Previous Article | Next Article 
Journal of Virology, February 2001, p. 1620-1631, Vol. 75, No. 4
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.4.1620-1631.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Porcine Teschoviruses Comprise at Least Eleven
Distinct Serotypes: Molecular and Evolutionary Aspects
Roland
Zell,1,*
Malte
Dauber,2
Andi
Krumbholz,1
Andreas
Henke,1
Eckhard
Birch-Hirschfeld,1
Axel
Stelzner,1
Dieter
Prager,3 and
Rudiger
Wurm3
Institut für Virologie, Klinikum der
Friedrich-Schiller-Universität, 07745 Jena,1 Bundesforschungsanstalt für
Viruskrankheiten der Tiere, Friedrich-Loeffler-Institut, Institut
für Virusdiagnostik, 17498 Insel
Riems,2 and Staatliches
Veterinäruntersuchungsamt, 59821 Arnsberg,3 Germany
Received 10 August 2000/Accepted 14 November 2000
 |
ABSTRACT |
Nucleotide sequencing and phylogenetic analysis of 10 recognized
prototype strains of the porcine enterovirus (PEV) cytopathic effect
(CPE) group I reveals a close relationship of the viral genomes to the
previously sequenced strain F65, supporting the concept of a
reclassification of this virus group into a new picornavirus genus.
Also, nucleotide sequences of the polyprotein-encoding genome region or
the P1 region of 28 historic strains and recent field isolates were
determined. The data suggest that several closely related but
antigenically and molecular distinct serotypes constitute one species
within the proposed genus Teschovirus. Based on sequence
data and serological data, we propose a new serotype with strain
Dresden as prototype. This hitherto unrecognized serotype is closely
related to porcine teschovirus 1 (PTV-1, former PEV-1), but induces
type-specific neutralizing antibodies. Sequencing of field isolates
collected from animals presenting with neurological disorders prove
that other serotypes than PTV-1 may also cause polioencephalomyelitis
of swine.
 |
INTRODUCTION |
The porcine enteroviruses (PEVs)
were described as causative agents of severe and mild neurological
disorders known as Teschen/Talfan disease (16, 39),
reproductive failure (10), pneumonia (27), diarrhea (13), and dermal lesions of swine
(25). Due to the physicochemical properties of their
virions, they were previously classified as enteroviruses. Several
distinct serotypes have been described (3, 5, 6, 12, 17, 23,
36). Based on parameters such as (i) cytopathic effect (CPE),
(ii) replication properties in various host cell lines, and (iii)
serological assays, the PEVs were divided into three CPE groups: I
(serotypes 1 to 7 and 11 to 13), II (serotype 8), and III
(serotypes 9 and 10) (23, 42). Recently, partial genome
regions of members of each CPE group
Porcine teschovirus 1 (PTV-1)
strains Talfan and F65 (9, 20), PEV-8 (J. H. Peng,
R. P. Kitching, and N. J. Knowles, unpublished data), and
PEV-9 (J. H. Peng, J. W. McCauley, R. P. Kitching, and
N. J. Knowles, unpublished data)
were cloned and sequenced.
Analysis of available genome information revealed that PEV-9 and PEV-10
are typical enteroviruses, while PEV-8 appears to be closely related to
both enteroviruses and rhinoviruses. However, the genome of strain F65
(a member of CPE group I) exhibits unique features suggesting the
reclassification into a new picornavirus taxon. The new genus was named
Teschovirus, with F65 as a member of the species
Porcine teschovirus (22). In this study, we
will use the proposed name "teschovirus" as synonymous to "PEV
CPE group I."
Since the molecular properties of other members of PEV CPE group I and
their relationship to F65 are still unclear, we aimed to gain further
information on these viruses. For this purpose, the genomes of the
prototype strains of PEV-1 to -7 and PEV-11 to -13 (proposed names
PTV-1 to -10 [Table 1]) were sequenced and compared to genomes of other members of the family
Picornaviridae. Moreover, several historic strains and
recent field isolates were included to examine evolutionary aspects of
the PTVs and facilitate an unequivocal classification of these
strains. At present, serotyping using hyperimmune sera is difficult due
to the significant cross-reactivity of PTV-specific antibodies. This
property of the PTVs led to the description of untypeable strains
(e.g., references 8 and 36). Another recent
approach addressed this question by the generation of monoclonal
antibodies (MAbs) (8).
 |
MATERIALS AND METHODS |
Sources of prototype viruses and clinical specimens.
All PTV
prototype strains used in this study are listed in Table 1. Isolates
from brain and spinal cord were collected from animals showing symptoms
of neurological disorders (Teschen/Talfan disease). Isolates from
fetuses and organ pools (lymph nodes, spleen, liver, and lungs) were
collected from animals showing clinical symptoms such as reproductive
failure and pneumonia. Isolates from feces and rectal swabs were
collected from healthy animals. PTV-1 IBRSV-VII is the only strain of
this collection of unknown origin, as it was isolated from an
apparently contaminated cell culture.
Cell culture and propagation of viruses.
PEV and PTV strains
were propagated in porcine kidney (PS-EK and PK-15) or porcine
embryonic testes (EFH-R, CCLV, and RIE170) cells. PS-EK and PK-15 cells
were maintained in Dulbecco modified Eagle medium and EFH-R cells were
maintained in a mixture of Hanks and Eagle minimal essential media with
nonessential amino acids and sodium pyruvate. The media were
supplemented with 10% fetal bovine serum. There were no fundamental
differences in susceptibility of these cells to various viruses. Time
of harvest for the propagated virus strains was dependent on the extent
of CPE. Incubation was ended when 90% of the monolayers were
destroyed, a time point which varied from 18 h to 4 days postinfection.
The number of virus passages was kept as low as possible.
Indirect immunofluorescence (IIF) assay.
Monolayers of EFH-R
cells grown on multispot slides were infected with virus at a
multiplicity of infection of 0.5 to 2.0 and incubated until slight CPE
was observed, generally 16 to 20 h postinfection. The cells were
washed in isotonic buffer and air dried before immersion in acetone.
Anti-PEV/PTV MAbs were applied and incubated for 1 h. A Cy3
(indocarbocyanin)-conjugated goat anti-mouse immunoglobulin G secondary
antibody (Dianova) was used to detect specifically bound MAbs.
Fluorescence intensity was rated from not detectable (
) to strong
(+++) by microscopic examination.
Neutralization assays.
