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Journal of Virology, October 2002, p. 10307-10319, Vol. 76, No. 20
0022-538X/02/$04.00+0 DOI: 10.1128/JVI.76.20.10307-10319.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Applied Tumor Virology, INSERM U375Abteilung F0100, Deutsches Krebsforschungszentrum, D-69120 Heidelberg, Germany
Received 25 March 2002/ Accepted 17 July 2002
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The small nonstructural NS2 proteins of MVMp consist of three isoforms, NS2-P, -Y, and -L, that differ at their carboxy termini as a result of alternative splicing events (19, 59). They have a molecular mass of about 25 kDa, and all three isoforms share a common amino-terminal domain with NS1 which comprises the first 85 amino acids (aa) of each protein (21, 23, 43). NS2 proteins exist in phosphorylated and unphosphorylated forms that are mainly located in the cytoplasm of infected cells; however, nonphosphorylated NS2 can also be found in the nucleus (15, 19). NS2 proteins are the predominant virus-encoded proteins detected early in the S phase of infected cells, but their accumulation rapidly diminishes as, on the one hand, NS2 proteins exhibit a relatively short half-life (about 90 min) and, on the other hand, activity of the P4 promoter declines later in infection (19, 58, 74).
It has been previously reported that NS2 proteins from MVMp play a critical role in viral capsid assembly and, as a probable consequence, in the generation of viral single-stranded DNA (17, 61, 62). NS2 proteins have also been implicated in the production of the other viral replicative forms (14, 61, 62). Furthermore, NS2 proteins seem to enhance NS1-associated parvovirus-induced cell killing in some but not all cell lines tested (10, 13, 50). Although the molecular mechanisms behind NS2 functioning have not been elucidated yet, MVM NS2 proteins were shown to be strictly required for productive infection in cells from their natural host species, i.e., from the mouse, both in tissue cultures and in animals (12, 14, 17, 61, 62). Similarly, the small nonstructural proteins NS2 from the closely related H-1 virus are absolutely required for efficient virus production in rat cells but are dispensable in cell lines from other origins (51). In this case, NS2 proteins appeared to play a role not only in viral DNA synthesis but also in expression of all viral proteins. It was indeed suggested that NS2 proteins from H-1 virus modulate viral mRNA translation via a sequence located in the 3' untranslated region of the transcripts (52). In contrast to NS2 from MVMp and H-1 virus, the small nonstructural proteins from canine parvovirus (CPV) appeared to act in a host-independent manner, as a CPV-NS2-null mutant efficiently replicates in both canine and feline cell lines (88).
The species dependence of murine NS2 activity as well as the diversity of the viral processes in which these proteins appear to be involved led us to speculate that NS2 proteins need to interact with specific cellular factors to achieve some of their functions. Indeed, we previously reported that MVM NS2 proteins are able to interact with two members of the 14-3-3 protein family, the epsilon and the beta or zeta isoforms (11). This interaction seems to play a role in posttranslational modifications of the NS2 proteins (7). More recently we, and others, also found that unphosphorylated NS2 proteins interact with the nuclear export receptor Crm1 and are indeed actively exported out of the nuclei of infected cells via a Crm1-mediated nuclear export pathway (7, 64).
Crm1, also known as exportin-1, is a member of the importin beta family that recognizes and binds to a short, leucine-rich nuclear export signal (NES) and further forms a competent nuclear export complex together with Ran-GTP (4, 33, 36, 63, 65, 78). Studies on a number of exported proteins have led to the definition of a consensus NES as a set of critically spaced hydrophobic, primarily leucine, residues (9), but not all sequences conforming to the consensus are functional, and avid interaction with Crm1 can also occur in the absence of a consensus sequence (38, 41). We previously described that MVMp NS2 proteins contain a functional NES located at the junction of NS2 exon 1 and exon 2, which is required for Crm1 binding (U. Bodendorf, V. Eichwald, M. Fornerod, R. Bischoff, M. Klein, J. Rommelaere, and N. Salomé, abstr. 2es Journées Francophones de Virologie, Virologie 4:179, 2000). Compared to other well-characterized NESs, the MVM NS2 NES showed the highest affinity for Crm1 (3, 49), although the NS2 NES sequence is rather poor in leucine residues (3; Bodendorf et al., Virologie 4:179, 2000) when compared to the proposed NES consensus (9). Several viral proteins, including human immunodeficiency virus type 1 (HIV-1) Rev protein (31), human T-cell lymphotropic virus type 1 Rex protein (9), herpes simplex virus ICP27/IE63 protein (72), adenovirus E1B 55-kDa and E4 34-kDa proteins (27, 46), and hepatitis B virus X protein (32), contain functional NESs. Most of these viral proteins play a critical role in the nuclear export of viral mRNAs or can inhibit cellular RNA export. NESs have also been identified in cellular proteins, many of which are involved in transcription, cell signaling cascades, oncogenic transformation, and cell cycle regulation. Examples include cAMP-dependent protein kinase inhibitor (PKI) (89), mitogen-activated protein kinase kinase (1), TFIIIA (35), Mdm2 (34), p53 (79), I
B
(42), NF-AT (45), cyclin B1 (84), c-Abl (80), and Smad1 (92). The activities of most of these proteins appear to be tightly regulated by their NESs.
