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Journal of Virology, November 2001, p. 10033-10040, Vol. 75, No. 21
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.21.10033-10040.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Adenovirus DNA Binding Protein Interacts with the
SNF2-Related CBP Activator Protein (SrCap) and Inhibits
SrCap-Mediated Transcription
Xiequn
Xu,1
Isaac
Chackalaparampil,1
M. Alexandra
Monroy,2
Maria T.
Cannella,1
Elizabeth
Pesek,1
John
Chrivia,2 and
Peter
Yaciuk1,*
Departments of Molecular Microbiology and
Immunology1 and Pharmacological and
Physiological Sciences,2 St. Louis
University Health Sciences Center, St. Louis, Missouri 63104
Received 12 June 2001/Accepted 25 July 2001
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ABSTRACT |
The SNF2-related CBP activator protein, SrCap (pronounced "sir
cap"), shares homology with the SNF2/SWI2 protein family. SrCap was
cloned through its ability to bind CBP. SrCap can function as a CBP
coactivator and can activate transcription in a reporter assay when
expressed as a Gal-SrCap fusion protein. A monoclonal antibody
raised against the carboxyl terminus of SrCap coimmunoprecipitates CBP/p300, supporting the model that SrCap is a CBP binding protein and
that these proteins can be found together in a cellular protein complex. In addition, several cellular proteins are
coimmunoprecipitated by the SrCap-specific antibody. Since adenovirus
E1A proteins interact with CBP/p300 proteins, we examined what proteins
could be copurified in a SrCap-specific coimmunoprecipitation assay from lysates of adenovirus-infected cells. While E1A proteins were not
detected in this complex, to our surprise, we observed the presence of
an infected-cell-specific band of 72 kDa, which we suspected might be
the adenovirus DNA binding protein, DBP. The adenovirus DBP is a
multifunctional protein involved in several aspects of the adenovirus
life cycle, including an ability to modulate transcription. The
identity of DBP was confirmed by DBP-specific Western blot analysis and
by reimmunoprecipitating DBP from denatured SrCap-specific protein
complexes. Using in vitro-translated DBP and SrCap proteins, we
demonstrated that these proteins interact. To determine whether this
interaction could affect SrCap-mediated transcription, we tested
whether increasing amounts of DBP could modulate the Gal-SrCap
transcription activity. We observed that DBP inhibited Gal-SrCap
transcription activity in a dose-dependent manner. These data suggest a
novel mechanism of adenovirus host cell control by which DBP binds to
and inactivates SrCap, a member of the SNF2 chromatin-remodeling
protein family.
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INTRODUCTION |
The adenovirus DNA binding protein,
DBP, is well studied for its role in adenovirus replication (3,
7, 12). DBP's replication function can be reconstituted in
vitro and involves functions and interactions of at least three viral
proteins, including the adenovirus DNA polymerase, precursor terminal
protein, and DBP. In vitro replication function can be enhanced by the
addition of two cellular transcription factors, nuclear factor I (NFI) and Oct1 (28). However, DBP is also implicated in several
other essential functions important in the adenovirus life cycle. These include virion assembly (21), host range determination
(1, 9), mRNA stability (5), and
transformation (23).
In addition, DBP has roles in transcriptional regulation. DBP can
enhance its own expression, and mutant studies demonstrate that only
the highly phosphorylated forms of DBP grant this activation (20). DBP can regulate transcription directed by virus
promoters (2). In these studies, DBP was shown to enhance
transcription from the adenovirus E1A, E2A, and major late promoters
and the adeno-associated virus P5 promoter but was also found to
slightly inhibit the adenovirus E4 promoter. The mechanistic difference that explains these opposing activities is unknown. DBP is also implicated in enhancing the binding of NFI to its recognition site in
the adenovirus replication origin (4, 25). NFI is a member
of a family of factors that function in both DNA replication and
transcription (14). Another target of DBP-induced
transcriptional modulation is the transcription factor USF (upstream
stimulatory factor). DBP enhances the binding of USF to its recognition
site, resulting in an enhanced stimulation of in vitro transcription by
USF (29). The fact that DBP can apparently both activate and inhibit transcription suggests that DBP is functioning through separate mechanisms.
In addition, DBP has been found in a stable cellular protein complex
with a molecular mass of more than 650 kDa (24).
This complex is devoid of viral replication proteins, suggesting that it is not a viral replication complex. The complex is also devoid of
nucleic acids, indicating that its protein-protein associations are
nucleic acid independent; nevertheless, this complex has the ability to
bind DNA. These data suggest that DBP has as-yet-unidentified cellular
protein interactions that may function in the adenovirus life cycle.
The SNF2-related CBP activator protein (SrCap) is a
high-molecular-weight protein that was cloned in a yeast two-hybrid
assay on the basis that it interacts with amino acids (aa) 227 to 460 of CBP (CREB-binding protein) (13). This region of
CBP was shown to be important for CBP to function as a CREB coactivator
(27). SrCap is a member of the SNF2 protein family of
DNA-dependent ATPases, whose members' functions include chromatin
remodeling, DNA repair, and regulation of transcription
(26). SrCap can enhance the ability of CBP to activate
transcription (13). SrCap and the adenovirus E1A proteins
both bind to overlapping binding regions on CBP (16, 27).
