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Journal of Virology, July 2001, p. 6273-6278, Vol. 75, No. 14
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.14.6273-6278.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Common Antiviral Cytotoxic T-Lymphocyte Epitope for
Diverse Arenaviruses
Michael B. A.
Oldstone,1,*
Hanna
Lewicki,1
Dirk
Homann,1
Christophe
Nguyen,2
Sylvianne
Julien,2 and
Jean
Edouard
Gairin2
Division of Virology, Department of
Neuropharmacology, The Scripps Research Institute, La Jolla, California
92037,1 and Institut de Pharmacologie et
de Biologie Structurale, CNRS, 31400 Toulouse,
France2
Received 24 January 2001/Accepted 8 April 2001
 |
ABSTRACT |
Members of the Arenaviridae family have been
isolated from mammalian hosts in disparate geographic locations,
leading to their grouping as Old World types (i.e., lymphocytic
choriomeningitis virus [LCMV], Lassa fever virus [LFV], Mopeia
virus, and Mobala virus) and New World types (i.e., Junin,
Machupo, Tacaribe, and Sabia viruses) (C. J. Peters,
M. J. Buchmeier, P. E. Rollin, and T. G. Ksiazek, p.
1521-1551, in B. N. Fields, D. M. Knipe, and P. M. Howley [ed.], Fields virology, 3rd ed., 1996;
P. J. Southern, p. 1505-1519, in B. N. Fields, D. M. Knipe, and P. M. Howley [ed.], Fields
virology, 3rd ed., 1996). Several types in both groups
LFV, Junin,
Machupo, and Sabia viruses
cause severe and often lethal human
diseases. By sequence comparison, we noted that eight Old World and New
World arenaviruses share several amino acids with the nucleoprotein
(NP) that consists of amino acids (aa) 118 to 126 (NP 118-126)
(RPQASGVYM) of LCMV that comprise the immunodominant cytotoxic
T-lymphocyte (CTL) epitope for
H-2d mice (32). This
Ld-restricted epitope constituted >97% of the total
bulk CTLs produced in the specific antiviral or clonal responses of
H-2d BALB mice. NP 118-126 of the Old
World arenaviruses LFV, Mopeia virus, and LCMV and the New World
arenavirus Sabia virus bound at high affinity to Ld. The
primary H-2d CTL anti-LCMV response as
well as that of a CTL clone responsive to LCMV NP 118-126 recognized
target cells coated with NP 118-126 peptides derived from LCMV, LFV,
and Mopeia virus but not Sabia virus, indicating that a common
functional NP epitope exists among Old World arenaviruses.
Use of site-specific amino acid exchanges in the NP CTL epitope
among these arenaviruses identified amino acids involved in major
histocompatibility complex binding and CTL recognition.
 |
INTRODUCTION |
The humoral (antibody) and
cellular (T-lymphocyte) responses represent two distinct pathways by
which the immune system recognizes and combats viral infections
(reviewed in reference 30). Antibodies primarily recognize
viruses or viral antigens circulating in the blood and other fluids,
whereas T lymphocytes interact with viral antigens in the form of
processed peptides bound to host cells and presented in a groove
between the two
-helices of the major histocompatibility
complex (MHC) glycoproteins (3).
Cytotoxic T lymphocytes (CTLs), most of which bear the CD8 molecule,
recognize and interact with infected cells that express viral antigen
(peptide) presented by MHC class I molecules. Observations of humans
and mice with genetic or acquired deficiencies in antibody or T-cell production and experimentally manipulated animals clearly show that
control of most acute viral infections is critically dependent on MHC
class I-restricted CD8 CTLs (reviewed in reference 30). However, immune clearance of persistent viral infections, in addition to dependence on CD8 CTLs, also requires the participation of CD4 T
cells (2, 8, 12, 16, 29).
