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Journal of Virology, October 2001, p. 8968-8976, Vol. 75, No. 19
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.19.8968-8976.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Adeno-Associated Virus Type 2-Mediated Gene
Transfer: Role of Cellular FKBP52 Protein in Transgene
Expression
Keyun
Qing,1,2,3
Jonathan
Hansen,1,2,3
Kirsten A.
Weigel-Kelley,1,2,3
Mengqun
Tan,1,2,3
Shangzhen
Zhou,4 and
Arun
Srivastava1,2,3,5,*
Department of Microbiology & Immunology,1 Walther Oncology
Center,2 Walther Cancer
Institute,3 and Division of
Hematology/Oncology,5 Department of Medicine,
Indiana University School of Medicine, Indianapolis, Indiana 46202, and Avigen, Inc., Alameda, California
945014
Received 27 February 2001/Accepted 22 June 2001
 |
ABSTRACT |
Although adeno-associated virus type 2 (AAV) has gained attention
as a potentially useful vector for human gene therapy, the transduction
efficiencies of AAV vectors vary greatly in different cells and tissues
in vitro and in vivo. We have documented that a cellular tyrosine
phosphoprotein, designated the single-stranded D-sequence-binding
protein (ssD-BP), plays a crucial role in AAV-mediated transgene
expression (K. Y. Qing, X.-S. Wang, D. M. Kube, S. Ponnazhagan, A. Bajpai, and A. Srivastava, Proc. Natl. Acad. Sci. USA
94:10879-10884, 1997). We have documented a strong correlation between
the phosphorylation state of ssD-BP and AAV transduction efficiency in
vitro as well as in vivo (K. Y. Qing, B. Khuntrirat, C. Mah,
D. M. Kube, X.-S. Wang, S. Ponnazhagan, S. Z. Zhou, V. J. Dwarki, M. C. Yoder, and A. Srivastava, J. Virol. 72:1593-1599, 1998). We have also established that the ssD-BP is phosphorylated by epidermal growth factor receptor protein tyrosine kinase and that the tyrosine-phosphorylated form, but
not the dephosphorylated form, of ssD-BP prevents AAV second-strand DNA
synthesis and, consequently, results in a significant inhibition of
AAV-mediated transgene expression (C. Mah, K. Y. Qing, B. Khuntrirat, S. Ponnazhagan, X.-S. Wang, D. M. Kube, M. C. Yoder, and A. Srivastava, J. Virol. 72:9835-9841,
1998). Here, we report that a partial amino acid sequence of ssD-BP
purified from HeLa cells is identical to a portion of a cellular
protein that binds the immunosuppressant drug FK506, termed the
FK506-binding protein 52 (FKBP52). FKBP52 was purified by using
a prokaryotic expression plasmid containing the human cDNA. The
purified protein could be phosphorylated at both tyrosine and serine
or threonine residues, and only the phosphorylated forms of
FKBP52 were shown to interact with the AAV single-stranded D-sequence
probe. Furthermore, in in vitro DNA replication assays, tyrosine-phosphorylated FKBP52 inhibited AAV second-strand DNA synthesis by greater than 90%. Serine- or threonine-phosphorylated FKBP52 caused
40% inhibition, whereas dephosphorylated FKBP52 had
no effect on AAV second-strand DNA synthesis. Deliberate overexpression of FKBP52 effectively reduced the extent of tyrosine phosphorylation of
the protein, resulting in a significant increase in AAV-mediated transgene expression in human and murine cell lines. These studies corroborate the idea that the phosphorylation status of the cellular FKBP52 protein correlates strongly with AAV transduction efficiency, which may have important implications for the optimal use of AAV vectors in human gene therapy.
 |
INTRODUCTION |
Adeno-associated virus type 2 (AAV)
is a small, nonpathogenic, single-stranded DNA-containing virus which
requires coinfection with a helper virus, usually adenovirus, for its
optimal replication (1, 31). In the absence of coinfection
with the helper virus, the wild-type AAV establishes a latent infection
in which the viral genome integrates into human chromosomal DNA in a
site-specific manner (22, 23, 45). The nonpathogenic
nature of AAV coupled with the remarkable site specificity of
integration prompted the development of recombinant AAV vectors for
gene transfer and gene therapy. Although recombinant AAV genomes do not
appear to integrate site specifically, AAV vectors have been
successfully used for gene delivery to a wide variety of cells and
tissues in vitro and in vivo (2, 3, 11, 12, 16-19, 21, 32-36,
47, 48, 51, 55, 57), as well as in phase I clinical trials for
gene therapy of cystic fibrosis and hemophilia B (11, 18).
