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Journal of Virology, November 2001, p. 11056-11070, Vol. 75, No. 22
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.22.11056-11070.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Structure and Assembly of Intracellular Mature
Vaccinia Virus: Thin-Section Analyses
Gareth
Griffiths,1,*
Norbert
Roos,2
Sybille
Schleich,1 and
Jacomine Krijnse
Locker1
European Molecular Biology Laboratory, 69117 Heidelberg, Germany,1 and Electron
Microscopy Unit for Biological Sciences, Department of Biology,
University of Oslo, Blindern, N-0316 Oslo, Norway2
Received 23 March 2001/Accepted 21 August 2001
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ABSTRACT |
In the preceding study (see accompanying paper), we showed by a
variety of different techniques that intracellular mature vaccinia
virus (vaccinia IMV) is unexpectedly complex in its structural organization and that this complexity also extends to the underlying viral core, which is highly folded. With that analysis as a foundation, we now present different thin-section electron microscopy approaches for analyzing the IMV and the processes by which it is assembled in
infected HeLa cells. We focus on conventional epoxy resin thin sections
as well as cryosections to describe key intermediates in the assembly
process. We took advantage of streptolysin O's ability to selectively
permeabilize the plasma membrane of infected cells to improve membrane
contrast, and we used antibodies against bone fide integral membrane
proteins of the virus to unequivocally identify membrane profiles in
thin sections. All of the images presented here can be rationalized
with respect to the model put forward for the assembly of the IMV in
the accompanying paper.
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INTRODUCTION |
In the preceding paper (10a), we
outlined the theoretical and experimental arguments in support of our
cisternal-wrapping model of vaccinia virus assembly (36).
The data provided in the preceding paper also show that during assembly
the membranes of the intracellular mature vaccinia virus (vaccinia IMV)
and the underlying core are folded upon each other via a process
reminiscent of gift wrapping, but instead of having a planar
organization, the virus appears to be made up of intricate
tubular-cisternal domains that together make a complex labyrinth.
In the present study, we used thin-section electron microscopy (EM) in
combination with immunocytochemical labeling to focus in more detail on
the stages of vaccinia virus assembly, from the initial small crescent
to the final IMV. A background to the key historical references
detailing analyses of vaccinia virus assembly using thin-sectioned EM
material is given in the introduction of the preceding paper (10a).
Here, we emphasize the following points about the assembly of vaccinia
IMV. First, the endoplasmic reticulum (ER)-derived cisterna that will
assemble into the virus has a propensity to collapse tightly upon
itself, giving the impression of a single bilayer in cross-sections of
this flattened cisternae. Second, the tubules that we showed in the
preceding study to be an intimate part of the IMV structure can be
detected in continuity with the crescent at very early stages of
assembly; these 30- to 40-nm-diameter tubules have been
extensively described in the literature on vaccinia virus assembly
(3, 12, 20, 28, 36). Third, we extend our earlier model in
which the viral DNA preassembles on smooth-ER membranes prior to
entering the assembling particle. These membranes are continuous with
the viral envelope in what we argue is one cisternal structure that
folds upon itself to assemble the IMV.
The use, and especially the interpretation, of thin sections for EM is
not a subject to be taken lightly, especially with structures with the
complexity and the relatively small size of vaccinia virus. When a thin
section is produced, the loss of (most of) one dimension occurs; this
often makes profiles difficult to interpret (5, 7, 38).
The physics of cutting sections has been widely discussed but is poorly
understood (see references 4 and 10). The material is
always significantly compressed, at least transiently, during this
process, although in some cases plastic reformation may occur
completely. Interpretations of which molecules bind heavy-metal stains,
such as osmium or uranyl acetate, are always questionable when one is
dealing with membranes, since no one really understands what molecules
in the bilayer are responsible for the unit-membrane appearance. For
example, even quantitative removal of membrane lipids of chloroplasts
and mitochondria still gives clear unit membranes with osmium tetroxide
staining and epon thin sections (see reference 7 for a
discussion of this point). These kinds of observations are at odds with
the claim by Hollinshead et al. (12) (in support of a
one-membrane model for vaccinia IMV) that the usual trilaminar
appearance of membranes in plastic sections is invariably due to
binding of heavy-metal ions to phospholipid headgroups. It should be
noted that the molecular details of conventional staining methods for
EM were the subject of vigorous debates in the 1950s ands 1960s.
Although these debates are now forgotten, the relevant issues have
remained unresolved (see reference 7).
Despite these complications, if one wants to see the details and label
antigens in the central parts of the virus, one is obliged to use thin
sections, obtained either by traditional plastic-embedding methods or
with thawed cryosections. Both of these approaches depend on the use of
aldehyde fixatives, which have the potential to significantly alter
membrane structures. We feel confident that this is unlikely to be a
significant problem for vaccinia IMV or its assembly intermediates for
two reasons. First, a recent study of vaccinia virus-infected cells
prepared by freeze-substitution (in which the cells are rapidly frozen
and fixed at low temperatures) revealed no significant differences in
the various assembly intermediates or in the IMV versus conventionally
fixed cells (27). Second, our extensive cryo-EM studies
(10a, 29) show that the structure of the IMV prepared
without fixatives is not significantly different from that of virus
prepared with fixation.