Given the facts that MVM NS2 proteins are absolutely required for virus production in a host-cell dependent manner and that they undergo Crm1-dependent nuclear export, it is tempting to speculate that a strong, functional NES might contribute to NS2 activities during the parvovirus replication cycle. To test this hypothesis, we investigated whether the nuclear export function of NS2 contributes to the efficiency of virus production and, if so, which stages of the infectious cycle depend on NS2 export. To this end, two MVM mutant genomic clones generating NES-deficient NS2 proteins were constructed and further assayed for their ability to sustain efficient progeny virion production. Although both mutants were proficient in viral capsid protein synthesis, infectious mutant virions could be recovered for only one of these mutant genomic clones after transfection of human or mouse cells. In this case, disruption of the NES site within the NS2 proteins resulted in nuclear retention not only of these viral products but also of infectious progeny MVM particles. These results indicate a possible role for the NES-dependent nuclear export and/or cytoplasmic localization of NS2 in the efficient release of progeny virions from infected cell nuclei. Our data also show that nuclear export or proper subcellular localization of NS2 contributes to the efficiency of parvovirus infection and cytotoxicity.
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FIG. 1. Mutagenesis strategy in the NES site of NS2. (A) The line scheme of the single-stranded MVMp genome shows the positions of the nonstructural gene promoter (P4) and the capsid gene promoter (P38). The three classes of RNA transcripts encoded by MVM, denoted R1 through R3, with introns ( ), polyadenylation sites (AAA), and open reading frames (boxes) encoding NS1, NS2, VP1, and VP2 proteins, are aligned below. The two black bars below the R2 transcript indicate the position of the NES site within the NS2 coding sequence. The stippled frame indicates the region that is shown in greater detail in panel B. (B) DNA sequence between MVMp nt 1981 and 2014 and amino acid sequence for this region of open reading frames 3 (for NS1) and 2 (for NS2). NS2 exon 2 initiates at the indicated large intron splice acceptor site. Mutations introduced into this sequence to create the two MVM-NES(-) genomes are shown in boxes above the wild-type sequence, and the resulting substitutions within the NS2 coding sequence are indicated in the last two lines, with the modified amino acids highlighted in bold. (C) Alignment of the wild-type and mutated NS2 NES sites with the NES consensus sequence (9). Leucine-like hydrophobic residues are shown in bold, and amino acid substitutions within the mutated NS2 NES sequences are shown in italics. x, any amino acid; Z, Met, Leu, Ile, Phe, or Val.
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(ii) pdBMV-NES22. Two oligonucleotide primers, 5' CTAGGTTCGGCACGCAGTCCATTCACGACACCG 3' and 5' CGGTGTCGTGAATGGACTGCGTGCCGAACCTAG 3', which harbor the desired nucleotide changes (underlined in primer sequences) within the NS2 NES coding region, were introduced into the pdBMVp plasmid as described for the pdBMV-NES21 construction.
Subcloning steps were performed according to standard procedures (71). Both the pdBMV-NES21 and pdBMV-NES22 constructions were sequenced across the entire substituted BstEII-XhoI fragment to ensure that no other mutation than those expected had been introduced. Plasmids containing wild-type and mutated MVMp genomes were propagated in the E. coli strain SURE (Stratagene). Isolation and purification of plasmid DNA were performed using the plasmid Maxi kit (Qiagen) according to the manufacturer's instructions.
Mammalian cell lines. Mouse A9 fibroblasts (81) were grown in Eagle's minimum essential medium (MEM; Sigma) supplemented with 5% heat-inactivated fetal bovine serum, 1% nonessential amino acids, 2 mM L-glutamine, and 100 µg of gentamicin per ml. Human 293T cells, which were shown to be highly transfectable (67), were propagated in Dulbecco's modified Eagle's medium (Sigma) supplemented with the same additives except the nonessential amino acids.
Transfection, virus stock, and infection. The pdBMVp, pdBMV-NES21, and pdBMV-NES22 plasmids were transfected in 293T cells using the standard calcium phosphate precipitation protocol (39) with 10 µg of plasmid DNA per 106 cells and in A9 cells using the Lipofectamine transfection reagent as recommended by the supplier (Gibco BRL) with 4 µg of DNA per 106 cells.
For virus production, cells were diluted 1:10 at day 2 posttransfection and further incubated until the appearance of cytopathic effects or until otherwise specified. Cells were then harvested and lysed in 50 mM Tris (pH 8.7)-0.5 mM EDTA by means of three freeze-thaw cycles. Cell debris was removed by centrifugation and virus stocks were stored at 4°C. Virus stocks were titered by DNA hybridization assays as previously described (44). Briefly, A9 and NB-324K indicator cells were inoculated with serial dilutions of virus, incubated for 48 h, and transferred to nitrocellulose filters (NC45; Schleicher and Schuell). The filters were treated with 0.5 M NaOH-1.5 M NaCl to denature DNA and subsequently neutralized with 0.5 M Tris (pH 7.5)-1.5 M NaCl. The membranes were backed at 80°C, hybridized with a 703-bp 32P-labeled MVM DNA probe corresponding to the EcoRV (nt 384)-EcoRI (nt 1084) fragment from the NS coding region, and exposed to X-ray films (Kodak) to detect DNA replication-positive cells. Virus titers were expressed as replication units (RU) per milliliter of virus suspension. Wild-type and mutant viruses were also tested for the ability to generate plaques on A9 and NB-324K indicator cells as described elsewhere (81).
To estimate the single-stranded DNA (ssDNA) content in the virus stocks, equivalent RU of wild-type and mutant viruses extracted in 50 mM Tris (pH 8.7)-0.5 mM EDTA were lysed in Hirt buffer (10 mM Tris [pH 7.4], 10 mM EDTA, 0.6% sodium dodecyl sulfate [SDS]) and treated with proteinase K (0.5 mg/ml; Boehringer Mannheim) to remove viral capsid proteins. The samples were DpnI digested, run on a 0.8% agarose gel, and subjected to Southern blot analysis (77) using the above-mentioned 32P-labeled MVM DNA probe. Blots were exposed to a Phosphor screen and ssDNA was quantitated using a Molecular Dynamics PhosphorImager and ImageQuant 5.1 software. Asynchronous A9 and 293T cells were then infected at a multiplicity of infection (MOI) of 10 RU per cell for wild-type MVMp and 30 RU per cell for the MVM-NES22 mutant in order to compensate for the difference in the ratio of ssDNA-containing particles versus replicative centers observed between wild-type and mutant viruses (see text). Where indicated, neuraminidase (type V, from Clostridium perfringens; Sigma) at 0.1 U per ml of culture medium was added at 4 h postinfection in order to limit infection to a single round by preventing readsorption of virus to cell receptors.
