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Journal of Virology, February 2001, p. 1968-1977, Vol. 75, No. 4
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.4.1968-1977.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Signals for Bidirectional Nucleocytoplasmic
Transport in the Duck Hepatitis B Virus Capsid Protein
Helene
Mabit,
Klaus M.
Breiner,
Andreas
Knaust,
Beate
Zachmann-Brand, and
Heinz
Schaller*
Mikrobiologie and Zentrum für
Molekulare Biologie, Universität Heidelberg, 69120 Heidelberg, Germany
Received 31 August 2000/Accepted 16 November 2000
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ABSTRACT |
Hepadnavirus genome replication involves cytoplasmic and nuclear
stages, requiring balanced targeting of cytoplasmic nucleocapsids to
the nuclear compartment. In this study, we analyze the signals determining capsid compartmentalization in the duck hepatitis B virus
(DHBV) animal model, as this system also allows us to study
hepadnavirus infection of cultured primary hepatocytes. Using fusions
to the green fluorescent protein as a functional assay, we have
identified a nuclear localization signal (NLS) that mediates nuclear
pore association of the DHBV nucleocapsid and nuclear import of DHBV
core protein (DHBc)-derived polypeptides. The DHBc NLS mapped is
unique. It bears homology to repetitive NLS elements previously
identified near the carboxy terminus of the capsid protein of hepatitis
B virus, the human prototype of the hepadnavirus family, but it maps to
a more internal position. In further contrast to the hepatitis B virus
core protein NLS, the DHBc NLS is not positioned near phosphorylation
target sites that are generally assumed to modulate nucleocytoplasmic
transport. In functional assays with a knockout mutant, the DHBc NLS
was found to be essential for nuclear pore association of the
nucleocapsid. The NLS was found to be also essential for virus
production from the full-length DHBV genome in transfected cells and
from hepatocytes infected with transcomplemented mutant virus. Finally,
the DHBc additionally displayed activity indicative of a nuclear export signal, presumably counterbalancing NLS function in the productive state of the infected cell and thereby preventing nucleoplasmic accumulation of nucleocapsids.
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INTRODUCTION |
Viruses that replicate in the
nucleus have evolved means to transport their infecting genome through
the cytoplasm towards and into the nucleus. As described previously for
adenovirus and herpesviruses, viruses typically exploit the preexisting
cellular nucleocytoplasmic transport machinery for targeting the
nucleocapsid to the nuclear pore, where the genome is released and
imported as a more or less complex nucleoprotein, as exemplified by
lentiviruses or influenza viruses (12, 17, 21, 42).
Nuclear targeting of the nucleocapsid is of particular importance in
the case of the hepadnaviruses (hepatitis B viruses [HBVs]), small,
enveloped animal viruses, which replicate their circular, partially
double-stranded DNA genome only in part in the nucleoplasm. There, the
incoming genome matures into an extrachromosomal, covalently closed,
circular DNA molecule, the template for genomic RNA synthesis through
the cellular transcription machinery (10, 29). The
following steps, reverse transcription and plus-strand DNA synthesis,
occur inside cytoplasmic nucleocapsids, giving rise to mature core
particles. Of these, a fraction is diverted from the major pathway
leading to the export of the enveloped virion, thereby serving to
establish an elevated intranuclear pool of genome copies early on and
to replenish this pool throughout persistent infection
(41). For duck HBV (DHBV), it is well established that
nuclear targeting of nucleocapsids is negatively influenced by the
presence of the large envelope protein (L-protein), whose levels
determine the fraction entering the export pathway and whose absence
leads, by default, to much enhanced levels of intracellular
nucleocapsids and of nuclear DNA genomes (40). However,
comparable studies with HBV genomes lacking L-protein expression, using
transfected or transduced cultured cells or HBV transgenic mice as
experimental systems, failed to detect any evidence that such a
mechanism might also be operating and of similar importance for the
mammalian hepadnaviruses (M. Sprinzl, U. Protzer, C. Kuhn, and H. Schaller, unpublished data). Thus, an additional mechanism is expected
to control import of progeny hepadnavirus genomes in general, possibly involving a (potentially regulatable) nuclear localization signal (NLS)
on the nucleocapsid surface, i.e., in the amino acid sequence of the
core protein, the only constituent of the outer shell of the nucleocapsid.
Early studies with the HBV prototype revealed the presence of one or
several NLSs overlapping with a cluster of arginine repeats close to
the C terminus of the capsid protein (7, 44). More-recent studies with recombinant capsids in digitonin-permeabilized cells further support the notion that these sequences participate in targeting HBV capsids to the nuclear pore in an importin
/
-mediated fashion (20). While these observations
gave the first, although indirect, experimental evidence in support of
the model that the NLS-containing carboxy terminus of the core protein
subunit was exposed on the surface of the nucleocapsid, surface
disposition of the core protein carboxy terminus had previously been
demonstrated directly for DHBV by use of a sequence-specific antiserum
(38). However, there are no comparable arginine-rich
elements in this part of the avian viral protein. This discrepancy is
paralleled by the fact that the core proteins of the avian and
mammalian viruses differ in length (262 versus 183 residues,
respectively) and display only little overall sequence homology
(39). Thus, the question arises whether mammalian and
avian HBV use different mechanisms for nuclear targeting of the virus
genome to the cell nucleus.