Using a mammalian two-hybrid reporter assay that functions through the
SrCap-CBP interacting domains, we have demonstrated that wild-type E1A
proteins, but not a CBP/p300-binding-negative E1A mutant, can inhibit
transcription activity in this system, presumably through E1A proteins
disrupting the SrCap-CBP interaction (13).
In this study, we used a monoclonal antibody raised against the
carboxyl-terminal 239 aa of SrCap to probe for SrCap-associated proteins. This approach identifies an apparent multiprotein complex that includes SrCap and CBP/p300 proteins. To our surprise, when this
protein complex was purified from lysates of adenovirus-infected cells,
DBP copurified along with this complex. We demonstrate that in
vitro-translated DBP and SrCap proteins can interact and that DBP can
inhibit SrCap-mediated transcription. These data suggest a novel
mechanism of adenovirus DBP-mediated transcriptional control.
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MATERIALS AND METHODS |
Plasmids.
To generate pcDNA-DBP, a DNA fragment was
amplified from adenovirus serotype 2 DNA that encoded the DBP reading
frame. The PCR primers encoded sequences that contain NheI
or BamHI sites and a consensus Kozak sequence, as well as an
approximately 20-nucleic-acid sequence 5' or 3' of the DBP sequence,
respectively. The DNA fragment encoding DBP was cloned into
pcDNA3.1(
)MycHis Version C (Invitrogen). The sequence of the
DBP coding region was confirmed by DNA sequence analysis, and DBP
expression from this plasmid was confirmed by immunoprecipitating DBP
from transfected cells using a DBP-specific monoclonal antibody. The
pGal-CAT, pGAL-VP16, and pGal-SRCAP plasmids were generated as
previously described (13). The SrCap gene's GenBank
accession number is AF143946.
Generation of monoclonal antibodies.
A monoclonal antibody
(designated 253) was raised against a highly purified His-tagged SrCap
fusion protein encoding carboxyl terminal aa 2733 to 2971. In addition,
a DBP-specific monoclonal antibody (designated 218.2) against highly
purified DBP from adenovirus type 2-infected HeLa cells was isolated.
These antibodies were generated by immunizing BALB/c mice and using
standard hybridoma development technology to isolate hybridoma cell
lines that secrete the SrCap and DBP antibodies (10).
Immunoprecipitations.
A549 cells were metabolically labeled
in 3 ml of Met-free, Cys-free Dulbecco's modified Eagle medium
containing Tran35S-label (100 µCi/ml; ICN) per
10-cm-diameter plate for 2 h prior to lysis and immunoprecipitated
as previously described (18). Typically, nearly confluent
A549 cells from a 10-cm-diameter plate were lysed in 1 ml of a buffer
containing 0.1% Nonidet P-40, 250 mM sodium chloride, 20 mM sodium
phosphate (pH 7.0), 30 mM sodium pyrophosphate, 5 mM EDTA, and 10 mM
sodium fluoride supplemented with 5 mM dithiothreitol and protease and
phosphatase inhibitors (100 kIU of aprotinin and 1 µg [each] of
leupeptin and pepstatin per ml). Lysates were precleared in the
presence of 100 µl of a 10% (wt/vol) slurry of Staphylococcus
aureus. Lysis using these nonionic detergent lysis conditions
tends to preserve protein-protein interactions (18).
Proteins were immunoprecipitated using 100 µl of hybridoma
supernatant and 100 µl of a 3% (wt/vol) slurry of Sepharose
CL-4B-protein A beads. Proteins were resolved on a sodium dodecyl
sulfate (SDS)-7.5% polyacrylamide gel, and the dried gel was
subjected to autoradiography. The SrCap-specific and M73 (E1A-specific)
antibodies are of the same isotype (immunoglobulin G2a). For the
denaturation experiment (see Fig. 5B),
35S-labeled SrCap-specific protein complexes were
purified on Sepharose CL-4B-protein A beads from lysates of
adenovirus-infected cells. A portion of this "native" SrCap immune
complex was run in lane 1. The remaining beads containing
SrCap-specific complexes were split into two equal portions,
resuspended in 50 µl of lysis buffer containing 1% SDS and 10%
2-mercaptoethanol, and boiled for 5 min. Samples were cooled, and 1 ml
of lysis buffer was added to each sample. Samples were spun briefly to
remove initial beads, and supernatants were transferred to new
microcentrifuge tubes. Proteins were reimmunoprecipitated with
SrCap-specific or DBP-specific monoclonal antibodies and Sepharose
CL-4B-protein A beads. Reimmunoprecipitated proteins were resolved on
an SDS-polyacrylamide gel. Adenovirus serotypes 2 and 5 were used in
these studies at a concentration of 50 to 100 PFU/cell.
Western blot analysis.
Proteins were resolved by
SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a
polyvinylidene difluoride (PVDF) membrane in transfer buffer (25 mM
Tris and 0.2 M glycine in 5% [vol/vol] methanol) in a Bio-Rad Trans
Blot apparatus according to the manufacturer's recommendation. The
membrane was blocked in phosphate-buffered saline (PBS) containing 5%
nonfat dry milk for 1 h, followed by incubation in PBS containing
primary antibody for 1 h. The membrane was washed three times with
PBS containing 0.1% Tween 20 (PBS-T) over a 30-min period. The
membrane was then incubated with a horseradish peroxidase-conjugated
goat anti-mouse secondary antibody (catalog no. NA931; Amersham
Pharmacia) for 1 h. The membrane was washed again three times with
PBS-T over a 30-min period. Proteins were visualized using an ECL
Western blotting detection kit (Amersham) and film.
