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Journal of Virology, July 2002, p. 7349-7355, Vol. 76, No. 14
0022-538X/02/$04.00+0 DOI: 10.1128/JVI.76.14.7349-7355.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas 77030
Received 15 January 2002/ Accepted 18 April 2002
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PPR-EBNA2 was able to support B-cell proliferation similar to that of wild-type EBNA2 in this assay, indicating that deletion of the PPR from EBNA2 does not result in a loss of function required for immortalization maintenance. Further analysis of this mutant EBNA2 revealed that it consistently activated the viral LMP1 and LMP2A promoters severalfold better than wild-type EBNA2 in transient cotransfection assays. In addition, one striking difference between lymphoblastoid cell lines expressing wild-type EBNA2 from those expressing
PPR-EBNA2 is that the latter cells have significantly reduced EBV genomic levels. The data are consistent with a model in which lower EBNA2 target gene dosage may be selected for in
PPR-EBNA2-dependent cell lines to compensate for hyperactive stimulation of viral genes, such as LMP-1, which is cytostatic for B cells when overexpressed. It is conceivable that the hyperactivity rather than the loss of function, as hypothesized previously, could be responsible for the inability of recombinant
PPR-EBNA2 EBVs to immortalize B cells. |
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EBNA2 cannot bind DNA by itself and is recruited to its target viral promoters by means of physical interaction with a sequence-specific cellular DNA-binding protein, CBF1 (17, 23, 38, 60). EBNA2-CBF1 complex formation is absolutely required for EBNA2 to maintain EBV-induced immortalization (16). Another cellular protein, SKIP, interacts with both EBNA2 and CBF1 and appears to be critical for transcriptional activation by EBNA2 (56). A number of other cellular proteins have been implicated in mediation of EBNA2 function, including PU.1, AUF1, PP1/PP2A-like protein, DP103, and hSNF5/Ini1 (12, 14, 18, 25, 35, 52, 55). However, the functional significance of interactions between these proteins and EBNA2 for immortalization remains to be demonstrated. The prototype EBNA2 from a type 1 EBV isolate is a 490-amino-acid protein that contains an acidic transcriptional activation domain and a canonical nuclear localization signal in the carboxy-terminal third of the protein (6, 9, 39). A highly unusual region in which 43 out of 45 amino acids are prolines is found in the amino-terminal part of EBNA2 (amino acids 59 to 103) and is commonly referred to as the polyproline region (PPR) (9). Several functional domains have been identified in EBNA2 that are required for transcriptional activity and/or the ability to support immortalization (6, 7, 53). The domains map to several evolutionarily conserved regions found in EBNA2 proteins from human and primate lymphocryptoviruses (37). Conserved region 6 (CR6) mediates binding to CBF1, while CR5 mediates interaction with SKIP and CR8 is important for activation domain function (6, 23, 38, 39, 54, 57). While these regions are located in the carboxy-terminal half of EBNA2, much of the amino-terminal half of the protein has been shown to be dispensable for both transcriptional activity and immortalization (21, 53). Within this region, however, the highly unusual polyproline motif was required for immortalization in marker rescue experiments (53). Curiously, deletion of the PPR did not abolish EBNA2's ability to transactivate the viral LMP1 promoter in transient transfection assays, nor did deletion of this region abolish EBNA2's ability to interact with CBF1 or disrupt a proposed multimerization function mediated by the amino terminus (20, 53). All EBNA2 homologues cloned so far contain PPRs of considerable lengths. EBNA2 from type 2 EBV has a 16 (14P)-amino-acid-long PPR, while in baboon and rhesus lymphocryptoviruses the PPRs are of intermediate length, with 24 and 28 proline residues, respectively (5, 39, 43). To our knowledge, no other primate protein has been identified possessing such a high number of consecutive or near-consecutive prolines. The PPR's uniqueness and the fact that it appears to be essential for immortalization by EBV make the putative PPR-mediated function an attractive candidate for therapeutic intervention, yet the role of the PPR in mediating EBNA2 function remains a mystery. The experiments used to establish the requirement for PPR in immortalization relied on generating recombinant EBVs by a marker rescue strategy carrying the immortalization-incompetent
PPR-EBNA2 genes and failed to yield any information as to the consequences of the PPR deletion for the immortalization (53). On the basis of previous studies we hypothesized that
PPR-EBNA2 would be defective in one or more EBNA2 functions essential for immortalization and involving cellular rather than viral targets.
