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Journal of Virology, November 2002, p. 11637-11644, Vol. 76, No. 22
0022-538X/02/$04.00+0 DOI: 10.1128/JVI.76.22.11637-11644.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Elizabeth Wolffe,
and Bernard Moss*
Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892-0445
Received 10 July 2002/ Accepted 19 August 2002
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The EEV membrane contains at least four glycoproteins, which are products of the A33R (27), A34R (17), A56R (32), and B5R (7, 15) genes and one nonglycosylated protein encoded by the F13L gene (13). Two additional proteins, A36R (22, 37) and F12L (36), found on the IEV are absent from extracellular virions. Mutations of A56R cause syncytia (31), whereas deletion of any of the other IEV or EEV proteins results in a small-plaque phenotype. The small-plaque phenotypes of B5R and F13L deletion mutants result from a defect in wrapping of IMV (2, 8, 41), and those of A33R, A34R and A36R deletion mutants and an A36R point mutant result at least partly from a failure to form actin tails (26, 28, 29, 38, 42, 43).
The relative amounts of CEV and EEV produced during infection vary with different virus strains. The WR and IHD strains, although both derived from the New York City Board of Health strain, make small and large amounts of EEV, respectively, resulting in different plaque phenotypes (24). In liquid culture medium, the WR and New York City Board of Health strains form large, round plaques, whereas IHD forms numerous satellite plaques that take on a comet shape. The plaque phenotype of IHD can be largely explained by a single amino acid mutation in the A34R open reading frame (ORF), which regulates the dissociation of virions from the cell surface (4). Deletions of segments of the extracellular domain of the B5R protein and abnormal expression of the A33R protein can also produce comet-shaped plaques (16, 26).
The present study was initiated after we noted that the small plaques, which formed when an A36R deletion mutant virus stock was titered under a liquid overlay, were heterogeneous. Although the majority of plaques were round, a small number looked like comets. Because the A36R deletion mutant spreads very slowly, we suspected that the comet plaques originated from a virus with a spontaneous second-site mutation that had a selective growth advantage because of enhanced EEV release. We tested this hypothesis by serially passing virus from independent cultures of a plaque-purified A36R deletion mutant. Comet-forming viruses with either C-terminal truncations in the A33R ORF or a point mutation in the B5R ORF were selected after only a few passages.
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A33R and v
A36R, respectively. Plaque assay. Following adsorption of the virus to monolayers of BS-C-1 cells for 1 h at 37°C, EMEM containing 2% fetal bovine serum was added. Two days later the medium was removed and crystal violet (0.1% in 20% ethanol) was added for 30 min. The cells were then washed and dried. When a semisolid overlay was used, 0.6% SeaKem ME agarose (BioWhittaker Molecular Applications, Rockland, Maine) and 5% fetal bovine serum were included in the medium. After 2 days, the overlaid cells were fixed with formaldehyde (20% in saline), the semisolid overlay was removed, and the cells were stained with crystal violet.
One-step growth. BS-C-1 cells were infected at a multiplicity of 5 PFU per cell for 1 h and were then washed twice with fresh medium to remove unadsorbed virus. At time intervals thereafter, the medium was collected and clarified by low-speed centrifugation to sediment detached cells and debris. The adherent cells were scraped into 1 ml of fresh medium and combined with the cell pellet from the clarified medium. The cells were frozen and thawed three times and sonicated for 30 s. Virus titers in cell lysates and media were determined by plaque assays with an agar overlay.
Transfection. Approximately 2 µg of PCR product in 100 µl of Opti-MEM (Invitrogen, Carlsbad, Calif.) was mixed with 8 µl of Lipofectamine 2000 (Gibco BRL, Gaithersburg, Md.) in 100 µl of Opti-MEM and kept at room temperature for 15 min. Then 800 µl of Opti-MEM was added. BS-C-1 cells were infected at a multiplicity of 1 PFU per 20 cells. After 2 h, the cells were washed with Opti-MEM and the DNA plus Lipofectamine mixture was added to the cell monolayer. Three hours later, EMEM containing 2% fetal bovine serum was added. The cultures were harvested after 2 days at 37°C, and the virus was analyzed by plaque assay.