Another more general, unresolved question is how the
intracellular localization of the core protein (and of newly
synthesized subunits) is regulated at different stages of the
hepadnavirus life cycle. As outlined above, the incoming
nucleocapsid, as well as a subfraction of progeny capsids, must attach
to the nuclear pore, whereas this appears to be avoided for newly
synthesized protein subunits. Reportedly, these remain predominantly
(in the case of mammalian HBVs) or exclusively (in the case of avian
HBVs) in the cytoplasm, 240 subunits each coassembling with genomic RNA
and DNA polymerase-reverse transcriptase to cytosolic
nucleocapsids. Intranuclear assembly of (empty) capsids may,
nevertheless, occur under special experimental circumstances, such as
in the HBV transgenic mouse (8, 13, 14), in chronically
infected HBV patients (2), or in certain HBV core protein
(HBc)-expressing cell lines after cell-cycle synchronization by serum
starvation (45). These observations predict the existence
of a yet unknown mechanism that normally prevents the core protein
subunit (and probably also the immature RNA-containing capsid) from
entering and accumulating in the nucleoplasm.
Results from various experimental systems suggest that phosphorylation
may play a major role in regulating signal-mediated nucleocytoplasmic
transport of the hepadnaviral core protein. While agreeing on the
general importance of phosphorylation, these data are in conflict in
detail: mutational analysis in transfected cells of phosphorylation
target sites supports an inhibitory function (23), whereas
NLS activation through phosphorylation is suggested by the results of
capsid transport studies in a cell-free system (20).
We have started to address these questions with the DHBV animal model,
as this system allows us to study hepadnavirus nucleocapsid targeting
at the molecular level, including bona fide infection of cultured
primary duck hepatocytes (PDHs). Following a previous report detecting
a close correlation of capsid maturation with DHBV core protein (DHBc)
dephosphorylation and envelope protein-independent membrane attachment
as steps preceding cytosolic capsid envelopment (24), the
present study concentrates on defining the signals that control nuclear
targeting of nucleocapsids. Using fusions to the green fluorescent
protein (GFP) as a functional assay, we have identified a single NLS in
the DHBc sequence and show that this signal is of functional importance
for the targeting of the DHBV nucleocapsid to the nuclear pore.
Furthermore, we present evidence indicating that the DHBc also contains
an activity directing its nuclear export, a property explaining its
overall cytoplasmic localization despite the presence of the mapped NLS.
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MATERIALS AND METHODS |
Plasmids.
pCD16, previously also designated pCD0, a plasmid
carrying the full-size DHBV genome (subtype 16 [see reference
25]), starting at position 2520, under the control of the
cytomegalovirus (CMV) immediate-early promoter-enhancer (CMV promoter),
and the helper construct pCD4 lacking part of the 5'-proximal RNA
packaging signal
have been described elsewhere (1, 31,
33). pCDcore, a plasmid expressing the DHBc as the only gene
product, is a derivative of pCD4 lacking DHBV sequences between DHBV
positions 863 and 2295. pCGFP was derived from pCD16-S-GFP
(33), a derivative of pCD16 encoding the GFP open reading
frame (ORF) instead of the S gene (from KpnI, position 1290, to BstEII, position 1847), by removing the DHBV sequence
between the SalI and XhoI sites (1.7 kb) between
positions 2522 and 1212, thereby placing the start site of CMV
promoter-driven transcripts some 170 nucleotides upstream of the S gene
AUG fused to the GFP gene. We furthermore removed the downstream
sequence copy of the packaging signal
(between AflII and
XbaI, positions 2526 to 2662). To facilitate DHBc sequence
fusions to the C terminus of GFP, we introduced a synthetic
polylinker (multiple cloning site [MCS],
GTCAAGCTTCATCGATTGCATGCGAATTCGCAGATCTCCCTCGCCTAGGAAATAAGGTTACC) at the 3' end of the GFP ORF, replacing the GFP stop codon
with a continuous coding sequence containing the unique recognition sequences (underlined) for restriction enzymes HindIII,
ClaI, SphI, and EcoRI (in that order)
followed by the last 21 nucleotides of the DHBc ORF, including the DHBc
stop codon (containing unique BglII and AvrII
restriction sites [also underlined]), and a BstEII restriction site. All cleavage sites in the MCS are placed so as to
allow in-phase fusions to DHBc sequences using preexisting homologous
sites in the DHBc gene. Deletion constructs pGFP/C67-262 and
pGFP/C125-262 were obtained by inserting DHBc gene fragments from
SphI to BglII (positions 2843 to 391), or from
EcoRI to BglII (positions 3017 to 391),
respectively. To create plasmid pGFP/C5-262, which contains a nearly
full-length core protein sequence, we transferred a
ClaI/BglII fragment from plasmid pCD10 (which
differs from pCD16 by an A-to-G exchange at position 10 in the core
gene, introducing a ClaI restriction site and resulting in
an N-to-D exchange at codon 4 [see reference 1]). To
generate core fusions terminating at amino acid position 226, we used
as a donor for PCR amplification plasmid pC226 which carries a stop
codon at core position 227 (38). pGFP/C184-226 was
obtained after introducing an EcoRI restriction site
upstream of codon 184 with primer
CGGAATTCCCGACCATTGAAGCA and a reverse primer
corresponding to DHBV 435 to 418. pGFP/C125-183 was generated using the
reverse primer CGAGATCTTTAGGCATCTCTACC, ending at position 163, and introducing a stop at codon 184 (bold) followed by a BglII restriction site (underlined).