In vitro translation.
Indicated plasmids containing the T7
promoter were transcribed and translated in reticulocyte lysate (TNT T7
coupled system; Promega) containing
[35S]methionine for 1 h. Reticulocyte
lysate containing translated protein(s) was immunoprecipitated with
SrCap-specific or DBP-specific monoclonal antibodies. Immunocomplexes
were washed extensively with lysis buffer, and the purified proteins
were resolved by SDS-PAGE. Labeled proteins were visualized by autoradiography.
CAT reporter assays.
Transfections were performed as
previously described (13). Cells were plated at 2.5 × 105/well in six-well plates 18 h prior to
transfection. Each transfection utilized 200 ng of pGal-CAT as reporter
plasmid and the indicated plasmids. The LipofectAMINE transfection
method was performed according to the directions of the manufacturer
(Life Technologies, Inc.). Cells were harvested 48 h after
transfection and assayed for chloramphenicol acetyltransferase (CAT)
activity using the phase-extraction method.
SrCap expression in baculovirus.
Baculovirus expressing a
histidine-tagged SrCap protein (aa 1 to 2971) was generated using the
BAC-to-BAC Baculovirus Expression System (BRL) following the
manufacturer's recommendations.
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RESULTS |
To characterize the SrCap protein, we have generated a monoclonal
antibody that specifically recognizes the carboxyl terminus of SrCap.
This was demonstrated by Western blot analysis using this antibody to
probe a membrane containing a His-tagged SrCap carboxyl-terminal 239-aa
fusion protein (Fig. 1, lane 1). This His-tagged SrCap fusion protein was the antigen used to induce the
immune response in the mouse. To exclude the possibility that the
antibody recognized the histidine portion of the immunogen, we ran
bacterial lysate from nontransformed cells (lane 2) or from cells
expressing a glutathione S-transferase (GST)-SrCap fusion
protein containing the same carboxyl-terminal amino acids as before
(lane 3). These results indicate that the monoclonal antibody
recognizes SrCap carboxyl-terminal sequences and that it does not
recognize the His portion of the antigen or show any aberrant
specificities to bacterial proteins.

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FIG. 1.
Characterization of the SrCap-specific monoclonal
antibody that was raised against the 239-aa carboxyl terminus of the
SrCap protein. Either purified His-tagged SrCap carboxyl terminus (lane
1), total cell protein from bacterial lysates (lane 2), or bacterial
lysates containing a GST-tagged SrCap fusion protein (lane 3) were
resolved by SDS-12% PAGE and transferred to a Western blot membrane.
Both His- and GST-tagged SrCap proteins contained the carboxyl-terminal
239 aa of SrCap. This membrane was probed with the SrCap-specific
antibody. Positions of His-GST fusion proteins and molecular mass
markers are indicated on the left and right, respectively.
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We tested the specificity of the antibody for endogenous SrCap protein
in eukaryotic cells by running 200 µg of total cell protein from Sf9
insect cells that were uninfected or infected with baculovirus
expressing the complete SrCap gene on a low-concentration SDS-PAGE gel.
The separated proteins were transferred to a membrane and probed by
Western blotting with the SrCap-specific antibody. A single prominent
protein of the predicted molecular mass (ca. 315 kDa) was detected only
in the lane containing total cell protein from Sf9 cells that express
the SrCap gene (Fig. 2, lane 1); this result indicates that the full-length SrCap protein can be recognized in eukaryotic cells, and the antibody does not show specificity for any
other proteins in these cells.

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FIG. 2.
The SrCap-specific antibody recognizes full-length SrCap
protein. Total cell protein from SF9 cells that were mock infected
(lane 2) or infected with baculovirus that expresses the complete SrCap
gene (lane 1) were resolved by SDS-5% PAGE and transferred to a
Western blot membrane. This membrane was probed with the SrCap-specific
antibody. Positions of baculovirus-expressed full-length SrCap and
molecular weight markers are indicated.
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The SrCap-specific antibody coimmunoprecipitates a series of
cellular proteins.
Since adenovirus E1A proteins bind to and
regulate the SrCap partner, CBP/p300, we were interested in knowing the
effect of adenovirus infection on endogenous SrCap complexes. To
determine what proteins are immunoprecipitated by the SrCap-specific
antibody in the presence or absence of adenovirus infection, proteins
from 35S-labeled lysates from uninfected or
adenovirus serotype 2-infected human A549 cells were harvested at
20 h after infection and immunoprecipitated with the
SrCap-specific or control antibodies. The SrCap-specific antibody
coimmunoprecipitated a series of cellular proteins from uninfected cell
lysates (Fig. 3, lane 2), consistent with
the expectation from its association with p300 that it is involved in
multicomponent protein complexes. This complex set of proteins was also
observed in coimmunoprecipitations from HeLa, 293, COS, Vero, Chinese
hamster ovary (CHO), and NIH 3T3 cells (data not shown).

