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Journal of Virology, September 2002, p. 9218-9224, Vol. 76, No. 18
0022-538X/02/$04.00+0 DOI: 10.1128/JVI.76.18.9218-9224.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Institut für Virologie, Tierärztliche Hochschule Hannover, D-30559 Hannover,1 Max-von-Pettenkofer-Insitut and Genzentrum der Ludwig-Maximillians-Universität, D-81377 Munich, Germany2
Received 22 April 2002/ Accepted 17 June 2002
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The envelope of the respiratory syncytial viruses (RSV) contains three glycoproteins: the attachment protein G, the small hydrophobic protein SH, and the fusion protein F. Several studies indicate that both the G and the SH proteins are dispensable for virus replication in cell culture but may have some accessory function in the host (4, 18, 19, 35, 39). The F protein mediates fusion between the viral and cellular membrane and is therefore essential for virus replication. Since fusion does not require low pH, cells infected with RSV can fuse with adjacent cells resulting in multinucleated syncytia. Syncytium formation can also be observed with cells transfected with the F gene, although coexpression of F together with G and/or SH protein has been reported to enhance fusion activity (16, 29). Recent studies suggest that certain glycosaminoglycans of the cell surface are required for HRSV infection (13, 14, 23, 27). The G protein, as well as the F protein, have been demonstrated to bind to these carbohydrate structures (10, 11, 18, 23).
The primary sequence of the F protein from different serotypes of HRSV and BRSV is highly conserved but shows only little homology with other paramyxovirus fusion proteins. However, with respect to size, locations of hydrophobic domains, heptad repeats, and cysteine residues the RSV F protein shares many structural features with other paramyxovirus fusion proteins. A property that is even more common and also found with other virus families is the synthesis of the fusion protein as an inactive precursor F0 that has to be proteolytically cleaved to become fusion active (21, 22). This posttranslational modification results in the exposition of a hydrophobic fusion peptide at the N terminus of the membrane-anchored fragment. The fusion peptide is supposed to play a crucial role in the fusion process. The majority of viral fusion proteins, including the RSV F proteins, contain a multibasic cleavage motif of the consensus sequence RX(K/R)R immediately upstream of the fusion peptide. This sequence is recognized by the ubiquitous subtilisin-like endoprotease furin of the trans-Golgi network (21, 22). A few viruses are not activated by furin. Their fusion proteins usually contain a monobasic cleavage site that is cleaved by trypsin-like proteases. The type of the cleavage motif has been shown to be an important determinant for virus pathogenicity (21). A unique feature of the RSV F proteins is the cleavage of F0 at two conserved furin consensus sequences, RAR/KR109 (FCS-2) and KKRKRR136 (FCS-1), resulting in the generation of three proteolytic fragments, the large membrane-anchored subunit F1 with the hydrophobic fusion peptide at its N terminus, the small subunit F2 which is linked to F1 via a disulfide bridge, and a small peptide composed of 27 amino acids (pep27) originally located between the two cleavage sites (12, 41). All three products have been shown to contain N-linked oligosaccharide side chains (40, 41). Analysis of the two cleavage sites by site-directed mutagenesis revealed that efficient syncytium formation in transfected cells requires cleavage at both sites (12, 41). Moreover, complete cleavage at both sites was shown to be associated with a conformational change in the molecule (12). In the present study, we made use of reverse genetics to analyze the role of the second furin motif and the intervening peptide in proteolytic activation of BRSV.
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Plasmid construction.