For neutralization assays,
neutralizing hyperimmune sera specific to different virus strains were
generated in rabbits. To propagate these sera, virus was partially
purified by separation of cell debris and concentrated by
ultracentrifugation. Virus was administered to rabbits intramuscularly
starting with 1 ml of infectious virus (
108.8 50% tissue
culture infective doses [TCID50]) suspended in complete Freund's adjuvant. Animals were boosted three to four times, with slightly increasing doses of virus every 4 weeks. Furthermore, a PTV-1
(Swiss strain Märvil)-specific antiserum produced in specific
pathogen-free pigs was used. Virus neutralization assays were performed
by two methods. (i) Virus was adjusted to 100 to 1,000 TCID50/50 µl and neutralized with antisera of a known
type specificity diluted in twofold steps. The maximum serum dilution which neutralized the virus completely was determined. The reaction value of a serum neutralizing its reference virus strain was set at
100% (SNT). (ii) Virus was diluted in 10-fold steps. Equal volumes of
a constant dilution of an immune serum were added and allowed to react
with the virus for 1 h at 37°C. Subsequently, the mixtures were
transferred to EFH-R cells grown in 96-well plates. For controls,
immune sera were replaced by normal rabbit sera. After 3 to 5 days,
cells were surveyed for CPE and infectivity titers were calculated. The
degree of neutralization was expressed as the neutralization index (NI)
indicating the difference in neutralization of the virus by an immune
serum in relation to a normal serum. The NI was calculated as negative
decadal logarithm (VNT). Neutralization of virus was considered
significant if NI was
1.7 (29).
Sample preparation, reverse transcription-PCR (RT-PCR), and
sequencing of amplicons.
RNA of PTV-infected PS-EK cells was
prepared by the method of Chomczynski and Sacchi (7). Five
micrograms of total RNA was reverse transcribed with 20 pmol of
oligo(dT)20 primer and 40 U of Superscript (RNase H-free)
reverse transcriptase (Gibco) in a total volume of 40 µl. Two
microliters of the cDNA was used for high-fidelity Expand long PCR
(Roche Diagnostics) employing different specific primer sets (not
shown). Prior to sequencing, PCR products were purified with either a
Qiaquick gel extraction kit or Qiaquick PCR purification kit (Qiagen).
Sequencing was done according to the cycle sequencing protocol of ABI
Perkin-Elmer. Sequencing products were run on an ABI Prism 310 genetic analyzer.
Nucleotide and amino acid sequences, sequence alignments, and
phylogenetic trees.
The nucleotide and amino acid sequences (with
EMBL or Genbank sequence library accession numbers given in
parentheses) of the following virus strains were used for sequence
comparisons: poliovirus type 1 (PV-1) Mahoney (J02281), coxsackievirus
A type 16 (CVA-16) G-10 (U05876), CVA-21 Coe (D00538), CVB-3 Nancy
(M33854), human enterovirus 70 (EV-70) J670/71 (D00820), bovine
enterovirus type 1 (BEV-1) VG(5)27 (D00214), PEV-8 V13 (AJ001391),
PEV-9 UKG 410/73 (Y14459), PEV-10 LP 54 (complete genomic sequence [R.
Zell and A. Krumbholz, unpublished data]), A-2 plaque virus
(AF201894), human rhinovirus 1B (HRV-1B) B632 (D00239), HRV-14 1059 (L05355, K02121, and X01087), foot-and-mouth disease virus (FMDV) A22
(X74812), Aichi virus (AB010145), avian encephalomyelitis virus (AEV)
(AJ225173), equine rhinitis A virus (ERAV; former equine rhinovirus 1 [ERV-1]) (L43052), equine rhinitis B virus (ERBV; former ERV-2)
(X96871), hepatitis A virus (HAV) LA (K02990), encephalomyocarditis
virus (EMCV) B (M22457, J04335), parechovirus 1 (former echovirus 22)
Harris (L02971), PTV-1 (formerly PEV-1) F65 (AJ011380), and Theiler
murine encephalomyelitis virus (TMEV) DA (M20301).
Sequences were aligned manually or with the ClustalW program
(
38) and compared to the corresponding genome regions of
other
picornaviruses. Neighbor-joining trees were calculated with the
quartet puzzling method (
34,
35) using the JTT
substitution
model for amino acid sequences (
19) and the
Tamura-Nei model
for nucleotide sequences (
37). The
reliability of the clustering
was tested by 10,000 iterations in the
quartet puzzling method.
For tree construction, maximum-likelihood
branch lengths were
computed. Consistency of branching was also tested
with the maximum-parsimony
algorithm (data not shown) using the PHYLIP
program package (
14).
RNA secondary predictions and free energy calculations were performed
with the
mfold program, version 3.0 (
43).
Nucleotide sequence accession numbers.
The nucleotide
sequence data reported in this paper are available from the GenBank
nucleotide sequence database under accession no. AF231767 to AF231769
and AF296087 to AF296121.
 |
RESULTS |
Sequencing of PTV prototype strains.
Of the 13 previously
described serotypes of PEV, 10 were subclassified into CPE group I
(3, 23). Molecular data describing their relation to PTV-1
strain F65 are missing. Using long RT-PCR, amplicons of more than 7 kbp
of these viruses were generated and directly sequenced. With this
approach, the complete polyprotein-encoding nucleotide sequences of the
PTV prototype strains were determined and compared to the genomes of
other picornaviruses. The organization of the teschovirus genome is
shown in Fig. 1. The teschovirus RNA has
a length of at least 7,100 nucleotides (nt) containing one long open
reading frame. The deduced polyproteins range from 2,203 to 2,207 amino
acids (aa). For PTV-1 strain F65, two AUG initiator codons, at nt 336 and 432, were suggested (9). However, the first start
codon is not conserved among the PTVs (Fig.
2). More likely, viral translation starts
at nt 432 (the second in-frame AUG initiator codon of F65). There is a
Kozak consensus sequence around this start codon
(UCACCAUGG) which is supposed to bind to the 18S
rRNA (26). Up to nine base pairs may be formed at this
site. Twenty-two nucleotides upstream of the A432UG
initiator codon is a short oligopyrimidine tract (CUUU)
which together with neighboring nucleotides may interact with the
3' end of the 18S rRNA. Here, up to 10 nucleotides may be involved in
base pairing (Fig. 2). Such an oligopyrimidine tract was reported to be
important for proper translation initiation. Prerequisite is a distance of approximately 22 bp (for a review, see reference 33).
For the other start codon, an oligopyrimidine tract is located 15 nt
upstream of the A336UG triplet (9) at a
distance comparable to those found in hepatoviruses (33).