As a first step towards development of a model to dissect the mechanism of the effect of PPR deletion on EBNA2 function, we have analyzed the phenotypic properties of
PPR-EBNA2 in the context of an EBV-immortalized cell line. A transcomplementation assay for EBNA2 function in immortalization was recently developed (16). In this assay the EREB cell line is used, which is immortalized by an EBV with a conditional EBNA2 allele (30). EBNA2 function in this cell line is rendered strictly dependent on estrogen in the medium as a result of a fusion of the estrogen-receptor-binding domain (ERLBD) to EBNA2 (EREBNA2). In the absence of estrogen, EREBNA2 function is inactivated and EREB cells undergo growth arrest and apoptosis and eventually die out (29, 30). We have demonstrated that lentiviral transduction of a wild-type EBNA2 protein rescued cellular growth in the absence of estrogen quite readily (16). In contrast, an immortalization-incompetent mutated EBNA2 gene encoding a protein unable to interact with CBF1 (WW326SR) failed to rescue the EREB cells after estrogen withdrawal (16). Thus, the transcomplementation approach can be used to study the effect of mutations in EBNA2 on cellular growth and/or phenotype.
There are important differences between the transcomplementation approach and the previously utilized marker rescue assay employed by other investigators to analyze the immortalizing ability of
PPR-EBNA2 (7, 8, 16, 21, 53). In marker rescue experiments, the ability of recombinant viruses carrying
PPR-EBNA2 genes to initiate and maintain immortalization of primary B cells was assessed. The process of immortalization is a complex phenomenon involving many stages, including initial infection, EBV genome circularization, activation of B cells accompanied by entry into cell cycle, amplification of EBV genomes in the infected cells, latency promoter usage switch, oligoclonalization of outgrowing LCLs, and finally, maintenance of the immortalized state (3, 31, 45). In the transcomplementation assay, however, only the ability of ectopically expressed EBNA2 proteins to rescue the maintenance of the immortalized state can be assessed.
Ectopic expression of
PPR-EBNA2 replaces EREBNA2 function in proliferation maintenance of EREB cells.
An EBNA2 open reading frame without the PPR was generated by PCR and subcloned into the SG5 expression vector (Stratagene) and lentiviral vector pLIG as described previously for wild-type EBNA2 (16, 43). EREB cell pools were prepared expressing wild-type EBNA2, the mutant
PPR-EBNA2, or the lentiviral vector alone and were grown as described previously (16). Briefly, the EREB cells were transduced with the corresponding recombinant lentiviruses followed by enrichment for cells expressing green fluorescent protein by using fluorescence-activated cell sorting (FACS). Two independently generated cell pools were prepared for each provirus. The transduced and sorted cells were expanded in the presence of estrogen for 2 weeks. Subsequent FACS analysis showed that the resulting cell pools had similar mean fluorescence intensities and were approximately 90% green fluorescent protein positive (data not shown). After 2 weeks of expansion in the presence of estrogen, the cell pools were further analyzed for their ability to survive and proliferate under estrogen-free medium conditions that result in inactivation of endogenous EREBNA2 function (16). The cell pools were maintained in a logarithmic phase immediately before estrogen withdrawal. After estrogen withdrawal, the survival and proliferation of the cells was monitored by using the MTT assay with Cell Proliferation Kit I (Molecular Roche) as recommended by the manufacturer (41). Unexpectedly, the
PPR-EBNA2-expressing cells survived and proliferated as well as the wild-type EBNA2-expressing cells, while the empty-vector-expressing cells quickly died out (Fig. 1). Once the sorted cell pools were expanded for 2 weeks in the presence of estrogen, long-term estrogen-independent LCLs were readily established from EBNA2 and
PPR-EBNA2-expressing EREB cells, but not from the empty-vector-transduced cells, after being switched to estrogen-free medium during routine passaging. After 6 weeks in culture in estrogen-free media, such EBNA2- and