The BRSV (strain ATue51908) antigenomic plasmid was described previously (3). The unique restriction sites for BstEII and NheI in this plasmid define a 2,700-bp fragment containing the M2 and almost the whole F gene lacking only the first 130 nucleotides of its open reading frame. This fragment was cloned into a modified pCR3.1 vector (Invitrogen) containing a new single BstEII restriction site. The single EcoRI restriction site of pCR3.1 was removed by the cloning step. The resulting plasmid was designated BRSV-F/M2-cassette. The BRSV fusion protein mutants bF:R106N/K108N and bF:K108N/R109N assembled in the pTM1 expression vector have been previously described (41). A BstEII/EcoRI-fragment of 540 bp containing the mutations was used to replace the corresponding region in the BRSV-F/M2 cassette. The mutant bF:R106S/K108N/R109N was generated in the same vector by using an overlapping PCR technique. Two PCR products were amplified from the bF:K108N/R109N template by using Pfu DNA polymerase (Promega). Nucleotides 1 to 327 of the F open reading frame were amplified by using forward primer bF-S(1-27) (5'-AATCCATGGCGACAACAACCATGAGGATGATC; start codon underlined) and a reverse mutagenesis primer (5'-CGTTGTTTGCTGAACTGAAGGAGG). Nucleotides 304 to 744 of the F gene were amplified by using a forward mutagenesis primer (5'-GCCTCCTTCAGTTCAGCAAACAACGGG) and reverse primer bF-AS(724-744) (5'-ACTGAGAGGTGTGGTAATACC). The two PCR products were separated by agarose gel electrophoresis and purified by gel extraction. Equimolar amounts of the purified fragments were combined, heated for 2 min at 95°C for denaturation, and annealed to each other at 60°C for 30 s. Oligonucleotide-primed DNA synthesis with Pfu DNA polymerase resulted in a completely double-stranded DNA fragment that was amplified by PCR after addition of the bF-S(1-27) and bF-AS(724-744) primers. The product was digested with BstEII and EcoRI and used to replace the corresponding fragment in the BRSV-F/M2 cassette. The whole region that was replaced was sequenced to confirm the nucleotide exchanges. The F protein deletion mutant bF:
106-130 lacking nucleotides 316 to 390 was assembled in a similar way by using the oligonucleotides 5'-GAACCGGCCTCCTTCAGTAAGAAGAGAAAAAGGAGATTTTTAGGATTC and 5'-TCTCCTTTTTCTCTTCTTACTGAAGGAGGCCGGTTCATTTTGCATAAG as forward and reverse mutagenesis primers, respectively. Finally, each of the BstEII/NheI fragments of the parental and mutated BRSV-F/M2 cassettes were used to replace the corresponding region in the BRSV antigenomic plasmid.
Recovery of recombinant BRSV. Recombinant BRSVs were rescued from the supernatant of BSR-T7/5 cells transfected with the antigenomic plasmid, together with four plasmids directing the expression of the viral polymerase complex (3). The viruses were propagated on PT-11 cells. At 5 to 6 days after infection, when the cytophatic effect became obvious, the supernatants were taken; adjusted to 50 mM HEPES (pH 7.5), 0.1 MgSO4, and 10% fetal calf serum; and subjected to low-speed centrifugation to remove cell debris. The supernatants were divided into aliquots, flash-frozen in liquid nitrogen, and stored at -80°C. Low-passage stocks (maximum of four passages) were used throughout all experiments. The identity of the recombinant viruses was verified by reverse transcription-PCR (RT-PCR; see below) and DNA sequencing of the PCR products.
Growth kinetics and virus titration. Multistep replication of the recombinant BRSVs was analyzed by using PT-11 and Vero cells. Confluent cell monolayers seeded the day before in six-well plates were inoculated at 37°C for 3 h with each virus at a multiplicity of infection (MOI) of 0.1. Four wells were infected in parallel with each virus. After adsorption, the inoculum was removed and the cells were washed three times with medium before the addition of 2.5 ml of medium (without fetal calf serum). Two wells of each infection received medium containing 0.5 µg of acetylated trypsin (Sigma)/ml. At the indicated times, aliquots of 250 µl were taken and replaced by the same volume of fresh medium. The aliquots were adjusted to 0.1 M MgSO4, 50 mM HEPES (pH 7.5), and 10% fetal calf serum; flash-frozen in liquid nitrogen; and stored at -80°C until titration.
