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Journal of Virology, August 2002, p. 7863-7867, Vol. 76, No. 15
0022-538X/02/$04.00+0 DOI: 10.1128/JVI.76.15.7863-7867.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Oligomeric Structure of the Human Immunodeficiency Virus Type 1 Envelope Protein on the Virion Surface
Rob J. Center,1 Richard D. Leapman,2 Jacob Lebowitz,2 Larry O. Arthur,3 Patricia L. Earl,1 and Bernard Moss1*
Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases,,1
Division of Bioengineering and Physical Science, Office of Research Services, National Institutes of Health, Bethesda, Maryland 20892,2
AIDS Vaccine Program, Science Applications International CorporationFrederick, National Cancer Institute at Frederick, Frederick, Maryland 217023
Received 26 February 2002/
Accepted 29 April 2002

ABSTRACT
The envelope protein (Env) of human immunodeficiency virus type
1 forms homo-oligomers in the endoplasmic reticulum. The oligomeric
structure of Env is maintained after cleavage in a Golgi compartment
and transport to the surfaces of infected cells, where incorporation
into budding virions takes place. Here, we use biophysical techniques
to assess the oligomeric valency of virion-associated Env prior
to fusion activation. Virion-associated Env oligomers were stabilized
by chemical cross-linking prior to detergent extraction and
were purified by immunoaffinity chromatography. Gel filtration
revealed a single predominant oligomeric species, and sedimentation
equilibrium analysis-derived mass values indicated a trimeric
structure. Determination of the masses of individual Env molecules
by scanning transmission electron microscopy demonstrated that
virion-associated Env was trimeric, and a triangular morphology
was observed in 20 to 30% of the molecules. These results, which
firmly establish the oligomeric structure of human immunodeficiency
virus virion-associated Env, parallel those of our previous
analysis of the simian immunodeficiency virus Env.

TEXT
The envelope protein (Env) of human immunodeficiency virus type
1 (HIV-1) mediates functions that are critical to the viral
life cycle, including viral attachment to target cells and the
fusion of viral and cellular membranes. The Env precursor gp160
is cotranslationally translocated into the luminal endoplasmic
reticulum, where essential maturation steps, such as N-linked
glycosylation, disulfide-bond formation, and oligomerization,
occur (
11). Cleavage in the Golgi complex by a cellular protease
prior to egress to the cell surface is also requisite for viral
infectivity (
23). The products of cleavage, the surface subunit
gp120 and the transmembrane (TM) subunit gp41, remain associated
through noncovalent interactions. A TM domain within gp41 anchors
an oligomeric complex of gp41 and gp120 to the surfaces of infected
cells and, after budding takes place, to the surfaces of virions.
Thus, the functional form of Env is oligomeric. Furthermore,
oligomeric structure influences the antigenicity of Env, which
is the main target of the neutralizing humoral immune response
of the host. The virus-neutralizing capacity of monoclonal antibodies
(MAb) derived from infected humans is predicted by binding to
cell-associated oligomeric Env but not by binding to monomeric
Env (
15,
25).
Env displays considerable conformational flexibility. Sequential interactions between gp120 and the cell surface receptors CD4 and one of the members of the chemokine receptor family trigger conformational changes in both gp120 and gp41. These changes are believed to lead to the insertion of the gp41 N-terminal fusion peptides into the target cell membrane and ultimately to membrane fusion between the infected cell or virion and the target cell (reviewed in references 12 and 35). Crystallographic analysis revealed that upon mixing of peptides corresponding to predicted gp41 N- and C-terminal
-helical regions, a triple-stranded coiled-coil core of N-terminal peptides with three C-terminal peptides packed into grooves on the outer surface of the coiled-coil in an antiparallel orientation was formed (7, 32). The antiparallel packing places the N termini of the N-terminal helices and the C terminal of the C-terminal helices at the same end of a rod-like structure. This arrangement implies that the N-terminally located fusion peptides and C-terminally located TM domains (neither of which was present in the crystallized fragments) are in close proximity. This structure is believed to represent the conformation of gp41 after the fusion process (postfusion conformation), with the fusion peptides and TM domains being located in the same membrane.