CTL responses to infection with the arenaviruses lymphocytic
choriomeningitis virus (LCMV) and, likely, Lassa fever virus (LFV)
essentially rely on cell-mediated CD8 CTL responses (reviewed in
references 6, 29, 30, and 34). Features of
interactions between arenavirus peptides and MHC class I molecules have
been delineated molecularly and structurally by biochemical
characterization of the naturally presented peptides (10, 11, 13,
19, 32, 33) and analysis of CTLs as viral escape variants
(9, 14, 15, 22). Studies with these and other viruses
whose peptides were isolated by elution from MHC class I molecules led
to the identification of allele-specific anchor residues within the
peptide sequence (reviewed in reference 23). Similarly,
the impact of structural factors at nonanchoring residues in
peptide-MHC interactions has been identified by using single amino acid
mutations of viral gene products (9, 10).
The nucleoprotein (NP) sequence of LCMV consisting of amino acids (aa)
118 to 126 (NP 118-126) (RPQASGVYM) was found to be Ld restricted and to constitute >97% of the
total clonal or total bulk primary CTL responses (32). A
single injection of recombinant vaccinia virus (VV)-LCMV NP vaccine
incorporating this Ld epitope provided
complete protection for H-2d mice later
challenged intracerebrally with an ordinarily lethal dose of virus
(18, 19). Further, study of this CTL epitope indicated
that one-third of mice from nine established haplotypes (H-2d, H-2u,
and H-2q) possessed MHC class I
glycoproteins capable of presenting the LCMV NP 118-126
peptide for recognition and lysis by virus-specific CTLs
(19). This concept was further strengthened when
incorporation of this virus-specific NP CTL epitope into a
recombinant VV vaccine and administration of a single dose protected
mice of these three haplotypes from an ordinarily lethal challenge of
virus. This outcome indicated the presence of a common epitope
among disparate MHC class I types and suggested the possibility of
developing an effective CTL vaccine for outbred populations, such as
humans (31). To further explore this possibility, we
studied the NP CTL epitope (117/118)-126 for its representation
among other arenaviruses. We noted that both the Old World (LVF,
Mopeia) and New World (Machupo, Sabia, Junin, Pichinde, Oliveros, and
Tacaribe) viruses had 22 to 78% homology with the LCMV NP 118-126
epitope. Sequence analysis of the NP (117/118)-126 among the
arenaviruses combined with site-specific amino acid exchanges revealed
the requirement for peptide binding to MHC class I
Ld molecules and the requirement for subsequent
cross-recognition of these MHC-restricted peptides by LCMV-specific
Ld-restricted CD8+ CTLs. Of
the nine arenaviruses studied, the NP 118-126 peptide from four, LCMV,
LFV, Mopeia virus, and Sabia virus, bound at high affinity to
Ld MHC class I molecules. Binding of the Sabia
virus peptide NP 118-126 to Ld indicated that a
Ser (Sabia virus aa 119) would substitute for the known position 2 (P2) MHC anchor residue Pro (aa 119: LCMV, Mopeia virus, LFV)
and that Ala in P3 might serve as an ancillary MHC anchor. The three
Old World arenaviruses, LCMV, LFV, and Mopeia virus, but not the New
World virus Sabia virus, showed functional CTL cross-reactivity when
their peptides were used to coat MHC-matched target cells.
Single-amino-acid exchanges between LCMV and Sabia virus indicated that
an amino acid change of Gly at P5 (aa 122) for a Ser or Ala aborted
cross-recognition by anti-LCMV CD8+ CTLs. Hence,
a recombinant, plasmid or subunit viral vaccine including a common NP
CTL epitope could offer immune protection from diseases caused by
Old World but not New World arenaviruses.
 |
MATERIALS AND METHODS |
Mouse strains, cell lines, and virus stocks.
BALB/WEHI or
BALB/cByJ (H-2d) and C57BL/6
(H-2b) mice were obtained from the
breeding colony at The Scripps Research Institute and used when 6 to 10 weeks of age. BALB/cl 7 (H-2d),
MC57 (H-2b), and human T2 cells
transfected with H-2 Ld
(T2-Ld) were used in CTL and binding experiments.