The nucleotide sequence 3' to this A336UG triplet is
extremely well conserved. In contrast, synonymous third-base
substitutions are observed 3' to nt 432 (Fig. 2). Assuming a
translation start at nt 432, the PTV polyprotein contains a highly
conserved leader protein of 86 aa. This leader protein seems to be
released from the polyprotein by the 3C proteinase, as concluded from
the presence of a conserved consensus QG cleavage site. Like the leader
protein, the nonstructural proteins of the P2 and P3 regions show
considerable sequence conservation. This high degree of sequence
homology does not allow the differentiation of distinct serotypes. The
teschovirus 2A proteinase is FMDV-like; i.e., the putative 2A
proteinase is an oligopeptide with a C-terminal NPG
P consensus
cleavage site. The processing site at the N terminus is unclear, since
both an asparagine residue (at aa 953 of the consensus sequence) which
is characteristic for the cleavage of FMDV 2A and a nearby QG cleavage
site (at aa 947/948) is conserved. Thirteen of 16 amino acids are
identical to the FMDV 2A sequence. Pairwise comparison of the
nonstructural proteins reveal high (>90%) amino acid identity.
Previously, application of quantitative taxonomy to all members of the
potyviruses and enteroviruses provided strong evidence for species
distinction (31, 40). To determine whether the PTV
serotypes belong to one or more species, we analyzed pairwise
similarities between the P2 and P3 nonstructural proteins of 26 teschoviruses and, as a control, 25 sequences of enterovirus 3D
polymerases belonging to six different species (Fig.
3). While the frequency distribution of
pairwise amino acid identity scores of each teschovirus P2-P3 protein
accumulates in a single peak, there is a discontinuous distribution of
pairwise similarities for the enterovirus 3D polymerases which is
characteristic for a multispecies genus. From this result, we concluded
that all known PTV serotypes belong to one species. Construction of
neighbor-joining trees of selected P2 and P3 proteins supports the
results of pairwise comparisons and demonstrates the unique position of
the porcine teschoviruses within the picornavirus family (Fig.
4). In all examples examined,
cardioviruses, aphthoviruses, and ERBV (formerly ERV-2) are their
closest relatives.

View larger version (35K):
[in this window]
[in a new window]
|
FIG. 1.
Genome organization of teschovirus and other
picornavirus genera. The open reading frames are flanked on either
sides by NTRs. Names of gene regions (not drawn to scale) encoding
viral proteins are presented. In terms of 2A function, four virus
groups (A to D) can be distinguished. Gene regions coding for
proteinases (2Apro, 3Cpro, Lpro)
and the nonproteolytic leader proteins (L) are highlighted in black and
grey, respectively. The cardiovirus 2A protein has an N-terminal
extension (indicated in grey) of unknown function. Among the
aphthoviruses, FMDV has three copies of the 3B gene (as indicated),
while ERAV (formerly ERV-1) does not. The genome-linked 3B peptides at
the 5' end and the poly(A) tails at the 3' ends are indicated. The
processing sites of 3Cpro (arrowheads) and
2Apro and Lpro (small arrows) are also shown. A
question mark symbolizes unknown proteolytic activity responsible for
the maturation cleavage of the 1AB precursor.
|
|

View larger version (46K):
[in this window]
[in a new window]
|
FIG. 2.
Alignment of partial nucleotide sequences around the
start codon of PTV-1 strain F 65 and the PTV prototype strains. The
consensus initiator codon at nt 432 is underlined. The AUG triplet at
nt 336 of F 65 (also underlined) is not conserved among the teschovirus
strains. Deviating nucleotides are highlighted. Nucleotide numbering
refers to the sequence of strain F 65 (GenBank accession no. AJ
011380). The 3' ends of 18S rRNA sequences are aligned to viral
sequences which are thought to direct the ribosome to the initiation
codon. Nucleotides of the 18S rRNA which allow the formation of base
pairs with viral RNA are underlined.
|
|

View larger version (34K):
[in this window]
[in a new window]
|
FIG. 3.
Frequency distribution of pairwise amino acid identity
scores of P2 and P3 proteins. Twenty-six sequences of teschovirus
nonstructural proteins (2B to 3D) were investigated and compared to 25 enterovirus 3D polymerase sequences. The amino acid identity scores of
60 to 75% of the enterovirus genus are characteristic for comparisons
of heterologous species, while amino acid identity scores greater 90%
of enteroviruses and PTVs indicate comparisons of (i) different strains
of homologous serotypes or (ii) heterologous serotypes of homologous
species.
|
|

View larger version (19K):
[in this window]
[in a new window]
|
FIG. 4.
Unrooted neighbor-joining tree of the 3D polymerases of
21 picornavirus species. Representative serotypes of the enterovirus
and rhinovirus genera: CVA-16 (HEV-A), CVB-3 (HEV-B), PV-1/CVA-21
(PV/HEV-C), EV-70 (HEV-D), A-2 plaque virus, PEV-10 (PEV-B), PEV-8
(PEV-A), HRV-1b (HRV-A), and HRV-14 (HRV-B). Amino acid sequences were
aligned with the ClustalW program. Maximum-likelihood branch lengths
were calculated using the quartet puzzling method. Branch lengths are
proportional to genetic divergence. The scale bar indicates amino acid
substitutions per site. Circles indicate acknowledged picornavirus
genera. Numbers at nodes represent percentages of bipartitions in
intermediate trees that have been generated in 10,000 puzzling steps.
Note that the three CPE groups of PEVs belong to three distinct taxa
(CPE 1 = PTV, CPE II = PEV-A, CPE III = PEV-B). PEV-A is
a tentative species of the enterovirus genus.
|
|
In contrast to the nonstructural proteins, the capsid proteins 1A to 1D
are the most divergent proteins of the PTV serotypes
(1AB, 352 to 354 aa; IC, 242 aa, 1D, 262 to 264 aa). Extents of
pairwise amino acid
identity range from 79 to 87% for 1AB, 76
to 91% for 1C, and 66 to 82% for 1D. Phylogenetic tree construction
using the Puzzle
program supports the existence of distinct serotypes,
which were
demonstrated with serological methods (
3,
23)
(Tables
2 and
3).
For this analysis, representative members
of the most closely related
genera cardiovirus, aphthovirus, and
erbovirus (ERBV) were included to
illustrate both the genetic
distance of the PTV serotypes to the
heterologous genera and the
close relationship within the teschoviruses
(Fig.
5). The proposed
PTV species can be
divided into three subgroups consisting of
three to four serotypes
each.

View larger version (36K):
[in this window]
[in a new window]
|
FIG. 5.