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FIG. 3.
Several proteins are coimmunoprecipitated with the
SrCap-specific monoclonal antibody. Proteins from
35S-labeled uninfected ( ) or adenovirus-infected (+) A549
cell lysates were immunoprecipitated with control (E1A-specific
antibody M73), SrCap-specific, DBP-specific, or CBP/p300-specific
(NM11) monoclonal antibodies and resolved by SDS-7.5% PAGE, as
indicated. A549 cells were infected with adenovirus serotype 2 for
20 h prior to lysis. Positions of known proteins are shown to the
left. Positions of molecular mass markers are shown to the right. In
addition to the molecular mass markers we used the actual molecular
mass of CBP/p300 (ca. 265 kDa) to calculate the expected migration
position of SrCap (ca. 315 kDa).
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As expected, the immune complex included a protein of the expected size
of the SrCap protein (predicted unmodified size of
315 kDa) as
indicated in Fig.
3. Since SrCap was cloned on the
basis of its
interaction with CBP, we also wished to know whether
any of the
SrCap-associated proteins in the immune complex correspond
to the
CBP/p300 proteins. As shown, there is a 300-kDa protein
band present in
the SrCap coimmunoprecipitation that comigrated
with CBP/p300 proteins
purified by direct immunoprecipitation
with the p300/CBP-specific
monoclonal antibody NM11 (6) (Fig.
3, lane 6). We verified that the
300-kDa protein in the SrCap
immunoprecipitation is CBP/p300 by Western
blot analysis (described
below).
In infected cells, the SrCap-specific antibody coimmunoprecipitated a
similar series of proteins, but at least two infection-specific
bands
were apparent in the complex, migrating at 72 and 55 kDa
(Fig.
3, lane
3). These apparent viral proteins were also observed
in SrCap-specific
coimmunoprecipitations from lysates of adenovirus
serotype 5-infected
cells (data not
shown).
Since DBP is well expressed at 20 h after infection, we suspected
that DBP might be the 72-kDa virus-specific band in the
complex. We
tested this possibility by comparing SrCap-specific
and DBP-specific
immunoprecipitations. The 72-kDa virus-specific
band seen in the SrCap
immune complexes precisely comigrates with
adenovirus 72-kDa DNA
binding protein purified with DBP-specific
antibodies (Fig.
3, compare
lanes 3 and 5,
respectively).
It has previously been reported that DNA binding proteins can
coprecipitate nonspecifically due to contaminating DNA present
in the
cell lysate. This nonspecific association can be disrupted
by the
simple addition of micrococcal nuclease or ethidium bromide
to the cell
lysate (
17). Since DBP has DNA binding activity
and SrCap,
as a member of the SNF2 protein family, has a putative
DNA binding
activity, we tested whether they associate through
a "bridge" of
potential contaminating DNA present in the cell
lysate. Treatment of
SrCap-specific protein complexes with ethidium
bromide or micrococcal
nuclease did not disrupt any protein members
from this complex,
including the virus-specific bands, suggesting
that the SrCap protein
associations are DNA independent (data
not
shown).
Labeling of most of the host cell proteins visible in the lysate from
infected cells is less efficient than that in uninfected
cells. This is
typical of adenovirus-infected cells. We have demonstrated
in
time-course-of-infection experiments that the overall decrease
in
radioactivity incorporated into each of the cellular proteins
(Fig.
3,
compare lanes 2 and 3) correlates with the onset of adenovirus-induced
host cell shutoff that begins at the late phase of the virus life
cycle
(data not
shown).
CBP/p300 is present in SrCap-specific immunoprecipitations.
To
determine whether the 300-kDa protein immunoprecipitated by the
SrCap-specific antibody is CBP/p300, a PVDF Western blot membrane
containing SrCap-specific or CBP/p300-specific immunoprecipitated proteins was probed with the CBP/p300-specific monoclonal antibody, NM11 (6). As shown in Fig.
4, CBP/p300 was clearly detected in the
SrCap-specific immunoprecipitation, and it comigrated with CBP/p300
immunoprecipitated directly by NM11 (compare lanes 1 and 3). This
result indicates that members of the CBP/p300 protein family are
present in these complexes. No 300-kDa signal was detected in the
control immunoprecipitation (lane 2).

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FIG. 4.
CBP/p300 is present in the SrCap-specific monoclonal
antibody coimmunoprecipitation. Purified proteins from either the
SrCap-specific, no-antibody control, or CBP/p300-specific (NM11)
immunoprecipitations from HeLa cell lysates were resolved by SDS-PAGE
and transferred to a PVDF Western blot membrane, as indicated. After
blocking, the membrane was probed with NM11. Bound antibody was
detected by ECL. The position of CBP/p300 is indicated to the left.
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The adenovirus DNA binding protein is present in SrCap-specific
immunoprecipitations.
Since an apparent adenovirus-encoded 72-kDa
protein is observed in the SrCap-specific coimmunoprecipitation, we
tested whether this protein is DBP by DBP-specific Western blot
analysis of the SrCap protein complex (Fig.