PPR-EBNA2-rescued estrogen-independent LCLs expressed EBNA2 proteins at similar levels and proliferated at a similar rate (Fig. 2). Invariably, in the EBNA2-transduced cells lower-molecular-weight EBNA2-specific bands were detected by Western blotting (Fig. 1B). These EBNA2-specific bands were present even in the long-term wild-type or mutant EBNA2-rescued estrogen-independent LCLs (Fig. 2B). Some possible explanations for these lower-molecular-weight forms are that they are degradation products or are polypeptides translated from alternatively spliced mRNAs derived from the lentiviral vector. Since wild-type EBNA2 expressed from the lentiviral vector readily substitutes for inactivated EREBNA2 protein and the resulting cell lines are similar in growth rate and phenotype to the parental cells, these lower-molecular-weight polypeptides appear not to affect EBNA2 function in the immortalized cells. The relative intensities of the lower-molecular-weight bands in both the wild-type and mutant EBNA2-transduced cells were similar, suggesting that the underlying phenomenon is not likely to contribute to the cellular phenotypes observed in our experiments (16). Interestingly, in the estrogen-independent cell lines the EREBNA2 protein was barely detectable (Fig. 2B). In the EREB cells the EREBNA2 protein is encoded by a mini-EBV plasmid replicating separately from the EBV P3HR1 genome (30). Southern blot analysis with a mini-EBV-specific probe (ERLBD) revealed that the EREBNA2 gene had largely been lost from the estrogen-independent cells, suggesting that the mini-EBV plasmids are rapidly disappearing from the immortalized cells once they are no longer required for survival and growth (data not shown).
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FIG. 1. PPR-EBNA2 supports survival and proliferation of EREB cells similar to that of wild-type EBNA2. (A) EREB cell pools transduced with the pLIG vector alone (-), pLIG.EBNA2 (WT), or pLIG. PPR-EBNA2 ( PPR) lentiviruses after enrichment by FACS were grown in the presence of 1 µM estrogen (ß-estradiol; Sigma) for 2 weeks prior to the experiment. At day 0 the cells were washed of estrogen and placed in the estrogen-free medium. On the same day an equal aliquot of cells was also processed for Western blot analysis (see below). Twenty-four hours later the cell pools were plated in 200-µl aliquots of estrogen-free medium in 96-well plates at 2 x 104 cells/well and were monitored for survival and proliferation by MTT assay daily over the course of 4 days, starting with day 1 (day of plating) after estrogen withdrawal. Absorbance at 570-nm (A570) and 690-nm (A690) wavelengths of completed MTT reactions were determined to calculate the A570-690 values by subtracting A690 from A570. (B) Western blot analysis of pLIG (lane 1), pLIG.EBNA2 (lane 2), and pLIG. PPR-EBNA2 (lane 3) transduced cell pools analyzed in panel A by using an anti-EBNA2 monoclonal antibody, PE2. Equal amounts of total cellular protein were analyzed in each lane. Molecular weight markers are shown in kilodaltons on the left.
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FIG. 2. Estrogen-independent EREB-derived LCLs expressing PPR-EBNA2 or wild-type EBNA2 exhibit similar growth rates. (A) Upon initial expansion after enrichment by FACS in the presence of estrogen for 2 weeks, the cell pools were grown in estrogen-free medium for an additional 6 weeks, resulting in the outgrowth of the estrogen-independent wild-type EBNA2-expressing (WT) and PPR-EBNA2-expressing ( PPR) LCLs. Proliferation of the rescued estrogen-independent cell lines was monitored by MTT assay (as described for Fig. 1) in estrogen-free medium over a course of 5 days, starting with day 0 (day of plating). On the same day an equal aliquot of cells from the same cell pool was also processed for Western blot analysis (see below). Absorbance at 570-nm (A570) and 690-nm (A690) wavelengths of completed MTT reactions were determined to calculate the A570-690 values by subtracting A690 from A570. (B) Western blot analysis of wild-type (lane 2) and PPR-EBNA2 (lane 3) protein expression in the LCLs analyzed for panel A was done as described in the legend to Fig. 1. The parental EREB cells transduced with vector alone and grown in the presence of estrogen (lane 1) and DG75 (lane 4), an EBV-negative Burkitt's lymphoma cell line, were used as controls. Equal amounts of protein were analyzed in each lane. Molecular weight markers are shown in kilodaltons on the left.