Cells were grown in RPMI 1640 (BALB/cl 7, MC57) or Iscove's modified
Dulbecco's medium (T2-Ld) containing 8% bovine
serum and L-glutamine as described previously (10, 11, 13-15, 20, 32, 33). Gentamicin (400 µg/ml) was added to Iscove's modified Dulbecco's medium to maintain selection of
T2-Ld cells. The LCMV Armstrong clone 53b (LCMV
ARM) was used at an MOI of 1 to infect cells. The origin, cloning,
sequencing, plaque purification, and quantification of LCMV on Vero
cells, expression of viral NP or glycoprotein (GP), and
their identification with NP- or GP-specific monoclonal antibodies have
been described previously (10, 14, 15, 32). Details
describing the construction and use of recombinant VV expressing
full-length LCMV ARM GP, NP, or NP epitope aa 118 to 127 have been
published (14, 15, 31, 32).
Peptides.
Peptides were synthesized by the solid-phase
method using the N-9-fluorenyl(methylcarbonyl) (Fmoc)
chemistry, purified by high-pressure liquid chromatography on a
RP300-C8 reverse-phase column (Brownlee lab), and identified by fast
atom bombardment or electrospray mass spectrometry (10,
20).
MHC binding studies.
An MHC stabilization assay was
performed. RMAS cells (Db
Kb) transfected with
Ld molecules and P815
(H-2d) were used to measure
Ld stabilization in the presence of increasing
peptide concentrations, using the monoclonal antibody HB27, 28-14-8S
(anti-Db, anti-Ld), Y3
(anti-Kb) or SF1-1.1.1
(anti-Kd) staining followed by flow cytometry
analysis, as previously described (10, 20; M. B. A. Oldstone, J. E. Gairin, H. Mazarguil, F. Laval, V. C. Asensio, I. L. Campbell, S. J. DeArmond, B. Coon, and D. Homann, unpublished data.). The peptides were considered MHC binders
when displaying a peptide concentration giving half of the maximal
stabilization effect (SC50) affinity values of 50 µM or lower.
Computer analysis.
Molecular modeling of the interaction
between H-2 Ld and viral peptides was performed
using Insite (Biosym Technology, San Diego, Calif.). The
calculated binding motif for Ld and
crystallographic studies on this molecule are published (1, 26).
Generation and detection of CTLs.
Primary LCMV-specific CTLs
were generated by priming mice intraperitoneally with
105 PFU of LCMV ARM. Spleens from such mice were
removed 7 days after inoculation, and single-cell suspensions of
spleens (free from erythrocytes) were prepared in complete RPMI 1640 media as described previously (14, 15, 29, 31, 32). These
cells were then tested for their ability to lyse virus-infected or
peptide-coated targets as reported previously (14, 15, 24, 29,
31, 32). The Ld-restricted CTL clone HD-8
has been described, and its specificities have been recorded
(32).
A standard 5- to 6-h 51Cr-release assay
(14, 15, 24, 31, 33) was used to measure CTL activity.
Target cells were infected with LCMV ARM at an MOI of 1, 48 h
before the assay, or with recombinant VV at an MOI of 3, 16 h
before the assay. Peptides at various concentrations were used to coat
uninfected target cells. The percent specific lysis was calculated as
100[(CPM release by CTL
CPM of spontaneous release)/(CPM of
total release
CPM of spontaneous release)].
Intracellular cytokine assays were done on BALB spleen cells obtained 7 days after infection with LCMV ARM. Lymphocytes were
harvested as
described above, restimulated for 5 h in the presence
of the
indicated arenavirus peptides (0.1 µg/ml) plus recombinant
human
interleukin 2 (50 U/ml) and brefeldin A (1 µg/ml), and subsequently
stained for CD8, gamma interferon (IFN-

), and tumor necrosis
factor
alpha (TNF-

) as described previously (
2,
24).
 |
RESULTS AND DISCUSSION |
The Ld MHC CD8+ CTL-restricted
peptide sequence was remarkably similar among diverse
arenaviruses.