Neighbor-joining tree based on the P1 region of 17 picornaviruses. Deduced amino acid sequences of the capsid proteins of
11 PTV serotypes and their closest picornavirus relatives (Fig. 4) were
aligned with the ClustalW program. Maximum-likelihood branch lengths
were calculated using the quartet puzzling method. Branch lengths are
proportional to genetic divergence. The scale bar indicates amino acid
substitutions per site. Numbers at nodes represent the percentage of
bipartitions in intermediate trees that have been generated in 10,000 puzzling steps. Grey rectangles indicate subgroups within the
teschovirus genus.
|
|
So far, the 5' end of the PTV genome has not been determined. However,
the presence of an oligo(C) stretch was demonstrated
for F65
(
9). The 5' and 3' nontranslated regions (NTRs) are
the
most conserved genome regions of the PTVs. For example, a
stretch of
250 nt at the 3' part of the supposed internal ribosome
entry site
(IRES) has a nucleotide identity score of 99% (see
also Fig.
2).
To determine the nucleotide sequence of the 5' NTR
up to this C
tract, PCR with a negative-strand-specific oligo(dC)
20 primer and a positive-strand-specific primer was performed. However,
this approach was successful in only 3 of 25 assayed strains (Talfan,
Bozen, and Vir 1626/89 [data not shown]).
Twenty-eight 3'-NTR sequences of all serotypes were determined. As a
result, the length of the 3' NTR ranges from 65 to 67
nt. The overall
sequence is highly conserved (nucleotide identity
greater 94%).
However, all sequenced strains lack the two 3' cytosine
residues of F65
which results in significant changes of the proposed
RNA secondary
structure (
9). Also, some strains have an insertion
of an
uridine residue at nt 56 of the 3' NTR as well as exchanges
at nt 5/6
and 47/48 (data not shown). Due to these differences,
both of the
stem-loops proposed by Doherty and coworkers appear
to be less
conserved among the PTVs. Using the
mfold 3.0 program,
conserved RNA secondary structures consisting of three stem-loops
are
suggested (Fig.
6). The free energy of
this proposal ranges
from

10.0 (F65) to

13.4 (Vir 2899/84)
kcal/mol. While the above-mentioned
nucleotide substitutions and the
insertion increase the amount
of free energy in the proposed
three-stem-loop model, they lead
to a decrease of the previous
proposals' free energies.

View larger version (12K):
[in this window]
[in a new window]
|
FIG. 6.
Proposals of conserved RNA secondary structures of the
PTV 3' NTR. The predictions shown apply to strains Talfan, T80, PS 36, F 26, F 43, UKG 173/80, and 25-TVII. The putative secondary
structures of the other PTVs (not shown) are equivalent but have
nucleotide substitutions at positions 5/6 (resulting in two additional
Watson-Crick base pairs) and 47/48 (leading to an A/C mismatch), an
insertion at position 56 (which increases the negative free energy of
the loop), and two additional cytosine residues prior to the poly(A)
tail (only F65). Proposed structure A has a free energy of 12.7
kcal/mol. The free energies of the other PTVs range from 10.0 (F 65 [not shown]) to 13.4 (Vir 2899/84 [not shown]) kcal/mol. The
predictions of structures B and C are based on proposals suggested for
strain F 65 (not shown). For F 65, free energies of 10.1 kcal/mol for
proposed structure B and 6.6 kcal/mol for proposed structure C were
calculated. All tested PTV strains yielded significant lower amounts of
free energy than F 65, ranging from 7.7 to 3.2 kcal/mol for
structure B and 4.2 to +2.6 kcal/mol for structure C (data not
shown). The predictions of the secondary structures and the free
energies were calculated with the mfold 3.0 program
(43).
|
|
Sequencing of PTV field isolates.
Due to a significant
cross-reaction of polyclonal antisera used for IIF assays, serotyping
of PTVs often leads to ambiguous results. To facilitate unequivocal
serotyping and identify circulating genotypes, the genomes of several
historical strains and recent field isolates (Table 1) were sequenced
by the same approach as used for the prototype strains. At least the
nucleotide sequence of the P1 region which encodes the capsid proteins,
the flanking 5' NTR, and part of the P2 region was determined. As a
result, field isolates can be easily typed on the basis of capsid
protein sequences (Fig.
7). Due to the
nucleotide substitutions, pairwise amino acid identities of homologous
serotypes range from 90 to 99% (for capsid protein 1AB), while those
for heterologous serotypes are below 90%. Some genotypes of PTV-4, -5, and -6 (PS 36, PS 37, and Vir 1806/89) exhibit up to 15% divergence
from the consensus sequence (Fig. 7A). For PTV-1, three main genotypes
are observed in both nucleotide and amino acid sequence phylogenies.
All three genotypes were found to be identical with both approaches.
Tree topology was also essentially identical using a maximum parsimony algorithm (data not shown). The genotypes contain neurotropic and
nonneurotropic viruses, virulent and avirulent strains, as well as
recent and historic isolates. As shown in Fig. 7, three fields isolates
(Dresden, UKG 53/81, and DS 1696/91) are clearly distinct from PTV-1
and the other PTV serotypes, indicating the existence of a hitherto
unrecognized serotype.

View larger version (22K):
[in this window]
[in a new window]
|
FIG. 7.
Unrooted neighbor-joining trees of the P1 region of 39 porcine teschoviruses. Nucleotide sequences (A) and deduced amino acid
sequences (B) of the capsid protein-encoding genome regions were
aligned with the ClustalW program. Maximum-likelihood branch lengths
were calculated using the quartet puzzling method. Branch lengths are
proportional to genetic divergence. The scale bar indicates nucleotide
substitutions and amino acid substitutions per site; circles indicate
serotypes within the teschovirus genus.
|
|
Phenotypical characterization of the Dresden serotype.
Reaction patterns of cross-neutralization in SNT revealed a remarkable
difference between the Dresden isolate and all other PTV serotypes,
although a relation to some PTV-1 strains seems to exist (Table 2). A
second approach using the more sensitive VNT confirms this result (Fig.
8). There is no significant
neutralization of the Dresden strain by the tested PTV-1
serotype-specific hyperimmune sera raised against Märwil and the
strains Konratice, Vir 1626/89, and Teschen 199, each of which
represents one of the main PTV-1 genotypes. Only for the PTV-1 strain
Vir 1626/89 was some borderline neutralization observed (Fig. 8). On
the other hand, a Dresden-specific rabbit hyperimmune serum neutralized
Dresden virus even if strongly diluted but none of the PTV-1 strains.
Furthermore, MAbs generated against most of the PTV serotypes
were used in an IIF assay (M. Dauber, unpublished data)
(8). The Dresden isolate, UKG 53/81, and DS 1696/91
were strongly recognized by the PTV group-specific MAb 040/4B1
and the Dresden-specific MAb 041/3C3 (Table 3). Neither the
PTV-1-specific MAb 158/5D2 nor other serotype-specific MAbs showed any
reaction with these virus strains (for the PTV-1 specific MAb, see
Table 3). These results indicate that strain Dresden and the closely
related strains UKG 53/81 and DS 1696/91 may be considered as a
distinct serotype.

