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Journal of Virology, June 2001, p. 5663-5671, Vol. 75, No. 12
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.12.5663-5671.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Modulation of Transporter Associated with Antigen
Processing (TAP)-Mediated Peptide Import into the Endoplasmic Reticulum
by Flavivirus Infection
Frank
Momburg,1
Arno
Müllbacher,2 and
Mario
Lobigs2,*
Division of Immunology and Cell Biology, John
Curtin School of Medical Research, The Australian National University,
Canberra, Australian Capital Territory 2601, Australia,2 and Department of Molecular
Immunology, German Cancer Research Center (DKFZ), 69120 Heidelberg,
Germany1
Received 1 February 2001/Accepted 29 March 2001
 |
ABSTRACT |
In contrast to many other viruses that escape the cellular immune
response by downregulating major histocompatibility complex (MHC) class
I molecules, flavivirus infection can upregulate their cell surface
expression. Previously we have presented evidence that during
flavivirus infection, peptide supply to the endoplasmic reticulum is
increased (A. Müllbacher and M. Lobigs, Immunity 3:207-214,
1995). Here we show that during the early phase of infection with
different flaviviruses, the transport activity of the peptide
transporter associated with antigen processing (TAP) is augmented by up
to 50%. TAP expression is unaltered during infection, and viral but
not host macromolecular synthesis is required for enhanced peptide
transport. This study is the first demonstration of transient
enhancement of TAP-dependent peptide import into the lumen of the
endoplasmic reticulum as a consequence of a viral infection. We suggest
that the increased supply of peptides for assembly with MHC class I
molecules in flavivirus-infected cells accounts for the upregulation of
MHC class I cell surface expression with the biological consequence of
viral evasion of natural killer cell recognition.
 |
INTRODUCTION |
Many viruses have evolved mechanisms
for the evasion of the immune responses of their hosts. These immune
escape strategies frequently block the function of the major
histocompatibility complex (MHC) class I antigen presentation pathway
and hence prevent the recognition and killing of virus-infected cells
by cytotoxic T (Tc) lymphocytes (for reviews, see references 33
and 47). Escape from Tc cell surveillance is of particular
importance for viruses which can establish persistent or latent
infections. Given that Tc lymphocytes are the primary cellular
mediators for the control and clearance of viral infections (reviewed
in reference 50), it is paradoxical that infection with
some viruses (flaviviruses, coronaviruses, and paramyxoviruses) elicits
an increase in the cell surface expression of MHC class I molecules,
the recognition elements for Tc cells (8, 10, 16, 22, 43).
This phenomenon has been investigated in some detail for the
flaviviruses, a family of enveloped, plus-strand RNA viruses which are
mostly transmitted by arthropods (mosquitoes or ticks) to a vertebrate
host (reviewed in reference 27). Many flaviviruses can
cause disease in humans, ranging from nondescript febrile illness to
encephalitis and hemorrhagic fever, with yellow fever virus, dengue
virus, and Japanese encephalitis virus being of particular medical
significance. Global warming may lead to extension of the range of
arthropod vectors, and this plus transport of infected vertebrate hosts
may cause increased human infection and disease, as in the recent
emergence of West Nile virus (WNV) in New York (1) and
Japanese encephalitis virus in Australia (7).
The upregulation of MHC class I expression at the surface of
flavivirus-infected cells has been documented for different cell types
(fibroblasts, trophoblasts, myoblasts, astrocytes, macrophages, B
cells, and endothelial cells) of different species origins (human, mouse, and hamster) and is induced by flaviviruses from different serocomplexes (8, 19). It is not mediated by interferons or the increased biosynthesis of MHC class I molecules (10, 11,
16, 30). Furthermore, flavivirus infection can also lead to an
increase of cell surface MHC class I expression in the mouse
lymphoblastoid cell line, RMA-S, which is deficient in MHC class
I-restricted antigen presentation due to a mutation in the transporter
associated with antigen processing (TAP). TAP is an essential accessory
molecule in the MHC class I pathway and functions in the transport of
peptides from the cytosol into the lumen of the endoplasmic reticulum
(ER) for loading of MHC class I glycoproteins (for reviews, see
references 3 and 23). In RMA-S cells, which fail to
express the TAP2 subunit of the peptide transporter (35,
46), flavivirus-induced upregulation of endogenous and
transfected class I molecules takes place (30). A similar
flavivirus-mediated effect was noted in cell lines where the endogenous
MHC class I expression is undetectable or very low as a consequence of
its developmental downregulation (Syrian hamster BHK and NIL-2 cells
[20], mouse embryo fibroblasts, and trophoblasts
[10, 11]). The increase of MHC class I molecules induced
by flavivirus infection correlates with increased MHC class
I-restricted antigen presentation, revealing the functionality of these
molecules. This conclusion is based on the findings of augmented lysis
of flavivirus-infected cells by alloreactive and virus-specific
(influenza or vaccinia virus [VV] when used in double infections with
a flavivirus) Tc cells and the increased recovery of peptides by acid
extraction from the cell surface of flavivirus-infected cells in
comparison to results with uninfected cells (30).