The PCR products produced were digested with EcoRI and
BglII and inserted into pCGFP-MCS.
For construction of a tandem repeat GFP dimer, we amplified by PCR the
GFP gene from plasmid pCGFP using primers
CTGTACAAGTCAATCGATGCC and
CCGAAGCTTGATGTCTGGTACCATG, introducing
HindIII and ClaI restriction sites
(underlined) at the 5' and 3' termini of the GFP gene, respectively. The PCR product was then inserted into pGFP-MCS between ClaI
and HindIII at the GFP-DHBc junction, generating the
plasmid p2xGFP-MCS. To construct p2xGFP/C67-262, a DHBc sequence (from
position 67 to 262) was introduced as described above for pGFP/C67-262.
For the construction of the GGE mutation, inactivating the DHBc-NLS, we
used two complementary mutation primers, CGAACCTAGAGGAGGAGAAGTTAAA and TTTAACTTCTCCTCCTCTAGGTTCG, and two external
primers (positions 2546 to 61 and 435 to 418, respectively). The final
PCR product produced was digested with SphI and
AvrII and ligated into
SphI/AvrII-digested pCGFP-MCS, creating
pGFP/C67-262-GGE; the mutation was thereafter transferred into pCD16,
creating pCD16-GGE.
GFP fluorescence and immunofluorescence analysis.
Cells from
the human hepatoma cell line HuH7, cells from the embryonic kidney cell
line 293, or HeLa cells were cultivated on coverglass chamber slides
(Nunc) and transfected with the respective plasmids by using a standard
calcium phosphate protocol (24). At 1 to 2 days after
transfection, the GFP fluorescence was analyzed with a Leica TCS NT
confocal laser scanning microscope (63×, 1.2 objective). For
immunofluorescence analysis the cells were fixed 3 to 4 days after
transfection with 4% formalin in phosphate-buffered saline (PBS) for
30 min, permeabilized with 0.25% Triton X-100 in PBS, and
coimmunostained with the rabbit anti-DHBc (raised against E. coli-derived full-length DHBc [37]) and/or
anti-nuclear pore complex (NPC) monoclonal antibody 414 (kindly
provided by Dirk Görlich, ZMBH, Heidelberg, Germany) and,
subsequently, with fluorescein- or tetramethylrhodamine-conjugated
secondary antibodies. Fluorescence was analyzed with a Leica DM IRB
inverted fluorescence microscope (20×, 0.40 objective) equipped with
an automatic camera and the Leica TCS NT confocal laser scanning
microscope as described above. Sequential excitation and scanning of
the two fluorescent channels (separate excitations at 488 and 568 nm)
were used to avoid cross-bleeding of the fluorochromes between channels.
Analysis of DHBc NLS knockout mutant (D16-GGE) in transfected
cells.
LMH cells, from a chicken hepatoma cell line
(3), in a 10-cm-diameter cell culture dish (about
107 cells) were transfected with 20 µg of either plasmid
pCD16, plasmid pCD4, or plasmid pCD16-GGE, and lysed 4 days
posttransfection by suspension in 1 ml of 10 mM Tris-HCl (pH 7.5)-1 mM
EDTA-1% NP-40. After removal of the cell nuclei by 10 min of
centrifugation in a microcentrifuge, the cytosolic fraction was
subdivided into several aliquots and capsids were pelleted by
ultracentrifugation (TLA45 rotor, 44,000 rpm, 1 h). For Western
blotting and primer extension analysis, this step included
sedimentation through a step gradient consisting of 200 µl of 20%
and 50 µl of 60% sucrose. To determine the relative fraction of DHBc
in pelletable capsids, equal aliquots from the pellet and the
supernatant, as well as of the cytosol prior to centrifugation, were
analyzed with a Western blot probed with a polyclonal anti-core protein
antiserum (D087) as described previously (24). Proteins
were visualized by enhanced chemiluminescence (Amersham) according to
the manufacturer's manual. For primer extension analysis detecting 5'
termini of genomic RNA (31), encapsidated RNA was
liberated by prior proteinase K digestion, followed by extraction with
phenol-chloroform and ethanol precipitation. The primer chosen
(5'-CCCTGTGTAGTCTGCCAGAAGTCTTC-3', nucleotide positions 2843 to 2818) yielded the expectedly sized cDNA extension product of 310 nucleotides (Fig. 4B). Before Southern blotting according to standard
protocols (36), free DNA was largely removed by treating
the pelleted capsids with pancreatic DNAse, before starting proteinase
K digestion.
Virus production and PDH infection with DHBV-GGE.