The nature of the oligomeric structure of HIV-1 Env in the native conformation prior to fusion activation is uncertain. Biochemical approaches employing chemical cross-linking and sucrose gradient sedimentation revealed that recombinant gp160 forms dimers and higher-order oligomers (8, 10). Soluble uncleaved recombinant Env lacking the TM domain and cytoplasmic tail (gp140) has also been suggested to form dimers and tetramers (9) or dimers and trimers (13, 27). In contrast, gp140 devoid of complex carbohydrate groups was reported to form a relatively homogeneous population of trimers (37). Recombinant gp120 dimers have been described previously (5), while gp120 derived from recombinant gp160 has been shown to be dimeric under some conditions (24) but monomeric under others (10, 29). Virion-derived gp120 trimers have also been reported (30). The differences in the oligomeric states reported may be due to the difficulties in resolving large cross-linked glycoproteins by electrophoresis or, in the case of recombinant proteins, may reflect actual differences in oligomeric states resulting from the analysis of truncated or mutated species and the use of different expression systems. We have recently shown that virion-associated Env of another primate immunodeficiency virus, simian immunodeficiency virus (SIV), is trimeric (6). In the present study, we have used parallel biochemical and biophysical strategies to determine the oligomeric state of Env on the surfaces of HIV-1 virions.
Virion-associated HIV-1 Env purifies as one predominant oligomeric species.
HIV-1MN virions were purified by sucrose density gradient sedimentation and treated with 2,2'-dithiodipyridine, which blocks infectivity but does not compromise the structural or functional integrity of Env (26). In order to assess the quaternary structure of gp120/gp41 complexes on the virion surface, chemical cross-linking was performed prior to virion lysis to preserve the oligomeric contacts, which are otherwise readily disrupted by detergent (10). Virions (33.3 mg of total virion protein in a 46-ml volume of phosphate-buffered saline [PBS]) were cross-linked with a final concentration of 1 mM 3,3'-dithiobis(sulfosuccinimidyl propionate) (DTSSP; Pierce), a thiol-cleavable, amine-reactive cross-linker, as previously described (6). Virions were then lysed by the addition of hydrogenated Triton X-100 (TX-100h) (Calbiochem) at a final concentration of 1%. Env was purified from the lysate by immunoaffinity chromatography with anti-gp41 cytoplasmic domain MAb C8 (1) which had been coupled to CNBr-activated Sepharose (Amersham Pharmacia Biotech AB) according to the manufacturer's recommendations. After the lysate and Sepharose-coupled C8 were mixed overnight at 4°C and for 2 h at room temperature and then washed extensively with PBS-0.1% TX-100h, bound protein was eluted with 100 mM glycine-0.1% TX-100h-0.02% sodium azide (pH 2.8), followed by immediate neutralization. Concentrated eluate was subjected to gel filtration chromatography using a Superdex 200 column (Amersham Pharmacia Biotech AB) with PBS-0.1% TX-100h-0.02% sodium azide as the buffer (6).
Aliquots of individual gel filtration fractions were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) in the presence of reducing agent (DTSSP cross-links broken) and immunoblotted with the gp120-specific MAb D19 (9), and the results were expressed for each fraction as a percentage of the total Env-specific signal. Env resolved as a symmetrical peak, with most protein eluting at 48 to 51 ml (Fig. 1A). SDS-PAGE analysis of a pool of fractions 48 to 51 under reducing conditions followed by Coomassie blue staining revealed the presence of bands corresponding to gp120 and gp41 (Fig. 1A, inset). A faint band of contaminating protein (between the gp120 and gp41 bands) constituting less than 5% of the total protein was also detected. Immunoblotting of nonreduced, DTSSP-cross-linked proteins (Fig. 1B) showed that Env had a lower electrophoretic mobility than a 250-kDa mass standard, in contrast to monomeric gp120, which migrated more rapidly than the 250-kDa mass standard (based on SDS-PAGE analysis of reduced Env) (Fig. 1A, inset), suggesting that Env was oligomeric. Furthermore, all cross-linked Env migrated to the same position, indicating that Env occurs as one predominant oligomeric species. Analysis of concentrated gel filtration fractions (data not shown) indicated the presence of a small amount of Env in fractions 60 to 62, consistent with dissociation or partial dissociation of some oligomers.