Since the question of what structure is, or is not, a membrane is
absolutely crucial to the question of IMV structure and assembly
intermediates in the present and the preceeding papers, we again use
specific antibodies against the cytoplasmic domains of
well-characterized viral membrane proteins. Since these proteins are
very abundant, the pattern of labeling allows one to follow the pattern
of membrane profiles more convincingly. When these antigens are
enriched in membrane tubules, they are exposed on the outer
(cytoplasmic) surface of the tubule, where the labeling is especially
prominent. We emphasize that this labeling approach cannot
unequivocally help us to distinguish a single bilayer from a tightly
apposed cisterna. As explained in the accompanying paper (10a), all of the existing evidence favors a cisternal
model and the idea of a single membrane does not fit into any known cell biology paradigm. We start the second paper by providing further
support for this crucial point.
To label the viral membranes, we again took advantage of two
well-characterized IMV membrane proteins, P21 (A17L) and P16 (A14L),
and for one micrograph P8 (A13L), for which well-characterized polyclonal antibodies are available. We argue that strong labeling of a
membrane-like structure with both antibodies provides incontrovertible proof of the existence of a virally modified membrane or membranes. Identification of viral membranes is particularly important in the case
of viral membrane tubules that are continuous both with the rough ER
(RER) and with the crescent membranes (18, 31, 36) (see
below). The dimensions of most of these tubules are such that when
tubules are clearly identified in thin sections, they are almost
certainly embedded within the sections; under these conditions, luminal
antigens would be totally inaccessible. Since all of these antibodies
recognize the cytoplasmic domains of their respective antigens, they
can be expected to label the outside of the viral tubules (see also
references 18 and 31) An additional problem with such
tubules is that connectivities to other viral membranes are always seen
in projection rather than as direct continuities.
Most scientists would probably suggest that the easiest way to
understand the structure of a virus would be to serial section and
"simply" reconstruct the structure (as implied by Hollinshead ands
colleagues [12]). If one could produce almost infinitely thin sections through vaccinia virus, this might be a reasonable approach. However, it must be realized that although vaccinia virus is
a relatively large object, as far as viruses go, there are practical
limitations. In two to six thin sections (50 to 60 nm), one cuts
through the entire virus, depending on the orientation. In addition to
compression, further difficulties, such as the possible flow of
supporting resin and the unsolved physics of the sectioning process,
make it very difficult to accurately mount profiles on top of one
another during reconstruction attempts (although improved technology is
now available [see below]). These were especially evident in the
first serial-section analysis of vaccinia virus, performed by Morgan et
al. (21), which provided little three-dimensional
information, and none that was not already obvious from thin-section
analysis. Our attempts to interpret IMV structure by using serial
plastic sections also led us nowhere. We also strongly dispute the
claim of Hollinshead et al. (12) that the question of
whether the outer layer of the IMV is a single or double bilayer can be
resolved simply by tilting the specimen.
The recent introduction of new technology combining cryofixation and
dual-axis tomography offers many potentially important new approaches
to overcome the traditional problems involved in three-dimensional
reconstructions of structures such as vaccinia virus (2, 14,
19). Studies using such an approach are now in progress. Without
such technology, however, it is impossible to predict how far one can
interpret single- and double-membraned profiles in thin sections via EM.
The previous paper (10a) focused on the structure of the
isolated IMV and on its disassembly during entry or following treatment with dithiothreitol (DTT). Here our aim was to complement those three-dimensional data by examining thin slices through the IMV and, in
more detail, through the intermediate stages that start with the viral crescents.
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MATERIALS AND METHODS |
Cells, virus and antibodies.
The HeLa cells and their
infections with vaccinia virus were described by Krijnse Locker et al.
(15, 17). The antibodies against P16 (A14L), P21 (A17L),
and P8 (A13L) have been described previously (23,
31). The permeabilization of infected cells with streptolysin O
(SLO) was described by Krijnse Locker et al. (16).
Briefly, at 6 to 8 h after infection, cells were rinsed with
ice-cold phosphate-buffered saline and once with SLO buffer (25 mM
HEPES buffer [pH 7.4], 115 mM potassium acetate, 2.5 mM MgCl2) containing 1 mM DTT. SLO (purchased from S. Bhakdi,
University of Mainz) was added to this cold buffer at 1 µg/ml and
left on the cells for 10 min. Subsequently, the cells were rinsed with SLO buffer containing DTT but lacking SLO and warmed to 37°C for 10 to 15 min to extract cytoplasmic proteins. The cells were then fixed with 1% glutaraldehyde and processed for EM.
EM.
Fixation and preparation of cells for epoxy resin
embedding and for cryosections has been described previously
(10a, 36). The preembedding labeling for p8 (A13L
[31]) was done as described by Krijnse Locker et al.