Antibodies. The following antibodies were used: for Crm1, the commercially available polyclonal goat antiserum SC-7825 (Santa Cruz Biotechnology); for NS2, the polyclonal rabbit antiserum SP6 directed against the C-terminal region of MVMp NS2 (11); for assembled capsids, the monoclonal antibody (MAb) B7, kindly provided by C. Parrish (Cornell, Ithaca, N.Y.) and purified by J. M. Almendral (Madrid, Spain), that specifically recognizes intact MVM capsids (53); for capsid proteins, the polyclonal rabbit antiserum VP2-Pas, a generous gift from J. M. Almendral (Madrid, Spain) that recognizes linear epitopes from viral structural VP1 and VP2 proteins and, to a lesser extent, intact capsids (E. Hernando and J. M. Almendral, manuscript in preparation), or a polyclonal rabbit antiserum directed against a region common to H-1 VP1 and VP2 (44). This last antiserum was used in immunoprecipitation and immunoblotting experiments whereas MAb B7 and VP2-Pas were used in the immunofluorescence assays.
For secondary antibodies, horseradish peroxidase-conjugated goat anti-rabbit or donkey anti-goat antibodies (Santa Cruz Biotechnology) were used in immunoblotting assays and Oregon green 488-conjugated goat anti-rabbit or goat anti-mouse antibodies (Molecular Probes) were used in immunofluorescence assays.
Metabolic radiolabeling and cell extracts. At 24 h postinfection or 48 h posttransfection, cells (106 cells per 10-cm dish) were metabolically labeled for 2 h with 200 µCi of Tran35S-label (1,000 Ci/mmol; ICN Pharmaceuticals) in Met- and Cys-free Eagle's MEM supplemented with 5% dialyzed fetal calf serum. Cells were subsequently lysed in 1 ml of the so-called Raf buffer (20 mM Tris [pH 8.0], 137 mM NaCl, 10% glycerol, 1% Nonidet P-40) containing a mixture of proteinase inhibitors (Complete; Roche Molecular Biochemicals), and proteins were harvested after removing cell debris by centrifugation in an Eppendorf centrifuge at full speed for 15 min.
Immunoprecipitation. Equal amounts (107 cpm) of labeled protein extracts were immunoprecipitated with 5 µl of appropriate antiserum and 60 µl of a 50% suspension of protein A-Sepharose beads (Pharmacia) for about 2 h at 4°C. The immunoprecipitates were washed four times with Raf buffer and resuspended in loading dye buffer (47). Dissociated immunocomplexes were separated in SDS-containing bipartite 8 and 12% polyacrylamide gels and visualized by autoradiography.
For immunoprecipitation-Western blot assays, equal amounts (ca. 4 x 105 equivalent cells) of cold protein extracts were immunoprecipitated with 20 µl of appropriate antiserum and 100 µl of a 50% suspension of protein A-Sepharose beads for 2 h at 4°C, washed as described above, and further processed for immunoblotting.
Immunoblotting. Total or immunoprecipitated protein extracts were fractionated by SDS-polyacrylamide gel electrophoresis with the indicated percentages of polyacrylamide and were transferred to a nitrocellulose membrane (Schleicher and Schuell). Membranes were blocked by an overnight incubation with 10% low-fat milk powder and 0.5% Tween 20 in phosphate-buffered saline (PBS) at 4°C, incubated with the indicated primary antibodies for 1 h at room temperature, washed three times in PBS containing 0.5% Tween 20, and further incubated with appropriate horseradish peroxidase-conjugated secondary antibodies for 1 h at room temperature. Immunoreactive proteins were detected by enhanced chemiluminescence as recommended by the supplier (Perkin-Elmer Life Sciences, Inc.).
Immunofluorescence. Cells were grown on coverslips, fixed in 3.7% formaldehyde for 10 min, dehydrated in cold methanol for 5 min and cold acetone for 2 min, and permeabilized with 0.2% Triton X-100 for 10 min. Cells were washed first with 0.2% Tween and 0.2% Nonidet P-40 in PBS and then with 2 mM MgCl2 in PBS and were further preincubated with 1% normal goat serum in PBS for 30 min at room temperature. Cells were then successively incubated with primary and secondary antibodies for 1 h each at room temperature, followed by the two washing steps described above. After quick staining with DAPI (4',6-diamidino-2-phenylindole), coverslips were dried with ethanol and mounted onto glass slides in the presence of Elvanol (polyvinyl alcohol; molecular weight, 77,000 to 79,000; ICN Biomedicals Inc.). Samples were examined with a conventional epifluorescence microscope (Leica DMRBE; x63 objective with immersion oil). Images were captured using a Hamamatsu Orca digital camera and processed using Openlab 2 (Improvision) and Micrografx Picture Publisher 7a software. Some samples were analyzed by a Leica TCS SP laser scanning confocal device fitted to a Leica IMRBE microscope. In the latter case, Oregon green 488 fluorochrome was excited by the 488-nm excitation line of an argon-krypton laser and detected using a 500- to 540-nm emission window. Single optical sections of about 0.5 µm in depth were performed at the level of the cytoplasm and the nucleus, and images were recorded using Leica TCS-NT version 1 and Adobe Photoshop 4.4 software.