For the
production of recombinant DHBV, LMH cells in a 10-cm-diameter dish were
cotransfected using a calcium phosphate protocol with 10 µg each of
the pCD16-GGE DNA and helper pCD4. Cell culture medium containing
recombinant virions collected from days 3 to 6 posttransfection was
concentrated 10- to 50-fold by precipitation with 6.5% polyethylene
glycol 20,000-0.9% NaCl at 0°C and stored in PBS-10% glycerol at
20°C until further use. Wild-type DHBV was produced by transfecting
the pCD16 DNA, accordingly. Virus titers were determined (as
DNA-containing enveloped viral particles) by density-gradient
centrifugation and dot blot analysis relative to an DHBV DNA standard
(31). PDHs were prepared and cultured essentially as
previously described (15). For infection, wild-type or
recombinant DHBV particles (to a multiplicity of infection of 10 or
100, respectively) were applied to a 12-well culture dish containing
about 8 × 105 cells per well. After 14 h of
incubation, the cells were washed and further cultivated. After 5 or 8 days, the cells were fixed and immunostained for the DHBc as described above.
Heterokaryon assay.
Nucleocytoplasmic shuttling was detected
by using a heterokaryon assay (32, 35). HeLa cells were
transfected with plasmid p2xGFP/C67-262, using the calcium phosphate
method. Twenty-four h after transfection, the cells were trypsinized
and 106 cells were seeded on a 6-well tissue culture dish
together with 2 × 106 (murine) BALB/c 3T3 cells.
After 18 h, the cells were treated for 30 min with culture medium
containing 50 µg of cycloheximide (Sigma) per ml. To induce cell
fusion, the cells were then covered with a solution of 50% (wt/vol)
polyethylene glycol 8,000 (Sigma) in Dulbecco's modified Eagle's
medium (DMEM) for 2 min at 37°C. The cells were washed extensively
with PBS and further cultured in DMEM-10% PBS containing
cycloheximide (50 µg/ml). Ninety minutes later, the cells were fixed
with 4% paraformaldehyde in PBS for 15 min, followed by
permeabilization with 0.2% Triton X-100 in PBS (20 min). Finally,
cells were washed in PBS containing bis-benzimide (2 µg/ml) for staining of the nuclei. The nuclei staining pattern as
well as the fluorescence was examined by a Leica DM IRB inverted fluorescence microscope (20×, 0.40 objective).
 |
RESULTS |
A fraction of intracellular core protein localizes to nuclear
pores.
Indirect immunofluorescence experiments were performed to
assess whether DHBV capsids bind to the NPC, as observed for their HBV
counterparts in permeabilized cells (20). The hepatoma
cell line HuH7 was transfected with plasmid pCD16, which produces a full-size, replication-competent DHBV RNA pregenome under the control
of the CMV promoter (1, 31). Cells were fixed at day 3 to
4 posttransfection, immunostained for DHBc and analyzed by fluorescence
microscopy. As shown in Fig. 1A, core
protein-specific staining was predominantly localized in the cytoplasm
of the transfected cells. While this was consistent with similar
results from previous studies (e.g., see references 9 and
45), we additionally observed a distinct core-specific
staining at the periphery of the cell nuclei. This perinuclear staining
was particularly evident in cells with low cytoplasmic staining (Fig.
1A).

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FIG. 1.
A fraction DHBV core antigen associates with nuclear
pores. (A) HuH7 cells, transfected with pCD16, carrying an overlength
DHBV genome, were fixed, immunostained for DHBc using a
fluorescein-conjugated secondary antibody, and analyzed by conventional
fluorescence microscopy. The perinuclear staining is seen best in cells
with low cytoplasmic staining (cells at bottom right). (B) Analogously
treated cells, costained for core protein using a
fluorescein-conjugated secondary antibody (core [left] subpanel) and
NPC using a tetramethylrhodamine-conjugated secondary antibody (NPC
[right] subpanel) and analyzed with a confocal laser-scanning
microscope. Arrows mark identical sites in the subpanels.
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To examine whether the perinuclear core protein detected by
conventional fluorescence microscopy was localized at the nuclear pores, DHBV-transfected cells were further analyzed at the higher resolution of the confocal laser scanning microscope after
coimmunostaining with the NPC-specific monoclonal antibody 414. As
shown in Fig. 1B, again most of the intracellular core protein was
detected in the cytoplasm, with an additional punctuate staining at the nuclear membrane, the latter signal superimposable with the NPC staining (Fig. 1B). Nuclei, visualized by NPC staining, in neighboring, apparently untransfected cells (Fig. 1B, right panel) did not display
any DHBc signal (Fig. 1B, left panel), demonstrating the selectivity of
the antibody used. NPC binding of DHBc similar to that observed with
the full-length DHBV genome, was also observed in analogous experiments
with cells transfected with plasmid pCDcore which expresses the core
protein as the only DHBV gene product (data not shown), indicating that
nuclear pore association was an intrinsic property of the DHBc, not
requiring the cooperation of any other viral gene product.
The DHBc sequence contains an NLS.
To confirm the presumed
presence of an NLS in the DHBc, the full-length protein sequence, or
different fragments thereof, were fused to the GFP. A series of such
carboxy-terminal fusion constructs (schematically depicted in Fig.
2A) (for details, see Materials and
Methods) was expressed in transfected HuH7 cells, and the cellular
distribution of the respective fusion proteins was analyzed by confocal
microscopy by detecting the GFP fluorescence in live cells. Proper
expression and intactness of the fusion proteins was ascertained by
Western blotting of cellular lysates with only proteins of the expected
size, and no degradation products, being detected with both anti-core
protein and anti-GFP antibodies (data not shown).