The Ld MHC molecule bound
viral peptides via an MHC anchor of proline (P) at P2 and a methionine
(M), phenylalanine (F), leucine (L), or isoleucine (I) at P9 or
P10 according to elution, alignment, and immunochemical studies
(23). Others (9) employing limited single-amino-acid substitution analysis reported that replacing the
authentic P at P2 with an alanine (A) or arginine (R), S at P5 with
asparagine (N), or M at P9 with a lysine (K) or L diminished or
abolished the capacity of NP peptide to increase cell surface Ld expression and to induce
Ld stabilization in L cells
(H-2k) manipulated to express
Ld molecules. In addition, crystallographic
analysis of the Ld MHC molecule suggested that P3
may also act as an auxiliary MHC anchor with P4 and P8 forming contacts
for the CD8+-T-cell receptor (1,
26). With the Ld-restricted LCMV ARM
immunodominant CTL epitope RPQASGVYM (32) used as a
guide, the corresponding NP sequences of several Old World and New
World arenaviruses were obtained. As shown in Table 1, NP 118-126 of the Old World LFVs
Nigeria (G) and Josiah (J) as well as Mopeia virus shared from 6 to 7 aa with the LCMV ARM peptide. These viruses bore homology to the MHC
binding anchor of a P at P2 and an M at P9 but not the suggested P3
auxiliary MHC anchor LCMV ARM (Q), LFV (G and J), and Mopeia (L)
residues. As anticipated, Ld-expressing
cells bound tightly at concentrations of 4 µM for Mopeia virus, 20 µM for LFV (G), and 5 µM for LFV (J) (Table 1; Fig.
1). In contrast, the corresponding
aligned NP sequence from the New World arenaviruses had less homology
to the LCMV prototype, i.e., 2 to 4 aa were shared with the 9 aa
residues of LCMV ARM. Further, as shown in Table 1, none of the New
World arenaviruses, Junin, Machupo, Sabia, Pichinde, Oliveros, or
Tacaribe, had a P in P2 or a Q or L in P3, although Junin, Machupo,
Sabia, and Tacaribe viruses had the correct amino acids to serve as an
MHC anchor in P9. Therefore, it was surprising that Sabia bound well to
the Ld molecules (30 µM [Table 1 and Fig. 1],
and in a separate experiment, 10 µM [Table
2]). Sequence comparison showed that
Machupo virus, a nonbinder (affinity of good binders is less than 50 µM), and Sabia virus, a good binder, shared serine (S) in P2 but
differed with respect to amino acids in P3; Sabia virus had an alanine (A), and Machupo virus had a glycine (G). Further, Sabia virus, like
the Old World viruses, had an arginine (R) in P1, whereas Machupo virus
had a glutamic acid (E) in that position. To evaluate the role of P at
P2 and E at P1 in binding to Ld, we substituted E
for R in LCMV ARM at P1 and R for E in Machupo virus at the same amino
acid residue. Table 2 shows that these substitutions did not change the
high binding efficiency of wild-type (wt) LCMV ARM NP 118-126
(parental sequence) or mutant LCMV ARM NP 118-126 (E 118) to
Ld or reverse the low or absent binding of wt
Machupo NP 117-125 or mutant Machupo NP 117-125 (R 117) to
Ld. From these results, we conclude that amino
acid E in P1 does not interfere with binding to the
Ld molecule if P is at P2. The binding of Sabia
to Ld suggests that an S in P2 with the
appropriate flanking amino acid could serve as an ancillary MHC anchor
for P2.
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TABLE 1.
LCMV NP 118-126 sequence homology among arenaviruses and
their binding affinities to H-2Ld arenavirus
peptidesa
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FIG. 1.
Data for the MHC stabilization assay using target cells
expressing Ld molecules. Tenfold dilutions of various
arenavirus peptides, monoclonal antibody to Ld, and
fluorescence-activated cell sorting were used. LCMV, LFV, Mopeia virus,
and Sabia virus NP peptides aa 117/118 to 126 bind to Ld.