5A) or by immunoprecipitating DBP directly from denatured 35S-labeled SrCap protein
complex (Fig. 5B). As shown in Fig. 5A, DBP was obtained only from
SrCap protein complexes coimmunoprecipitated from lysates of
adenovirus-infected cells and not from SrCap protein complexes isolated
from uninfected cells (lane 2). The detected DBP protein in lane 1 comigrated with the DBP that was directly immunoprecipitated with a
DBP-specific monoclonal antibody (lane 3). DBP was not observed in a
DBP-specific immunoprecipitation from uninfected cells (lane 4) or a
pRB control immunoprecipitation from adenovirus-infected cells (lane
5). As shown in Fig. 5B, putative DBP was immunoprecipitated from a
35S-labeled SrCap protein complex isolated from
lysates of adenovirus-infected cells (lane 3); this DBP comigrated with
DBP isolated with the SrCap protein complex (lane 1). This protein is
not observed in a control SrCap-specific immunoprecipitation (lane 2).
In addition, we have performed V8 protease digestions of the 72-kDa
SrCap-specific protein and DBP protein isolated by DBP-specific
immunoprecipitation and have observed identical proteolytic peptide
profiles (data not shown). We conclude from these data that the 72-kDa
protein observed in the SrCap-specific coimmunoprecipitations from
lysates of adenovirus-infected cells is DBP.

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FIG. 5.
The 72-kDa protein present in the SrCap-specific
coimmunoprecipitation is identified as the adenovirus DNA binding
protein, DBP. (A) Proteins from uninfected ( ) or adenovirus-infected
(+) A549 cell lysates were immunoprecipitated with the SrCap-specific
or DBP-specific monoclonal antibodies and resolved by SDS-PAGE and then
transferred to a PVDF Western blot membrane. The membrane was probed
with a DBP-specific monoclonal antibody. The position of DBP is
indicated to the left. Control antibody was specific for the
retinoblastoma gene product. (B) Proteins from uninfected ( ) or
adenovirus-infected (+) A549 cell lysates were immunoprecipitated with
the SrCap-specific or DBP-specific monoclonal antibodies. These immune
complexes were denatured (as described in Materials and Methods) and
reimmunoprecipitated with a DBP-specific monoclonal antibody. The
position of DBP is indicated to the left.
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DBP can interact directly with the SrCap protein in
vitro
To determine whether DBP can directly bind
to the SrCap protein, we translated these proteins in vitro and tested
whether SrCap-specific antibody could coimmunoprecipitate DBP through a
protein-protein association with SrCap. Due to difficulties with
translating full-length SrCap (2,971 aa), we used a construct that
encodes the carboxyl-terminal half of the SrCap protein (aa 1275 to
2971). This region of SrCap has the ability to mediate transcription in
the absence of its intact ATPase domain (13). The in vitro
translation products of the SrCap and DBP cDNAs are shown in Fig.
6, lanes 1 and 2, respectively. Portions
of these in vitro translation products were immunoprecipitated with the indicated antibodies. The SrCap-specific or pRB control antibody was
not able to immunoprecipitate in vitro-translated DBP (lanes 3 and 5, respectively), indicating that the SrCap-specific antibody does not
bind directly to DBP and that DBP does not nonspecifically come down in
these reactions. The DBP-specific and SrCap-specific antibodies were
able to immunoprecipitate a portion of the in vitro-translated DBP and
SrCap proteins, respectively (lanes 4 and 6). When the SrCap-specific
antibody was used to immunoprecipitate mixed portions of both in
vitro-translated DBP and SrCap proteins, DBP was detected, suggesting
that DBP can interact directly with the SrCap protein (lane 7). This
result also tentatively maps a DBP binding region within SrCap aa 1275 to 2971. We have attempted the converse experiment without observing
SrCap binding to DBP in a DBP-specific immunoprecipitation. This is
possibly due to competition of our DBP-specific antibodies and the
SrCap product for the same region of DBP. This DBP-SrCap interaction
does not rule out the possibility that DBP binds to other regions of
SrCap or has other protein-protein associations in the putative
SrCap-specific protein complex.

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FIG. 6.
DBP can bind SrCap in vitro. SrCap and DBP proteins were
in vitro translated as described in Material and Methods. Roughly 2%
of these translation products were run in lanes 1 and 2, respectively.
The remaining portions of each translation product were divided equally
into the indicated immunoprecipitation reactions. Proteins purified in
each of these immunoprecipitations were resolved by SDS-PAGE and were
detected by autoradiography. Positions of the SrCap and DBP proteins
are indicated to the left. Only alternating lanes of this gel were
loaded to avoid any possibility that detected proteins were due to gel
loading artifacts.
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DBP inhibits SrCap-mediated transcription.
We have previously
reported that SrCap, like other members of the SNF2 family, can
activate transcription of a CAT reporter plasmid when expressed as a
Gal-SrCap (aa 1275 to 2971) fusion protein (13). This is
the same region of SrCap that was shown to bind to DBP in Fig. 6. Since
DBP is found in a SrCap-specific coimmunoprecipitation and we have
demonstrated that DBP and SrCap proteins can interact, we tested
whether DBP had an effect on SrCap-mediated transcription. We
transfected a reporter plasmid, pGRE-CAT, which contains a promoter
with a GAL-responsive element, with plasmids expressing either Gal-VP16
or Gal-SrCap (1275 to 2971) fusion proteins together with increasing
amounts (0, 5, 25, 50, 150, or 500 ng) of pcDNA-DBP into CHO cells. CHO
cells were used because of their high transfection efficiency. In
addition, transfections were normalized to equal picomolar amounts of
plasmid DNAs (using decreasing amounts of empty vector control plasmid pcDNA3.1) and also to total amount of DNA (using salmon sperm DNA). The
relative amounts of CAT activity are shown in Fig.