(18). For a general overview of these techniques, see
reference 7.
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RESULTS |
Thin sections: conventional views.
As shown in the
accompanying paper (10a), the structure of the IMV is
incredibly complex. To facilitate our description of thin-sectioned
profiles, we start by presenting micrographs from conventional epoxy
resin sections, as well as a Tokuyasu cryosection, in which the IMV
membranes are always more distinct. These images, from HeLa cells
infected for 8 h, serve as a reference point.
Figure 1A shows crescents of
different sizes, as well as spherical profiles of immature viruses
(IVs). The DNA has already entered one IV particle. Immediately after
this stage, the particle undergoes a dramatic change of shape and
organization. The IV particle (inset 1) condenses (inset 2) and the
particle profile becomes oval to brick shaped, with an interior
membrane now clearly evident, often appearing dumbbell shaped in
profile (inset 3). The last inset shows the conversion of IMV to IEV by
the acquisition of a trans-Golgi network (TGN)-derived
cisterna (32). Two bilayers are evident in this cisterna.
That this is a cisterna seems to be the general concensus.

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FIG. 1.
Illustration of the assembly problem as seen in thin
sections of vaccinia virus-infected HeLa cells at 8 h
postinfection. (A, inset) Four consecutive stages in assembly of
vaccinia virus (from the EM negative of an epoxy resin section). From
left to right, a spherical immature virus (IV) (1) condenses to form a
more electron-dense, still-spherical intermediate (2). The latter
rearranges into an IMV (3), whose projection in this image is oval. The
IMV becomes engulfed by a trans-Golgi network-derived cisterna to form
the IEV (4). Arrows indicate the two cisternal wrapping membranes. (A)
An epoxy resin section of different stages in the assembly of the
crescents (arrowheads) and the IVs, which are usually perfectly
spherical in profile. The large arrow indicates the dense nucleoid of
DNA within an IV profile. The small arrow indicates the spicules. (B) A
relatively thick thawed cryosection of an infected cell showing
different profiles through the IMV. One particle (star) shows a
classical brick-shaped profile whose two membranes are indicated by
arrowheads. Note that all other profiles through IMV particles show
different shapes, depending on the plane of sectioning. However, in
most cases the two distinct membrane profiles (inner and outer) are
easily identified. The small arrow indicates the spicules. Bars, 100 nm.
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Figure
1B shows a cryosection of a group of IMV particles in the
perinuclear region of an infected cell. Based on its overall
density,
and by comparison with results from an earlier, quantitative
study
(
10), this section is estimated to be ~100 to 120 nm
thick
(when sectioned), and, depending on the orientation, close to
the
whole volume of the particle can be embedded in such sections.
There
are two distinct membrane profiles around a rectangular-shaped
profile.
It is easy to be misled into selecting this profile as
well as to
assume that the IMV is a "brick" (and select such images
for
demonstration). However, how does one interpret all of the
other
particles in this image? Without considering our data from
the
accompanying paper (
10a), it is at first glance difficult
to imagine that these are simply different orientations through
essentially similar (if not identical) IMV particles. It is also
equally difficult to imagine that these presumedly identical IMV
particles have arisen from the spherical, regular precursors shown
in
Fig.
1A. From this paper it, will become apparent that everywhere
the
membrane profiles become "fuzzy," the membranes are folding
within
the thickness of the section. A close inspection of this
micrograph
reveals unexpected complexity (see the corresponding
figure legend). It
must be realized that the negatively stained
membranes in these thawed
cryosections appear white and are better
preserved than those in
conventional plastic sections, for which
harsh solvents are
used.
Since the vaccinia IMV must be a fairly robust structure that is not
detectably altered by aldehyde fixation or by cryosectioning,
it seems
likely that the complexity of the different IMV profiles
shown in Fig.
1B is a faithful representation of quasi-two-dimensional
views of a
virus that in three dimensions is very complex. This
figure also
clearly illustrates how serious the information loss
can be when one
aims to gain an understanding of a complex three-dimensional
structure
from two-dimensional
sections.
Sections of SLO-permeabilized cells and labeling of viral membrane
proteins.
Since the presence of cytoplasmic proteins often
obscures fine details in thin sections of cells, for many experiments
we took advantage of the use of SLO to selectively permeabilize the HeLa cells and thereby remove cytoplasmic proteins by incubating the
permeabilized cells for a few minutes in buffer before fixation (16). This procedure greatly increases the contrast of
membranes and other structures; it can also increase accessibility of
antibodies to antigens that are on the cytoplasmic surface of membranes
when thin sections of such cells are labeled. The fact that many
complex in vitro processes can be reconstituted in such permeabilized cells indicates that this procedure is not likely to destroy cellular structure.
Figures
2A and B show
plastic (Epon) sections of infected HeLa cells at 6 h
postinfection. Contrast in these SLO-permeabilized
cells is enhanced by
the removal of cytosolic components. The
crescents are in direct
continuity with the RER, but it is evident
that the cisternal membranes
collapse onto each other in the crescent.