Measurement of cell growth, virus release, and VP protein accumulation. A9 cells were seeded at 2 x 105 cells per 10-cm-diameter dish and infected with wild-type MVMp (MOI = 10 RU/cell) or the MVM-NES22 mutant (MOI = 30 RU/cell). At daily intervals postinfection, cells were harvested and counted. Viable cell numbers were determined by trypan blue exclusion. At each time point, virus was recovered from supernatants after a clear spin and analyzed by plaque assay on A9 indicator cells to determine virus production. At each time point, cells were lysed in 1 ml of RIPA buffer (10 mM Tris [pH 7.5], 150 mM NaCl, 1 mM EDTA, 1% Nonidet P-40, 0.5% sodium deoxycholate, 0.1% SDS) containing a mixture of proteinase inhibitors (Complete; Roche Molecular Biochemicals), proteins were harvested after a clear spin, and equivalent volumes of protein extracts were further analyzed by immunoblotting.
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To test whether the NS2-Crm1 complex plays a critical role during parvovirus replication, we introduced mutations affecting the NS2 NES site into an infectious clone of MVMp. Substitutions of alanine residues for the critical hydrophobic amino acids have been shown to disrupt NES function in a number of proteins, including HIV-1 Rev (55), human T-cell lymphotropic virus Rex (9), or PKI (89). We indeed observed that by mutating Phe86, Leu89, or Ile91 to alanine in the context of the full-length NS2 protein, the interaction between NS2 and Crm1 was abolished (Bodendorf et al., Virologie 4:179, 2000). However, in the context of the full-length MVM genome, these mutations will also affect the NS1 coding sequence. Furthermore, it should be stated that Met82 and Ile91 cannot be replaced by alanine or another nonhydrophobic amino acid without affecting NS1 as well. Therefore, the two following MVM-NES(-) mutant genomic clones were generated: pdBMV-NES21, which encodes NS2 proteins with substitutions of Gln and Arg for the amino acids Phe86 and Gly87, respectively, and pdBMV-NES22, which expresses NS2 proteins with substitutions of Gln and Ser for the amino acids Leu89 and Thr90, respectively (Fig. 1C). Both mutants were designed so that the primary sequence of the NS2 NES site is modified without altering the sequence of the major nonstructural protein NS1 (Fig. 1B). Although the NES21 and NES22 mutations were introduced in the vicinity of the NS2 large intron splice acceptor, none of them was expected to dramatically impair the splicing of NS2 mRNAs according to a previous report which described the viral elements required for proper MVM pre-mRNA processing (37). In agreement with this expectation, accumulation of NS2 as measured by Western blotting (see below; Fig. 2) was comparable in cells transfected with wild-type and NES mutant genomic clones.
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FIG. 2. The NES21 and NES22 substitutions within the NS2 NES site prevent the interaction of NS2 with Crm1 in vivo. 293T cells were transfected with pdBMVp, pdBMV-NES21, pdBMV-NES22, or no DNA (mock) and further incubated for 48 h. (A) Whole-cell lysates were first immunoprecipitated with an NS2-specific antiserum and then immunoblotted with anti-Crm1 antibodies. As controls, nonimmunoprecipitated lysates (10% of the amount used for panel A) were analyzed by immunoblotting with either the anti-Crm1 (B) or anti-NS2 (C) antibodies. Proteins were separated on SDS-containing bipartite 8 and 12% polyacrylamide gels. Immunoblots were visualized by chemiluminescence.
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It is worth noting that both mutant proteins were still able to interact with members of the 14-3-3 protein family as efficiently as wild-type NS2 (data not shown), as was previously demonstrated in the case of wild-type MVMp-infected cell extracts (11). This result suggests that the 2-aa substitutions introduced into the NS2 NES site did not drastically modify the conformation of the viral protein. Since the interaction with 14-3-3 proteins requires a phosphorylated amino acid at the 14-3-3 binding site in the target protein (60), our data also indicated that phosphorylation of at least one critical NS2 site was not affected in either of the NES-modified NS2 proteins. Yet, minor alterations in NS2 structure or other posttranslational modifications cannot be excluded, as both NS2-NES21 and NS2-NES22 proteins migrated somewhat slower than wild-type NS2 in SDS-polyacrylamide gels (Fig. 2C, lanes 3 and 4 versus lane 2).
NS2-Crm1 interaction is not required for MVM protein expression in human and mouse cells. We then tested the ability of the mutated MVM genomes to properly express viral proteins, including the NES-modified NS2 proteins, in human as well as mouse cell lines. Viral proteins were immunoprecipitated from [35S]methionine-cysteine-labeled cells that had been previously transfected with either wild-type or MVM-NES(-) mutant genomic clones. As illustrated in Fig. 3A, the MVM-NES22 mutant genome was able to support the synthesis of NES-modified NS2 proteins in both human 293T (lane 4) and mouse A9 (lane 8) cells. As expected, NS2-NES22 mutant proteins were not able to interact with the nuclear export receptor Crm1, although they could still bind to members of the 14-3-3 protein family. The NES22 substitutions did not appear to interfere with the expression of the other viral polypeptides, as NS1, VP1, and VP2 proteins were produced with similar efficiency upon transfection of human or mouse cells with either wild-type or NES22-mutated DNA clones (Fig. 3B and C). The lack of a significant effect of NES22 substitutions L89Q and T90S on parvovirus gene expression was confirmed by Western blotting assays (data not shown). Altogether, our results indicate that NS2 interaction with the nuclear export factor Crm1 is not required for an efficient production of the virus-encoded proteins.