PCR and sequencing of viral DNA. DNA from virus-infected cells was prepared for PCR by treatment with protease and purified using the QIA DNA blood minikit (Qiagen, Hilden, Germany), using the procedure suggested by the manufacturer. Primers 5' to 3' GGTCGTTAGTAGGGAGGAGAACAAAG and GCGCAAGCACTAGGCATCAGTTC were used to amplify the A33R ORF; primers 5' to 3' CCGATGTCTTGATTACCTGGCT and CTGTTATAGTCAACACACCCATTGGAG were used for amplification of the A34R ORF, and primers 5' to 3' ATTGATGTTTTTAACGCTACAATC and GTACATCTCATTGTCATTTACAAC were used to amplify the B5R ORF. The Pfu Turbo DNA polymerase (Stratagene, La Jolla, Calif.) was added; the extension reaction time for A33R and A34R ORFs was 45 s and for the B5R ORF was 80 s. The PCR products were purified using the Wizard PCR Preps DNA purification resin (Promega, Madison, Wis.). The BigDye terminator cycle sequencing v2 Ready reaction kit (Applied Biosystems, Foster City, Calif.) was applied, and the DNA was sequenced in the 3100 New Genetic Analyzer (Applied Biosystems).
Metabolic labeling and immunoprecipitation. Confluent BS-C-1 cells (in 35-mm-diameter dishes) were infected at a multiplicity of 5 PFU per cell. At 5 h after infection, the medium (1 ml) was replaced with methionine- and cysteine-free Eagle minimum essential medium (Sigma, St. Louis, Mo.) supplemented with 2% dialyzed fetal bovine serum (Invitrogen) to which 70 µCi of 35S-protein labeling mix (Easy Tag; Perkin-Elmer Life Sciences, Boston, Mass.) had been added. The cells were harvested at 20 h after infection, washed with phosphate-buffered saline, and suspended in 200 µl of lysis buffer (50 mM Tris, pH 8.0, 150 mM NaCl, and 1% NP-40) containing protease inhibitors (Roche Diagnostics, Mannheim, Germany). After 30 min at 4°C, the extract was centrifuged at 20,000 x g for 30 min and 200 µl of lysis buffer and 50 µl of protein A-agarose (Roche Diagnostics) were added to the supernatant. The mixture was rotated for 2 h at 4oC and centrifuged at 1,000 x g for 1 min. The supernatant was incubated for 20 h at 4°C with 2 µl of serum from a rabbit that had been immunized with a synthetic peptide, comprised of amino acids 84 to 100 of the A33R protein. Protein A-agarose was then added, and the incubation was continued for 2 h at 4°C. The complex was washed several times with phosphate-buffered saline and dissolved in 50 µl of loading buffer. Following electrophoresis in 4 to 20% polyacrylamide (Invitrogen), the gels were dried and exposed to Kodak BioMax MR film. The molecular masses of viral proteins were estimated by comparison with Full-Range-Rainbow protein markers (Amersham, Little Chalfont, Buckinghamshire, England).
CsCl gradient analysis of virus. Monolayers of RK13 cells were infected at a multiplicity of 5 PFU per cell. Five hours later, the medium (10 ml) was replaced with methionine- and cysteine-free Eagle minimum essential medium (Sigma) supplemented with 2% dialyzed fetal bovine serum (Invitrogen) and 900 µCi of a 35S-protein labeling mix (Easy Tag; Perkin-Elmer Life Sciences). At 40 h after infection, the medium was harvested and cells and large debris were removed by low-speed centrifugation. Cells were scraped and collected by low-speed centrifugation, resuspended in swelling buffer (10 mM Tris, pH 9.0), and disrupted by Dounce homogenization. The cytoplasm was then collected, after removal of the nuclei by low-speed centrifugation. Virus from the cytoplasm or the culture medium was centrifuged through 36% sucrose cushion in an SW41 rotor at 32,000 revolutions/min for 12 min at 4°C. The virus was then resuspended in buffer and layered on the top of a CsCl step gradient, as previously described (8). Fractions were collected from the bottom of the centrifuge tube, and the amount of radioactivity was determined by scintillation counting.
Virulence of purified virus for mice. BS-C-1 cells were harvested 2 days after infection by low-speed centrifugation. The cells were suspended in swelling buffer (10 mM Tris pH 9.0) and were Dounce homogenized. The cytoplasm was separated from nuclei by low-speed centrifugation and layered on 36% sucrose in the above buffer. After centrifugation at 13,500 revolutions/min in an SW28.1 rotor for 80 min at 4°C, the virus was suspended in a small volume of the buffer and its infectivity was determined by plaque assay. The virulence of vaccinia virus for mice was then determined essentially as described earlier (18, 35, 40). Groups (n = 4) of 5-week-old female BALB/c mice were anesthetized and inoculated intranasally with 5 x 106 PFU of purified virus in 20 µl of 10 mM Tris, pH 9.0. Mice were weighed daily, and those that lost more than 30% of their initial body weight were terminated.
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A36R.