View larger version (29K):
[in this window]
[in a new window]
|
FIG. 8.
Neutralization assays of virus strains Dresden (PTV-11),
Konratice (PTV-1), Vir 1626/89 (PTV-1), and Teschen 199 (PTV-1) using
type-specific hyperimmune sera. The antisera were raised against
strains Dresden, Märwil, Konratice, Vir 1626/89, and Teschen 199. Only neutralization scores greater 1.7 (indicated by a line) are
considered to be specific.
|
|
 |
DISCUSSION |
Despite being initially described in the 1930s, the molecular
genetic properties of the PEVs remained unclear for a long time. Application of classical virological methods revealed the heterogeneity within this virus group: While some physicochemical properties (e.g.,
acid stability) suggested classification as enteroviruses, other
features (e.g. thermostability in the presence of 1 M
MgCl2) were incompatible with this view. These
characteristics in combination with the growth properties in different
host cell lines and the cell type specificity were the basis of a
subclassification into three CPE groups (23, 42). Ten
acknowledged serotypes comprise CPE group I, the main group (3,
23). However, significant cross-reaction of serotype-specific
antibodies led sometimes to ambiguous serotyping. Some isolates were
just untypeable (8, 36). Considerable progress was
made recently, when the polyprotein-encoding region of a member of CPE
group I was cloned and sequenced (9, 20). Because of their
distinct nucleotide sequences, they were suggested to be a new
picornavirus genus, and the name "Teschovirus" was
suggested (22). Sequencing of the polyprotein-encoding
genome region of 10 prototype strains and of more than 29 field
isolates of CPE group I reveals that PTVs are a uniform group which is clearly separated from the CPE groups II (PEV-8) and III (PEV-9 and
-10). Consequently, renaming of all members of this group seems to be
warranted. A proposal is presented in Table 1. The proposed genus
Teschovirus is characterized by a nonproteolytic leader protein and an
FMDV-like 2A proteinase (Fig. 1). A leader protein with no apparent
proteinase activity was also described for the cardioviruses and
Kobuvirus. However, a close phylogenetic relationship of the three
leader proteins was not observed (data not shown). Pairwise comparison
of the nonstructural protein sequences of each sequenced teschovirus
strain and the 3D polymerase sequences of 25 enteroviruses indicate
that all PTV serotypes belong to the same species whereas six species
comprise the enterovirus genus (Fig. 3). This is concluded from the
pairwise amino acid identity scores which distribute in a single peak.
Previously, it was shown that a discontinuous distribution of pairwise
similarities (as observed for the enterovirus 3D polymerases) is
characteristic for a multispecies genus (31, 40).
Although the 5' end of the teschovirus genome has not been determined,
a striking degree of sequence conservation of the putative PTV IRES
region is evident (Fig. 2). No other picornavirus group has a
comparable nucleotide identity up to 99%. PTV-1 strains have a poly(C)
tract followed by unique IRES sequences. The precise location of
putative secondary structures awaits detailed analysis. Two possible
translation initiation sites were suggested (9). However,
the A336UG triplet is not conserved among all PTVs, and the
highly conserved nucleotide sequences 3' to this triplet show no
third-base substitutions (Fig. 2). Moreover, the oligopyrimidine tract thought to interact with the 18S rRNA is quite close to the
A336UG (distance of 15 nt). Hepatoviruses have an
oligopyrimidine sequence 16 nt upstream of the AUG initiator codon. A
second start codon is 6 nt downstream. Previously, it was hypothesized
that an inappropriate distance might reduce translation efficiency (33) leading to the nonlytic phenotype of these slowly
reproducing viruses. The other PTV start codon, A432UG, is
absolutely conserved among 50 sequenced PTV strains (data not shown)
and part of a Kozak consensus sequence which is in the optimal distance
(23 nt downstream) from a rather short pyrimidine stretch. However, the
coding sequences contain numerous third-base changes (Fig. 2),
indicating accumulation of synonymous substitutions. In a previous
study (31), analysis of the 5'-NTR sequences of seven clinical coxsackievirus B5 isolates revealed little or no genetic linkage between 5'-NTR sequences and serotype. It was hypothesized that
this observation might be the result of a high frequency of
recombination. Likewise, no such correlation could be found for the
teschoviruses. Determination of whether this can be attributed to
recombination events must await a detailed study including more field isolates.
The 3' NTR has a conserved nucleotide sequence which allows the
formation of three putative stem-loops. Calculation of free energy
yields values ranging from
10.0 to
13.4 kcal/mol. Previously, Doherty et al. (9) suggested two alternative folds, which
appear to be unlikely since they are less conserved (data not shown). The three-stem-loop model is supported by the observation that exchanges at nt 5/6 and 47/48 of the 3' NTR as well as an insertion at
position 56 and only one C residue prior to the poly(A) tail fit the
suggested model well while leading to a decrease of the free energy of
the previous proposals.
Picornavirus serotypes are defined by the ability to induce
neutralizing type-specific antisera. According to the SNT and VNT
results presented in Table 2 and Fig. 8, strains Dresden, UKG 53/81,
and DS 1696/91 should be considered as a distinct, albeit hitherto
unrecognized serotype. This view is supported by the results of IIF
assays employing a set of PTV type-specific MAbs (Table 3) and the
sequence data (Fig. 7). Therefore, we propose the existence of an 11th
PTV serotype with strain Dresden as a prototype.
In terms of the 2A protein, picornaviruses consist of four groups (Fig.
1). (i) In cardioviruses, aphthoviruses, teschoviruses, and erbovirus
(ERBV), the 2A protein is involved in an unusual proteolytic activity
at the conserved NPGP sequence motif of its C terminus. (ii) The 2A
protein of enteroviruses and rhinoviruses is a trypsin-like proteinase
with a cysteine residue in the catalytic center; it cleaves the
polyprotein at its N terminus (for a review, see reference
32). (iii) For parechoviruses, Aichi virus, and the
hepatovirus-like AEV, conserved sequence motifs were described which
were also found in the H-rev107 family of proteins (18). (iv) The HAV 2A protein is unrelated to known proteins. Other characteristic features of the teschovirus genome organization are also
common to aphthoviruses, cardioviruses, and erbovirus, i.e., the
presence of a poly(C)/oligopyrimidine tract and a leader protein (Fig.