The viruses were titrated in duplicate on Vero cells grown in 24-well dishes to 90% confluence. The cells were inoculated with 10-fold dilutions of each virus for 3 h at 37°C and overlaid with medium containing 2% fetal calf serum and 0.9% methylcellulose (Sigma). After incubation for 3 days, the medium was removed and the cells were washed twice with phosphate-buffered saline (PBS) and then fixed with 3% paraformaldehyde for 20 min at room temperature. Excess paraformaldehyde was quenched with 0.1 M glycine in PBS for 5 min. The cells were permeabilized with 0.2% Triton X-100 in PBS for 5 min at room temperature and then incubated for 90 min at room temperature with a monoclonal antibody directed to the RSV matrix protein (monoclonal antibody 18G6D1; diluted 1:40 in PBS). The cells were washed three times with PBS and incubated for 1 h at room temperature with a horseradish peroxidase-linked goat antiserum directed to mouse immunoglobulin (1:300 in PBS). After three wash steps, the cells were incubated for 10 min with AEC peroxidase substrate (1.7 mM 3-amino-9-ethylcarbazole and 0.1% H2O2 in 50 mM sodium acetate buffer [pH 5.0]). Immunostained cells were counted under an inverse light microscope.
RT-PCR. Total RNA was prepared from Vero cells 2 days after infection (RNeasy [Qiagen]) and reverse transcribed by using Expand reverse transcriptase (Roche Diagnostics) and random hexamers for priming. Nucleotides 1 to 744 of the F gene were amplified from the cDNA by PCR with oligonucleotides bF-S(1-27) and bF-AS(724-744) and according to the following protocol: initial denaturation at 94°C for 1.5 min, followed by 35 two-step cycles (each composed of denaturation at 94°C for 30 s and annealing-elongation at 60°C for 30 s), with a final elongation step at 72°C for 7 min. The PCR products were separated on a 2% agarose gel, stained with ethidium bromide, and analyzed on a UV transluminator.
Radioimmunoprecipitation. Confluent monolayers of PT-11 cells grown on 35-mm dishes (ca. 106 cells per dish) were inoculated with 250 µl of serum-free EMEM containing rBRSV at an MOI of 0.1. After 2 h of adsorption, the inoculum was replaced by 2.5 ml of EMEM containing 5% fetal calf serum. At 40 h postinfection, the cells were washed twice with PBS, starved for 1 h in methionine-cysteine-deficient EMEM, and then incubated for 1 h with 250 µl of the same medium supplemented with 50 µCi of [35S]methionine-[35S]cysteine (Tran35S-label [ICN]). Immunoprecipitation of the F protein from cell lysates was performed as recently described (41).
Western blot. Confluent monolayers of PT-11 cells grown in 25-cm2 flasks were inoculated in duplicate with the indicated recombinant BRSVs (MOI of 0.1) for 3 h at 37°C. After removal of the inoculum, the cells were maintained in medium with 10% fetal calf serum for 24 h at 37°C, washed three times with PBS, and then maintained in medium without fetal calf serum for a further 96 h. The duplicate cells received medium supplemented with 0.5 µg of acetylated trypsin/ml. At 5 days postinfection, the cell culture supernatants were harvested and subjected to low-speed centrifugation (2,000 x g, 15 min, 4°C) to remove detached cells. An aliquot of each supernatant was taken and titrated by plaque assay as described above. Viruses in the remaining supernatant (ca. 4.5 ml) were pelleted through a 25% sucrose cushion by ultracentrifugation (105,000 x g, 60 min, 4°C) and dissolved in sodium dodecyl sulfate (SDS) sample buffer. The volume was adjusted corresponding to the calculated virus titers. Aliquots (10 µl) of the viruses were run on an SDS-10% polyacrylamide gel under nonreducing conditions and transferred to nitrocellulose by the semidry blotting technique (24). The membrane was incubated overnight at 4°C with PBS containing 1% bovine serum albumin, washed three times with PBS containing 0.1% Tween 20, and incubated for 1 h at room temperature with a mixture of three different monoclonal antibodies directed to the RSV F protein (each diluted 1:1,000 in PBS). The antibodies used were RSV3216 (Serotec) and clones 7.901 and 47F kindly provided by Jose Antonio Melero (Madrid, Spain) and Claes Örvell (Stockholm, Sweden), respectively. The blots were washed as described above, and primary antibody was detected by incubation with a biotinylated goat anti-mouse immunoglobulin serum (1:1,000 in PBS; Amersham-Pharmacia), followed by three wash steps and incubation with a streptavidin-peroxidase complex (1:2,000 in PBS; Amersham-Pharmacia). Both incubations were performed for 60 min at 4°C. Finally, the nitrocellulose was washed as described above and incubated for 1 min with a chemiluminescent peroxidase substrate (BM chemoluminescence blotting substrate, Roche Diagnostics). The resulting light emission was visualized by short exposure of the membrane to an Biomax autoradiography film.