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FIG. 3. Effect of the NES21 and NES22 substitutions within the NS2 NES site on viral protein synthesis. Lysates of 35S-labeled human 293T and mouse A9 cells, transfected with pdBMVp, pdBMV-NES21, pdBMV-NES22, or no DNA (mock), were precipitated with antisera directed against the NS2 C terminus (A), the NS1 C terminus (B), or the VP1 and VP2 C termini (C). The autoradiograms show immunoprecipitated proteins after separation by electrophoresis through SDS-containing bipartite 8 and 12% polyacrylamide gels. The positions of Crm1 (110 kDa), 14-3-3 (30 and 32 kDa), NS2 (ca. 25 kDa), NS1 (83 kDa), VP1 (83 kDa), and VP2 (65 kDa) proteins are indicated. Molecular masses of prestained standard proteins are shown on the right.
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During the parvovirus replication cycle, the viral nonstructural proteins NS1 and NS2 are expressed after conversion of the input single-stranded genome into a double-stranded transcription template, driving the subsequent steps of viral DNA amplification, expression, and possibly packaging. By analogy with other viral regulatory proteins such as the HIV-1 Rev protein (8, 31, 54), the NS2 proteins may conceivably contribute, through their association with Crm1, to the export of viral mRNAs to the cytoplasm and the ensuing synthesis of viral proteins. The phenotype of the MVM-NES(-) mutant genomic clones described above argued against this possibility and led us to analyze other events of the parvovirus life cycle.
The MVM-NES22 genomic clone is able to generate progeny viruses in transfected human and mouse cells. It was previously described that expression of MVM NS2 protein is not essential for the production of infectious virions in human cells but is absolutely required for a productive infection of mouse cells (17, 61, 62). Given the similar proficiency in the production of at least NS1, VP1, and VP2 proteins, wild-type and MVM-NES21 or MVM-NES22 genomic clones were compared for their ability to give rise to virus production in human and mouse cells. To this end, human 293T and mouse A9 cells were transfected with the respective molecular clones and further incubated for 6 days, with a 1:10 dilution performed at day 2 posttransfection. At this time cytopathic effects became apparent in the wild-type but not MVM-NES(-) DNA-transfected cultures. Virus was recovered from all transfected cell cultures by repeated freezing and thawing cycles and was titered by DNA replication centers and plaque assays, using A9 or NB-324K indicator cell lines. Similar results were obtained with both cell lines and are illustrated in Fig. 4 for A9 indicator cells.
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FIG. 4. The MVM-NES22 genomic clone generates the production of infectious virions in human 293T and mouse A9 cells. Cells were transfected with either pdBMVp or pdBMV-NES22 plasmid DNA and viruses were harvested in the same final volume 6 days after transfection. Virus stocks were used to infect A9 indicator cells, and virus yields were determined by performing either hybridization assays, for which titers are given in RU per milliliter of crude extract (A), or plaque assays, for which titers are given in PFU per milliliter of crude extract (B). White bars, virus stocks generated in A9 cells; black bars, virus stocks generated in 293T cells. (C) Typical size appearance of plaques obtained upon infection of A9 indicator cells with viruses generated in A9 cells. Similar patterns were observed upon infection of A9 indicator cells with viruses generated in 293T cells (data not shown). wt, wild-type MVMp; NES22, MVM-NES22 mutant.
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In marked contrast, the MVM-NES21 mutant genomic clone failed to support infectious virion production not only in mouse A9 but also human 293T cell cultures, even 8, 11, and 17 days after transfection as measured by plaque assay using either A9 or NB-324K as indicator cell lines (data not shown). This phenotype of the MVM-NES21 mutant, which can be distinguished from both the MVM-NES22 and MVM-NS2null mutant phenotypes (17, 61, 62), might be ascribed to secondary effects of NS2 related to changes not only in the expression (see above) but also in the quality of the NS2 products.
Altogether, our results led us to focus on the MVM-NES22 mutant to further analyze the consequences of the disruption of NS2-Crm1 interaction on the parvovirus replication cycle. To this end, wild-type MVMp and MVM-NES22 mutant virus stocks were prepared in A9 cells as described above, except that each virus was collected at the appearance of cytopathic effects. The ratio of full particles to replicative centers was determined for both the wild-type and mutant virus stocks by hybridization measurement of ssDNA in proteinase K-treated samples and of viral DNA-amplifying cells. This ratio was somewhat (about threefold) higher for the mutant virus, indicating a slightly lower infectivity of the MVM-NES22 mutant than of the wild-type virus (data not shown). However, it is unlikely that the lower yields and smaller plaques generated from MVM-NES22 could only be ascribed to the lower infectivity of the mutant. These results prompted us to carry out further experiments to analyze MVM-NES22 mutant virus production, in particular in relation to nuclear export processes.
Deficiency of NS2 nuclear export in MVM-NES22 mutant-infected mouse cells. It was first ascertained that the viruses produced in cells transfected with MVM-NES22 mutant genomic DNA were not revertants and encoded NS2 proteins displaying the original NES(-) phenotype. A9 cells were infected with either wild-type or MVM-NES22 mutant virions, labeled de novo with [35S]methionine-cysteine, and processed for NS2 protein immunoprecipitation using NS2-specific antibodies. As illustrated in Fig. 5, the NS2 proteins produced by MVM-NES22 viruses were unable to bind to Crm1 while still interacting with 14-3-3 proteins (lane 3), whereas wild-type NS2 proteins precipitated both Crm1 and 14-3-3 proteins (lane 2). Furthermore, the NS2 proteins from MVM-NES22 mutant-infected cells showed the mobility shift noticed above for NS2 produced in cells transfected with the MVM-NES22 mutant genomic clone (Fig. 2). Therefore, MVM-NES22 viruses appeared to encode the expected mutant form of NS2.