Collectively, these results led to the proposition that flavivirus
infection upregulates the cell surface expression of MHC class I by a
mechanism which involves the increase in the supply of peptides to the
ER. This interpretation is consistent with a model which predicts that
the rate of peptide import into the ER mediated by TAP, but not the
rate of biosynthesis of MHC class I molecules, dominantly controls cell
surface expression of MHC class I (24, 34, 35).
The mechanism of how flavivirus infection increases the peptide supply
into the ER has not been elucidated. The finding of partial repair of
antigen presentation in RMA-S cells, which are nominally devoid of
functional TAP, suggested that the flavivirus-induced effect was TAP
independent (30). However, we obtained conflicting results
with human T2 cells, in which both TAP subunits are deleted (40). In this cell line, flavivirus infection did not
upregulate the cell surface expression of MHC class I and did not
induce antigen presentation for Tc cell recognition. Here we have
investigated the effect of flavivirus infection on peptide
translocation into the ER and demonstrate for the first time an
enhancement of TAP-dependent peptide import into the lumen of the ER as
a consequence of a viral infection.
 |
MATERIALS AND METHODS |
Cells.
The human lymphoblastoid cell line LCL 721, its
TAP-deficient derivative LCL 721.174, and the TAP-deficient human
lymphoblastoid T2 cells were grown in RPMI 1640 medium supplemented
with 10% fetal calf serum (RPMI-FCS). T2 cells stably transfected with H-2Kb genomic DNA (T2.Kb)
(49), rat Tap1 plus
Tap2a cDNAs (T2.rTAP1/2a)
(24), or rat Tap1 plus
Tap2u cDNAs (T2.rTAP1/2u)
(26) were grown in RPMI-FCS supplemented with 0.8 mg of
Geneticin (Gibco-BRL)/ml. L929 fibroblasts, natural killer (NK)
cell-sensitive Yac-1 cells, HeLa cells, HeLa-S3 cells, and HeLa-S3
cells stably transfected with the herpes viral TAP inhibitor protein
ICP47 (HeLa-S3.ICP47) were grown in Eagle's minimal essential medium supplemented with 5% FCS plus 0.8 mg of Geneticin/ml for the
transfectant. HeLa-S3.ICP47 cells were a kind gift of H. Hengel,
Berlin, Germany, and S. Kohlstädt, Heidelberg, Germany.
Viruses.
Working stocks of the flaviviruses WNV (strain
Sarafed), dengue-2 virus (Den-2) (strain New Guinea C), Murray Valley
encephalitis virus (MVE) (strain MVE-1-51), and the alphavirus Semliki
Forest virus (SFV) were prepared from suckling mouse brain and titrated by plaque formation on Vero cell monolayers. Virus stocks were diluted
in Hanks' balanced salt solution containing 20 mM HEPES (pH 8.0) plus
0.1% bovine serum albumin (BSA) to obtain the required multiplicity of
infection (MOI). VV recombinants encoding human Tap1
(VV-hTAP1), human Tap2 (VV-hTAP2) or both human
Tap genes (VV-hTAP1+2) (37) were kindly
provided by J. Bennink and J. Yewdell, National Institutes of Health,
Bethesda, Md. VV-Kk encodes the
H-2Kk gene and was a gift from B. Arnold, DKFZ,
Heidelberg, Germany. VV-TK
is a control virus with the
thymidine kinase gene inactivated by homologous recombination. Virus
stocks were crude lysates of VV-infected CV1 cells (18).
Chromium release assay.
Secondary H-2Kb- and
H-2Kk-restricted VV-immune Tc cells were generated from
splenocytes from VV-infected C57BL/6 and CBA/H mice, respectively, as
described previously (28). Target cell infection and
51Cr labeling were as shown in the figure legends. Target
cells (2 × 104) were incubated with effector cells at
various effector/target ratios for 6 h, and the percent specific
lysis was determined as described previously (28). The
standard error of the mean (SEM) was always <2%, and spontaneous
release was <20%. The NK cell assay, including phenotyping of
effector cells, was performed as has been described (29).