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FIG. 2.
Deletion mapping of the DHBc NLS. (A) Schematic
representation of the GFP-core fusion proteins used, with the numbers
representing positions in the core protein amino acid sequence. The
names, indicating the limits of the various fusions, are indicated on
the right. The letters designating individual constructs (shown at
left) correspond to images shown in panel B. (B) Cellular distribution
after expression in transfected HuH7 cells of the proteins whose
constructs are shown in panel A. GFP fluorescence in live cells was
analyzed using a confocal microscope, at day 1 or 2 posttransfection.
Two fluorescence micrographs showing the distribution of unfused GFP
protein as a control are depicted on the left. The apparent decrease of
the GFP signal at the periphery of the cell in the xy plane
(GFP xy subpanel) reflects the shape of these cultured
cells. Analysis of the signal in the xz plane (GFP xz
subpanel) showed a homogeneous distribution of the protein.
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Typical results of the fluorescence analysis are shown in Fig. 2B.
First, in a control experiment testing expression of GFP unfused, the
fluorescence was found to be distributed homogeneously throughout the
cell (with somewhat weaker staining in the nucleoli), freely diffusing
through the nuclear pores as expected for a protein of 30 kDa (Fig. 2B,
subpanels GFPxy and GFPxz). Fusion of GFP to the essentially complete
core sequence (GFP-C5-262) led to a cytoplasmic localization of the
fluorescent GFP signal (Fig. 2Ba), probably reflecting the size of
capsids assembled from GFP-C5-262, which precludes passage through the
nuclear pore (20). In contrast, deletion of the first 67 core protein amino acids, expected to abrogate capsid assembly
(43), yielded a predominantly nuclear fluorescence (Fig.
2Bb), thus confirming the presumed presence of an NLS in the DHBc.
Deleting the core sequence further, N terminally up to amino acid 125 or C terminally to amino acid 226, did not affect the distinct nuclear
localization of the respective fusion proteins (Fig. 2Bc and d), which
locates the NLS in the DHBc sequence between amino acids 125 and 226. This sequence was further split into two fusions containing DHBc amino
acids 125 to 183 or 184 to 226, respectively (Fig. 2A, constructs e and
f). Of these, only the fusion protein GFP-C184-226 was found to locate
to the nucleus, whereas the GFP fusion to the N-terminal part amino
acids 125 to 183 remained exclusively cytoplasmic (Fig. 2Bf and e,
respectively), a finding suggesting the presence of a nuclear export
signal (NES). Interestingly, the various GFP fusions differed
reproducibly in their intranuclear staining pattern, suggesting a
specific interaction of the sequences flanking the NLS-containing core
segment with cellular nucleoproteins in defined subnuclear domains; for
example, fusion protein GFP-C67-262 always showed a granular nuclear
pattern (Fig. 2Bb), whereas GFP-C184-226 appeared to be preferentially enriched in the nucleoli (Fig. 2Bf). Taken together, these data indicate the presence of an NLS between positions 184 and 226 of the
DHBc amino acid sequence.
A basic stretch of amino acids within core protein amino acids 184 to 226 is essential for NLS function.
A classical NLS consists of
either a single or bipartite stretch of basic amino acid residues
(18, 19, 34). The DHBV core sequence from position 184 to
226 contains such a run of basic amino acids (214PRRRKVK220), with
features resembling those of a classical signal (Fig.
3B), while a second basic element, 227RRRSKSRERR236, lies just outside of the DHBc segment showing NLS
activity. To test whether the predicted signal was functionally important, we introduced, in the context of fusion protein
GFP-C67-262, a triple mutation, changing amino acids 216 to 218 from
RRK to GGE (Fig. 3B). The mutant and the corresponding wild-type
plasmids were transfected in parallel into HuH7 cells, and the
distribution of the fusion proteins as indicated by GFP fluorescence
was analyzed by confocal microscopy (Fig. 3C). As already shown above
(Fig. 2B), the GFP-C67-262 wild-type protein was located in the nuclei in a granular pattern (Fig. 3C, subpanel RRK). In contrast,
introduction of the triple mutation led to an exclusively cytoplasmic
localization, indicating the abrogation of nuclear import (Fig. 3C,
subpanel GGE). We therefore conclude that amino acids 216RRK218 are an essential part of the DHBc NLS detected and that, furthermore, this
signal probably encompasses the sequence 214PRRRKVK220, fitting the
classical basic NLS type. This conclusion was further supported by the
lack of nuclear import of a GFP fusion to DHBc 133-214, in which the
signal proposed above had been deleted (pGFP/C133-214; M. Windisch, H. Mabit, and H. Schaller, unpublished data). Finally, our results also
rule out that the presence of the neighboring basic element mentioned
above, located just downstream of position 226, is essential for the
function of the DHBc NLS identified. Thus, the DHBc appears to contain
only a single, monopartite NLS sequence.

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FIG. 3.