7. As shown, increasing amounts of
transfected DBP had relatively little effect on Gal-VP16 CAT activity,
indicating that DBP did not nonspecifically inhibit transcription in
this system. However, Gal-SrCap activity was specifically inhibited by
DBP in a dose-dependent manner to less than 10%. DBP inhibition of
SrCap-mediated transcription was also observed in transfected HeLa
cells (data not shown).

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FIG. 7.
DBP inhibits SrCap-mediated transcription in a
dose-dependent manner. Regulation of SrCap-mediated transcription by
DBP was assessed by transient transcription assay. Chinese hamster
ovary (CHO TC9) cells were transfected with the reporter plasmid
pGal-CAT (100 ng), either pGal-SrCap (200 ng) or pGal-VP16 (10 ng), and
increasing amounts of pcDNA-DBP, as indicated. Transfections were
normalized to equal picomolar amounts of plasmid DNAs (using decreasing
amounts of empty vector pcDNA) and also to total amount of DNA (using
salmon sperm DNA). Values are the means ± standard error (error
bars) from two separate experiments in which each point was performed
in triplicate. The absolute CAT activities obtained for Gal-VP16 and
Gal-SrCap in the absence of pcDNA-DBP (0 ng) are 30,000 and 3,000 cpm,
respectively.
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DISCUSSION |
In this report, we identified a novel cellular target for
adenovirus DBP-induced host cell transcription control. We have found
that DBP can bind to the SNF2-related CBP-activator protein, SrCap, and
this interaction leads to inhibition of SrCap-mediated transcription.
SrCap is a member of the SNF2 protein family that was cloned based on
its ability to bind to CBP and was subsequently shown to function as an
activator of CBP (13). In addition, we have also found
that SrCap activates transcription of several promoters, including the
phosphoenolpyruvate carboxykinase (PEPCK), somatostatin,
enkaphalin, and mouse mammary tumor virus promoters. This activation
appears to function through CREB and glucocorticoid receptor-mediated transcription mechanisms (J. Chrivia,
unpublished observations) and supports the model that SrCap functions
as an activator of CBP.
In uninfected cells we demonstrate that SrCap and a series of cellular
proteins are purified by coimmunoprecipitation using a SrCap-specific
monoclonal antibody, indicating that SrCap is present in a
multicomponent cellular protein complex. This is consistent with the
fact that members of the SNF2 protein family exist in multiprotein
complexes (11). As expected, CBP and/or p300 proteins are
present in SrCap-specific coimmunoprecipitations, consistent with the
fact that SrCap was cloned as a CBP-binding protein and that members of
the CBP/p300 protein family also interact with several cellular
proteins, such as nuclear steroid receptors, basal transcription
factors, and RNA polymerase II (8).
It should be noted that recent advances in transcription and chromatin
remodeling have led to the identification of two distinct families of
chromatin remodeling proteins, those that remodel chromatin by
targeting and modifying DNA structure in an ATP-dependent mechanism
(i.e., SNF2 protein family) and those that remodel chromatin by
targeting and modifying proteins that are essential for maintaining chromatin structure, through acetyltransferase activity (i.e., CBP/p300
protein family). It has been proposed that these families act in
concert to coordinate remodeling of chromatin (22). The SrCap-CBP/p300 association represents a cellular protein complex that
contains members of both protein families. We speculate that the
SrCap-CBP/p300 proteins may function synergistically in transcription and chromatin remodeling.
CBP/p300 proteins are key cellular targets of adenovirus growth control
of host cells (19). The adenovirus protein E1A has been
demonstrated to block the transcriptional activity of several transcription factors which utilize CBP/p300 as a coactivator. E1A
binds to at least four distinct regions within CBP/p300: the amino-terminal end, the histone acetyltransferase domain, and two sites in the C-terminal end. Binding of E1A to the amino-terminal end of CBP also blocks the binding of SrCap to this region
(13). This result suggested that adenovirus infection
might alter the SrCap protein complex.
To our surprise, while E1A proteins were not observed, we found two
adenovirus infection-specific proteins associated with the SrCap
protein complex that migrated at 55 and 72 kDa. We have identified the
72-kDa SrCap-associated protein as the adenovirus 72-kDa DNA binding
protein, DBP. We verified that the 72-kDa protein is DBP by using three
separate experimental approaches: DBP was detected in a DBP-specific
Western blot analysis of the SrCap complex, DBP was immunoprecipitated
from denatured SrCap protein complex by DBP-specific monoclonal
antibody, and the presence of DBP was indicated by comparing the
partial proteolytic peptide digest pattern of 72-kDa SrCap-associate
protein with that of DBP. The lack of a SrCap signal in the
DBP-specific immunoprecipitation (Fig. 3, lane 5) is not surprising
since only a small percentage of DBP is associated with a large
cellular protein complex (24).