1). Assuming a common ancestor, all proteins of these four picornavirus
genera have diverged except for the highly conserved 2A proteinase and
the L proteinases of aphthoviruses and erbovirus, which are papain-like
cysteine proteinases. Within the teschovirus genus, one species has
evolved so far. This is concluded from the frequency distribution of
pairwise sequence comparisons of 26 PTV sequences including all
serotypes. In previous studies, this approach was found useful for the
demarcation of potyvirus and enterovirus species (31, 40).
However, the PTV speciation process seems to be still in progress since
the existence of three PTV subgroups is observed: the suggested
serotypes PTV-1, -3, -10, and -11 comprise group 1, group 2 includes
PTV-2, -4, -6, and -8, and PTV-5, -7 and -9 belong to group 3 (Fig. 5).
The genetic distance of the PTV serotypes within each subgroup is quite
similar, suggesting that the evolution of teschoviruses proceeded in
two steps. The first step led to the development of three subgroups
which then subdivided into 11 serotypes. Moreover, the suggested
serotypes PTV-4, -5, and -6 have evolved genotypes which exhibit a
remarkable diversity from the sequences of the other members of their
serotype (up to 19% of the nucleotide sequence). For PTV-1, the
Teschen strains were previously considered to include two subtypes
(28): subtype 1 contained strains Konratice and Bozen,
while strains Tirol and Talfan belong to the subtype 2. Although this
differentiation was based on physicochemical properties (electrophoresis with DEAE-cellulose), such differences are not reflected by nucleotide and amino acid sequences. Instead, Konratice, Bozen, and Tirol are genetically very similar. Three main PTV-1 genotypes can be described, each of which contains neurotropic strains
and nonneurotropic field isolates (Fig. 7).
Another aspect concerning evolutionary changes of teschoviruses
is the observation that the virulence of these viruses is gradually changing. In Europe, many thousand outbreaks of severe polioencephalomyelitis caused by PTV-1 Teschen strains occurred in the
1930s to 1950s. This epizootic was associated with considerable economic losses. Subsequently, the manifestation index of severe polioencephalomyelitis decreased and the highly virulent Teschen strains were replaced by less virulent Talfan strains (15,
16). Today, PTV-1 is still frequently isolated from the feces,
tonsils, and other nonneural organs of apparantly unaffected pigs. On
the other hand, other serotypes than PTV-1 are increasingly identified to be the cause of neurologic disorders of swine (3).
Determination of whether this observation reflects changes of virus
prevalence or is the result of improved methods of virus detection
(41) and virus isolation awaits further investigations.
 |
ACKNOWLEDGMENTS |
The excellent technical assistance of Eveline Ball, Veronika
Güntzschel, and Sabine Wachsmuth is acknowledged. We thank
Michelle Doherty and Elizabeth Hoey for communication of the PTV-1 F65 nucleotide sequence (GenBank accession no. AJ 011380) and Nick J. Knowles for communication of the PEV-8 and PEV-9 sequences (GenBank
accession no. AJ001391 and Y14459) prior to publication. We also thank
Rudolf Ahl (Bundesforschungsanstalt für Viruskrankheiten der Tiere, Tübingen, Germany), Nigel Ferris (Institute for Animal Health Pirbright Laboratory, Pirbright, England), Marlies
Klopries (Institut für Tierzucht, Tierhaltung und
Tiergesundheit, Oldenburg, Germany), and Christine Ludwig
(Thüringer Medizinal-, Lebensmittel- und
Veterinäruntersuchungsamt, Bad Langensalza, Germany) for providing strains and Martin Hofmann (Institut für
Viruskrankheiten und Immunprophylaxe, Mittelhäusern, Switzerland)
for providing serum.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Institut
für Virologie, Klinikum der Friedrich-Schiller-Universität,
Winzerlaer Str. 10, 07745 Jena, Germany. Phone: (49) 3641-657209. Fax:
(49) 3641-657202. E-mail: i6zero{at}rz.uni-jena.de.
 |
REFERENCES |
| 1.
|
Alexander, T. J., L., and A. O. Betts.
1967.
Further studies on porcine enteroviruses isolated at Cambridge. II. Serological grouping.
Res. Vet. Sci.
8:330-337[Medline].
|
| 2.
|
Appel, G.,
P. Steinhagen,
V. F. Ohlinger, and C. Ewald.
1995.
Enzephalomyopathie bei Sauen und Mastschweinen infolge einer Infektion mit porzinem Enterovirus (PEV).
Tierärztl. Umschau
50:326-336.
|
| 3.
|
Auerbach, J.,
D. Prager,
S. Neuhaus,
U. Loss, and K. H. Witte.
1994.
Grouping of porcine enteroviruses by indirect immunofluorescence and description of two new serotypes.
Zentbl. Vet. Med. B
41:277-282.
|
| 4.
|
Betts, A. O.
1960.
Studies on enteroviruses of the pig. I. The recovery in tissue culture of two related strains of a swine polio-encephalomyelitis virus from the tonsils of "normal" pigs.
Res. Vet. Sci.
1:57-65.
|
| 5.
|
Betts, A. O.,
D. F. Kelly,
P. H. Lamont, and B. E. Sheffy.
1961.
The isolation and characterization of some enteroviruses from pigs.
Vet. Rec.
73:752-755.
|
| 6.
|
Bohl, E. H.,
K. V. Singh,
B. B. Hancock, and L. Kasza.
1960.
Studies on five porcine enteroviruses.
Am. J. Vet. Res.
21:99-103[Medline].
|
| 7.
|
Chomczynski, P., and N. Sacchi.
1987.
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.
Anal. Biochem.
162:156-159[Medline].
|
| 8.
|
Dauber, M.
1999.
Identification of group I porcine enteroviruses by monoclonal antibodies in cell culture.
Vet. Microbiol.
67:1-12[CrossRef][Medline].
|
| 9.
|
Doherty, M.,
D. Todd,
N. McFerran, and E. M. Hoey.
1999.
Sequence analysis of a porcine enterovirus serotype 1 isolate: relationships with other picornaviruses.
J. Gen. Vir.
80:1929-1941[Abstract/Free Full Text].
|
| 10.
|
Dunne, H. W.,
J. L. Gobble,
J. F. Hokanson,
D. C. Kradel, and G. R. Bubash.
1965.
Porcine reproductive failure associated with a newly identified "SMEDI" group of picornavirus.
Am. J. Vet. Res.
26:1284-1297[Medline].
|
| 11.
|
Dunne, H. W.,
D. C. Kradel,
C. D Clark,
G. R. Bubash, and E. H. Ammermann.
1967.
Porcine enteroviruses: a serologic comparison of thirty-eight Pennsylvania isolates with other reported North American strains, Teschen, Talfan, and T80 serums. A progress report.
Am. J. Vet. Res.