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106-130), with a deletion of 25 amino acids in the F protein. The deletion comprised FCS-2 and most of pep27, retaining only FCS-1 and the two basic amino acids at positions 131 and 132 (Fig. 1). Virus stocks were prepared by two passages on PT-11 (bovine calf kidney) cells. To verify the identity of the recombinant virus mutants, total RNA was extracted from infected cells and the region between nucleotides 5570 and 6313 of the RNA genome was amplified by RT-PCR. Although the PCR product derived from the parental virus genome was ca. 750 bp long, the deletion mutant was characterized by a PCR product of 670 bp, thus confirming the deletion within the F gene (data not shown). All changes introduced into the F gene were also verified by sequencing of the RT-PCR products.
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FIG. 1. Amino acid changes introduced into the F protein of recombinant BRSVs. A section of the BRSV fusion protein comprising amino acids 102 to 139 is shown. The furin consensus sequences are underlined, and the positions of the amino acids located N terminally of the furin cleavage site are indicated. Identical amino acids are represented by dots, and dashes indicate deleted amino acids. The three proteolytic cleavage products F1, F2, and pep27 are indicated by bars.
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106-130) differed from the parental F protein in the smaller size of its precursor F0 (lane e).
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FIG. 2. Proteolytic processing of parental and mutant F proteins of recombinant BRSVs. (A) PT-11 cells were infected with recombinant BRSVs at an MOI of 0.1. At 40 h after infection, the cells were metabolically labeled with [35S]methionine-[35S]cysteine for 1 h, and F protein was immunoprecipitated from the cell lysates. The immunoprecipitates were separated by Tricine-SDS-10% polyacrylamide gel electrophoresis under reducing conditions and detected by autoradiography [lane a, rBRSV-F(parental); lane b, rBRSV-F(R106N/K108N); lane c, rBRSV-F(K108N/R109N); lane d, rBRSV-F(R106S/K108N/R109N); lane e, rBRSV-F( 106-130); lane f, noninfected cells]. (B) PT-11 cells were infected with recombinant BRSVs at an MOI of 0.1 and maintained in medium either in the absence or presence of trypsin (as indicated at the top of the gel). After 4 days, the viruses were harvested from the cell culture supernatant and then pelleted by ultracentrifugation. The viruses were solubilized by SDS sample buffer and run on an SDS-8% polyacrylamide gel under nonreducing conditions [lanes a and b, rBRSV-F(parental); lanes c and d, rBRSV-F(R106N/K108N); lanes e and f, rBRSV-F(K108N/R109N); lanes g and h, rBRSV-F(R106S/K108N/R109N); lanes i and j, rBRSV-F( 106-130)]. F protein was detected by conventional Western blot technique with a mixture of three monoclonal antibodies directed to this protein. The relative positions of standard proteins (with the molecular masses indicated in kilodaltons) are shown on the left.