However, the transduction efficiencies of AAV vectors vary greatly in
different cell types. Studies from two independent laboratories have
suggested that following infection, the viral second-strand DNA
synthesis is a rate-limiting step in efficient transduction by AAV
vectors (8, 9). We have documented that a host cell
protein, designated the single-stranded D-sequence binding protein
(ssD-BP), interacts specifically and preferentially with the D sequence
within the inverted terminal repeat (ITR) at the 3' end of the AAV
genome and, in its tyrosine-phosphorylated form, prevents viral
second-strand DNA synthesis, resulting in inhibition of AAV-mediated
transgene expression. ssD-BP is phosphorylated at tyrosine residues by
the epidermal growth factor receptor protein tyrosine kinase
(EGFR-PTK), and the phosphorylation state of ssD-BP correlates with the
AAV transduction efficiency in established and primary human cells in
vitro and in murine tissues in vivo (25, 26, 40, 42, 52,
53). Despite the crucial role that ssD-BP plays in AAV-mediated transgene expression, its identity has remained unknown.
In this report, we present data on the purification and
characterization of ssD-BP. The partial amino acid sequence of this protein, purified to homogeneity from HeLa cells, revealed 100% homology to a cellular protein, termed FK506-binding protein 52 (FKBP52), which binds the immunosuppressant drug FK506. This 52-kDa protein, which has also been shown to be a chaperone protein, is
ubiquitous, is phosphorylated, and localizes predominantly to the
nucleus, properties that are shared with ssD-BP. The purified recombinant human FKBP52 protein could be phosphorylated by both casein
kinase II (CK II) and EGFR-PTK. The purified protein was also shown to
interact with the AAV single-stranded D-sequence probe by
electrophoretic mobility shift assays (EMSA). Furthermore, in in vitro
DNA replication assays, EGFR-PTK-phosphorylated FKBP52 inhibited AAV
second-strand DNA synthesis by greater than 90%. CK II-phosphorylated
FKBP52 caused
40% inhibition, whereas unphosphorylated FKBP52 had
no effect on AAV second-strand DNA synthesis. Deliberate overexpression
of FKBP52 led to a reduction in tyrosine phosphorylation of the
protein, which resulted in a significant increase in AAV-mediated transgene expression in human and murine cell lines. These studies corroborate the idea that the cellular FKBP52 protein is a crucial determinant of AAV transduction efficiency, which in turn may have
important implications for the optimal use of AAV vectors in human gene therapy.
 |
MATERIALS AND METHODS |
Cells, viruses, plasmids, and antibodies.
The human cervical
carcinoma cell line HeLa, the adenovirus-transformed human embryonic
kidney cell line 293, and the murine fibroblast cell line NIH 3T3 were
obtained from the American Type Culture Collection (Manassas, Va.) and
maintained as monolayer cultures in Iscove's modified Dulbecco's
medium (IMDM) supplemented with 10% fetal bovine serum and 1% (by
volume) 100× stock solution of antibiotics (10,000 U of penicillin
plus 10,000 µg of streptomycin). Human AAV and adenovirus type
2 stocks were kindly supplied by Kenneth I. Berns (University of
Florida, Gainesville) and Kenneth H. Fife (Indiana University School of
Medicine, Indianapolis), respectively. The recombinant plasmids pQE-30
and pCMV
were obtained from Qiagen (Valencia, Calif.) and Clontech
(Palo Alto, Calif.), respectively. Antibodies specific for human FKBP52
(goat polyclonal immunoglobulin G [IgG]) and human
1 integrin (mouse monoclonal IgG1) were
purchased from Santa Cruz Biotechnology (Santa Cruz, Calif.) and
Chemicon Corp. (Temecula, Calif.), respectively.
Preparation of WCEs.
Whole-cell extracts (WCEs) from HeLa,
293, and NIH 3T3 cells were prepared according to the method described
by Muller (30). The total protein concentration was
determined by the Bio-Rad Laboratories (Hercules, Calif.) protein assay
kit, and the extracts were frozen in liquid N2
and stored at
70°C.
EMSA were performed as described previously (42, 53).
Briefly, DNA-binding reactions were performed in a volume of 20 µl
with 2 µg of poly(dI-dC), 2 µg of bovine serum albumin, and 12%
glycerol in HEPES buffer (pH 7.9). Ten micrograms of proteins from each
WCE were preincubated for 10 min at 25°C followed by the addition of
10,000 cpm of 32P-labeled D(
)-sequence
synthetic oligonucleotide (5'-AGGAACCCCTAGTGATGGAG-3') to
the reaction mixture. The binding reaction was allowed to proceed for
30 min at 25°C. In some experiments, specific (FKBP52) and nonspecific (
1 integrin) antibodies were also
used in supershift assays as described previously (15, 20)
with the following modifications. Briefly, the reaction mixture was
incubated with 2 µg of antibody on ice for 1 h and then at
25°C for 15 min. In some experiments, WCEs were also
immunoprecipitated with anti-FKBP52 antibody, and supernatants and
resuspended pellets were used in EMSA as previously described
(44). Bound complexes were separated from the unbound
probe on low-ionic-strength 4% polyacrylamide gels using
Tris-glycine-EDTA buffer (pH 8.5) containing 50 mM Tris-HCl, 380 mM
glycine, and 2 mM EDTA. Following electrophoresis, the gel was dried in
vacuo and autoradiographed with Kodak X-Omat film at
70°C.