After propagating v
A36R, obtained from Parkinson and Smith (22), we noted that a few of the plaques formed comets under a liquid overlay. The comet-forming virus could have resulted from a second-site mutation or a contamination in our laboratory. To discriminate between these possibilities, we plaque purified v
A36R and then serially propagated it in separate BS-C-1 monolayers. After four passages, numerous comet-forming plaques were identified in most cultures. The plaques formed by comet-forming viruses were slightly larger under agar than those of the parental v
A36R, facilitating their purification. We named the comet-forming mutants as follows: v
A36R.c1, v
A36R.c2, v
A36R.c3, v
A36R.c5, and v
A36R.c10. The appearances of these plaques, except for v
A36R.c5, which was subsequently shown to have the same mutation as v
A36R.c2, are shown in Fig. 1. Under a liquid overlay, the comet-forming plaques were distinct from those of the parental v
A36R or a wild-type revertant (vRev
A36R) obtained by recombination with the A36R gene (22). Under agar, the isolated virus plaques were much smaller than the wild-type revertant virus. These data suggested that the comet-forming isolates resulted from second-site mutations.
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FIG. 1. Plaque morphology of virus clones. BS-C-1 monolayers were infected with v A36R.c1, v A36R.c2, v A36R.c3, v A36R.c10, v A36R, or vRev A36R. Following adsorption, fluid or agar-containing overlays were added. After 2 days of incubation at 37°C, the cultures were fixed and stained with crystal violet.
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A36R.c1, v
A36R.c2, v
A36R.c3, v
A36R.c5, and v
A36R.c10 were identical to each other and to that of v
A36R and the WR strain of vaccinia virus. Consequently, we sequenced the A33R ORFs of the comet-forming and parental viruses. Mutations truncating the A33R ORF, relative to that of v
A36R and WR, were found in v
A36R.c1, v
A36R.c2, vA36R.c5, and v
A36R.c10 (Fig. 2). The mutations in v
A36R.c2 and vA36R.c5 were identical, and therefore the latter was not subjected to further analysis. In each case the mutations were between codons 116 and 143. A nucleotide substitution produced a stop codon in the A33R ORF of v
A36R.c2 and v
A36R.c10, whereas in v
A36R.c1 there was a duplication of 4 nucleotides that altered the reading frame, resulting in a stop codon downstream. The other comet-forming mutant v
A36R.c3, however, had no mutation in the A33R ORF. |
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FIG. 2. Predicted amino acid sequences of the C-terminal regions of the A33R ORFs of v A36R, v A36R.c1, v A36R.c2, and v A36R.c10. The C-terminal sequence of v A36R is identical to that of the WR strain of vaccinia virus and also to that of v A36R.c3. Amino acid numbers are shown. The amino acids of v A36R.c1 formed by a frameshift mutation are underlined.
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A36R and v
A36R.c3, 23 kDa for v
A36R.c1, and 16 kDa for v
A36R.c2. The mobilities of these A33R polypeptides were consistent with the sequencing results, which had indicated an intact A33R ORF for v
A36R and v
A36R.c3 and truncated ones for v
A36R.c1 and v
A36R.c2. A truncated protein was also predicted for v
A36R.c10; however, a diffuse band of about 25 kDa was detected. An additional diffuse band of about 30 kDa was detected in immunoprecipitates from lysates of cells infected with v
A36R.c1 and v
A36R.c10, perhaps representing a protein that stably interacts with the mutated A33R protein.
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FIG. 3. SDS-PAGE analysis of the A33R proteins made by mutant viruses. Lysates from infected BS-C-1 cells that had been metabolically labeled with 35S-amino acids were incubated with antibody against a synthetic peptide representing amino acids 84 to 100 of A33R. The bound proteins were analyzed by SDS-PAGE and autoradiography. The position and masses of marker proteins are indicated.
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A36R.c3, the sequences were identical to that of wild-type vaccinia virus. The mutation in v
A36R.c3 was predicted to cause the nonconservative substitution of serine for proline 189. SDS-PAGE analysis and Western blotting indicated that the B5R protein expressed by v
A36R.c3 and the other viruses all had the same mobility (data not shown). In summary, these data suggested that a second-site mutation in either the A33R or the B5R gene provided a selective advantage for the A36R deletion mutant and was associated with the comet-forming phenotype.
Transfer and reversal of the comet-forming phenotype by recombination.