Mutations in DHBc NLS abrogate NLS function. (A and B)
Schematic representation of the mutations introduced, with the numbers
above the diagram indicating amino acid positions. The mutational
exchanges in the DHBc sequence are shown below, with the cluster of
basic residues boxed. (C) Cellular distribution in transfected HuH7
cells of GFP-C67-262 (RRK [left] subpanel) and
GFP-C67-262RGGE (GGE [right] subpanel). GFP fluorescence was
analyzed using a confocal microscope at day 1 posttransfection, without
prior fixation.
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The DHBV core NLS is essential for viral replication.
To
examine the importance of the DHBc NLS defined above for the viral life
cycle, we introduced the NLS knockout mutation (RRK to GGE) in the
context of the complete replication-competent DHBV genome as present in
plasmid pCD16 (care had been taken during construction of the GGE
mutations in the DHBc ORF that these did not cause any amino acid
changes in the overlapping polymerase frame). The resulting plasmid,
pCD16-GGE, was transfected into LMH cells (this is a chicken hepatoma
cell line known to produce high virus yields after pCD16 transfection
[3]). Culture supernatants and cell lysates were
investigated for the ability of the mutant DHBV genome (i) to form core
particles, (ii) to encapsidate the pregenomic RNA, (iii) to undergo
reverse transcription, and (iv) to produce viral particles. The results
obtained are presented in Fig. 4 and
summarized in Table 1. Firstly, Western
blot analysis of the cytosolic fractions before and after pelleting
through a 60% sucrose cushion showed that the amount of mutant capsids was about threefold reduced in comparison to the wild-type in mutant
transfected cells and furthermore that the protein was in either case
pelletable from the extract, indicative of the presence of core
particles. As judged from primer extension analysis (Fig. 4B), the
mutant capsids appeared to be additionally reduced about 10-fold in
their capacity to encapsidate the pregenomic RNA. An even more severe
defect was evident in Southern blots which failed to detect conversion
of RNA pregenomes into DNA (Fig. 4C). Finally, and not surprising in
view of the aforementioned results, analysis of cell culture
supernatants for viral particles by sedimentation into a preformed CsCl
density gradient followed by DNA dot blot analysis (31),
as well as infection experiments, revealed that the NLS mutant genome
was unable to produce detectable amounts of virus. Virus production
was, however, restored by cotransfection with pCD4, a helper plasmid
providing all viral proteins in trans, but lacking the RNA
packaging signal
and therefore by itself unable to produce virus
particles (1, 33). The transcomplemented virus particles
containing the defective D16-GGE genome were still able to infect PDHs,
the number of cells infected per DNA-containing virus particle being
comparable to that observed with the wild type. However, there was no
production of infectious progeny virus from mutant-infected cells as
visualized by the absence of spread from the initially infected single
cells to neighboring hepatocytes, even after culturing the cells for up
to 10 days postinfection (data not shown). Furthermore, and again in
contrast to wild-type-virus-infected cells, accumulation of cytoplasmic
DHBc to levels detectable by immunofluorescence was delayed to day 5 or
6 postinfection while wild-type-virus-infected cells required only 3 to
4 days to reach a comparable signal strength. This result is in keeping
with the data described above, indicating a block in the production of cytoplasmic progeny DNA genomes caused by the GGE mutation, as well as
with the lack of nuclear capsid targeting described below.

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FIG. 4.
Effects on DHBV genome replication by the GGE NLS
knockout mutation. Cytosolic fractions from about 107 LMH
cells, transfected with plasmid pCD16 (wt), pCD4 ( -), or pCD16-GGE
(GGE), respectively, were divided into several aliquots. Capsids were
pelleted by ultracentrifugation and analyzed separately for the
presence of DHBV nucleocapsids and DHBV replication intermediates, as
detailed in Materials and Methods. (A) Western blot detecting DHBc in
aliquots (corresponding to 1.5% of the total cells) from the pellet
(pel), the supernatant (sup), and before centrifugation (tot). (B)
Primer extension analysis detecting 5' termini of genomic RNA as the
major (310-nucleotide-long) cDNA extension product (marked by the
arrowhead) that was also produced abundantly from a positive control,
RNA from DHBV-infected duck liver (liver) (see reference
30). The aliquots analyzed corresponded to 6 or 30% of
the cells (1x and 5x, respectively). (C) Southern blot analysis
identified encapsidated DNA replication products in aliquots
corresponding to 0.9% or 7% of the cells (1x and 8x, respectively).
Relaxed circular (RC), linear (L), and single-stranded (S) DHBV DNA
were detectable only in cells transfected with pCD16; the more slowly
migrating bands originate from traces of the transfecting plasmids not
removed prior to analysis.
|
|
The DHBV core NLS is essential for nuclear pore
targeting.
To further examine the function(s) of the DHBc NLS in
the viral life cycle, the intracellular distribution of the mutant core protein from the NLS-defective genomic DHBV construct, pCD16-GGE, was
also analyzed in transfected HuH7 cells. As shown by indirect immunofluorescence, cells transfected with the mutant genome did not
show the characteristic perinuclear core protein staining (Fig.
5A), in contrast to the wild-type control
(results shown in Fig. 1A [experiments performed in parallel]).