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PPR-EBNA2 recombinant viruses to immortalize B cells (53). The simplest interpretation of this discrepancy is that the PPR is required at early stages of immortalization, which are not analyzed with the transcomplementation assay. However, the possibility that the PPR is still required for immortalization maintenance when EBNA2 is expressed in the natural regulatory context of the episomal EBV genome cannot be excluded. Since both wild-type and mutant EBNA2 proteins are expressed at similar levels in our experiments, we conclude that, contrary to our original hypothesis,
PPR-EBNA2 is not severely impaired in any of its interactions with cellular targets and/or processes relevant to immortalization maintenance. Thus, we considered the possibility that rather than being defective, perhaps the
PPR-EBNA2 was an overly active protein. Expression of this protein away from the context of the EBV genome would allow for some novel compensatory mechanisms that would otherwise have been constrained. The recent discovery that LMP1 protein overexpression was cytostatic would also be consistent with this idea (13, 28). Therefore, we reevaluated the ability of
PPR-EBNA2 to transactivate the LMP1 and other EBNA2-responsive viral promoters in transient cotransfection assays.
Comparison of
PPR-EBNA2 and wild-type EBNA2 activation of viral EBNA2-responsive promoters.
An LMP1 promoter (-327 to +40) luciferase reporter construct, LMP1LUC0, was cotransfected into DG75 cells with the EBNA2 and
PPR-EBNA2 expression plasmids at different concentrations, as described previously (16). Luciferase activity in the cell extracts was measured 48 h posttransfection with the Dual-Luciferase Reporter Assay System (Promega) as recommended by the manufacturer. The results indicate that
PPR-EBNA2 stimulated the LMP1 promoter 3.5 times higher on average than the wild-type EBNA2 protein (Fig. 3A). Western blot analysis of the transfected cell extracts revealed that both proteins accumulated to similar levels, indicating that differences in transactivation were not due to differences in protein levels (Fig. 3C). This effect was more dramatic on the LMP1 promoter as
PPR-EBNA2 stimulated the LMP2A promoter (-804 to +59) only twice as well as wild-type EBNA2 (compare Fig. 3A and B), and both proteins showed similar activity on the viral C promoter (data not shown). We conclude that
PPR-EBNA2 possesses a higher specific transcriptional activity towards the LMP1 and LMP2A promoters than the wild-type protein.
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FIG. 3. PPR-EBNA2 transactivation of viral latency promoter constructs. (A) An LMP1 promoter-luciferase reporter plasmid (0.5 µg) was cotransfected into DG75 cells with the indicated amounts of wild-type EBNA2 (WT) or PPR-EBNA2 ( PPR) expression plasmids. The results are presented as fold-activation of the promoter in the presence of the effector. Average transactivation efficiencies representing three independent experiments are presented. (B) Transactivation of the LMP2A promoter reporter plasmid. An LMP2A promoter-luciferase reporter plasmid (0.5 µg) was cotransfected with the indicated amounts of the wild-type EBNA2 (WT) or PPR-EBNA2 ( PPR) expression plasmids. The results are presented as fold-activation of the promoter in the presence of the effector. Average transactivation efficiencies representing three independent experiments are presented. The reporter plasmids used in these experiments were described previously (36, 59). (C) A representative Western blot analysis of wild-type and PPR-EBNA2 expression in samples from the transient transfection experiments described for panel A. Forty-eight hours after transfection cells transfected with the indicated amounts of wild-type EBNA2 (WT, lanes 2 to 5) or PPR-EBNA2 ( PPR, lanes 6 to 9) expression plasmids were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis and Western blot analysis as described in the legend to Fig. 1. Cell lysate aliquots containing equal amounts of total cellular protein were loaded in each lane. Molecular weight markers are shown in kilodaltons on the left. Arrows on the right indicate migration of WT and PPR proteins.