The finding of independent mutations in ORFs encoding membrane glycoproteins, however, provided only circumstantial evidence that these were the cause of the comet-forming phenotype. We needed to exclude contributions from mutations in other genes of vaccinia virus. We chose v
A36R.c1 as an example to directly prove that truncations of the A33R ORF induce the comet-forming phenotype. The PCR products of the A33R ORF from v
A36R.c1 or the WR strain were separately transfected into cells infected with v
A36R. The transfected cells were harvested, and the plaques of the progeny were examined in liquid medium. While 3% of the progeny produced in cells that were transfected with DNA encoding the A33R ORF of v
A36R.c1 produced comets (Fig. 4A), no comet-forming progeny was detected when the A33R ORF of WR was used for transfection (Fig. 4B). To prove that the comet-forming viruses were derived by recombination and not mutation, three comet-forming viruses were plaque purified under agar. The plaque phenotype of one of these is shown in Fig. 4C. In each case, the DNA sequence of the A33R ORF was identical to that of v
A36R.c1. As a further proof of the origin of the comet-forming phenotype, we reversed it by transfection of v
A36R.c1-infected cells with the PCR product of the A33R ORF of the WR strain of vaccinia virus. We noted the presence of non-comet-forming plaques under liquid overlay, which appeared slightly smaller than v
A36R.c1 under agar. Virus, from six such plaques, was isolated, and each sample produced exclusively small, round plaques that were identical to those of v
A36R and had an A33R sequence identical to that of the WR strain of vaccinia virus.
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FIG. 4. Marker transfer of the comet-forming phenotype. BS-C-1 cells were infected with v A36R and were then transfected with the PCR product of the A33R ORF of v A36R.c1 (A) or that of vaccinia virus strain WR (B) or with the PCR product of the B5R ORF of v A36R.c3 (D) or with that of WR (E). The cells were harvested after incubation for 2 days, and the diluted lysates were analyzed by plaque assay in BS-C-1 cells with fluid medium. Plaque-purified recombinant viruses, obtained by marker transfer of the A33R (C) and B5R (F) ORFs of v A36R.c1 and v A36R.c3, respectively, were assayed on BS-C-1 cell monolayers with fluid medium.
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A36R.c3 to transfer the comet-forming plaque characteristic to v
A36R was also determined by transfection. Approximately 11% of the plaques produced by the progeny had a comet-like appearance (Fig. 4D), whereas none was detected when B5R DNA of the WR strain was used for transfection (Fig. 4E). Six of the comet-forming isolates were plaque purified, and the plaque phenotype of one of them is shown in Fig. 4F. The nucleotide sequence of the B5R ORF of each isolate was identical to that of v
A36R.c3. We then succeeded in reversing the comet-forming phenotype by transfection of v
A36R.c3-infected cells with the PCR product of the B5R ORF of the WR strain of vaccinia virus. Small plaques without comets were detected, and virus from six were plaque purified three times. The plaques formed by these isolates were identical to those of v
A36R, and the sequences of the B5R ORFs were identical to that of the WR strain of vaccinia virus.
Formation of IMV and EEV.
Comets result from enhanced release and spread of extracellular virus. We measured the amounts of cell-associated and released virus produced during single-step growth of v
A36R.c1, v
A36R.c3, and the parent v
A36R in BS-C-1 cells. While 1.5% of the total virus was present in the medium of cells infected with v
A36R, this percentage was much higher in cells infected with v
A36R.c1 or v
A36R.c3, reaching 50.3 or 49.4%, respectively (Fig. 5).
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FIG. 5. One-step growth curves. BS-C-1 cells were infected with v A36R.c1, v A36R.c3, or v A36R at a multiplicity of 5 PFU per cell. At the indicated times, virus titers in the fluid media (white ovals) and the cells (black ovals) were determined by plaque assay.
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A36R.c1, v
A36R.c3, or v
A36R and were metabolically labeled with methionine and cysteine. The labeled viruses formed during 40 h were analyzed in CsCl gradients. The levels of IMV (refractive index of 1.361) and of wrapped viruses (IEV and CEV; refractive index of 1.357) from the cytoplasmic fractions of the cells were similar for the three viruses (Fig. 6A). However, the amount of released virus (EEV) in the culture medium (refractive index of 1.358) was higher for v
A36R.c1 and for v
A36R.c3 than for vA36R (Fig. 6B). The higher yield of EEV obtained with v
A36R.c1 than with v
A36R.c3 was similar to the difference in infectious virus recovered (Fig. 5). In this experiment, the percentage of the total infectivity that was released into the culture medium of RK13 cells infected with v
A36R.c1, v
A36R.c3, or v
A36R was 60, 34, or 2%, respectively, similar to values obtained with BS-C-1 cells.