Purification of ssD-BP.
WCE was prepared as described above
from
2.6 × 1010 HeLa cells purchased
from the National Cell Culture Center (Washington, D.C.). All steps
were carried out at 4°C. The WCE was subjected to ultrafiltration on
Centricon columns (Amicon, Beverly, Mass.) to remove proteins with
masses of less than 30 kDa. The rest of the WCE was fractionated
on a Sephacryl S-200 HR column (Sigma, St. Louis, Mo.). The column bed
volume was 100 ml, which was equilibrated with 2 bed volumes of buffer
A (20 mM Tris-HCl [pH 7.5], 50 mM NaCl, 1 mM
MgCl2, 0.5% NP-40, 0.5 mM phenylmethylsulfonyl
fluoride, 0.5 mM dithiothreitol). After the sample was loaded, the
column was washed and eluted with 2 bed volumes of buffer A. Four-milliliter fractions were collected, and the protein concentration
was determined. All fractions containing proteins were used in EMSA
with the AAV D-sequence probe as described above. All positive
fractions were pooled and fractionated by anion-exchange chromatography
on a DE-52 column. The column bed volume was 50 ml, which was
equilibrated with buffer A. After the sample was loaded, the column was
washed with 1 bed volume of buffer A followed by elution with a
continuous NaCl concentration gradient (50 to 500 mM). Two-milliliter
fractions were collected, and the protein concentration was determined. All fractions containing proteins were dialyzed overnight against buffer A, followed by EMSA. All positive fractions were pooled and
subjected to chromatography using a nonspecific ssDNA-agarose column
(Life Technologies, Rockville, Md.). The column bed volume was 2 ml,
which was equilibrated with buffer A. After the sample was loaded, the
column was washed with 1 bed volume of buffer A followed by elution
with a stepwise NaCl concentration gradient (100 mM to 1 M).
Two-milliliter fractions were collected and dialyzed overnight against
buffer A, followed by EMSA. All positive eluates containing the ssD-BP
were incubated with the ssD sequence-ligated streptavidin magnetic
particles (Boehringer Mannheim, Indianapolis, Ind.) according to the
instructions provided by the vendor. The bound ssD-BP was eluted from
the particles and electrophoresed on preparative sodium dodecyl sulfate
(SDS)-10% polyacrylamide gels. A single protein band with a mass of
52 kDa was excised and shipped to the Harvard Microchemistry
Facility, Harvard University (Cambridge, Mass.) for mass spectrometry
and protein microsequencing analyses.
Expression and purification of the recombinant human FKBP52
protein from Escherichia coli.
A prokaryotic
expression plasmid containing the human FKBP52 gene was generated by
PCR amplification from a HeLa cell Marathon-ready cDNA library
(Clontech) with the following primer pair: 5' primer, GATGACAGCCGAGGAGATGAAGGCGACCGA, and 3' primer,
GTTATGCTTCTGTCTCCACCTGAGACTGGC. The sequence of the PCR
product was confirmed by sequencing and then inserted into the pQE-30
prokaryotic expression vector. The recombinant FKBP52 protein was
produced and purified using the His tag purification system and
Ni2+ affinity chromatography (Qiagen) according
to the instructions provided by the vendor. A eukaryotic expression
plasmid containing the human FKBP52 cDNA gene under the control of the
cytomegalovirus (CMV) immediate-early promoter was also constructed by
standard methods as described previously (41).
In vitro phosphorylation assays.
In vitro phosphorylation by
EGFR-PTK was carried out as previously described by Weber et al.
(54) and Cybulsky et al. (4) with the
following modifications. The complete reaction mixture contained 1 µg
of the purified FKBP52 protein, 20 mM HEPES, 4 mM
MgCl2, 10 mM MnCl2, 50 mM
NaOV, 200 µM ATP, 10 µCi (0.37 mBq) of
[
-32P]ATP, and 1 U (15,000 U/mg) of purified
EGFR-PTK (CalBiochem, La Jolla, Calif.) with all appropriate controls.
In vitro phosphorylation by CK II (CalBiochem) was carried out as
previously described by McElhinny et al. (28) and Russo et
al. (43). Briefly, the complete reaction mixture contained
1 µg of the FKBP52 protein expressed in and purified from bacterial
cultures, 20 mM Tris-HCl, 50 mM KCl, 10 mM MgCl2,
50 mM NaOV, 200 µM ATP, 10 µCi (0.37 mBq) of
[
-32P]ATP, and 100 U (300,000 U/mg) of CK
II. The reaction mixtures were incubated at 30°C for 1 h and
electrophoresed on SDS-10% polyacrylamide gels. The gels were dried
in vacuo followed by autoradiography using Kodak X-Omat film at
70°C. In some experiments, in vitro phosphorylation assays with
EGFR-PTK and CK II were also carried out without the addition of
[
-32P]ATP. The tyrosine- and serine- or
threonine-phosphorylated FKBP52 proteins were then used in EMSA with
the radiolabeled D(
) probe as described above and in in vitro DNA
replication assays as described below.