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PPR-EBNA2 may stimulate higher LMP1 expression levels than wild-type EBNA2 in EBV-infected cells. Thus, the hypothesis that overexpression of LMP1 at cytostatic levels during the immortalization process by
PPR-EBNA2 recombinant viruses may at least in part be responsible for the immortalization-null phenotype of the virus deserves certain merit. The transcomplementation assay permits testing one prediction, namely, that EBV genomic DNA content might be down-regulated in the estrogen-independent
PPR-EBNA2-rescued EREB cells compared to that in wild-type EBNA2-rescued cells to compensate for LMP1 overexpression.
Analysis of relative viral genomic DNA content in the
PPR-EBNA2- and wild-type EBNA2-expressing estrogen-independent LCLs.
To compare relative genomic DNA content, total genomic DNA from the
PPR-EBNA2- and EBNA2-expressing estrogen-independent LCLs grown in the absence of estrogen as well as the parental EREB cells was prepared, digested with EcoRI and HindIII, and subjected to Southern blot analysis by using a full-length LMP1 cDNA probe followed by quantification with a phosphorimager. EBV genomic DNA content in the
PPR-EBNA2-rescued cells was 7.5 times lower on average than that in the wild-type EBNA2-rescued cells and was 18 times lower than that in the parental estrogen-dependent EREB cells, while LMP1 protein expression levels were similar (Fig. 4). Next we wanted to confirm that the differences in EBV genomic DNA levels were indeed determined by the differences in latent EBV genome content rather than by lytically replicated EBV DNA as a result of a potential difference in permissivity for lytic replication. To do this we took advantage of the fact that lytically replicated EBV DNA is linear, while latently replicated EBV DNA is circular. We employed a Gardella gel technique, which allows differentiation between the circular and linear EBV DNA (15). We determined that higher EBV genomic DNA content in the wild-type EBNA2-rescued cells is indeed due to differences in circular, that is, latent, EBV genomic DNA levels (Fig. 5).
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FIG. 4. (A) Analysis of LMP1 expression and relative EBV genomic DNA content. (A) Total genomic DNA from two subclones of the parental cell lines (EREB.1 and EREB.2), two independently derived wild-type EBNA2-rescued LCLs (WT.1 and WT.2), two independently derived PPR-EBNA2-rescued LCLs ( PPR.1 and PPR.2), and EBV-negative cell line DG75 was isolated and digested with EcoRI and HindIII restriction enzymes. Ten micrograms of each digested DNA was run on a 0.8% agarose gel. Southern blot analysis was performed with a radioactively labeled LMP1 cDNA probe. (B) Western blot analysis of LMP1 expression in the cell lines described above. Western blots were performed as described in the legend to Fig. 1, except that the S12 monoclonal antibody specific for LMP1 was used (40).
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FIG. 5. (A) Analysis of circular and linear EBV genomic DNA content by Gardella gel technique. (A) Two independently derived wild-type EBNA2-rescued LCLs (WT.1 and WT.2) and two independently derived PPR-EBNA2-rescued LCLs ( PPR.1 and PPR.2) were analyzed on a Gardella gel. Raji is a latently EBV-infected nonproducer cell line defective in lytic viral replication and, thus, possesses circular but lacks linear viral DNA (22). B95.8 is a marmoset-derived LCL that supports both latent and lytic infection by EBV and in which both linear and circular EBV genomes can be detected. DG75 is an EBV-negative lymphoma cell line. Cells (5 x 106) from each cell line were loaded per lane. The cells were then subjected to lysis by sodium dodecyl sulfate and digestion with proteinase K followed by electrophoresis in 1% agarose. Southern blot analysis was performed by using a radioactively labeled LMP1 cDNA probe. Migrations of circular (C) and linear (L) forms of EBV genomic DNA are indicated by arrows on the right.
