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Journal of Virology, June 2002, p. 5557-5564, Vol. 76, No. 11
0022-538X/02/$04.00+0 DOI: 10.1128/JVI.76.11.5557-5564.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Microbiology and Immunology, Medical University of South Carolina,1 Department of Mathematics, College of Charleston, Charleston, South Carolina2
Received 2 November 2001/ Accepted 17 February 2002
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One explanation for the apparent threshold density would be a requirement on the part of the phage for the host cell to be in a particular metabolic state and that this state is only reached when the cell density is 104 CFU/ml or more. Small molecules called autoinducers or quorum factors are known to be secreted into the environment by bacteria and, by their accumulation as the number of cells increases, to allow the bacteria to monitor their local population density (3). These soluble signaling molecules alter the expression of dozens of genes and thereby regulate the metabolic state when the sensing bacteria are exposed to them at a sufficient concentration. Quorum factors could therefore explain the dependence of phage replication on cell density if, for example, molecules that serve as phage receptors are expressed in response to quorum factors. However, the data to be presented below demonstrate no detectable quorum factor effect on the ability of phage to infect bacteria.
Here we propose an alternative explanation for the phenomenon that has been interpreted as a replication threshold density that can be extracted from the mathematical model of Schlesinger (12) and Stent (13). This model makes the assumption that phage rely entirely on chance encounters with their hosts, and so, in liquid culture at least, their ability to infect and reproduce can be entirely predicted by the equations that describe the movements and coagulation (irreversible binding) of inert colloidal particles under the influence of Brownian motion (12). In this model, one finds that
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It follows from equation 1 that, if the concentration of host cells, C, is lower, all else being equal, a larger fraction of the phage will remain unbound at time t. This has important consequences for the utility of the common term multiplicity of infection (MOI), which will be discussed in detail. To our knowledge, verification of Schlesinger's model of phage-host interactions over a range of host cell concentrations has never been carried out, no doubt in part because of the difficulty in quantitating the number of host cells infected by a lytic phage. We report here a series of experiments designed to rigorously test the model by using transducing phages M13K07 and P1 in which phage injection of reporter phagemids served as a surrogate marker for phage infection. As a result of these experiments, it will be demonstrated that, as predicted by the model, the rate of phage infection is dependent solely on host cell density and follows very closely the theoretical expectations given for interactions of two types of colloidal particles. In addition, it will be shown that at phage densities sufficient to ensure infection, low host cell density does not affect phage replication rates. In light of the significant impact host cell density has on infection rates, we propose that the term MOI with regard to bacteriophage be further refined so that MOIinput indicates MOI in its traditional sense, i.e., the simple ratio of input phage to input cells. The designation MOIactual would indicate the number of phage calculated to be bound per host cell at the end of the adsorption period according to Schlesinger's model and therefore the effective MOI in a given experiment. Finally, a simple method for calculating MOIactual is given and the implications for phage therapy applications are discussed.
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P1 phagemid system. A P1 phagemid was constructed with the pBBR122 vector (MoBiTec, Düsseldorf, Germany), which carries a kanamycin resistance gene for transfer detection, a broad-host-range origin of replication, and essential elements for P1 packaging. E. coli C600 host cells (Stratagene) susceptible to P1 infection were transformed with this phagemid and then infected with the wild-type phage P1 kc to produce a P1 phage lysate containing approximately 90% infectious phage and 10% transducing phage carrying the phagemid. E. coli C600 cells lysogenized with the P1 mutant P1CmC1.100 (9) are referred to as P1C600 cells and are immune to infectious P1 phage but are ready acceptors of P1-delivered phagemid (C. Westwater, unpublished results). P1C600 cells were grown in LB containing 17.5 µg of chloramphenicol/ml to maintain the lysogen. Phagemid delivery into P1C600 cells results in a kanamycin- and chloramphenicol-resistant colony when the bacteria are plated on 50 µg of kanamycin/ml and 17.5 µg of chloramphenicol/ml (Sigma). Dilutions of cells and phage lysate were performed with LB containing 10 mM MgSO4 and 5 mM CaCl2 with aerosol barrier tips.