Figure
2A also shows that,
depending on the plane of the section,
two crescent profiles often can
be seen to intertwine in opposite
orientation in what appears to be a
single virus precursor. This
is also evident in the cryosections in
Fig.
2C and D. The flattening
of what is originally a cisterna, in
which the membranes are well
separated, into a more typical RER-like
structure is evident in
these figures. We believe that the two
crescents in Fig.
2A are
part of one structure, all continuous with the
ER. While Fig.
2C shows an unlabeled preparation, Fig.
2D and E show
single labeling
for an antibody that recognizes the cytoplasmic domain
of the
IMV membrane protein P16. This antibody, as well as anti-P21,
labels the concave, but not the convex, aspect of the crescent.
Figures
2C and D show an early step in assembly. The image in
Fig.
2E shows two
long tubules, labeled for P16, that are continuous
with two different
parts of the inner aspect of the crescent.
This connection is most
clearly seen in the concavity of the crescent.
These tubules have the
same diameter (~30 to 40 nm) as the tubules
revealed in the IMV in
the accompanying paper, some, but not all,
of which label for P16. In
our earlier study, we showed that many
of these smooth tubules are in
direct continuity with the RER-nuclear
envelope system
(
36). Collectively, the data argue that virally
modified
smooth-ER tubules are precursors of tubular structures
that become an
integral part of the mature IMV.

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FIG. 2.
Details of early crescent formation at 6 h
postinfection in HeLa cells that were permeabilized with SLO prior to
fixation. (A and B) Epoxy resin sections showing connectivities (large
arrowheads) between viral crescents (small arrowheads) and cellular ER;
the ribosomes are indicated by arrows. Note that the crescent cisternae
collapse to give the appearance of only one membrane existing in the
crescent domain. (C and D) Thawed cryosections through two adjacent and
oppositely oriented (as a result of the infolding process that leads to
IMV assembly) crescent domains (arrowheads). The sections in
panels D and E were labeled with anti-P16 (cytoplasmic domain). The
arrows in panel D indicate membranes in continuity with the viral
crescent (arrowheads). Note that the label is well separated from the
crescent membrane in both panels D and E and that in panel E it
extends into the tubular extension (arrows) that emanate from the
inner, concave aspect of the crescent. Bars, 100 nm.
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Figure
3 shows plastic-section images of
SLO-permeabilized cells that reveal details of the IV membranes.
Figures
3A to D
show continuities between the flattened crescent
membranes, tubules,
and cisternal elements in which the membrane
bilayers are clearly
evident. These images show clearly that membrane
invagination
leading from the ends as well as more central parts of the
crescent
enters the concavity enclosed by the crescent. Figure
3E and,
especially, Fig.
3C also make the point, alluded to above, that
two crescent domains, connected by irregular membrane domains,
make up one viral precursor, evident as an S-shaped profile in
Fig.
3C.
Although poorly preserved after embedding, the top left
profile of the
crescent is possibly continuous with the RER.

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FIG. 3.
Epoxy resin sections of crescents from SLO-permeabilized
infected cells at 6 h postinfection. In these images, the crescent
domains (large arrowheads) are in continuity with cisternal (arrows)
and tubular (small arrowheads) domains. The individual membrane
bilayers can be clearly seen in these images (arrows). Note also the
propensity of the crescent to form an S-shaped structure (Fig. 2C), as
well as the apparent requirement of two distinct crescent domains for
assembly into the precursor of one IV (C and E). Bars, 100 nm.
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To document in more detail the presence of smooth membranes that are
connected to the crescents, we next studied cryosections
of
SLO-permeabilized infected cells that were double labeled for
the
cytoplasmic domains of two vaccinia virus membrane proteins,
P21 and
P16 (Fig.
4). At a low magnification
(Fig.
4A), these
membranes connect crescents across large parts of
cytoplasmic
territory. At a higher magnification (Fig.
4B to D), these
labeled
membranes clearly connect to the outer crescent membranes and
to internally located IV membranes. Figure
4E shows an example
of the
membranes from the crescent that encloses viral DNA leading
directly to
more viral DNA, which can be identified by its characteristic
~2.5-nm
periodic repeat.

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FIG. 4.
Visualization of viral membranes in thawed
cryosections of vaccinia virus-infected cells at 6 h
postinfection, using anti-P21 as well as anti-P16 antibodies. (A) A
low-magnification overview of two IVs single labeled for P16. Note the
extensive tubular membrane labeling that connects the ER network with
developing IVs. (B to E) sections were double labeled with anti-P16
(10-nm gold particles) as well as anti-P21 (5-nm gold particles). Note
the uninterrupted progression of label from the crescents and
IVs to the connecting membrane tubules. (E) IV has enclosed DNA,
while a second domain of DNA (asterisk), with its 2.5-nm periodicity
evident, is seen adjacent to the IV, in close to P16-labeled membranes.
Bars, 100 nm.