The DBP-SrCap complex protein associations were not effected by
micrococcal nuclease or ethidium bromide treatment, which digests or
disrupts the structure of DNA, respectively. This indicates that
although DBP is a DNA binding protein, association with the SrCap
protein complex is not through nonspecific binding to DNA. These
results are also consistent with previous studies that used these same
techniques to demonstrate that DBP exists as part of a
high-molecular-weight complex that is free of DNA (24). In addition, our in vitro studies demonstrate that DBP interacts directly
with SrCap. They indicate that a least one DBP binding site resides
within the C-terminal end of SrCap.
Since the same carboxyl-terminal region of SrCap that was demonstrated
to interact with DBP can function as a transcriptional activator when
expressed as a Gal-SrCap fusion protein in a CAT reporter assay, we
tested whether DBP could affect SrCap-mediated transcription. DBP was
found to inhibit SrCap-mediated transcription in a dose-dependent
manner, presumably through a direct protein-protein interaction with
SrCap. The fact that there was no inhibition of the control
Gal-VP16 transcriptional activator, even at the highest concentration
of DBP, suggests that inhibition is specific for the presence of SrCap
protein sequences in this system and argues against a model in which
inhibition is due to a general nonspecific inhibitory effect resulting
from DBP's DNA binding activity.
DBP-induced inhibition of a SrCap functional activity may contribute to
the fact that DBP is toxic to cells, as demonstrated by the fact that
stable DBP cell lines that constitutively express DBP cannot be made.
In this model, DBP is inactivating the transcriptional activity and
possibly the putative chromatin remodeling activity of SrCap. Since
SrCap is an activator of CBP/p300 proteins, which are themselves
chromatin remodeling proteins and key cell growth regulators that are
implicated in regulating many transcription factors, a DBP-SrCap
association could have detrimental effects on cell growth control.
Since the ability of adenovirus to mount a productive viral infection
is highly species specific and DBP is implicated in host range
determination, the DBP-SrCap interaction may also play a role in the
determination of host range. This can be envisioned since mutations in
DBP give it the ability to alter the host range of the virus
(15). These data make the DBP-SrCap interaction a
potentially intriguing mechanism of host cell regulation by DBP.
 |
ACKNOWLEDGMENTS |
We thank G. Chinnadurai, E. Moran, and W. Wold for helpful
discussions and reading the manuscript.
This work was supported by Public Health Service grant CA-68066 from
the National Cancer Institute.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Molecular Microbiology and Immunology, St. Louis University Health
Sciences Center, 1402 South Grand Blvd., St. Louis, MO 63104. Phone:
(314) 577-8439. Fax: (314) 773-3403. E-mail: yaciuk{at}slu.edu.
 |
REFERENCES |
| 1.
|
Anderson, C. W.,
M. M. Hardy,
J. J. Dunn, and D. F. Klessig.
1983.
Independent, spontaneous mutants of adenovirus type 2-simian virus 40 hybrid Ad2+ND3 that grow efficiently in monkey cells possess identical mutations in the adenovirus type 2 DNA-binding protein gene.
J. Virol.
48:31-39[Abstract/Free Full Text].
|
| 2.
|
Chang, L. S., and T. Shenk.
1990.
The adenovirus DNA-binding protein stimulates the rate of transcription directed by adenovirus and adeno-associated virus promoters.
J. Virol.
64:2103-2109[Abstract/Free Full Text].
|
| 3.
|
Chase, J. W., and K. R. Williams.
1986.
Single-stranded DNA binding proteins required for DNA replication.
Annu. Rev. Biochem.
55:103-136[CrossRef][Medline].
|
| 4.
|
Cleat, P. H., and R. T. Hay.
1989.
Co-operative interactions between NFI and the adenovirus DNA binding protein at the adenovirus origin of replication.
EMBO J.
8:1841-1848[Medline].
|
| 5.
|
Cleghon, V.,
K. Voelkerding,
N. Morin,
C. Delsert, and D. F. Klessig.
1989.
Isolation and characterization of a viable adenovirus mutant defective in nuclear transport of the DNA-binding protein.
J. Virol.
63:2289-2299[Abstract/Free Full Text].
|
| 6.
|
Dallas, P. B.,
P. Yaciuk, and E. Moran.
1997.
Monoclonal antibody NM11 recognizes a C-terminal epitope shared by p300 and CBP.
Hybridoma
16:273-275[Medline].
|
| 7.
|
de Jong, R. N., and P. C. van der Vliet.
1999.
Mechanism of DNA replication in eukaryotic cells: cellular host factors stimulating adenovirus DNA replication.
Gene
236:1-12[CrossRef][Medline].
|
| 8.
|
Goodman, R. H., and S. Smolik.
2000.
CBP/p300 in cell growth, transformation, and development.
Genes Dev.
14:1553-1577[Free Full Text].
|
| 9.
|
Harfst, E., and K. N. Leppard.
1999.
A comparative analysis of the phosphorylation and biochemical properties of wild type and host range variant DNA binding proteins of human adenovirus 5.
Virus Genes
18:97-106[CrossRef][Medline].
|
| 10.
|
Harlow, E., and D. Lane.