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FIG. 1. Effect of conditioned medium on transduction efficiency. Actively growing E. coli (ER2738) cells in LB containing 20 µg of tetracycline/ml, in order to maintain the F' plasmid, were briefly chilled on ice before being diluted 10,000-fold in either fresh LB containing tetracycline or filter-sterilized conditioned medium isolated from logarithmic growth or saturated cultures of the same cells. Transducing M13K07 phage carrying plasmid pBlue-GFPuv were added to the corresponding cell suspensions. Duplicate transduction mixtures were set up in parallel that contained the same number of cells and phage but in 1/10 of the volume. All mixtures were incubated at 37°C for 30 min, and then aliquots were plated on LB agar containing IPTG in triplicate. After overnight incubation, all colonies were counted and the number of transduced colonies was detected by expression of green fluorescent protein. The mean percentage of colonies transduced under each condition is shown.
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Note that, as with traditional calculations of MOI, the calculations are based on starting conditions and cell proliferation is not accounted for. Therefore, the model is only accurate when the adsorption period, t, is sufficiently shorter than the doubling time of the cells. (Our experiments all used 30 min for E. coli, and good agreement between expected and observed results was obtained.)
It follows from equation 2 that as C or t become larger, MOIactual approaches MOIinput. This is logical since when the cell density is higher or more time is allowed for adsorption, more phage would be expected to bind. It is because MOIinput and MOIactual are essentially the same at high cell densities that the need for MOIactual may not have been previously apparent. The breakpoint at which MOIinput and MOIactual diverge can be specifically defined by introducing the special concentration as follows:
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Simply, is the lowest cell density at which MOIinput is equal to MOIactual for a given k and t. (For the derivation of , see appendix B.) In other words, if the host cell density is at this concentration or a higher concentration (C
), then MOIinput is equal to MOIactual for practical purposes and it is reasonable to assume that every phage added will bind to a cell within the adsorption period, t. Conversely, if C is less than , then MOIactual is noticeably less than MOIinput and MOIactual should be used. Note that is dependent on t and decreases as t increases for a given phage-host system.
Predictive value of MOIactual. We claim that using the traditional MOI, MOIinput, will result in incorrect expectations of infection rates in any case in which C is less than and that using MOIactual in its place will provide an accurate means of estimating the infection rate at any cell density. These claims were tested by using phage transduction of reporter phagemids as a surrogate for phage infection.
In the first experiment, host cells and transducing P1 phage lysates were combined over a range of cell densities by mixing a fixed number of phage with an equal volume of one of several 10-fold dilutions of cells. After 30 min of incubation, half of each mixture was plated on agar selective for cells that received the phagemid and half was plated on nonselective agar to control for cell death and growth. To test the model against the data collected in this experiment, the following formula was used to convert the ratio of phage to cells into the number of transduced cells: Expected fraction of cells infected = 1 - e-MOI (see appendix A). To obtain the expected results based on the traditional MOI, the MOIinput for a given incubation was used in the formula and the fraction obtained was multiplied by the number of cells in that incubation mixture. To obtain the expected results predicted by the model presented in this report, the same computations were performed using MOIactual in place of the MOIinput. Figure 2A shows the number of infected cells found experimentally and the number predicted by assuming that the ratio of bound phage to cells is given by the MOIactual or the MOIinput, respectively. Note that predictions of the MOIactual fit the data better both qualitatively and quantitatively. Also, as predicted, the graphs are essentially the same at cell densities higher than . At low cell densities, the expected results for the MOIinput decrease because cell numbers are limiting.
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FIG. 2. A fixed number of phage with serial dilutions of host cells. (A) Approximately 400 PFU of P1 transducing phage were incubated with serial dilutions of P1C600 host cells at the cell densities indicated for 30 min and then plated on kanamycin to select for cells that had been transduced with the reporter phagemid. (B) Approximately 400 PFU of transducing phage M13K07 were incubated with serial dilutions of ER2738 host cells at the cell densities indicated for 30 min and then plated on carbenicillin and X-Gal to select for cells that had been transduced with reporter phagemid pBlue-GFPuv. The expected number of transductants for each cell density was calculated as either N(1 - e-MOIactual) ( ) or N(1 - e-MOIinput) ( ). , observed numbers of transductants.
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Figure 2B shows the same type of experiment performed with phage M13K07. Again, predictions based on the MOIactual modeled actual results much more accurately than those based on the MOIinput. Because of the very small k (3 x 10-11 cm3/min) and, consequently, the very large for this phage, it was not practical to achieve cell densities at which the MOIinput and MOIactual are essentially the same.