In vitro DNA replication assays.
The appropriate AAV DNA
substrate containing the 3' hairpin structure was prepared and labeled
with [
-32P]ATP (3,000 Ci/mmol) by using T4
polynucleotide kinase as described previously (44). To
assess the effect of ssD-BP on AAV DNA replication (second-strand DNA
synthesis), 20 ng of the unphosphorylated, EGFR-PTK-phosphorylated, or
CK II-phosphorylated form of the purified FKBP52 protein was added to
the end-labeled 3'-hairpin ITR and all four unlabeled deoxynucleoside
triphosphates and incubated for 15 min at 25°C prior to adding the
Klenow enzyme. After the Klenow enzyme was added, the reaction mixtures
were incubated at 37°C for 30 min and then electrophoresed on 6%
polyacrylamide gels. The gels were dried and autoradiographed at
70°C as described above.
Western blot analyses.
To determine the levels of human
FKBP52 in transfected cell lines, approximately 2 × 106 cells were seeded in culture dishes, and
24 h later, WCEs were prepared by an SDS lysis procedure described
elsewhere (10). Total protein concentrations were
determined using the Bio-Rad protein assay kit, and 30 µg of protein
was separated by SDS-polyacrylamide gel electrophoresis on a 10%
polyacrylamide gel. After transfer to an Immobilon-P membrane
(Millipore, Bedford, Mass.), the membrane was blocked for 1 h at
25°C with 1× Tris-buffered saline (TBS; 20 mM Tris-HCl, pH 7.5, 150 mM NaCl), 0.05% Tween 20, and 5% nonfat dry milk (TBST-milk),
incubated with a 1:200 dilution of anti-FKBP52 antibody in TBST-milk
for 1 h at 25°C, and then washed three times in TBST. Following
incubation with a 1:2,000 dilution of horseradish peroxidase-coupled
anti-goat IgG antibody in TBST-milk for 1 h at 25°C, the
membrane was washed three times in TBST, and protein bands were
visualized with the ECL-Plus chemiluminescence detection kit (Amersham,
Little Chalfont, England) according to the instructions provided by the manufacturer.
Recombinant AAV-mediated transduction assays.
Approximately
105 cells per well were plated in a 12-well
plate. Twelve hours later, the cells were washed once with IMDM and then infected at 37°C for 2 h with 5 × 103 particles of a recombinant AAV vector
containing the
-galactosidase (lacZ) reporter gene driven
by the CMV immediate-early promoter (vCMVp-lacZ) per cell.
The cells were then incubated with complete IMDM containing 10% fetal
bovine serum and 1% antibiotics for 48 h. The
-galactosidase
activity was measured by the Galacto-Light Plus chemiluminescence
reporter assay (Tropics, Inc., Bedford, Mass.) according to the
manufacturer's instructions. The data were expressed as relative light
units per microgram of total protein and were within the linear range
of the assay.
 |
RESULTS |
ssD-BP is a cellular chaperone protein, FKBP52, an
immunophilin.
We purified ssD-BP to homogeneity from HeLa cells as
described in Materials and Methods. A small fraction of the protein was electrophoresed on an SDS-10% polyacrylamide gel followed by staining with Coomassie blue (Fig. 1A, lane 4). As
can be seen, a single protein band with a mass of
52 kDa was
obtained which interacted with the single-stranded AAV D(
) sequence
probe in EMSA. When this protein was excised from preparative gels and
subjected to protein microsequencing, the amino acid sequence of the
largest peptide, containing 24 amino acids, revealed 100% homology to a cellular protein, FKBP52, that binds the immunosuppressant drug FK506
(Fig. 1B). Several shorter peptides, ranging from 6 to 22 amino acids,
also showed 100% homology to FKBP52. FKBP52 is a 52-kDa cellular
protein, also known as an immunophilin (46), is
ubiquitous, is phosphorylated, and localizes predominantly to the
nucleus (5, 37, 38), several properties that are shared
with ssD-BP. The identity of ssD-BP as the cellular FKBP52 was tested
in the following two sets of experiments. In the first set, supershift
EMSA were performed using anti-FKBP52 antibody. The results are shown
in Fig. 2. As can be seen, the AAV
D-sequence probe (lane 1) formed a slower-migrating complex with WCE
from HeLa cells (lane 2) and a faster-migrating complex with WCE
from 293 cells (lane 3), consistent with our previously published
reports (40, 42); the inclusion of anti-FKBP52 antibody in
these assays resulted in a nearly complete supershift with HeLa (lane
4) and 293 (lane 5) WCEs, respectively. These supershifted complexes were not detected when anti-
1 integrin
antibody was used as an appropriate control (lanes 6 and 7). The AAV
D-sequence probe did not form a complex with either anti-FKBP52
antibody (lane 8) or anti-
1 integrin antibody
(lane 9).