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FIG. 5. NS2 proteins expressed from the MVM-NES22 mutant exhibit an NES(-) phenotype. (A) Coimmunoprecipitation assays from infected mouse cell extracts. Lysates of 35S-labeled A9 cells infected with wild-type MVMp (MOI = 10 RU/cell), MVM-NES22 mutant (MOI = 30 RU/cell), or no virus were immunoprecipitated with an NS2-specific antiserum. The autoradiogram shows immunoprecipitated proteins after separation by electrophoresis through an SDS-containing bipartite 8 and 12% polyacrylamide gel. (B) Subcellular distribution of wild-type and NES22-modified NS2 proteins. A9 cells were infected as described above and further analyzed by indirect immunofluorescence assay 24 h after infection, using an NS2-specific antiserum. Cells were examined by either epifluorescence (a and c) or confocal (b and d) microscopy. mock, no virus; wt, wild-type MVMp; NES22, MVM-NES22 mutant.
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Retention of MVM-NES22 progeny particles in the nucleus of infected mouse cells. Given the facts that infection of mouse cells with the MVM-NES22 mutant, on the one hand, led to a predominantly nuclear localization of the NES-modified NS2 proteins and, on the other hand, gave rise to the formation of tiny plaques, it was tempting to speculate that abolition of the NS2-Crm1 interaction may affect the intracellular distribution of other viral products. The subcellular localization of the VP proteins and capsids was determined in wild-type MVMp and MVM-NES22 mutant virus-infected cells by indirect immunofluorescence using specific polyclonal antibodies (VP2-Pas) or MAbs. The polyclonal antiserum VP2-Pas was previously shown to be able to recognize both VP1 and VP2 capsid proteins and, to a lesser extent, assembled capsids (Hernando and Almendral, manuscript in preparation), while the MAb B7 can only detect assembled capsids (53). After infection with wild-type MVMp or the MVM-NES22 mutant, mouse A9 cells were incubated for various times and further processed for immunofluorescence staining. In agreement with the above-mentioned immunoprecipitation experiments (Fig. 3), a similar proportion of cells in cultures infected with either virus was positive for the presence of structural proteins and capsids (data not shown). In contrast, wild-type MVMp and MVM-NES22 virus-infected cells could be distinguished by the intracellular distribution of VP proteins and capsids.
A9 cells infected with wild-type MVMp showed both cytoplasmic and nuclear staining for VP proteins, which became predominantly nuclear 48 h after infection (Fig. 6A, panels a and b, and 6B, top left). Assembled particles could be detected almost exclusively in the nuclei of infected cells 24 h after infection (Fig. 6A, panel e), while at later times, the capsid-specific antibodies gave rise to additional punctate signals in the cytoplasm and at the cell periphery (Fig. 6A, panel f, and 6B, bottom left). Altogether, these results were consistent with the current view that upon infection with the wild-type virus, de novo-synthesized VP proteins migrate to the nucleus, in which capsid assembly takes place (53, 73, 85), followed by virus release from the cells and further reinfection of the surrounding cells (69, 76). It is worth noting that in neuraminidase-treated cultures, cells that were exclusively labeled in their cytoplasm could not be detected, indicating that second rounds of infection were prevented. However, a small fraction of cells showing capsid staining in the nucleus were also able to exhibit a cytoplasmic capsid-specific signal at 48 h postinfection (Fig. 6B, bottom left), although this cytoplasmic labeling essentially appeared diffuse rather than punctate (data not shown). These data suggest that at least part of the cytoplasmic signal may correspond to nucleus-released rather than reinfecting virions.
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FIG. 6. MVM-NES22 particles are retained in the nucleus of infected mouse cells. (A) A9 cells, infected with either wild-type MVMp (MOI = 10 RU/cell) or the MVM-NES22 mutant (MOI = 30 RU/cell), were analyzed by indirect immunofluorescence assay at 24 and 48 h postinfection, using antisera directed against the structural proteins (anti-VPs) or intact capsids (anti-capsids), and were examined by epifluorescence microscopy. The images shown are representative of the most abundant phenotypes found in the wild-type and mutant infected cells. Panels: a, VP staining in both the nucleus and cytoplasm; b and c, VP staining predominantly in the nucleus; d, VP staining in the nucleus only; e, g, and h, capsid staining in the nucleus only; f, capsid staining in both the nucleus and cytoplasm. Nuclei were visualized within each field by staining the DNA with DAPI. (B) Subcellular distribution of the structural protein (top) and capsid (bottom) antigens. Cells were treated as for panel A except for the addition of neuraminidase 4 h after virus inoculation to prevent secondary rounds of infection. The values are the percentages of at least 90 immunofluorescence-positive cells counted 48 h after infection. Scored cells were classified into four categories as follows: immunofluorescent staining that was exclusively nuclear (N), mainly nuclear (N > C), comparably nuclear and cytoplasmic (N = C), and at the periphery of infected cells (extracellular). wt, wild-type MVMp; NES22, MVM-NES22 mutant.
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Delayed virus release and cell death after infection with the MVM-NES22 mutant. The impaired export of progeny MVM-NES22 virions out of infected cell nuclei led us to compare the mutant and wild-type viruses for other late events in the parvovirus life cycle, namely cell death, particle release, and ensuing secondary infections. To this end, asynchronous A9 cell cultures were infected with wild-type MVMp or the MVM-NES22 mutant and were assayed in parallel for cell growth, virus release in the medium, and further internalization at daily intervals postinfection.
As shown in Fig. 7B, increasing amounts of infectious particles were detected in the medium of wild-type MVMp-infected cultures until day 4 postinfection, at which time virus production reached a plateau. As expected, the continuous virus production taking place during the first 4 days postinfection was accompanied by a drastic decrease in the viability of the wild-type MVMp-infected cells compared with that of mock-treated ones, resulting in a lack of significant growth of infected cultures (Fig. 7A). This growth inhibition was the result of repeated infection cycles within the cell cultures, as evidenced by the increased accumulation of VP3 polypeptides, besides the VP1 and VP2 capsid proteins, in whole-cell extracts from infected cells (Fig. 7C, upper panel).