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Figure
5A shows an early stage of a
crescent in an SLO-permeabilized cell that was labeled with an antibody
to P8 (A13L) followed
by gold before being embedded. This image shows
the S-shaped organization
of the membrane cisterna at a stage that
precedes the collapse
into the tight crescent domain. The labeling for
P8 is found on
both sides of this cisterna. In contrast to P21 and P16,
which
are exclusively on the inner aspect of the crescent and are not
significantly exposed on the outside of the IMV, P8 is distributed
to
both the inner and outer membranes of the crescent (
31).

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FIG. 5.
(A) An Epon section of infected cell (6 h postinfection)
that had been labeled with anti-P8 and 5-nm gold particles before being
embedded (after permeabilization). Note the S-shaped labeled cisterna
whose membrane is mostly distinct. However, at a few sites (arrowhead),
the two cisternal membranes show a local tendency to collapse
(arrowhead). (B to E) Epoxy resin sections showing the close
relationship between the viral DNA (which has the characteristic 2.5-nm
periodic repeat and is very electron dense), the viral crescents, and
the cellular ER. (B) DNA (D) is in the dense factory region, adjacent
to a forming IV (the arrowhead indicates continuity between the
crescent domain and a tubular element [arrow]). (C) At 10 h
postinfection, there is extensive ER that is closely apposed on much of
the surface of the DNA. The arrowhead indicates close continuity or
contiguity between the ER next to the DNA (D) and a viral crescent.
Note also that the profiles of DNA in panel B and in some parts of
panel C are not in obvious contact with the ER. Details of the close
apposition of ER cisternae with viral DNA are evident in panels D and E
(8 h postinfection). Bars, 100 nm.
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DNA entry intermediates and sealing of the IMV.
The remaining
epoxy section micrographs, in Fig. 5B to E, document the appearance of
the viral DNA and its relationship to the crescents, as well as to the
ER. Figure 5B shows the DNA apparently free of membranes, adjacent to
an IV that also shows the inward folding of a tubule emanating from the
crescent. In Fig. 5C, different pieces of DNA apparently free of
membrane are seen (right side of the image), bounded on one or both
sides with ER membrane (center of image). There is evidence of a likely
continuity between a crescent and a part of the ER that is attached to
the DNA. In Fig. 5D and E, discrete DNA structures are sandwiched
between closely apposed ER cisternae. It should be noted that the
non-membrane-bound parts of these DNA structures end rather abruptly;
we presume that at these sites the DNA may end up in loops.
Figure
6 shows images
of the viral DNA in cryosections that also show the localization of P21
and P16. These images show the
intimate association of the viral smooth
membranes, enriched in
P21 and P16, with both the DNA and the viral
crescents. These
viral membranes can impinge closely on the DNA, but in
general,
when ER membranes are closely apposed to the DNA (as in Fig.
5D
and E), they generally exclude the two viral membrane proteins.
This
is also evident in Fig.
7A, which shows
that only low, albeit
specific, levels of labeling for both P21 and P16
are found in
the ER that attaches to the DNA. Of all the many
antibodies against
vaccinia virus proteins that we have tested, only
one appears
to be enriched in membranes attached to the DNA (see
Discussion).

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FIG. 6.
Details of close apposition of crescents or
IVs, DNA, and P16- and P21-labeled membranes. In all images, DNA is
indicated by D, P16 is labeled with 5-nm gold particles, and P21 is
labeled with 10-nm gold particles. The low degree of labeling of the
crescent in panel C is probably due to the fact that the periphery of
the crescent is embedded within the section and therefore inaccessible
to antibody. Note that the crescent in panel F (large arrowhead) shows
two distinct membrane profiles. The small arrowhead in this figure
indicates a cross-section of a tubular membrane profile. In panels D
and F, the DNA profiles are not intimately associated with P16- and
P21-enriched ER domains, while in panels B and E these domains are seen
in close contact with parts of the DNA. In panel F, the two membrane
profiles of a beginning crescent are distinct and are indicated by two
arrows. Bars, 100 nm.
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FIG. 7.
(A) Cryosection (8 h postinfection) of an
infected cell that was double labeled for P21 (10-nm gold particles)
and P16 (5-nm gold). Note the labeling of membrane profiles closely
attached to the DNA and emanating from this region. The ER domains
directly adjacent to the DNA have only two gold particles for P21 and
one for P16; these proteins are evidently mostly excluded from these
domains. (B and C) Plastic sections showing different views of the
viral DNA entering the IV. (B) Membrane profiles are not evident near
the DNA (arrowhead). (C) The electron-dense DNA is closely attached to
membrane tubular structures that seem to enter the IV (arrow). The
large arrowheads on the right of this image show putative DNA elements
adjacent to a developing crescent (small arrowhead). Bars, 100 nm.
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The images in Fig.
7B and C and Fig.
8A show sections
through particles that are engulfing the DNA. The complexity of this
process becomes apparent in these images. In these micrographs
(as in
Fig.
5 and
6), the DNA can be seen either to have no associated
membrane profile (Fig.