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FIG. 1.
(A) Purification of ssD-BP from HeLa cells.
SDS-polyacrylamide gel electrophoretic pattern of purified ssD-BP. Lane
1, protein molecular size markers; lane 2, WCE of HeLa S3 cells (20 µg of total protein); lane 3, Oct2A factor, included as a positive
control, purified according to the standard protocol using the protein
purification kit supplied by the vendor (Boehringer Mannheim); lane 4, purified ssD-BP. The arrow indicates the 52-kDa ssD-BP. (B) Deduced
amino acid sequence of the human FKBP52 protein. The boldface
underlined amino acids represent the identified homology between ssD-BP
and FKBP52 (GenBank accession no. M88279).
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FIG. 2.
Electrophoretic mobility supershift assays and
immunoprecipitation of WCEs with anti-FKBP52 antibody. The AAV
D-sequence probe (lane 1) was incubated with WCEs prepared from HeLa
cells to yield a slower-migrating complex (lane 2; solid arrow) and
with those from 293 cells to form a faster-migrating complex (lane 3;
solid arrowhead). These complexes were supershifted by
incubation with antiFKBP52 antibody with HeLa (lane 4; open arrow) and
293 (lane 5; open arrowhead) WCEs, respectively, but not with
anti- 1 integrin antibody (lanes 6 and 7). No complex
formation occurred between the AAV D-sequence probe and either
anti-FKBP52 antibody (lane 8) or anti- 1 integrin
antibody (lane 9). When WCEs from HeLa and 293 cells were
immunoprecipitated with anti-FKBP52 antibody and supernatants and
pellets, following resuspension, were used in EMSA, prior
immunoprecipitation with anti-FKBP52 antibody eliminated ssD-BP from
WCEs from both HeLa and 293 cells (lanes 10 and 11), and it could be
recovered from the pellets (lanes 12 and 13).
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In the second set of experiments, WCEs from HeLa and 293 cells were
immunoprecipitated with anti-FKBP52 antibody, and the
supernatants and
pellets, following resuspension, were used in
EMSA. As can be seen in
Fig.
2, prior immunoprecipitation with
anti-FKBP52 antibody eliminated
ssD-BP from WCEs from both HeLa
and 293 cells (lanes 10 and 11), and it
could be recovered from
the pellets (lanes 12 and 13). Taken together,
these results corroborate
the notion that ssD-BP is FKBP52. However, it
was crucial to document
that (i) the FKBP52 protein is phosphorylated
in vitro by EGFR-PTK,
(ii) the FKBP52 protein binds to the AAV D(

)
sequence, and (iii)
tyrosine-phosphorylated FKBP52, but not
unphosphorylated FKBP52,
inhibits AAV second-strand DNA synthesis. Each
of these requirements
was experimentally tested as
follows.
FKBP52 can be phosphorylated at tyrosine residues by EGFR-PTK.
Previous studies have shown that FKBP52 can be phosphorylated in vitro
by CK II (29). Using in vitro phosphorylation assays, we
wished to document whether purified FKBP52 could also be phosphorylated by EGFR-PTK, since ssD-BP is phosphorylated by EGFR-PTK
(26). These assays were carried out as described in
Materials and Methods. Because both CK II and EGFR-PTK are known to be
autophosphorylated, assays were also carried out in the absence of
FKBP52. The results are shown in Fig. 3.
It is evident that FKBP52 is phosphorylated not only at serine or
threonine residues (lane 2), as reported previously (29),
but also at tyrosine residues (lane 4), consistent with our previous
studies (26).

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FIG. 3.
In vitro phosphorylation of purified FKBP52 protein by
CK II and EGFR-PTK. CK II was incubated in the absence ( ; lane 1) or
presence (+; lane 2) of 1 µg of FKBP52. Similarly, EGFR-PTK was
incubated in the absence (lane 3) or presence (lane 4) of FKBP52 as
described in Materials and Methods. The arrow indicates the
phosphorylated FKBP52 protein, and the arrowheads denote the
autophosphorylated CK II and EGFR-PTK proteins.
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Phosphorylation of FKBP52 dramatically stimulates its interaction
with the AAV D-sequence.
It was of interest to determine whether
the purified FKBP52 protein could bind to the AAV D(
) sequence. The
purified FKBP52 protein was used in EMSA with the AAV D(
) probe, with
and without prior in vitro phosphorylation by CK II and EGFR-PTK as
described above. The CK II and EGFR-PTK proteins were also used as
appropriate controls. The results are shown in Fig.