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FIG. 7. Delayed cell killing, virus release, and subsequent internalization in MVM-NES22 mutant-infected mouse cell cultures. (A) Cell survival kinetics of A9 cell cultures infected with wild-type MVMp (MOI = 10 RU/cell), the MVM-NES22 mutant (MOI = 30 RU/cell), or no virus. The number of viable cells in each culture was determined by multiplying the total number of cells by the percentage of living cells assayed by trypan blue exclusion. (B) Time course of virion release in infected mouse cell cultures. A9 cells were infected with wild-type MVMp or the MVM-NES22 mutant as mentioned for panel A. The amounts of infectious particles released in the medium over time were determined by plaque assays using A9 indicator cells and were expressed as total PFU after subtraction of the day 0 value. (C) Time course appearance of VP1, VP2, and VP3 proteins in infected mouse cell extracts. A9 cells were infected with either wild-type MVMp or the MVM-NES22 mutant as mentioned for panel A. Whole-cell lysates, prepared at days 1 to 6 after infection, were analyzed by immunoblotting with an antiserum directed against the common C terminus of the VP polypeptides following protein separation on SDS-containing 10% polyacrylamide gels. Immunoblots were visualized by chemiluminescence. The experiments represented in all three panels were done in parallel. mock, no virus; wt, wild-type MVMp; NES22, MVM-NES22 mutant; p.i., postinfection.
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Altogether, these data indicate that the association between NS2 and Crm1 plays an important role in MVMp propagation, in particular at later stages of the viral replication cycle. This phenotype distinguishes MVM-NES22 from the other NS2 mutants described so far. It has been previously reported that various MVM-NS2 mutants encoding either C-terminally modified or no NS2 proteins were unable to productively replicate in mouse cells as a result of major defects in both viral DNA replication and capsid assembly (14, 17, 61, 62). In addition, no C-terminally modified or truncated NS2 proteins could be detected in mutant virus-infected mouse cells, although some of these proteins were expressed to wild-type levels in transformed human or rat cells (11, 17, 61). The MVM-NES22 mutant described in this study shows a phenotype that is clearly different from the one exhibited by MVM-NS2null mutants, since it proved able to both express mutated NS2 proteins and generate fully infectious particles in mouse cells. In proliferating mouse fibroblasts infected with MVMp, the viral NS2 proteins are localized in the cytoplasmic and, to a much lesser extent, nuclear compartments (19). As shown in this study, disruption of the NS2 NES site leads to both an increased nuclear accumulation of the viral NS2 proteins and a nuclear retention of fully assembled MVMp capsids in infected mouse cells. It therefore appears that efficient nuclear exit of the virions depends on NS2 activities linked to either the cytoplasmic localization of the protein or its transport out of the nucleus. Whether nuclear accumulation of NS2 interferes with other steps in the parvovirus replication cycle cannot be excluded either. Indeed, a recent report by Miller and Pintel (57) shows that abolishment of NS2-Crm1 interaction not only affects the nuclear export of MVM infectious particles but also causes a significant reduction in the accumulation of ssDNA in infected mouse cells. According to this report, the primary defect in the Crm1 interaction mutant is most likely at the level of capsid egress from the nucleus and the authors proposed a possible feedback mechanism, direct or indirect, between the nuclear exit of full virions and continued production of progeny ssDNA (57).
In the present study, we showed that the release of MVM-NES22 virions from the nucleus of infected cells was delayed, suggesting that the particles were only temporarily blocked in the nuclear compartment. The mechanisms by which MVM particles are released from infected cells remain enigmatic. Parvovirus release was previously considered to result from the degeneration of both the nucleus and the cytoplasm, leading to the disruption of the plasma membrane (69, 76). Ultra-histological studies, however, reported the presence of virus particles within the cytoplasm in the vicinity of nuclear pores at late phases of infection, suggesting that nuclear exit of progeny virions might result from an active transport process. On the other hand, the presence of virus in the cytoplasm could also reflect a passive release of progeny virions from a degenerating nucleus (75). Nonetheless, active and passive mechanisms for parvovirus nuclear exit are both compatible with virion release into the culture medium following lysis of infected cells. Such a cytoplasmic passage prior to cell lysis to release nonenveloped virus in the culture medium has been recently demonstrated for adenovirus particles (68). Although we cannot exclude the fact that nuclear degeneration is delayed in MVM-NES(-)-infected cells, the nuclear retention of mutant virions reported in this study may reflect a defective transport of MVM-NES(-) particles as a consequence of the nuclear accumulation of NES-modified NS2 proteins. The late egress of the mutant may then be related to the fact that a small but significant proportion of NES-modified NS2 proteins was still localized in the cytoplasm. This cytoplasmic subpopulation of NS2 proteins may either fail to transit through the nucleus or be released from the nucleus through an NES-independent pathway. It is noteworthy that NS2 proteins are small proteins of about 25 kDa and could therefore go in and out of the nucleus by passive diffusion through the nuclear membrane, since the cutoff size for facilitated transport versus diffusion across the nuclear pore complex is considered to be 40 to 50 kDa (25). Assuming that the nuclear export of NS2 controls virus exit from the nucleus, passive diffusion of NS2 alone or bound to other small molecules through the nuclear membrane may participate in the release of virions, albeit at a lower rate than with active NS2 transport.