28:557-568[Medline].
|
| 12.
|
Dunne, H. W.,
J. T. Wang, and E. H. Ammerman.
1971.
Classification of North American porcine enteroviruses: a comparison with European and Japanese strains.
Infect. Immun.
4:619-631[Abstract/Free Full Text].
|
| 13.
|
Edington, N.,
G. J. Christofinis, and A. O. Betts.
1972.
Pathogenicity of Talfan and Konratice strains of Teschen virus in gnotobiotic pigs.
J. Comp. Pathol.
82:393-399[CrossRef][Medline].
|
| 14.
|
Felsenstein, J.
1995.
PHYLIP: phylogeny inference package, version 3.57c.
University of Washington, Seattle, Wash.
|
| 15.
|
Hahnefeld, H.,
E. Hahnefeld, and W. Wittig.
1965.
Talfan disease der Schweine in Deutschland. I. Mitteilung: Isolierung und Charakterisierung von Teschenvirus Subtyp Talfan bei Saugferkeln im Bezirk Dresden.
Arch. Exp. Veterinaermed.
12:185-218.
|
| 16.
|
Harding, J. D. J.,
J. T. Done, and G. F. Kershaw.
1957.
A transmissible polio-encephalomyelitis of pigs (Talfan disease).
Vet. Rec.
69:824-832.
|
| 17.
|
Honda, E.,
A. Kimata,
I. Hattori,
T. Kumagai,
T. Tsuda, and T. Tokui.
1990.
A serological comparison of 4 Japanese isolates of porcine enteroviruses with the international reference strains.
Jpn. J. Vet. Sci.
52:49-54.
|
| 18.
|
Hughes, P., and G. Stanway.
2000.
The 2A proteins of three diverse picornaviruses are related to each other and to the H-rev107 family of proteins involved in the control of cell proliferation.
J. Gen. Virol.
81:201-207[Abstract/Free Full Text].
|
| 19.
|
Jones, D. T.,
W. R. Taylor, and J. M. Thornton.
1992.
The rapid generation of mutation data matrices from protein sequences.
CABIOS
8:275-282[Abstract/Free Full Text].
|
| 20.
|
Kaku, Y.,
S. Yamada, and Murakami.
1999.
Sequence determination and phylogenetic analysis of RNA-dependent RNA polymerase (RdRp) of the porcine enterovirus 1 (PEV-1) Talfan strain.
Arch. Virol.
144:1845-1852[CrossRef][Medline].
|
| 21.
|
Kasza, L.
1965.
Swine polioencephalomyelitis viruses isolated from the brain and intestines of pigs.
Am. J. Vet. Res.
26:131-137[Medline].
|
| 22.
|
King, A. M. Q.,
F. Brown,
P. Christian,
T. Hovi,
T. Hyypiä,
N. J. Knowles,
S. M. Lemon,
P. D. Minor,
A. C. Palmenberg,
T. Skern, and G. Stanway.
2000.
Picornaviridae, p. 657-673.
In
M. H. V. Van Regenmortel, C. M. Fauquet, D. H. L. Bishop, C. H. Calisher, E. B. Carsten, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. McGeoch, C. R. Pringle, and R. B. Wickner (ed.), Virus taxonomy. Seventh Report of the International Committee for the Taxonomy of Viruses. Academic Press, New York, N.Y.
|
| 23.
|
Knowles, N. J.,
L. S. Buckley, and H. G. Pereira.
1979.
Classification of porcine enteroviruses by antigenic analysis and cytopathic effects in tissue culture: description of 3 new serotypes.
Arch. Virol.
62:201-208[CrossRef][Medline].
|
| 24.
|
Knowles, N. J.
1983.
Isolation and identification of porcine enteroviruses in Great Britain, 1979 to 1980.
Brit. Vet. J.
139:19-22[Medline].
|
| 25.
|
Knowles, N. J.
1988.
The association of group III porcine enteroviruses with epithelial tissue.
Vet. Rec.
122:441-442[Medline].
|
| 26.
|
Kozak, M.
1987.
An analysis of 5' non-coding sequences from 699 vertebrate messenger RNAs.
Nucleic Acids Res.
15:8125-8148[Abstract/Free Full Text].
|
| 27.
|
Liebke, H., and D. Schlenstedt.
1971.
Eine Enterovirus (ECSO)-Infektion bei Schweinen mit nervösen Störungen und einer gleichzeitig vorhandenen Rhinitis.
Tierärztl. Umschau
26:287-291, 324-330.
|
| 28.
|
Mayr, A.
1961.
Degrees of variation of the virus of Teschen disease and relationship to other enteroviruses of swine.
Bull. Off. Int. Epizoot.
56:106.
|
| 29.
|
Mayr, A.,
P. A. Bachmann,
B. Bibrack, and G. Wittmann.
1977.
Virologische Arbeitsmethoden, vol. II. , p. 469-473.
Gustav Fischer Verlag, Jena, Germany.
|
| 30.
|
McConnell, S.,
R. O. Spertzel, and J. N. Shively.
1968.
Isolation, characterization, and serologic comparison of selected porcine enteroviruses by plaque reduction test.
Am. J. Vet. Res.
29:245-251.
|
| 31.
|
Oberste, M. S.,
K. Maher,
D. R. Kilpatrick, and M. A. Pallansch.
1999.
Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification.
J. Virol.
73:1941-1948[Abstract/Free Full Text].
|
| 32.
|
Ryan, M. D., and M. Flint.
1997.
Virus-encoded proteinases of the picornavirus super-group.
J. Gen. Virol.
78:699-723[Medline].
|
| 33.
|
Scheper, G. C.,
H. O. Voorma, and A. A. M. Thomas.
1994.
Basepairing with 18S ribosomal RNA in internal initiation of translation.
FEBS Lett.
352:271-275[CrossRef][Medline].
|
| 34.
|
Strimmer, K., and A. von Haeseler.
1996.
Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies.
Mol. Biol. Evol.
13:964-969.
|
| 35.
|
Strimmer, K.,
N. Goldman, and A. von Haeseler.
1997.
Bayesian probabilities and quartet puzzling.
Mol. Biol. Evol.
14:210-211.
|
| 36.
|
Szent-Ivanyi, T.
1963.
Studies on swine enteroviruses. I. Isolation and serological grouping of strains.
Acta Microbiol. Acad. Sci. Hung.
10:125-128[Medline].
|
| 37.
|
Tamura, K., and M. Nei.
1993.
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.
Mol. Biol. Evol.
10:512-526[Abstract].
|
| 38.
|
Thompson, J. D.,
D. G. Higgins, and T. J. Gibson.
1994.
CLUSTAL W: weighting, positions-specific gap penalties and weight matrix choice.