Costaining with an anti-nuclear pore antibody and confocal microscopic
analysis confirmed that mutant core protein was no longer associated
with nuclear pores in the transfected cells (Fig. 5B). These data are consistent with the hypothesis that the NLS identified is important for
proper nuclear pore targeting of the DHBV nucleocapsid also in the
context of viral replication cycle. However, we cannot exclude the
possibility that the NLS defect may have also contributed indirectly to
the loss of nuclear targeting of the immature RNA-containing nucleocapsids (see also Discussion).

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|
FIG. 5.
DHBc NLS function is required for nuclear pore targeting
of capsids. (A) HuH7 cells transfected with pCD16-GGE carrying a
mutated capsid NLS were fixed, immunostained for DHBc using a
fluorescein-conjugated secondary antibody, and analyzed by
conventional fluorescence microscopy. (B) Analogously treated
cells, costained for core protein using a fluorescein-conjugated
secondary antibody (core [left] subpanel) and NPC using a
tetramethylrhodamine-conjugated secondary antibody (NPC [right]
subpanel) were analyzed with a confocal laser-scanning microscope. The
data shown should be compared to those obtained in parallel with the
wild-type control (pCD16) shown in Fig. 1.
|
|
DHBc contains signals for nuclear export.
In the experiments
testing for nuclear import of the GFP-DHBc fusion constructs, chimeric
proteins lacking the DHBc-NLS had shown an exclusively cytoplasmic
distribution (Fig. 2 and 5). This was particularly unexpected in the
case of construct GFP-C125-183 which, according to its size of about
36 kDa, was expected to freely diffuse between the cytoplasm and
nucleoplasm. An explanation for the exclusive cytoplasmic staining of
such a small protein could be the presence of a nuclear export signal.
To test for the presence of such a signal in the DHBc protein, we
performed heterokaryon shuttle experiments, investigating protein
translocation between heterologous nuclei in fused cells (5,
32). To preclude background by free nucleocytoplasmic diffusion,
the largest DHBc sequence containing a functional NLS (C67-262) was
chosen and fused to a tandemly repeated GFP dimer (2xGFP). When
expressed in transfected HeLa cells, this protein (2xGFP-C67-262)
localized exclusively to the nucleoplasm, whereas the control with
unfused 2xGFP was, despite of its size of 60 kDa, exclusively
cytoplasmic (not shown), both results supporting the validity of the
assay system. In the subsequent shuttle experiments (results shown in Fig. 6), p2xGFP/C67-262-transfected HeLa
cells were fused to NIH 3T3 mouse fibroblasts, and the GFP fusion
protein was assayed for its potential to shuttle from HeLa cell nuclei
to the mouse cell nuclei (and back). To this end, the cells were fixed
and the nuclei stained with bis-benzimide, which marks the
mouse nuclei with a distinct punctuate pattern (Fig. 6), thus allowing
the nuclei from both cell types to be distinguished. At the time point of examination (1.5 h after cell fusion), the fluorescent fusion protein was found to be enriched equally well in mouse nuclei as in the
adjacently located HeLa cell nuclei donating the fluorescent protein
(Fig. 6), indicative of rapid nuclear export of the DHBc fusion
protein.

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|
FIG. 6.
The DHBc sequence contains a signal(s) functioning in
nuclear export. Fluorescence micrographs of a heterokaryon examining a
protein consisting of 2xGFP fused to DHBc amino acids 67 to 262. p2xGFP/C67-262-transfected HeLa cells were fused with mouse fibroblasts
in the presence of cycloheximid. Cells were fixed 1.5 h
postfusion, and cell nuclei were stained with bis-benzimide
and examined with a fluorescence microscope. Mouse nuclei, identified
by a typical bis-benzimide staining pattern, are marked with
white arrows, and the human nuclei are marked with orange arrows.
|
|
 |
DISCUSSION |
The occurrence of regulated nuclear targeting of hepadnavirus
nucleocapsids was initially predicted from the demonstration of nuclear
import of progeny DNA genomes in DHBV-infected cultured duck
hepatocytes (41). The present study now provides the first direct experimental evidence that the DHBc contains signals for bidirectional cyto-nucleoplasmic transport, thereby complementing and
extending data obtained with HBV in transfected cells. A single, unipartite NLS was mapped within amino acids 184 to 226 of the DHBc
sequence, most probably encompassing a stretch of basic amino acids
(PRRRKVK) with similarity to the classical basic amino acid-type NLS of the simian virus 40 large T antigen (PKKKRKV [see
references 18 and 19]). Furthermore,
transfer of the NLS-containing sequence (in the context of amino acids
184 to 262) onto other GFP-fused polypeptides, which were by themselves
incapable of nuclear import, demonstrated that the sequence was not
only essential but also sufficient for NLS function (A. Knaust and
H. Schaller, unpublished data). Interestingly, no comparable results
were obtained in this assay with HBc segments encompassing the HBc NLS
as characterized in other detection systems.
In the context of the complete DHBV genome, an NLS knockout mutation
resulted in a complete loss of virus production from transfected cells
or in infected hepatocytes, a result underlining the importance of the
signal for the virus replication cycle. However, this mutation (RRK to
GGE) also resulted in reduced RNA packaging and in a complete loss of
reverse transcription of the viral RNA genome into DNA and,
consequently, in a general block in capsid maturation. We therefore
cannot exclude the possibility that these defects may have also
contributed indirectly to the loss of nuclear nucleocapsids targeting.