4. It is evident that little binding of
unphosphorylated FKBP52 to the D-sequence probe occurred (lane 2),
whereas FKBP52 phosphorylated at serine or threonine residues by CK II
(lane 3) formed a complex with the probe. CK II alone did not interact
with the D(
) probe (lane 4). FKBP52 phosphorylated at tyrosine
residues by EGFR-PTK (lane 5) formed two distinct complexes, whereas
EGFR-PTK alone did not interact with the D(
) probe (lane 6). There
are 16 tyrosine residues in FKBP52, and it is possible that the
faster-migrating complex in lane 5 is the partially phosphorylated
FKBP52. These results nonetheless corroborate the notion that the
ssD-BP is FKBP52.

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FIG. 4.
Electrophoretic mobility shift assays for the AAV D( )
sequence (lane 1) interaction with human FKBP52 purified from bacterial
cells without (lane 2) and with prior in vitro phosphorylation with CK
II (lane 3) and EGFR-PTK (lane 5), respectively. These assays were
performed as described in Materials and Methods. No interaction between
the probe and CK II alone (lane 4) or EGFR-PTK alone (lane 6) was
observed. Complexes presumed to contain the phosphorylated forms of the
FKBP52 protein are denoted by the solid arrows and arrowhead, and the
unphosphorylated form is denoted by the open arrowhead.
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Only phosphorylated forms of FKBP52 inhibit AAV second-strand DNA
synthesis.
We also wished to examine the effect of the
unphosphorylated and/or phosphorylated FKBP52 on AAV second-strand DNA
synthesis. The purified FKBP52 protein, with and without
phosphorylation with CK II or EGFR-PTK, was used in in vitro DNA
replication assays as described in Materials and Methods. As shown in
Fig. 5, the radiolabeled AAV hairpin DNA
template (lane 1) was readily converted into its duplex counterpart
following second-strand DNA synthesis by the Klenow enzyme (lane 2).
Prior incubation with the unphosphorylated FKBP52 protein had no effect
(lane 3), and CK II-phosphorylated FKBP52 inhibited second-strand DNA
synthesis by
40% (lane 4) as determined by densitometric scanning
of the autoradiographs. CK II in the absence of FKBP52 had no effect
(lane 5). FKBP52 phosphorylated by EGFR-PTK inhibited viral
second-strand DNA synthesis by >90% (lane 6), and EGFR-PTK alone had
no effect (lane 7). Thus, although the assay utilized here is somewhat
artificial, it documents the fact that the phosphorylated forms, but
not the unphosphorylated form, of FKBP52 inhibit viral second-strand
DNA synthesis.

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FIG. 5.
In vitro replication assays for the effects of the
purified FKBP52 protein, with and without phosphorylation by CK II or
EGFR-PTK, on AAV second-strand DNA synthesis. These assays were carried
out as described in Materials and Methods. The radiolabeled AAV hairpin
(HP) DNA template (lane 1) (shown schematically as the upper figure on
the left) was readily converted into its duplex counterpart (shown
schematically as the lower figure on the left) following second-strand
DNA synthesis by the Klenow enzyme (lane 2). Prior incubation with the
dephosphorylated FKBP52 protein had no effect (lane 3), while CK
II-phosphorylated FKBP52 inhibited second-strand DNA synthesis by
40% (lane 4). CK II in the absence of FKBP52 had no effect (lane
5). FKBP52 phosphorylated by EGFR-PTK inhibited viral second-strand DNA
synthesis by >90% (lane 6), and EGFR-PTK alone had no effect (lane
7). BSA, bovine serum albumin; +, present; , absent.
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Deliberate overexpression of FKBP52 in established cell lines leads
to a significant increase in AAV-mediated transgene expression.
In
order to examine the effect of the FKBP52 protein on AAV-mediated
transgene expression in vivo, we also generated a eukaryotic expression
plasmid containing the human FKBP52 gene driven by the CMV promoter.
Human HeLa and 293 cells and murine NIH 3T3 cells were stably
transfected with this plasmid, and the WCEs prepared were analyzed to
detect human FKBP52 on Western blots using anti-human FKBP52 antibody
as described in Materials and Methods. The results are shown in Fig.
6. Densitometric scanning of lumigraphs
revealed
2-fold overexpression of the human FKBP52 in HeLa and 293 cells. In NIH 3T3 cells, the level of expression of the human FKBP52
was similar to those in mock-transfected 293 and HeLa cells. WCEs
prepared from each cell type as well as cells stably transfected with
the human FKBP52 expression plasmid were also used in EMSA with the AAV
D(
) probe, and the results are shown in Fig.