Data were confirmed in two repeated studies. See Materials and Methods
and Table 1 for details.
|
|
Ld-restricted LCMV ARM CD8+ CTLs lyse
target cells coated with related NP peptides from diverse
Arenaviridae.
For the next series of experiments,
we inoculated BALB H-2d mice with LCMV ARM
to generate primary day 7 anti-LCMV ARM CTLs. The lytic capacity of
these CTLs was then tested against 51Cr-labeled
target cells coated with various concentrations of related NP peptides
from Old World and New World arenaviruses. As expected (Table
3), LCMV ARM day 7 CTLs in a
virus-specific MHC-restricted manner killed target cells expressing the
relevant Old World peptides from Mopeia, LFV (G), and LFV (J) viruses. For confirmation, a well-characterized
Ld-restricted CTL clone (HD-8) specific for LCMV
ARM NP 118-126 (32) was used at effector-to-target ratios
of 5:1 and 1:1 (5:1 shown in Table 3). Since these CTLs also lysed
Ld targets coated with peptides from Old World
arenaviruses, CTLs generated specifically to LCMV could cross-react and
kill targets of Old World Arenaviridae. In contrast to these
findings, Sabia virus peptide sequence NP 118-126, which bound
robustly to Ld, was not recognized by LCMV ARM
CTLs (Table 3), indicating a lack of cross-reactivity by LCMV to the
CTL peptide epitope of the New World Sabia virus.
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TABLE 3.
Lysis of H-2d targets coated with arenaviral
NP peptides by BALB day 7 primary LCMV ARM bulk CTLs or by
Ld restricted CTL clone HD-8a
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|
In addition to lysis of infected or peptide-coated target cells, CTLs
exhibit effector activity by release of cytokines, such
as IFN-

or
TNF-

(reviewed in references
7 and
30). To
assay
the efficiency of arenavirus peptides in stimulating cytokine
production by LCMV ARM-specific CD8
+ T cells,
IFN-

- or TNF-

-producing cells were quantitated. As
Fig.
2 demonstrates, of the viruses tested,
only LCMV ARM, Mopeia
virus, and LFV (only data for LFV [J] shown)
peptides specifically
stimulated LCMV-specific
CD8
+ T cells to make the cytokines, but the Sabia
virus peptide was
unable to. In agreement with the extent of lysis by
HD-8 CTLs,
CTL accumulation of IFN-

or TNF-

was enhanced with the
Mopeia
peptide over that with the corresponding LFV peptide. Sequence
comparison suggested that the G in P5 in Sabia virus, compared
to S or
A at that position among Old World arenaviruses, or the
change from V
in P7 in Old World arenaviruses to Y in Sabia virus,
prevented LCMV ARM
CTL recognition. To test for these various
possibilities,
single-amino-acid mutations were made at positions
P4 and P7 and at
some other regions in LCMV ARM- and Sabia
L
d-restricted peptides. As shown in Table
4, while change of V
to Y or vice versa
at P7 failed to alter CTL lysis, the change
at P5 from S to G or vice
versa did allow LCMV ARM CTLs to lyse
L
d targets
coated with Sabia virus mutant peptide. From these data
we conclude
that the amino acid S in P5 is a T-cell-receptor contact
residue that
tolerates an A mutation (see Mopeia virus and LFV
sequences, Table
3),
while a G mutation prevents CTL-mediated
lysis. We then made a mutation
in P3 of Sabia changing the A to
G, the residue in the
non-L
d-binding Machupo virus peptide. The Sabia
virus peptide (G in
P3 and S in P5) was about half as efficient in
preparing the target
cell for lysis by LCMV-specific CTLs as Sabia
virus peptides with
A or Q in P3 and S in P5. These data suggest that
ancillary MHC
binding occurs via A in P3 of Sabia virus.

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FIG. 2.
