conformational changes in the expressed p23 during its expression and purification from E. coli. Further, any interaction between p23 and other viral or host proteins remains to be investigated. Hence, we cannot rule out the possibility that the leucine zipper-like motif in p23 may have a functional role in vivo.
The involvement of p23 in host determination is unique among Carmoviruses, making this the first report of a Carmovirus-encoded protein with a host-specific replicative function. However, the mechanism by which p23 affects viral replication and whether the requirement of p23 for HCRSV replication is directly correlated to its evolutionary adaptation to kenaf remain to be elucidated.
We thank David Baulcombe of the John Innes Centre, Norwich, United Kingdom, for the 16C GFP transgenic tobacco line and Tianwei Lin of The Scripps Research Institute, La Jolla, Calif., for help in preparing the graphics.
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