Universal infection at low cell densities. for M13 phage, based on a k of 3 x 10-11 (14) and a time t of 30 min, is 1010 cells/ml. for P1 phage, based on a k of 2.3 x 10-9 and a time t of 30 min, is 1.3 x 108 cells/ml. Therefore, the model predicts and the previous experiment confirmed that at any cell density lower than these concentrations, an MOIinput of 10 will be inadequate to achieve infection of 99.99% of the cells. However, this does not necessarily imply that it is impossible to achieve universal infection at cell densities significantly lower than . In fact, it is possible to explicitly determine the MOIinput required to achieve an MOIactual of 10 for arbitrary cell densities. By using equation 2, the necessary numbers of phage were calculated for phages P1 and M13 over a range of cell densities (Table 1). Theoretically, using these values should result in the infection of nearly every cell in a given sample, regardless of cell density.
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TABLE 1. Predicted number of input phage sufficient for infection of 99.99% of cells according to cell densitya
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FIG. 3. A fixed number of cells with serial dilutions of phage. Nine dilutions of transducing phage M13K07 lysate carrying phagemid pBlue-GFPuv were used to infect nine aliquots of 200 CFU of ER2738 host cells at a cell density of 1,000 CFU/cm3. After 30 min of incubation at 37°C, each reaction mixture was plated on nonselective LB agar containing IPTG and X-Gal. The percentages of blue colonies and green fluorescent protein-positive colonies were determined by direct counting and are plotted as the observed values (closed symbols). Expected values (open symbols) were calculated by finding the MOIactual for each set of reaction conditions in the experiment and multiplying the total number of colonies observed in each sample by its respective value for 1 - e-MOIactual. The results of two independent dilution series are shown. (tu, transducing units.)
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This problem of detection is overcome if the progeny phage are different from the input phage. The strategy utilized here was to make use of the M13K07 helper phage's 500- to 1,000-fold preference for packaging phagemids over its own defective genome (4). If the host cells carry the phagemid pBluescript, then the majority of the progeny phage will produce blue, ampicillin-resistant colonies when the titer is determined on susceptible cells, whereas the input phage will produce only white, kanamycin-resistant colonies, easily allowing differentiation of the progeny phage from the input phage.
This experiment was set up such that actively growing pBluescript-carrying host cells were diluted in 10-fold increments and each dilution was mixed with 1010 M13K07 phage, which is an amount adequate to ensure infection of most of the cells even at 10 CFU/cm3 or a lower concentration (Table 1). Blue colonies representing the output titer at each cell density after 60 min are plotted in Fig. 4. The experiment was performed twice with different host cell lines and with slightly different phagemids with very similar results. Most importantly, the straight lines evident on this log-log plot indicate that, on average, the same number of progeny phage are being produced per host cell regardless of the cell density. This observation is inconsistent with the existence of a replication threshold density.
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FIG. 4. Phage replication at low host cell densities. Actively growing NovaBlue E. coli bacteria carrying the pBlue-GFPuv phagemid (
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When Pmin was plotted over a range of Ns (Fig. 5) for phages M13 and P1 with M = 10, t = 30 min, and V = 1 cm3, several interesting features of this function were observed. First, when C is greater than , the graph of the function is essentially linear and indistinguishable from the function MN. However, at cell concentrations lower than
, Pmin behaves very differently. As shown in Fig. 5, it has a lower bound and is almost horizontal for most N's giving concentrations less than . This has the unexpected consequence that almost the same number of phage are needed to infect 99.99% of 106 cells as to infect 10 cells. By using L'Hospital's rule for computing limits of indeterminate forms, it can be deduced that no matter how small the number of cells (N) is, M cannot be achieved with less than
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FIG. 5. The Pmin (M, N) function as related to cell density. The Pmin function (equation 4) for phages M13 () and P1 ( ) is plotted as a function of host cell density for an adsorption time of 30 min, a volume of 1 cm3, and an MOIactual of 10. Note that for all cell concentrations less than , Pmin is essentially the same.
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Our finding that there is no detectable replication threshold for the M13 bacteriophage in E. coli is at odds with the findings of Wiggins and Alexander (16), who consistently saw a lag in phage production when host cell densities were lower than 104/ml. A partial explanation, as mentioned above, may lie in the difficulty of detecting progeny phage against a background of input phage. In addition, since the three phages Wiggins and Alexander used to demonstrate a replication threshold density were all somatic phages, adsorption constants would be expected to be similar in magnitude to that for phage P1, and so it is possible to reanalyze their data with our present mathematical model. Based on their graphs of phage and cell concentrations over time, starting phage concentrations in their experiments ranged from approximately 200 to 1,100 PFU/ml in a volume of 50 ml for a total input phage population of 10,000 to 55,000 PFU. It can be easily deduced from equation 3 that at cell densities lower than 104/ml, these initial conditions would result in an average of 0.7 to 4 phage binding cells within 30 min, respectively (the fraction of phage bound multiplied by the number of input phage equals 0.00007207 x 10,000 or 55,000). This would result in insufficient progeny phage to be detected against the input phage population. At 104 cells/ml, 7 to 40 phage will bind cells within 30 min, which would produce a 7 to 9% increase in the phage population, respectively, after the latency period, assuming a burst size of 100. Since phage removal from solution by adsorption to cells is negligible at this cell density, this increase would be detectable against the input phage population, resulting in the apparent existence of a replication threshold density of 104 cells/ml. It should be clear from our results that an increase in the number of input phage would have resulted in a decrease in the apparent replication threshold density. Likewise, a phage with a lower adsorption rate constant, such as M13, would have resulted in a higher apparent replication threshold density of approximately 106 cells per ml under the same conditions.