Intracellular cytokine assay done on lymphocytes
obtained from BALB mice 7 days after infection with LCMV. Lymphocytes
were incubated with various arenavirus NP peptides (see Table 1),
recombinant interleukin-2, and brefeldin A and stained for both surface
CD8 molecules and intracellular IFN- and TNF- by FACS. Only LFV
and Mopeia virus NP peptides consisting of aa 118 to 126 cross-react at
the CD8+-T-cell level with LCMV CD8+ CTLs. Data
displayed are the mean values of triplicate samples, and each bar
represents 1 SD. Data are representative of two assays. See Materials
and Methods and references 2 and 24 for
details.
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TABLE 4.
Substitution of S for G in NP aa 122 of Sabia virus
allows its recognition by Ld-restricted LCMV-specific
day 7 primary CTLs and HD-8 CTL clone
|
|
In conclusion, CTLs generated in
H-2d BALB
mice against LCMV ARM cross-react with NP 118-126 sequences of other
Old World arenaviruses.
These cross-reactive CTLs efficiently lyse both
Mopeia virus and
LFV peptide-coated target cells presented by
L
d MHC molecules and express the antiviral
effector cytokines IFN-
and TNF-

. In contrast, no CTL
cross-reactivity was evident between
Old World and New World
arenaviruses with respect to either lytic
or cytokine activity.
Cumulatively, our results suggest the possibility
of a single
vaccine for Old World arenaviruses and argue against
attempting to use
one vaccine to protect against both Old World
and New World
arenaviruses.
The initial classification of
Arenaviridae into Old World
and New World viruses on the basis of complement-fixing antibody
differences before the age of molecular biology appears more
justified
as sequence information emerges. Further, the
observation of cross-CTL
recognition among the Old World arenaviruses
studied here, but
not with the New World arenaviruses, supports this
classification.
Our data stress two points. First, the CTL commonality
shown here
among Old World arenaviruses may signify that the sharing of
their
epitopes among several human HLA motifs would permit the
design
of a universal vaccine for Old World arenaviruses. Studies to
test this possibility are currently under way utilizing sequences
for
various motif patterns and humanized transgenic mice (
28).
Second, the arenaviruses used here may have originated from
geographically
separate sources and could reflect differences between
their natural
rodent hosts on each continent. Alpha-dystroglycan has
recently
been identified as the receptor for LCMV and LFV
(
4). Interestingly,
recent studies of binding of
arenaviruses to this receptor (S.
Kunz, C. Spiropoulou, and M. B. A. Oldstone, unpublished data)
indicate that the Old World arenaviruses tested (LFV, Mopeia virus,
Mobala virus, and LCMV) all bind with high affinity to this receptor,
while in contrast the majority of New World arenaviruses bind
with an
affinity that is 2 to 3 logs lower. The exception is the
clan
containing the Oliveros and Latino New World arenaviruses,
which bind
at high affinity to alpha-dystroglycan.
Studies on vaccination to control LFV infection in rodents have shown
that GP and NP vaccines are both effective (
5,
17).
However, in subhuman primates, both components of LFV GP (GP1
plus GP2)
were required for a protective vaccine; neither LFV
NP, GP1, nor GP2
alone was effective (
6). However, new studies
in which
vaccination successfully protected nonhuman primates
from Ebola virus
(
27) stressed the need of a uniquely designed
vaccine
protocol to achieve optimal results. Until such approaches
are
undertaken for LFV and until data concerning LFV-specific
T cells
becomes available from human or animal models, the roles
for various
components of the immune response against the viral
GP and/or NP
remains
uncertain.
 |
ACKNOWLEDGMENTS |
This work was supported by USPHS grant AI09484 and NIH training
grant AG00080 and by JDFI Award 3-1999-629 to D.H.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Division of
Virology, Department of Neuropharmacology, The Scripps Research
Institute, 10550 North Torrey Pines Rd., La Jolla, CA 92037. Phone:
(858) 784-8054. Fax: (858) 784-9981. E-mail:
mbaobo{at}scripps.edu.
Publication no. 13460-NP from the Division of Virology, Department
of Neuropharmacology, The Scripps Research Institute, La Jolla, Calif.
 |
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Journal of Virology, July 2001, p. 6273-6278, Vol. 75, No. 14
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.14.6273-6278.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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