7. It is evident that in both NIH 3T3 and
HeLa cells, deliberate overexpression of FKBP52 led to a significant
reduction of tyrosine-phosphorylated FKBP52, the underlying mechanism
of which is unclear. No effect was observed in 293 cells, since the FKBP52 present in these cells is phosphorylated predominantly at serine
or threonine residues.

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FIG. 6.
Western blot analysis for expression of human FKBP52 in
human 293 and HeLa cells and murine NIH 3T3 cells. Mock-transfected
cells (lanes 1, 3, and 5) and cells stably transfected with a human
FKBP52 expression plasmid (lanes 2, 4, and 6) were analyzed using human
anti-FKBP52 antibody as described in Materials and Methods. The arrow
indicates the 52-kDa human FKBP52 protein. +, present; , absent.
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FIG. 7.
Electrophoretic mobility shift assays for the AAV D( )
sequence interaction with FKBP52 in mock-transfected NIH 3T3, 293, and
HeLa cells (lanes 2, 4, and 6) or cells stably transfected with the
human FKBP52 expression plasmid (lanes 3, 5, and 7). These assays were
carried out as described in the legend to Fig. 4. The
tyrosine-phosphorylated form of the FKBP52 protein is denoted by the
arrow, and the serine- or threonine-phosphorylated form is denoted by
the arrowhead. +, present; , absent.
|
|
Since FKBP52, dephosphorylated at tyrosine residues, would be expected
to be less inhibitory to AAV second-strand DNA synthesis,
we wished to
determine whether NIH 3T3 and HeLa cells, stably
transfected with the
FKBP52 expression plasmid, would allow an
increase in AAV-mediated
transgene expression. Mock-transfected
or FKBP52 expression
plasmid-transfected HeLa, 293, and NIH 3T3
cells were either mock
infected or infected with a recombinant
AAV-
lacZ vector
under identical conditions. Transgene expression
was evaluated 48 h postinfection. The results are shown in Fig.
8. It is evident that in both HeLa and
NIH 3T3 cells, with reduced
levels of tyrosine-phosphorylated FKBP52,
the AAV-mediated transduction
efficiency was increased approximately 2- and 10-fold, respectively.
However, since FKBP52 in 293 cells is
present in predominantly
dephosphorylated form (Fig.
7), FKBP52
overexpression did not
significantly increase the AAV transduction
efficiency in these
cells. These studies document that there is a
strong correlation
between the tyrosine-phosphorylation status of the
cellular FKBP52
protein and AAV transduction efficiency.

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|
FIG. 8.
Comparative analyses of AAV-mediated transduction
efficiency in cells overexpressing the FKBP52 protein. Mock-transfected
or FKBP52 expression plasmid-transfected HeLa (A), 293 (B), and NIH 3T3
(C) cells were either mock infected or infected with a recombinant
AAV-lacZ vector under identical conditions. Transgene
expression was evaluated 48 h postinfection as described in
Materials and Methods. These data represent results from experiments
performed in triplicate with the standard error of the mean.
Statistical differences were determined by using an unpaired Student
t test. +, present; , absent.
|
|
 |
DISCUSSION |
Although AAV has gained attention as a useful alternative to the
more commonly used retrovirus- and adenovirus-based vectors for human
gene therapy, recent studies from our laboratory and others have
suggested that there are at least three major obstacles that limit
high-efficiency transduction by AAV vectors in certain cell types.
These include the lack of expression of the cellular receptor and
coreceptor for AAV infection (41, 49, 50), impaired
intracellular trafficking of the virus into the nucleus (13,
14), and the inability of AAV to undergo viral second-strand DNA
synthesis to yield the transcriptionally active double-stranded template (8, 9). For example, it has become abundantly
clear that AAV infection requires the cell surface expression of
heparan sulfate proteoglycan as a receptor for viral binding
(50) and fibroblast growth factor receptor 1 and/or
V
5 integrin as a coreceptor for viral entry (41,
49). Second, endosomal processing has recently been suggested to
lead to efficient intracellular trafficking of AAV into the nucleus
(6, 7). Third, we have documented that a cellular protein,
designated ssD-BP, the identity of which has thus far remained unknown,
plays an important role in viral second-strand DNA synthesis (25,
26, 40, 42).