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FIG. 6. Analysis of labeled virus in CsCl gradients. RK13 cells were infected with v A36R (), v A36R.c1 ( ), or v A36R.c3 ( ) and labeled with a mixture of [35S]methionine and [35S]cysteine. Virus particles in the cells (A) and in the culture media (B) were concentrated by sedimentation through a sucrose cushion and were applied to CsCl gradients and centrifuged. Fractions were collected from the bottom of each tube, and radioactivity was determined by scintillation counting.
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A36R was highly attenuated, compared with the WR parental strain of vaccinia virus, when inoculated into mice by the intranasal route (22). We considered that the enhanced ability of the comet-forming viruses to spread in cell monolayers might correlate with increased virulence. Mice were infected intranasally with 5 x 106 PFU of v
A36R.c1, v
A36R.c3, v
A36R, or the WR strain of vaccinia virus, and each mouse was weighed daily. While mice infected with the WR strain of vaccinia virus lost more than 30% of their initial weights within the 1st week following inoculation, those infected with v
A36R.c1, v
A36R.c3, or v
A36R lost little weight during this period of time and fully recovered thereafter (Fig. 7). No significant difference in the weight losses caused by v
A36R, v
A36R.c1, and v
A36R.c3 was observed. All surviving mice had significant neutralizing antibodies, as determined on the 14th day following inoculation (data not shown).
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FIG. 7. Virulence for mice. Purified preparations containing 5 x 106 PFU of v A36R (), v A36R.c1 ( ), v A36R.c3 ( ), or WR ( ) were inoculated intranasally into mice. The weights of the four mice in each group were determined daily, and those that lost more than 30% were sacrificed. The percentages of initial average weight are plotted against days before and after infection.
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The A36R protein is a component of the IEV required for actin tail formation but is not present in the outer membrane of extracellular virus (9, 22, 37, 43). Because deletion of the A36R gene restricts the spread of virus in cell monolayers, it provided an ideal genetic background for the isolation of second-site mutants exhibiting enhanced virus spread. After several sequential passages of the deletion mutant, comet-type plaques were noted. The proportion of comet-forming plaques increased with passage number, indicating that they had an advantage over the parental virus. The comet-forming viruses characterized in the present study had mutations in either the A33R or B5R ORF. Four mutants were truncated in the C-terminal domain of the A33R ORF; the truncation was either 35 (v
A36R.c1 and v
A36R.c10) or 64 (v
A36R.c2 and v
A36R.c5) amino acids. The fifth comet-forming virus, v
A36R.c3, had proline 189 of the B5R ORF replaced by serine. It was possible to construct the comet-forming viruses by transfecting vA36R-infected cells with either the truncated A33R ORF derived from v
A36R.c1 or with the mutated B5R ORF from v
A36R.c3, proving that single mutations were responsible for the comet phenotype. Furthermore, non-comet-forming revertants could be isolated by transfecting v
A36R.c1-infected cells with the wild-type A33R ORF or v
A36R.c3 -infected cells with the wild-type B5R ORF.
The A33R and B5R mutants exhibited enhanced release of virus from BS-C-1- or RK13-infected cells. Whereas only 2% of the infectious virus produced by the A36R deletion mutant was found in the medium, approximately half of the infectious virus produced by v
A36R.c1 or v
A36R.c3 was released. The additional virus released into the medium by v
A36R.c1 and v
A36R.c3 was shown to be EEV by CsCl gradient analysis. Because the second-site mutants still did not make actin tails, as demonstrated by fluorescence microscopy, and because there were no observable differences in morphogenesis, as seen by electron microscopy (data not shown), we attributed their selection solely to increased virus release. Although the second-site mutants were able to outgrow the parent A36R deletion mutant in tissue culture, this was not correlated with higher pathogenicity for mice. Either enhanced spread does not occur in vivo, or the released virus is more susceptible to the immune system than is the CEV.
In conclusion, the present studies provided insights into the modes of orthopoxvirus spread in tissue culture. While direct cell-to-cell spread via virus-tipped microvilli is the dominant mechanism, enhanced virus release provides an alternative when that is prevented. It seems likely that the two mechanisms are antagonistic, since the CEV must adhere tightly to the microvilli. The mechanism of adherence is unknown, but the present and previous studies suggest that the A33R, A34R, and B5R proteins are involved. Whether these proteins interact with cellular proteins on the cell surface or with viral proteins, perhaps derived from the fused outer IEV membrane, remains to be determined. Our finding that three independent A33R mutants have C-terminal truncations may suggest that the deleted region is involved in protein-protein interactions.
Permanent address: Department of Virology, Hebrew University-Hadassah Medical School, Jerusalem, Israel. ![]()
Present address: Sangamo BioSciences, Inc., Richmond, CA 94804. ![]()
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