7B) or to be partly covered, either on
one side
(Fig.
7C) or on two sides (Fig.
5D and
7A). The simplest
interpretation
of all of these images is that the DNA "brick"
enters the virus
engulfed on one side only by a membrane cisterna,
like a hotdog in a
bread roll. Sections parallel to the top of
the structure reveal only
DNA (the top of the hot dog protruding
above the roll). Sections
perpendicular to this plane will give
profiles with a cisterna on one
(bottom) side while the top is
free. Most sections through the base of
the structure will appear
as DNA with cisternae on opposite sides.
Depending on the plane
of the section, some images of the IV that show
DNA can have associated
membrane profiles (as in Fig.
5C to E or Fig.
7C), while others
are seemingly free of membranes (as in Fig.
7B and
8A).

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FIG. 8.
A gallery of different intermediates
in the process of DNA entry into the IV, and some aspects of the
complex morphogenetic changes that accompany the conversion of the
spherical IV into the more-brick-shaped IMV. (A, G, H, J, and K) Epon
sections; (B to F and I) cryo-sections. Note that the DNA profile (D)
inside the IV in panel A is not surrounded by visible membranes,
whereas that in panel B it is lined on two sides by membrane profiles
(arrowheads). The latter develop into the membrane profiles that
eventually surround the core (arrowheads in panels C to J). The arrows
in panel J indicate possible tubular extensions of a stage just before
the assembly of the IMV. In panel K, the particle appears almost like
an IMV except that a large tubular or cisternal extension (arrow) has
not yet attached closely to the particle. The gold in panel C shows
labeling for P16; in this image, the separation of the membranes is
sufficient to conclude that two of the gold particles are associated
with the developing core membrane. Bars, 100 nm.
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Figure
8 shows a gallery of images in which late intermediates in IMV
assembly have been captured before preparation for epoxy
resin
embedding (Fig.
8A, G, H, J, and K) or cryosectioning (Fig.
8B to F and
I). Notwithstanding the complexity, the development
of the core
membrane, with a layer of spicules that are similar
to those seen
protruding from the IV surface, can be seen (Fig.
7A). These images
show clearly how this core membrane, which we
argue is a flattened
cisterna, is well separated from the outer
crescent cisterna. Moreover,
in Fig.
8I it can be seen that the
core membrane profile exhibits a
sharp (almost 90°) angular bend
when viewed at the appropriate angle.
In the accompanying paper
(
10a) we defined this
corner as being the "front" and "left"
of the particle. The
evaluation of many such images suggested
to us that the assembly of the
core is the driving force for the
switch from a spherical IV to a more
"brick-like"
IMV.
Late stages of assembly, just prior to IMV sealing, are shown in Fig.
8J and K. In the former, the tortuous connections between
the core
interior and the periphery are evident. Two membranous
projections
extend from the particle. In Fig.
8K, the almost fully
enclosed IMV
extends a cisternal profile in which the spicules
decorate only the
upper membrane layer. We suggest that this extended
cisterna is
captured just prior to the sealing of the
particle.
Labeling of profiles of IMV in infected cells.
To focus in
more detail on the appearance of the IMV in section profiles, we
performed double immunolabeling for P16 and P21 on thawed cryosections
of vaccinia virus-infected cells (8 h postinfection) (Fig.
9). This image can be compared with the
unlabeled image shown in Fig. 1B. Considering first only structural
aspects, these images show, again, how the appearance of the particle
varies greatly in different, random sections, although the outer
cisterna and the core cisterna are clearly evident in most particles.
In sections parallel to the "top" of the particle (Fig. 9A), the two cisternal membranes are almost parallel around the particle. The
center of this particle shows a membrane cisterna that has been
"shaved," exposing a stain-excluding membrane structure which represents the top of the core. In orthogonal sections, the particle reveals an oval to dumbell-shaped core profile that has been widely described (Fig. 9 A, inset; Fig. 9B). In some sections are seen one to
three spherical profiles (Fig. 9 A, inset; Fig. 9B) that correspond to
highly curved tubules described by Peters and Mueller (26) and in the accompanying paper
(10a).

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|
FIG. 9.
Cryosections of IMV in an infected cell (8 h
postinfection) that have been double labeled for P16 (10-nm gold
particles) and P21 (5-nm gold particles). (A) One particle has been
sectioned parallel to and just beneath the "top" of the particle
(as defined in the accompanying paper [10a]); the star indicates the
projection of a viral core lobe that is embedded within the section.
The outer membrane profile and the core membrane profile are indicated
by large arrowheads. The small arrowhead shows an oblique
section revealing the continuities between these curved tubular
membrane structures and more extended regions. In the inset, the
~50-nm circular profiles in the core structure, seen in favorable
sections, are indicated by arrows. In panel B, one profile shows
three of these spherical structures (arrows). It is difficult to
precisely determine the localization of gold particles to particular
membrane profiles in these images because of overprojection
problems (the gold labeling is predominantly on the surface of
the section, whereas significant amounts of viral structures are
embedded within the bilayer). These images strongly suggest that the
labeling of both P16 and P21 extends to the core membrane. Bars, 100 nm.
|
|
With respect to the labeling of P21 and P16, caution must be taken in
interpretating the images in Fig.