In the present studies, we purified the ssD-BP and identified it as a
52-kDa cellular protein, FKBP52, that binds the immunosuppressant drug
FK506. The human FKBP52, also known as an immunophilin, is ubiquitous,
is phosphorylated, and localizes predominantly to the nucleus,
properties that are shared with ssD-BP (40-42). Using the
purified recombinant protein, we documented that (i) FKBP52 can be
phosphorylated in vitro at both serine and threonine residues by CK II
and at tyrosine residues by EGFR-PTK; (ii) phosphorylated forms, but
not the unphosphorylated form, of FKBP52 interact efficiently in vitro
with the AAV single-stranded D sequence; (iii) FKBP52 phosphorylated at
tyrosine residues inhibits AAV second-strand DNA synthesis more
efficiently than that phosphorylated at serine or threonine residues,
whereas unphosphorylated FKBP52 has no effect; and (iv) deliberate
overexpression of FKBP52 effectively reduces tyrosine
phosphorylation of the protein, which leads to more efficient
AAV-mediated transgene expression in human and murine established cell
lines in vitro. In view of these data, we have revised our previously
published model of AAV DNA second-strand synthesis and transgene
expression (25, 26), as shown in Fig. 9. In the revised model, cellular FKBP52,
phosphorylated either at tyrosine residues by EGFR-PTK or at serine or
threonine residues (previously assumed to be the unphosphorylated form
of ssD-BP [27]) by an unknown cellular serine or
threonine protein tyrosine kinase, interacts with the D(
) sequence in
the AAV ITR and inhibits viral second-strand DNA synthesis. Coinfection
with adenovirus, expression of adenovirus E4orf6 protein, or treatment
with inhibitors of tyrosine and serine or threonine kinase inhibitors
leads to dephosphorylation of FKBP52, which can no longer bind to the
D(
) sequence, thereby allowing viral second-strand DNA synthesis and, consequently, efficient transgene expression.

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|
FIG. 9.
Revised model for the role of the cellular FKBP52
protein in AAV second-strand DNA synthesis. See the text for details.
Shaded circles represent phosphorylated serine (or threonine) and
tyrosine residues. The broken-lined arrow indicates the viral
second-strand DNA synthesis.
|
|
In our previously published studies with HeLa cells (26),
we did not see any effect of staurosporine, a serine or threonine kinase inhibitor, on AAV-mediated transgene expression. Since FKBP52
present in HeLa cells is phosphorylated predominantly at tyrosine
residues, that was not unexpected. However, since KB cells
contain FKBP52 phosphorylated at both tyrosine and serine or threonine
residues (40), we have examined the effects of tyrphostin
1 and staurosporine on AAV-mediated lacZ transgene expression in KB cells. These results document that treatment with
tyrphostin 1 or staurosporine leads to a significant increase in
AAV-mediated transgene expression in KB cells (data not shown). Thus,
the identification of the putative cellular serine or threonine kinase
which catalyzes phosphorylation of FKBP52 remains a high priority.
In preliminary experiments, we have tentatively identified a cellular
tyrosine phosphatase, designated T-cell protein tyrosine phosphatase
(TC-PTP) (24, 56), which catalyzes dephosphorylation of
FKBP52, since stable transfection of a TC-PTP expression plasmid into
HeLa cells led to a significant increase in AAV-mediated transgene
expression (K. Qing, W. Li, M. Tan, M. C. Yoder, and A. Srivastava,
unpublished data). It is obvious, therefore, that further
characterization of the cellular serine or threonine and tyrosine
phosphatases would be instrumental in achieving optimal transduction by
AAV vectors.
It is also obvious that FKBP52 plays an important role in the host
cell. Indeed, a number of cellular processes have been identified in
which FKBP52 is involved. For example, FKBP52 has been shown to be a
chaperone protein, since it can bind to heat shock protein, HSP90, and
form a complex, suggesting a role of FKBP52 in protein folding and
delivery (5). Interestingly, however, FKBP52 has been
documented to interact with HSP90 only when dephosphorylated at serine
or threonine residues, and this complex has been shown to mediate
cytoplasmic transport of a number of cellular and viral proteins to the
nucleus (37-39). Whether FKBP52 phosphorylated at
tyrosine residues forms a complex with HSP90 remains unknown, and
whether the FKBP52-HSP90 complex is also involved in AAV trafficking to
the nucleus remains to be determined. Our ongoing studies of
site-directed mutagenesis of individual serine, threonine, and tyrosine
residues in FKBP52 and the development of FKBP52 knockout cell lines
and mice will allow us to gain further knowledge of the role of FKBP52,
not only in the host cell, but also in the AAV life cycle in general and AAV-mediated gene transfer in particular. Thus, the elucidation of
these relationships will likely have important implications for the
successful use of AAV vectors in human gene therapy.
 |
ACKNOWLEDGMENTS |
We thank Etienne-Emile Baulieu for his kind gift of the rabbit
FKBP52 cDNA expression plasmid.
This research was supported in part by Public Health Service grants
(HL-53586, HL-58881, and DK-49218; Centers of Excellence in Molecular
Hematology) from the National Institutes of Health and a grant from the
Phi Beta Psi sorority.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Microbiology & Immunology, Indiana University School of Medicine,
Medical Science Building Room 257, 635 Barnhill Dr., Indianapolis, IN 46202-5120. Phone: (317) 274-2194. Fax: (317) 274-4090. E-mail: asrivast{at}iupui.edu.
 |
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Journal of Virology, October 2001, p. 8968-8976, Vol. 75, No. 19
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.19.8968-8976.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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