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PPR-EBNA2 to rescue EBV-immortalized cell growth in a recently developed transcomplementation assay for EBNA2 function (16).
PPR-EBNA2 was able to support the immortalized phenotype of EBV-infected cells in a manner similar to that for wild-type EBNA2. However, the
PPR-EBNA2-expressing LCLs were distinctly different from wild-type EBNA2-expressing LCLs in that they harbored significantly lower EBV genomic DNA levels. In addition, the
PPR-EBNA2 protein consistently induced the latent membrane promoters, particularly LMP1, to higher levels than wild-type EBNA2 in transient cotransfection assays.
The data suggest that
PPR-EBNA2-expressing cells with higher EBV genome copy numbers have a selective growth disadvantage. One possible reason for this effect may be due to viral gene products whose expression is induced by EBNA2. The
PPR-EBNA2-transduced cells with more EBV genomes may express higher levels of EBNA2-induced genes, which could be inhibitory for proliferation. Reduction of target gene dosage would be one mechanism to compensate for these effects. A candidate viral protein potentially capable of mediating such an effect is LMP1, which is required for proliferation yet is cytostatic when overexpressed in B-cell lines (13, 28). In agreement with this hypothesis,
PPR-EBNA2 does appear to transactivate the LMP1 promoter to significantly higher levels than wild-type EBNA2 (Fig. 3A). However, our results do not exclude the possibility that other EBNA2 viral target gene products, such as LMP2A, could be responsible for the observed phenomenon.
A previous study indicated that deletion of the PPR from EBNA2 resulted in recombinant viruses unable to immortalize B cells and appears to contrast with our observations (53). The difference in outcomes between our study and the previous one is likely to be due to differences in assay conditions and certain features of the transcomplementation assay. The very fact that the
PPR-EBNA2-expressing LCLs grow out in our assay may be due to the inherent heterogeneity within LCLs in many parameters, including EBV genome copy numbers per individual cell (1, 51). At any given time a significant percentage of an LCL population possesses EBV DNA levels so low that cellular proliferation is reduced, as is expression of EBNA2 target genes (51). Therefore, upon transduction with the lentiviruses carrying the wild type or
PPR-EBNA2, different subpopulations with compatible EBV genome numbers may have a selective growth advantage. On the other hand, EBV-derived oriP-containing plasmids show a propensity for quick loss from cells in which they are stably maintained if marker selection is lifted (33, 46). Therefore, in the transcomplementation assay changes in viral genome load can quickly be selected for and can compensate for the effect of the PPR deletion. Compensation for EBNA2 hyperactivity through reduction of EBV genome levels may not be possible during immortalization by a recombinant
PPR-EBNA2 EBV when the EBNA2 and LMP1 genes reside on the same chromosome. A block in proliferation might be expected to occur shortly upon infection of B cells with a recombinant
PPR-EBNA2 virus due to overexpression of cytostatic levels of LMP-1. Interestingly, even the wild-type EBNA2-expressing estrogen-independent LCLs appear to have 2.4-fold lower average EBV genome content than the parental EREB cells (Fig. 4A). While the reason for this is unknown, it would be consistent with the idea that in the immortalized cell lines EREBNA2 protein function may be negatively affected by the fusion and may require greater genome numbers for optimal viral gene expression.
Our results are consistent with a model in which hyperactivity of
PPR-EBNA2 in stimulating one or more viral promoters rather than loss of function, as hypothesized previously, may be responsible for the inability of recombinant
PPR-EBNA2 EBVs to immortalize B cells. Replacement of EBNA2-responsive elements in EBNA2 target promoters with regulatable heterologous elements conferring EBNA2 independence would allow further testing of this hypothesis. Recent development of the bacterial artificial chromosome-EBV system now allows this to be technically feasible (11).
National Institutes of Health and American Cancer Society grants to P.D.L. supported this work.
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and PU.1. J. Virol. 69:253-262.[Abstract]
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