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The growth characteristics of the parental and mutant rBRSVs were analyzed by using the bovine kidney PT-11 cell line, as well as African green monkey kidney (Vero) cells. The cells were infected in duplicate with the viruses at an MOI of 0.1, and supernatants were collected over a 6-day period at 24-h intervals. The virus titers were quantitated in duplicate by a plaque assay facilitated by immunological staining of the matrix protein. In the absence of trypsin (Fig. 3A), the FCS-2 cleavage mutants showed a somewhat reduced virus release in the beginning, but at day 6 postinfection they reached the titers of the parental virus. In the case of the mutants rBRSV-F(R106N/K108N) and rBRSV-F(K108N/R109N), this growth retardation was compensated for by the addition of acetylated trypsin (0.5 µg/ml) to the cell culture supernatant (Fig. 3B). In contrast, trypsin did not affect replication of either the parental virus or the mutant rBRSV-F(R106S/K108N/R109N) (Fig. 3C). The deletion mutant rBRSV-F(
106-130) replicated in PT-11 cells with a kinetics comparable to that of the parental virus. Likewise, the presence of trypsin had no effect on replication of this virus. Very similar growth kinetics were observed with Vero cells, although BRSV generally grew to lower titers in this cell line (not shown). On the other hand, BRSV caused a much more pronounced cytophatic effect in Vero cells than in PT-11 cells. At day 3 postinfection, we observed giant multinucleated cells in the Vero cell monolayer infected with the parental rBRSV (Fig. 4). Syncytium formation was also induced by the FCS-2 cleavage mutants; however, the syncytia were of smaller size and contained much fewer nuclei, indicating that the mutations introduced into the FCS-2 cleavage site affect cell-to-cell fusion. The syncytia formed by the mutants rBRSV-F(R106N/K108N) and rBRSV-F(K108N/R109N) grew to almost the parental virus level during the following 24 h. In striking contrast, the size of syncytia formed by the mutant rBRSV-F(R106S/K108N/R109N) did not change with time (data not shown). The deletion mutant showed a phenotype similar to that of the triple mutant, e.g., formation of very small syncytia that did not increase in size after longer incubation. Taken together, these results indicate that both FCS-2 and the intervening peptide pep27 are dispensable for virus replication in cell culture.
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FIG. 3. Multistep replication of recombinant BRSV mutants in PT-11 cells. Duplicate cell monolayers in six-well dishes were infected with the indicated viruses at an MOI of 0.1 and incubated at 37°C with medium either in the absence (open symbols) or presence (solid symbols) of 0.5 µg of acetylated trypsin/ml. Aliquots were taken at the indicated times, stored at -80°C, and titrated in parallel by plaque assay on Vero cells. Each point shown is the mean titer from two wells of infected cells. For reasons of presentation, the figure has been divided into three parts. (A) Comparison of parental rBRSV (parental) with rBRSV-F(R106N/K108N) (NANR), rBRSV-F(K108N/R109N) (RANN), and rBRSV-F(R106S/K108N/R109N) (SANN); (B) effect of trypsin on replication of the mutants rBRSV-F(R106N/K108N) (NANR) and rBRSV-F(K108N/R109N) (RANN); (C) effect of trypsin on replication of parental virus (parental), rBRSV-F( 106-130) ( 106-130), and rBRSV-F(R106S/K108N/R109N) (SANN).
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FIG. 4. Cytophatic effect induced in Vero cells by parental and mutant BRSVs. The cells were photographed at 72 h postinfection with rBRSVs containing the indicated mutant F proteins (MOI = 0.1).