The confirmation of this mathematical model also has implications for the use of phage as antimicrobial therapeutic agents. Payne et al. (7, 8) developed a mathematical model of lytic phage therapy treatment of bacterial infections in vivo in which they argue that administration of therapeutic phage must be carefully timed to coincide with a sufficiently dense bacterial population to support phage proliferation in order to be effective, similar to the replication threshold. Our results confirm that host cell density is essential to estimating what percentage of administered phage will find target cells within a given period of time and that progeny phage will be detectable sooner at higher initial cell densities. However, our data demonstrate that there is no replication threshold density of host cells independent of the phage population and adsorption constant. In vivo bacterial infections are also complicated by nonuniform dispersal of the target bacteria in the body and the absence of any technique by which to rapidly enumerate and map the distribution of such populations. In addition, the larger the target bacterial population at the time that it is treated and killed, the larger the release of endotoxin and the chance that lethal septic shock will follow. Therefore, given that we have demonstrated that it is possible to infect every target cell in a given volume even when the cells are at very low densities and that it takes no more phage to do so than to infect all of the cells in a much denser population, it seems that the safest course of action in vivo is always to use as many phage as necessary to infect all of the target cells with the first dose. Then treatment can begin at the earliest possible time and replication of the phage is not necessary.
It has also been observed that many phages that proliferate on a given host in vitro fail to do so in vivo (7). This fact, as well as concerns that lytic phage may facilitate the transfer of toxic genes from pathogenic bacteria to commensal flora, has encouraged the development of nonreplicating phage therapeutics. In the lethal agent delivery system (6), nonreplicating phage function as molecular syringes that inject phagemids expressing bacterial suicide genes resulting in cell death. Due to the inability of lethal agent delivery systems to proliferate in vivo, there is no question of the necessity of being able to deliver such a lethal phagemid to every bacterial cell in a given culture, or infected individual, for a therapeutic antimicrobial result. Our results showing transduction of every cell in aliquots of bacteria in vitro suggest that delivery of bactericidal agents by nonreplicating phage may indeed be a viable antimicrobial strategy.
In conclusion, the rate at which phage bind to cells is very accurately predicted by Schlesinger's equation (equation 1). Four factors determine how many bacteria will be infected or transduced by phage in a given situation: the density of host cells, the adsorption constant of the phage, the number of phage, and the length of time for which they interact. The simple ratio of virus particles to cells given by the MOI is meaningless in the absence of information about these other parameters. Furthermore, the virologist's rule of thumb that an MOI of 10 be used in order to ensure that 99.99% of the host cells are infected by at least one virus particle is dependent on the assumption that all of the virus added will be bound to cells by the end of the adsorption period. We have shown that this is only a valid assumption for bacteriophage when host cells are present at densities equal to or greater than concentration , which is, in turn, dependent on the adsorption constant of the phage and the length of the adsorption period. We have also shown, however, that it is possible to accurately estimate the fraction of phage bound at any cell concentration and arbitrary time. More generally, adoption of the value MOIactual in place of the value MOI results in a rule of thumb in which the fraction of input phage bound in the time allowed is taken into account and reproducibility between experiments will be greatly enhanced.
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with the equation
= [ln(10,000)/kt]
9.2/kt. In fact, since -k
t = [ln(10,000)kt]/kt = -ln(10,000) = ln(0.0001), it follows that for any C that is greater than
as defined above, MOIactual/MOIinput = (1 - e-kCt) > (1 - e-k
t) = [1 - eln(0.0001)] = 1 - 0.0001 = 0.9999.
We thank M. B. Yarminlinsky for providing bacteriophage P1CmC1.100 and Phillip A. Werner for preparing the P1 phagemid-containing lysate.
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