Nucleic Acids Res.
22:4673-4680[Abstract/Free Full Text].
|
| 39.
|
Trefny, L.
1930.
Hromadna onemocnemi vepru na Tesinsku.
Zverolek Obz.
23:235-236.
|
| 40.
|
Van Regenmortel, M. H. V.,
D. H. L. Bishop,
C. M. Fauquet,
M. A. Mayo,
J. Maniloff, and C. H. Calisher.
1997.
Guidelines to the demarcation of virus species.
Arch. Virol.
142:1505-1518[Medline].
|
| 41.
|
Zell, R.,
A. Krumbholz,
A. Henke,
E. Birch-Hirschfeld,
A. Stelzner,
M. Doherty,
E. Hoey,
M. Dauber,
D. Prager, and R. Wurm.
2000.
Detection of porcine enteroviruses by nRT-PCR: differentiation of CPE groups I-III with specific primer sets.
J. Virol. Methods
88:205-218[CrossRef][Medline].
|
| 42.
|
Zoletto, R.
1965.
Caratteristiche differenzialii degli enterovirus suini.
Vet. Ital.
6:3-20.
|
| 43.
|
Zuker, M.,
D. H. Mathews, and D. H. Turner.
1999.
Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide, p. 11-43.
In
J. Barciszewski, and B. F. C. Clark (ed.), RNA biochemistry and biotechnology. NATO ASI Series. Kluwer Academic Publishers, Dordrecht, The Netherlands.
|
Journal of Virology, February 2001, p. 1620-1631, Vol. 75, No. 4
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.4.1620-1631.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
-
Luke, G. A., de Felipe, P., Lukashev, A., Kallioinen, S. E., Bruno, E. A., Ryan, M. D.
(2008). Occurrence, function and evolutionary origins of '2A-like' sequences in virus genomes. J. Gen. Virol.
89: 1036-1042
[Abstract]
[Full Text]
-
Hellen, C. U. T., de Breyne, S.
(2007). A Distinct Group of Hepacivirus/Pestivirus-Like Internal Ribosomal Entry Sites in Members of Diverse Picornavirus Genera: Evidence for Modular Exchange of Functional Noncoding RNA Elements by Recombination. J. Virol.
81: 5850-5863
[Abstract]
[Full Text]
-
Simmonds, P.
(2006). Recombination and Selection in the Evolution of Picornaviruses and Other Mammalian Positive-Stranded RNA Viruses. J. Virol.
80: 11124-11140
[Abstract]
[Full Text]
-
Kim, M.-C., Kwon, Y.-K., Joh, S.-J., Lindberg, A. M., Kwon, J.-H., Kim, J.-H., Kim, S.-J.
(2006). Molecular analysis of duck hepatitis virus type 1 reveals a novel lineage close to the genus Parechovirus in the family Picornaviridae.. J. Gen. Virol.
87: 3307-3316
[Abstract]
[Full Text]
-
Zell, R., Krumbholz, A., Dauber, M., Hoey, E., Wutzler, P.
(2006). Molecular-based reclassification of the bovine enteroviruses. J. Gen. Virol.
87: 375-385
[Abstract]
[Full Text]
-
Chard, L. S., Kaku, Y., Jones, B., Nayak, A., Belsham, G. J.
(2006). Functional Analyses of RNA Structures Shared between the Internal Ribosome Entry Sites of Hepatitis C Virus and the Picornavirus Porcine Teschovirus 1 Talfan. J. Virol.
80: 1271-1279
[Abstract]
[Full Text]
-
Zell, R., Seitz, S., Henke, A., Munder, T., Wutzler, P.
(2005). Linkage map of protein-protein interactions of Porcine teschovirus. J. Gen. Virol.
86: 2763-2768
[Abstract]
[Full Text]
-
Black, W. D., Hartley, C. A., Ficorilli, N. P., Studdert, M. J.
(2005). Sequence variation divides Equine rhinitis B virus into three distinct phylogenetic groups that correlate with serotype and acid stability. J. Gen. Virol.
86: 2323-2332
[Abstract]
[Full Text]
-
Pisarev, A. V., Chard, L. S., Kaku, Y., Johns, H. L., Shatsky, I. N., Belsham, G. J.
(2004). Functional and Structural Similarities between the Internal Ribosome Entry Sites of Hepatitis C Virus and Porcine Teschovirus, a Picornavirus. J. Virol.
78: 4487-4497
[Abstract]
[Full Text]
-
Jimenez-Clavero, M. A., Fernandez, C., Ortiz, J. A., Pro, J., Carbonell, G., Tarazona, J. V., Roblas, N., Ley, V.
(2003). Teschoviruses as Indicators of Porcine Fecal Contamination of Surface Water. Appl. Environ. Microbiol.
69: 6311-6315
[Abstract]
[Full Text]
-
Johansson, E. S., Niklasson, B., Tesh, R. B., Shafren, D. R., Travassos da Rosa, A. P. A., Lindberg, A. M.
(2003). Molecular characterization of M1146, an American isolate of Ljungan virus (LV) reveals the presence of a new LV genotype. J. Gen. Virol.
84: 837-844
[Abstract]
[Full Text]
-
Kaku, Y., Chard, L. S., Inoue, T., Belsham, G. J.
(2002). Unique Characteristics of a Picornavirus Internal Ribosome Entry Site from the Porcine Teschovirus-1 Talfan. J. Virol.
76: 11721-11728
[Abstract]
[Full Text]
-
Johansson, S., Niklasson, B., Maizel, J., Gorbalenya, A. E., Lindberg, A. M.
(2002). Molecular Analysis of Three Ljungan Virus Isolates Reveals a New, Close-to-Root Lineage of the Picornaviridae with a Cluster of Two Unrelated 2A Proteins. J. Virol.
76: 8920-8930
[Abstract]
[Full Text]
-
Krumbholz, A., Dauber, M., Henke, A., Birch-Hirschfeld, E., Knowles, N. J., Stelzner, A., Zell, R.
(2002). Sequencing of Porcine Enterovirus Groups II and III Reveals Unique Features of Both Virus Groups. J. Virol.
76: 5813-5821
[Abstract]
[Full Text]
-
Oberste, M. S., Maher, K., Pallansch, M. A.
(2002). Molecular Phylogeny and Proposed Classification of the Simian Picornaviruses. J. Virol.
76: 1244-1251
[Abstract]
[Full Text]
-
Witwer, C., Rauscher, S., Hofacker, I. L., Stadler, P. F.
(2001). Conserved RNA secondary structures in Picornaviridae genomes. Nucleic Acids Res
29: 5079-5089
[Abstract]
[Full Text]