HIV-1 Env in the prefusion activated conformation is trimeric.
Gel filtration analysis has been used to estimate the mass of
globular proteins by comparison with calibration standards;
however, our previous studies with HIV-1 gp120 and SIV Env suggest
that Env is nonglobular, precluding mass determination by this
method (
5,
6). Scanning transmission electron microscopy (STEM)
(
19) and sedimentation equilibrium analysis are biophysical
methods that allow shape-independent mass determination. Env
and tobacco mosaic virus were sequentially absorbed onto copper-mesh-supported
carbon grids in 5-µl aliquots at a concentration of approximately
0.02 to 0.05 and 0.4 mg/ml, respectively, and STEM determination
of Env mass was performed as previously described (
6). Mass
values were calibrated using tobacco mosaic virus particles
contained in the same field as the Env molecules. Examination
of a histogram of the measured masses of 795 Env molecules within
a pool of fractions 48 and 49 revealed a peak with a Gaussian
distribution (Fig.
2A). The mean of this distribution was 457
kDa with a standard deviation of 86 kDa (Table
1). Similarly,
a histogram of the measured masses of 753 Env molecules within
a pool of fractions 50 and 51 demonstrated a Gaussian distribution
with a mean of 448 kDa and a standard deviation of 92 kDa (Fig.
2B; Table
1). These data are highly consistent with the expected
mass of an Env trimer (441.9 kDa). The heterogeneity of glycosylation
and random experimental error due to the low dosage used to
generate STEM images may have contributed to the standard deviation.
The bound cross-linker DTSSP (molecular weight, 608.51) is not
expected to greatly add to the total mass values obtained. STEM
analysis of a second independently purified preparation of virion-associated
HIV-1 Env gave a mass value of 469 kDa for a pool of fractions
48 to 50 (data not shown). In approximately 20 to 30% of the
STEM images of individual Env molecules, an apparent triangular
morphology was observed (Fig.
3). This morphology is similar
to that observed previously for the SIV Env of intact virions,
purified-virion-derived SIV Env trimers, and SIV gp140 trimers
(
6,
16).
Weight-average molecular weights of Env within individual gel
filtration fractions were determined by sedimentation equilibrium
with an Optima XL-A/I analytical ultracentrifuge (Beckman).
Cells were loaded with 120- to 135-µl sample volumes at
a final concentration of 0.1 to 0.5 mg/ml. Sedimentation equilibrium
absorbance data sets (wavelength, 280 nm) were measured at four
different rotor speeds (7,000, 8,500, 10,000, and 12,000 rpm)
at a rotor temperature of 10°C. The potential contribution
of Env-associated TX-100h to the mass of Env was eliminated
by matching the solvent density to the density of TX-100h by
using a final concentration of 8.43% (wt/vol) sucrose, as previously
described (
6). Mass spectral analysis of HIV-1
JRFL gp120 (cleaved
from recombinant gp140; D. Sheeley and R. Center, unpublished
data) allowed for the determination of the average carbohydrate
molar mass contribution of each potential N-linked glycosylation
site (1.739 kDa). This value is in close agreement with the
average carbohydrate molar mass values for each potential site
that were calculated using the mass spectral analyses of recombinantly
derived, mammalian-cell-expressed gp120s of the BH8 (P. Earl
and K. Parker, unpublished data), SF2 (
3), and GB8 (
17) strains
(range, 1.68 to 1.78 kDa per site). The 1.739-kDa value was
used to estimate the carbohydrate molar mass of virion-derived
HIV-1 Env and therefore the weight fractions of protein (0.634)
and carbohydrate (0.366). A partial specific volume (
vbar) value
of 0.622 ml/g was used for the carbohydrate weight fraction
(
20), and the protein
vbar was calculated from the amino acid
sequence to be 0.732 ml/g. The
vbar of Env was determined by
the formula 0.634 (0.732 ml/g) + 0.366 (0.622 ml/g) = 0.692
ml/g. Sedimentation equilibrium absorbance versus radial-position
data sets (Fig.