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A unique feature of RSV is the additional cleavage of the F protein at a second furin consensus sequence, FCS-2, separated from the fusion peptide by 27 amino acids. Previous studies by using a plasmid-driven or vaccinia virus-based expression system revealed that F-mediated syncytium formation was significantly affected when either FCS-1 or FCS-2 were changed into a furin-resistant motif by site-directed mutagenesis, indicating that cleavage at both sites might be important for activation of the RSV fusion protein (12, 41). In the present study, we learned from reverse genetics that cleavage at FCS-2 is not essential for virus infectivity though the FCS-2 cleavage mutants did not grow as efficiently as the parental virus during the first replication cycles. If a single arginine was left with the modified motif (NANR109 or RANN109), the addition of trypsin to the cell culture supernatant compensated for this growth retardation, whereas it had no supporting effect on rBRSV-F(R106S/K108N/R109N) that did not contain any arginine or lysine residues in the modified FCS-2. Accordingly, trypsin treatment caused a partial cleavage of the mutants rBRSV-F(R106N/K108N) and rBRSV-F(K108N/R109N), whereas there was no evidence for cleavage by endogenous trypsin-like proteases. However, the mutant F protein of rBRSV-F(R106S/K108N/R109N) was also cleaved by trypsin but probably at a different site. Potential cleavage sites within pep27 are Arg119 and Lys-Lys124. The amino acid changes made with the FCS-2 also led to a reduced syncytium formation by the recombinant BRSV mutants. These findings suggest that the fusion activity of the FCS-2 mutants is not abolished but impaired. Probably, the glycosylated pep27 that remains attached to the F2 subunit of the FCS-2 cleavage mutants interferes with conformational rearrangements necessary for optimal fusion activity (12). In accordance with this view, the deletion mutant lacking pep27 did not show any growth retardation and addition of trypsin had no supporting effect on this virus. Nevertheless, the deletion mutant also showed a drastically reduced syncytium formation activity in Vero cells. It should be noted that the mature parental F protein differs from the deletion mutant with respect to the C terminus of its F2 subunit. Although the former ends with the sequence RAKR109, the latter has two additional amino acids and terminates with the sequence KKRKRR111. This C terminus did not impair the infectivity (virus-to-cell fusion) of rBRSV-F(
106-130) as indicated by the growth kinetics. However, it might interfere with cell-to-cell fusion, suggesting that the structural requirements for these two processes differ from each other. Differences between virus-to-cell fusion and syncytium formation have also been reported for the fusion protein of other enveloped viruses (8, 32, 37).
The second furin consensus sequence RAK/RR109 in the RSV fusion protein is highly conserved in all HRSV and BRSV strains isolated so far, suggesting that this cleavage site has a role in the viral life cycle. Our results indicate that cleavage at FCS-2 is not critical for virus replication in cell culture. However, it might be advantageous for RSV replication in vivo. One possible function of pep27 and the dual cleavage might be related to the host immune response. The RSV fusion protein has recently been shown to inhibit proliferation of T cells by cell-to-cell contact (31). In analogy to measles virus (38), proteolytic activation of RSV F might be necessary for this function. It will be interesting to determine, by using the mutants described here, how the proteolytic processing of the fusion protein may influence its inhibitory activity. Another possible function might be related to pep27 itself, the intervening peptide released upon furin cleavage at FCS-2 and FCS-1. Like FCS-2, this peptide is dispensable for virus replication in cell culture. However, the motif FYGLM129 in pep27 of BRSV suggests a possible role in the host. FYGLM129 matches the signature sequence FXGLM characteristic for the tachykinin family of bioactive peptides (36). Substance P and other members of this family exhibit multiple activities, including the induction of bronchoconstriction, mucus secretion, histamine release, vasodilation, and others (5, 17, 25, 30). It remains to be experimentally shown whether pep27 of BRSV or a further processed form of it exhibits a similar tachykinin-like activity. Although the pep27 peptides of all known BRSV isolates are highly homologous to one another, they show only little similarity with the pep27 of HRSV. In particular, the latter lacks the tachykinin motif, indicating that the pep27 peptides of BRSV and HRSV might exhibit different activities. Whatever the function of the two different peptides exactly is, we should take into account that both peptides might contribute to the pathogenicity of RSV. This idea is especially important for the development of live attenuated RSV vaccines or other virus vectors expressing the RSV F protein, as well as for DNA vaccines which are based on the F gene. In this regard, the deletion mutant rBRSV-F(
106-130) is of particular interest since it is expected to lack the proposed activity of pep27. Another feature of this mutant that makes it an interesting vaccine candidate is the reduced cytopathic effect in infected cells. Finally, this virus will help us to study the role of pep27 in infection of the host.
This work was supported by grants from the European Community (QLK2-CT-1999-00443) and the Deutsche Forschungsgemeinschaft (HE 1168/11-1/2) to G.H.
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