1988.
Antibodies: a laboratory manual.
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
|
| 11.
|
Havas, K., and I. O.-H. T. Whitehouse.
2001.
ATP-dependent chromatin remodeling activities.
Cell. Mol. Life Sci.
58:673-682[CrossRef][Medline].
|
| 12.
|
Hay, R. T.,
A. Freeman,
I. Leith,
A. Monaghan, and A. Webster.
1995.
Molecular interactions during adenovirus DNA replication.
Curr. Top. Microbiol. Immunol.
199(Part 2):31-48.
|
| 13.
|
Johnston, H.,
J. Kneer,
I. Chackalaparampil,
P. Yaciuk, and J. Chrivia.
1999.
Identification of a novel SNF2/SWI2 protein family member, SRCAP, which interacts with CREB-binding protein.
J. Biol. Chem.
274:16370-16376[Abstract/Free Full Text].
|
| 14.
|
Jones, K. A.,
J. T. Kadonaga,
P. J. Rosenfeld,
T. J. Kelly, and R. Tjian.
1987.
A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication.
Cell
48:79-89[CrossRef][Medline].
|
| 15.
|
Klessig, D. F., and T. Grodzicker.
1979.
Mutations that allow human Ad2 and Ad5 to express late genes in monkey cells map in the viral gene encoding the 72K DNA binding protein.
Cell
17:957-966[CrossRef][Medline].
|
| 16.
|
Kurokawa, R.,
D. Kalafus,
M. H. Ogliastro,
C. Kioussi,
L. Xu,
J. Torchia,
M. G. Rosenfeld, and C. K. Glass.
1998.
Differential use of CREB binding protein-coactivator complexes.
Science
279:700-703[Abstract/Free Full Text].
|
| 17.
|
Lai, J. S., and W. Herr.
1992.
Ethidium bromide provides a simple tool for identifying genuine DNA-independent protein associations.
Proc. Natl. Acad. Sci. USA
89:6958-6962[Abstract/Free Full Text].
|
| 18.
|
Moran, E., and P. Yaciuk.
1998.
Immunoprecipitation of E1A-containing protein complexes, p. 195-202.
In
W. S. M. Wold (ed.), Adenovirus methods and protocols. Humana, Totowa, N.J.
|
| 19.
|
Moran, E., and B. Zerler.
1988.
Interactions between cell growth regulation domains in the products of the adenovirus E1A oncogene.
Mol. Cell. Biol.
8:1756-1764[Abstract/Free Full Text].
|
| 20.
|
Morin, N.,
C. Delsert, and D. F. Klessig.
1989.
Mutations that affect phosphorylation of the adenovirus DNA-binding protein alter its ability to enhance its own synthesis.
J. Virol.
63:5228-5237[Abstract/Free Full Text].
|
| 21.
|
Nicolas, J. C.,
P. Sarnow,
M. Girard, and A. J. Levine.
1983.
Host range temperature-conditional mutants in the adenovirus DNA binding protein are defective in the assembly of infectious virus.
Virology
126:228-239[CrossRef][Medline].
|
| 22.
|
Pollard, K. J., and C. L. Peterson.
1998.
Chromatin remodeling: a marriage between two families?
Bioessays
20:771-780[CrossRef][Medline].
|
| 23.
|
Rice, S. A.,
D. F. Klessig, and J. Williams.
1987.
Multiple effects of the 72-kDa, adenovirus-specified DNA binding protein on the efficiency of cellular transformation.
Virology
156:366-376[CrossRef][Medline].
|
| 24.
|
Ricigliano, J. W.,
D. E. Brough, and D. F. Klessig.
1994.
Identification of a high-molecular-weight cellular protein complex containing the adenovirus DNA binding protein.
Virology
202:715-723[CrossRef][Medline].
|
| 25.
|
Stuiver, M. H., and P. C. van der Vliet.
1990.
Adenovirus DNA-binding protein forms a multimeric protein complex with double-stranded DNA and enhances binding of nuclear factor I.
J. Virol.
64:379-386[Abstract/Free Full Text].
|
| 26.
|
Sudarsanam, P., and F. Winston.
2000.
The Swi/Snf family nucleosome-remodeling complexes and transcriptional control.
Trends Genet.
16:345-351[CrossRef][Medline].
|
| 27.
|
Swope, D. L.,
C. L. Mueller, and J. C. Chrivia.
1996.
CREB-binding protein activates transcription through multiple domains.
J. Biol. Chem.
271:28138-28145[Abstract/Free Full Text].
|
| 28.
|
van der Vliet, P. C.
1995.
Adenovirus DNA replication.
Curr. Top. Microbiol. Immunol.
199(Part 2):1-30.
|
| 29.
|
Zijderveld, D. C.,
F. d'Adda di Fagagna,
M. Giacca,
H. T. Timmers, and P. C. van der Vliet.
1994.
Stimulation of the adenovirus major late promoter in vitro by transcription factor USF is enhanced by the adenovirus DNA binding protein.
J. Virol.
68:8288-8295[Abstract/Free Full Text].
|
Journal of Virology, November 2001, p. 10033-10040, Vol. 75, No. 21
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.21.10033-10040.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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