4) were analyzed by global nonlinear regression
analysis with the data analysis software package provided by
Beckman-Coulter Instruments (version 4.0 and Microcal version
4.1) to give the mass values and calculated numbers of subunits
shown in Table
1. The sedimentation equilibrium analysis-derived
mean number of subunits for the four fractions is 3.30, slightly
higher than both the STEM-derived mean number of subunits for
the same fractions (3.07) and the expected value for trimers.
This result could be explained by the presence of traces of
oligomers with more than three subunits, as such molecules would
contribute more significantly to the weight-average, molar mass
measured at sedimentation equilibrium than to the number-average
mass values obtained by STEM. In fact, a sedimentation coefficient
distribution analysis of the sedimentation velocity boundary
for each fraction showed a predominant peak at approximately
9S and a small peak (less than 10% of the total) in the 14S
region (data not shown). The latter minor component is consistent
with a low level of intertrimer cross-linking. Sedimentation
equilibrium analysis performed on a second independently purified
preparation of virion-associated HIV-1 Env gave a mass value
for a pool of fractions 48 to 50 of 441.1 kDa (2.99 subunits
[data not shown]).
In summary, the data from two independent biophysical techniques
clearly indicated that HIV-1 gp120/gp41 complexes on the virion
surface exist as trimers. Trimeric structure was also seen with
SIV virion-associated Env prior to fusion activation (
6) and
in the crystal-derived structures of N- and C-terminal helical
domains of HIV-1 gp41 and the SIV TM subunit, which are believed
to represent the postfusion conformation (
7,
21,
32,
36). Indeed,
trimeric structure is a recurring theme in viral envelope protein
biology. Crystal-derived structures of the Env TM subunits of
human T-cell leukemia virus type 1 (
18), Moloney murine leukemia
virus (
14), visna virus (
22), Ebola virus (
31), simian parainfluenza
virus 5 (
2), human respiratory syncytial virus (
38), and influenza
virus (
4) are remarkably similar, all having a trimeric coiled-coil
core. In the case of influenza virus hemagglutinin, a crystal-derived
structure of the prefusion activated conformation also demonstrated
a trimeric structure (
34). It seems likely that functionally
conserved aspects of Env-mediated membrane fusion underlie a
common trimeric structural plan. However, the maintenance of
a single Env oligomeric valency throughout the fusion process
is not universal among enveloped viruses. For example, tick-borne
encephalitis virus Env is a homodimer in the prefusion conformation
and undergoes a transition to a homotrimer during fusion activation
(
28).
The homogeneous nature of the quaternary state of virion-associated HIV-1 Env that we observed contrasts with the oligomeric heterogeneity reported for recombinant, uncleaved forms of Env, such as membrane-anchored gp160 (8, 10) or soluble, secreted gp140 (9, 13, 27). High expression levels associated with recombinant systems and lack of membrane anchoring in the case of gp140 may induce aberrant quaternary forms not seen in natural infection. Alternatively, it is possible that heterogeneous quaternary structure may be a normal consequence of Env expression and that cellular mechanisms, which normally prevent nontrimeric forms from being exported to the cell surface, fail in the context of recombinant expression. Consistent with this suggestion, it has been reported that most of the gp160 expressed in infected cells is routed to lysosomes rather than the cell surface (33). Regardless of whether the uniformity of virion-associated envelope quaternary structure is controlled at the level of initial oligomerization in the endoplasmic reticulum or by subsequent cellular quality control mechanisms, it appears certain that trimerization is critical for Env function.

ACKNOWLEDGMENTS
We thank G. Stubbs of Vanderbilt University for providing tobacco
mosaic virus, D. Sheeley for mass spectral analysis, and P.
Schuck for helpful discussions and manuscript review.
This work was supported in part by a National Institutes of Health Intramural AIDS Targeted Antiviral Program grant.

FOOTNOTES
* Corresponding author. Mailing address: Laboratory of Viral Diseases, National Institutes of Health, Building 4, Room 229, 9000 Rockville Pike, Bethesda, MD 20892. Phone: (301) 496-9869. Fax: (301) 480-1147. E-mail:
bmoss{at}nih.gov.


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Journal of Virology, August 2002, p. 7863-7867, Vol. 76, No. 15
0022-538X/02/$04.00+0 DOI: 10.1128/JVI.76.15.7863-7867.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
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