On the other hand, association of core protein with the nuclear
membrane was also observed with a construct expressing the wild-type
core protein (and empty core particles) in the absence of any other
viral gene product. Hence, lack of core staining at the nuclear pore
after transfection of the mutated genome has to be attributed to the
lack of a functional NLS on the capsid.
Several studies have mapped and further investigated an NLS activity
overlapping with four arginine clusters localized close to the carboxy
terminus of the human HBV core protein (7, 20, 44), in a
domain that lies outside of the domain required for assembly into the
well-characterized HBV capsid structure (4, 28) but whose
basic amino acid sequences play an essential role in genomic RNA
encapsidation and reverse transcription in both HBV and DHBV (28,
38). Mutational analysis of this region in the HBc suggests that
there is more than one NLS contained in this region in HBV and,
furthermore, that several overlapping serine-proline motifs are subject
to phosphorylation, resulting in a modulation of the several functions
of the arginine repeats, including genomic RNA packaging, reverse
transcription, and probably also NLS functionality (11, 22,
23). Extrapolating from these observations, and assuming that a
glutamate residue mimics constitutive phosphorylation, we notice that
the sequences from HBV and DHBV share a similar motif: SPRRRR in the
HBc sequence and EPRRRK in the DHBc sequence. Thus, it is conceivable
that both core proteins carry a basically similar arginine-rich NLS, and it seems likely that both viruses use a common cellular receptor for capsid import, most probably importin
/
, which has recently been shown to be essential for nuclear pore binding of HBV capsids (20). It should be emphasized, however, that the two
signals are located at different positions in the respective
polypeptide chains and that the phosphorylatable serine and threonine
residues in the DHBc (positions 239, 245, 257, and 259 [see reference
46]) are located separate from the NLS. Thus, the two
NLSs may respond quite differently to capsid phosphorylation, similar
to the different influences observed on genomic RNA packaging and
reverse transcription (11, 22).
Finally, we present experimental evidence suggesting that the core
protein sequence might carry not only an NLS but also an NES function.
Collectively, these data suggest an NES to be contained within the
(leucine-rich) sequence between DHBc amino acids 125 and 183, which is
sequentially separated from the NLS and which on its own appears to
exclude GFP fusions from nuclear import (Fig. 2Be). They do not,
however, rule out an alternative, more-complex nuclear shuttle signal
unifying the NLS and NES functions in a single signal sequence
interacting with both import and export factors which themselves
shuttle (for a review, see reference 27).
Whatever type of signal may mediate nuclear export, the respective
function may serve distinct roles in the hepadnaviral live cycle.
Firstly, it may help to solve the obvious, but largely unnoticed,
problem that the capsid subunit as synthesized in the cytoplasm is
expected to be a substrate for the nuclear import machinery. As an
alternative (although the two are not mutually exclusive) to NLS
masking by protein folding and/or phosphorylation, we now propose that
the NLS may be counterbalanced by an NES function, thereby preventing
nuclear assembly of hepadnaviral capsids. Balancing nuclear
localization through counteracting NLSs and NESs, as postulated here
for hepadnaviruses, may well provide a more general mechanism used by
viruses for avoiding nuclear accumulation of progeny capsids, while
maintaining the essential nuclear targeting of the incoming nucleocapsid. In keeping with this hypothesis, a functional NES was
recently found in the human immunodeficiency virus type 1 (HIV-1)
matrix protein (6), an NLS-containing protein that is
normally targeted to the plasma membrane as part of the HIV gag
precursor. Secondly, we and others (W. Yang and J. Summers, personal
communication) have observed a local accumulation of DHBc in distinct
nuclear bodies. We furthermore found that these loci also accumulated
pregenomic DHBV RNA (H. Mabit and H. Schaller, unpublished data). Thus,
it is tempting to speculate that a shuttling capsid protein may also
aid export of viral RNA genomes from the nucleus via core protein-RNA
interaction. Such mechanisms have been described for other viruses that
export an unspliced genomic RNA, a prominent example being the HIV Rev
export system (5) and the viral ribonucleoprotein export
complex of influenzavirus A using the NS2 and/or the M1 protein
(26, 30, 42).
 |
ACKNOWLEDGMENTS |
We thank Bärbel Glass for preparation of PDHs, Christa Kuhn
for antibodies, Marc Windisch for construction of plasmids, Matthias Dobbelstein for advice regarding the shuttle assay, Elizabeth Grgacic
for comments on the manuscript, and Karin Coutinho for expert editorial assistance.
This work was supported by a ZMBH fellowship to H.M. and by the Fond
der Chemischen Industrie.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: ZMBH, University
of Heidelberg, Im Neuenheimer Feld 282, 69120 Heidelberg, Germany. Phone: 49 6221 546885. Fax: 49 6221 545893. E-mail:
hshd{at}zmbh.uni-heidelberg.de.
Present address: Institute of Zoology, 8057 Zürich, Switzerland.
Present address: Department of Biochemistry, Swiss Institute of
Technology, 8092 Zürich, Switzerland.
 |
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Journal of Virology, February 2001, p. 1968-1977, Vol. 75, No. 4
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.4.1968-1977.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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