9. First, these sections
are
relatively thick (~100 nm). Second, it is well known that
most of the
gold label seen on structures (especially dense structures)
in thawed
cryosections is invariably at the top surface of the
section (
7,
34,
37). In some IMV profiles, gold particles
labeling both
antigens seem to overlie the core membrane, whereas
in others the core
membrane appears unlabeled. Since membrane
tubules in the IV (above) as
well as some tubules in the IV (
10a)
label for
these antigens, these data collectively argue that the
inner aspect of
the outer cisterna and the highly folded membrane
tubules in the
subsequently assembled IMV have a high concentration
of these two viral
membrane
proteins.
 |
DISCUSSION |
The thin-section analysis we have presented in this and in
preceding papers fit well into our overall scheme (see Fig. 2 in the
accompanying paper [10a]). The data collectively argue
that vaccinia virus assembly is initiated by the assembly of new
domains in specialized smooth-membrane regions of the cellular ER
network. We suggest that this is a consequence of lateral segregation
of the viral membrane proteins in these domains, which have the innate capacity to segregate the cisternal and tubular subdomains, all in
continuity with the cellular ER. All existing evidence suggests that
this segregation excludes all cellular membrane (and nonmembrane) proteins (22), thus fitting well into a general strategy
used by many membrane viruses, enrichment of viral membrane proteins and exclusion of host proteins during assembly (9, 33).
A surprising conclusion of our model is that in essence the IMV
topologically consists of a single membrane in continuity with itself.
While the title of the Hollinshead et al. (12) paper is
thus correct, the details are quite different. Whereas for the latter
authors, and in Dales' view, the DNA is enclosed within this vesicle,
in our view the flattened vesicle (two membranes on each other) has the
DNA on its outer surface. In our model, both in the interface with the
DNA and on the outside of the IMV it is the cytoplasmic leaflet of the
bilayer that is exposed to the outside world. This is a unique feature
of poxviruses and related viruses compared to membraned viruses
in general. Other membrane viruses, as well as the extracellular
enveloped vaccinia virus (EEV), invariably expose their luminal
domains on their surfaces.
Vaccinia virus and its distant relative African swine fever virus
(ASFV) have many similarities in terms of their modes of assembly. Most
importantly for our vaccinia virus assembly model, ASFV begins its
assembly by a process that unequivocally involves ER wrapping (1,
30). For some reason, the cisternal membranes in this virus do
not flatten as do those of vaccinia virus. This phenomenon makes the ER
wrapping data indisputable in the case of ASFV and, by analogy,
provides compelling support for this model for vaccinia virus. Given
their many similarities in a number of complex processes, ASFV and
vaccinia virus must surely have shared a common ancestor in the distant past.
We have provided many lines of data that support our model that the
crescent and IV "single" membrane profile represents a flattened
cisterna which, at least early during assembly, is functionally and
structurally continuous with smooth-ER membranes; the latter are
themselves continuous with the intermediate compartment (IC) between the ER and the Golgi complex (6, 18, 31, 36). (At that time we referred to the crescent domain as being
connected to the intermediate compartment [IC], which was then a new
and relatively poorly characterized structure. While there is still dispute about whether this organelle is a separate entity or is a
subdomain of the ER (our view) or of the Golgi [see reference 8], it is generally agreed that the IC is the last
station for export from the ER to the Golgi apparatus. We therefore
prefer now to use the term smooth ER for the specialized membrane
domain which develops into viral membranes, to avoid giving the (false) impression that this modified viral domain functions in the export pathway from the ER to the Golgi complex.) In agreement with this ER-derived cisternal model, when two vaccinia IMV membrane proteins (but not the six EEV proteins known from other studies) were expressed by themselves in uninfected cells, they were shown to be efficiently targeted to pre-Golgi, smooth-ER membrane subdomains (reference 18 and unpublished data). We have also provided evidence
that the IMV cisterna does not fuse with itself to form two continuous layers of membrane around the virus but is rather folded upon itself
(29). We suggested that the particle is sealed by a
proteinaceous (or Velcro-like) plug that glues one cisterna upon itself
(29). One argument for such a model is the fact that
trypsin treatment of IMV allows access of the protease, as well as
uranyl acetate, into the core interior, a finding first described by
Peters (24, 25). If the IMV was completely sealed by a
single membrane layer, it could be difficult to imagine how such a
treatment could "open up" the particle.