The reason why suppression of the Crm1-mediated export of NS2 out of the nucleus impairs the nuclear egress of infectious virions is currently a matter of speculation. As stated above, one possible explanation would be that NS2 controls the latter process by acting in the cytoplasm, for instance, by modulating posttranslational modifications of the VP proteins prior to their import in the nucleus. On the other hand, NS2 may work as cargo to coexport from the nucleus either the viral particles themselves or factors that interfere with the nuclear release of assembled virions. The MVMp capsid is composed of 60 protein subunits, 90% of which consist of VP2 polypeptides and 10% of which consist of VP1 polypeptides (82). It has also been shown that VP2 is necessary and sufficient for the encapsidation of virus progeny ssDNA (85). Parvovirus capsid formation is a multistep process which is still not fully understood. The two capsid proteins VP1 (83 kDa) and VP2 (64 kDa) are first synthesized in the cytoplasm of infected cells, where they cooperatively interact to further migrate to the nucleus (53). In the nucleus, VP1- and VP2-containing complexes are assembled into icosahedral virions which are able to package single-stranded viral DNA (2, 24, 85) and are released from the infected cells, most likely after passage through the cytoplasm (69, 75, 76). In full virions, the N terminus (ca. 20 to 25 amino acids) of some VP2 molecules becomes exposed at the particle surface and further cleaved during release and/or subsequent uptake of infectious particles into the host cells, leading to the appearance of VP3 (60 kDa) (2, 73, 83). The nuclear export of NS2 might be coupled with that of assembled virions in a direct way. It should be stated, however, that attempts to detect interactions between the viral NS2 and VP2 proteins using the yeast two-hybrid system were not successful (U. Bodendorf and N. Salomé, unpublished results). In addition, no interaction between NS2 and fully assembled capsids has been described so far. Alternatively, NS2 may act indirectly, for instance, by participating in the modification of VP components before or after their assembly into capsids.
Interestingly, it has recently been reported that phosphorylation of the VP2 N terminus plays an important role in the parvovirus life cycle. Indeed, MVMp mutants lacking VP2 N-terminal phosphorylation were found to form tiny plaques on human indicator cells (56), which appeared to result from an impaired release of mutant virions from infected cells (B. Maroto and J. M. Almendral, Abstr. VIIIth Parvovirus Workshop, p. 32, 2000). This phenotype is similar to the one previously described for MVMp-NS2null mutants in human cells (17) as well as to the one observed here for the MVMp-NES(-) mutant. Altogether, these data lead us to speculate that the viral NS2 proteins contribute to the regulation of VP2 phosphorylation. The dependence of this effect may tentatively be assigned to the fact that the VP2 phosphorylation events concerned take place in the cytoplasm prior to the migration of VP complexes into the nucleus and/or require the NS2-mediated intracellular delocalization of a kinase, phosphatase, or associated regulating factor(s).
Several steps of the parvovirus replication cycle, including viral DNA amplification, capsid assembly, and viral ssDNA packaging, are taking place in the nucleus of infected cells. It has been recently demonstrated that MVM DNA replication proceeds in specific virus-induced nuclear structures termed autonomous parvovirus-associated replication (APAR) bodies (6). These APAR bodies might also correspond to active sites of de novo capsid assembly and/or viral ssDNA packaging (93). It is relevant to note that the generation of MVM ssDNA is tightly connected to the availability of assembled MVM capsids (22, 24). In mouse cells, MVM NS2 proteins are needed for capsid assembly and generation of progeny ssDNA but not for the synthesis of the viral capsid proteins VP1 and VP2 and their subsequent migration to the nucleus, most likely as preassembled particles (17, 53). Interestingly, nuclear accumulation of NS2 does not dramatically impair assembly of capsid proteins into infectious particles, as demonstrated in the present study. Therefore, one can speculate that the NS2 function(s) would be to improve the interaction between (pre)assembled capsids and viral DNA cleavage and packaging machinery. This could be achieved by modulating cellular or viral factors that are involved in the nuclear formation or stabilization of MVM particles and/or in the positioning of these particles in the nuclear parvovirus replication centers, i.e., the APAR bodies. This model would be consistent with a nuclear localization of the NS2 proteins and might explain why NS2-NES(-) mutant proteins are still efficient for progeny virion production. On the other hand, either cytoplasmic NS2 or NS2 transport through the nuclear envelope seems to be required to facilitate the release of infectious MVM particles. It is worth noting that a role in proper localization of assembled capsids and in viral DNA cleavage and packaging reactions has been proposed for other viral regulatory proteins, including the herpes simplex virus type 1 UL32 gene product (48). The molecular mechanisms that are behind NS2 activities in both virion formation and release still remain to be elucidated. However, NS2 is probably acting indirectly, since specific cellular determinants, provided, for example, in transformed human cells, can complement for NS2 function(s) although to a limited extent, as suggested by a delayed release of MVM-NS2null mutant and a higher nuclear accumulation of MVM-NES(-) mutant in infected NB-324K cells (17, 57).
Some members of the parvovirus family, including MVMp and H-1 virus, displayed interesting oncosuppressive properties which, together with the ability of these viruses to cause clinically asymptomatic infections, point to the use of these agents as vectors for the transfer and preferential expression of anticancer genes in tumors (5, 16, 26). Indeed, several laboratories including ours have developed H-1 and MVMp-based vectors in which the early P4 promoter and the sequence encoding the NS1 protein have been retained but the genes coding for the capsid proteins have been partially deleted and replaced by different transgenes (30, 40, 70, 90). At present, a limiting step to the assessment of these vectors lies in the relatively low titers of the recombinant virus stocks obtained. The present work shows that NS2 needs to be considered among the parameters that determine the efficiency of parvovirus production. Therefore, a better knowledge of NS2 functioning during the late steps of the parvovirus life cycle will be of great interest for optimizing parvovirus-based vector production and infectivity.
V.E. was supported by a fellowship from the Deutsches Krebsforschungszentrum and L.D. was supported first by an Alexander von Humboldt fellowship and further by a Marie Curie fellowship from the European Community.
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