We had previously argued that the viral DNA associates closely with
smooth-ER subdomains prior to entering the late IV stage particle
(6). Similar data were evident (but not explicitly pointed
out) in earlier work (11). This association is especially pronounced after treatment with rifampin (which blocks IV assembly) or
in a temperature-sensitive mutant, ts16, at the
nonpermissive temperature; under these conditions, assembly is blocked
at a late IV stage in which the DNA partially enters the particle
(6). All of our evidence argues that the smooth-ER domain
that binds the DNA excludes both cellular and, with one exception, all
viral markers that we have tested using antibodies. The exception is the membrane protein E8R, which localizes to some of these membrane domains, as well as to the core membrane (L. Doglio, S. Schleich, and
J. Krijnse Locker, unpublished data). In addition, in this study
we found small but significant amounts of the viral membrane proteins
P16 and P21 in these membranes, perhaps an indication of incomplete
sorting but, more importantly, providing functional evidence for
continuities between these domains and other virally modified smooth
membranes. In this paper, we have also provided additional structural
evidence for such continuities.
Our model predicts that the virally modified membrane domains that form
the crescent, the internal tubular-cisternal membranes of the IV, and
the membrane that binds the DNA are distinct but in direct continuity.
That ER membranes can segregate into different domains is known from
the observations that fundamentally different domains, such as the
rough ER, smooth ER, and inner and outer nuclear envelopes, can be
structurally in direct continuity, all parts of the greater ER network.
From our topological model (Fig. 2 in the accompanying paper
[10a]) we now propose the following sequence of events
for the assembly of the IMV. From considerations of the topology of the known proteins, very little protein mass is found in the luminal domain, and there are no luminally glycosylated IMV proteins. This
presumably facilitates the cisternal flattening that is evident. The
key processes are as follows:
(i) Viral membrane proteins segregate into separate membrane domains
of the ER via lateral self-aggregation, and host proteins are excluded.
(ii) At least three different extended domains are assembled. First is
the crescent curved cisternae. As suggested here, two distinct crescent
domains may be involved for each virus particle assembled; these are
connected to each other via S-shaped membrane links (see, e.g.,
Fig. 3C and E). Second and third, respectively, are the tubular and
cisternal domains that are continuous with the inner membranes of the
crescent that we argue develop into the tubulo-cisternal domains that
form a partial fold around the DNA.
(iii) These different domains, which presumably initially assemble as
functionally distinct entities, must then cooperate via a remarkable
process of self-organization in which DNA enters a particle that folds
upon itself, thereby effectively sealing the particle by a mechanism
that is sensitive to exogenously applied proteases, as well as to
reducing agents (15, 29).
The convex (outer) side of the membrane crescent cisterna fails to be
labeled by any of our antibodies against IMV membrane proteins until it
is at a fairly advanced IV stage (35). At this point, at
which the electron density of the late IV increases, the outside of the
particle rapidly acquires a high concentration of the peripheral
membrane protein P14. The interior, concave aspect of the crescent is
enriched from the first stages of assembly in the peripheral membrane
protein P65, the target of rifampin, while the outer aspect, as well as
the extended tubules, are mostly unlabeled. This protein, which we have
proposed to function as a temporary scaffold that stabilizes the highly
curved crescent, is degraded at about the time when the particle is
sealed (13). The other domains we can identify is made up
of tubules and loose cisternal domains; these, as well as the inner
aspect of the crescent, can be labeled on their (exposed) cytoplasmic
surfaces for the membrane proteins P16 and P21 (18, 31;
this study). Another membrane protein, P8, is present not only in these
membranes but also on the outer surface of the crescent and IMV
(31). As shown here (Fig. 5A), this protein associates
with curved cisternae before the latter flatten into the crescent structures.
The ability of proteins to be localized to outer and/or inner domains
of the crescent and IV can be easily rationalized by our cisternal
wrapping model, in which it is possible that membrane proteins diffuse
from one side of the cisterna to the other. This same phenomenon was
particularly evident with P16, which is usually excluded from the outer
membrane of the cisterna; when the viral structure is "loosened"
with DTT, this membrane protein can diffuse to the outer layer of the
IMV (see accompanying paper [10a]). We have at present
no molecular information on how the different viral membrane domains
cooperate to drive the assembly process.
In the third study in this series, we take advantage of a vaccinia
virus mutant lacking a key abundant core protein, P4a, in which
assembly is arrested (or slowed down) at a key step or steps in the DNA
entry process. These preparations provide access to a process that
normally must happen very quickly, since the intermediates (e.g., those
shown in Fig. 7 and 8) are normally quite rare.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: EMBL, Postfach
102209, 69117 Heidelberg, Germany. Phone: 49-6221-387267. Fax:
49-6221-387306. E-mail: griffiths{at}embl-heidelberg.de.
 |
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Journal of Virology, November 2001, p. 11056-11070, Vol. 75, No. 22
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.22.11056-11070.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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Malkin, A. J., McPherson, A., Gershon, P. D.
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McKelvey, T. A., Andrews, S. C., Miller, S. E., Ray, C. A., Pickup, D. J.
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Doglio, L., De Marco, A., Schleich, S., Roos, N., Krijnse Locker, J.
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Sancho, M. C., Schleich, S., Griffiths, G., Krijnse-Locker, J.
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Griffiths, G., Wepf, R., Wendt, T., Locker, J. K., Cyrklaff, M., Roos, N.
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