Peptide transport assays.
In vitro translocation assays
using radioiodinated peptides and streptolysin O-permeabilized cells
were performed essentially as described previously (12,
25). Briefly, flavivirus- or mock-infected cells (see below)
were washed once with translocation buffer (TB) (130 mM KCl, 10 mM
NaCl, 1 mM CaCl2, 2 mM EGTA, 2 mM MgCl2, 5 mM
HEPES [pH 7.3]) and then permeabilized in streptolysin O (SLO)
solution (50 µl/2.5 × 106 cells; 2.5 IU/ml in TB;
Murex Diagnostics, Dartford, United Kingdom) for 20 min at 37°C. The
cytosol was removed by 3 washes with 1 ml of TB. Permeabilized cells
were resuspended in TB, and 2.5 to 5 µl of radioiodinated peptide in
phosphate-buffered saline (PBS) (50 to 100 pmol; specific activity, 20 to 50 cpm/fmol) and 10 µl of ATP (100 mM) were added to a final
volume of 100 µl. For a control, 10 µl of EDTA (100 mM) was used
instead of ATP. The mixture was incubated for 20 min at 37°C, and
peptide translocation was stopped by addition of 1 ml of ice-cold lysis
buffer (1% NP-40 in 150 mM NaCl, 5 mM MgCl2, 50 mM
Tris-HCl [pH 7.3]). Nuclei were removed by centrifugation at
10,000 × g, and the glycosylated peptide fraction was
recovered with 30 µl of concanavalin A (ConA)-Sepharose (Pharmacia
LKB, Uppsala, Sweden) slurry by overnight rotation. The ConA-Sepharose
beads were washed four times with 1 ml of lysis buffer, and the
radioactivity was quantitated by
-counting. ConA-bound radioactivity
is presented as a percentage of the input radioactivity.
For the peptide import-export assay with nonglycosylatable peptide,
flavivirus- or mock-infected T2.rTAP1/2a cells were
permeabilized with SLO as described above. Permeabilized cells were
washed twice in TB-0.1% BSA. Per sample of the translocation kinetics
assay, a mixture of 2 × 106 cells in 10 µl of
TB-0.1% BSA, 2 µl of the radioiodinated peptide RRYQKSTEL (20 µM
stock in PBS), 5 µl of ATP (100 mM), or 5 µl of EDTA (50 mM) for
the control in a final volume of 50 µl of TB-0.1% BSA was incubated
for 0.5 to 16 min at 37°C. The translocation reaction was stopped by
pipetting a 50-µl aliquot into 1 ml of ice-cold TB-0.1% BSA. The
cells were pelleted for 10 min at 15,000 × g in the
cold, the supernatant was carefully aspirated, and the cell-associated
radioactivity was determined by
-counting.
For flavivirus infection, cells were suspended at 0.5 × 10
7 to 1 × 10
7 cells/ml in Hanks'
balanced salt solution containing 20 mM HEPES
(pH 8.0) and 0.1% BSA in
sterile 10- or 50-ml tubes, virus was
added to obtain the required MOI,
and tubes were left at room
temperature for 30 min followed by
incubation at 37°C in a CO
2 incubator for 30 min. Medium
was added to the infected or mock-treated
cells to give a cell density
of ~10
6 cells/ml for suspension cultures or 2 × 10
5 cells/ml for adherent cells, and cells were transferred
to tissue
culture flasks and incubated in a CO
2 incubator
for time periods
as indicated in the figure legends. For experiments
shown in Fig.
4 and
5, infected and uninfected cells were maintained in
RPM1
medium containing 1% BSA instead of FCS to prevent a differential
in cell divisions between infected and uninfected cells
(
39).
Adherent cells were recovered with trypsin from the
culture flasks
before use in the transport experiments. Cells were
washed twice
with PBS and counted to obtain equal cell numbers for use
in transport
assays. For treatment of cells with cycloheximide (CHX)
(Sigma-Aldrich,
Castle Hill, New South Wales, Australia) or actinomycin
D (actD)
(Sigma-Aldrich), the inhibitors were added at concentrations
of
10 and 5 µg/ml, respectively, to the culture media after virus
adsorption.
Immunoprecipitations.
For comparative immunoprecipitation of
molecules of the MHC class I pathway and WNV antigens, LCL 721 cells
(2 × 107) were infected with WNV at a multiplicity of
15 PFU/cell or left uninfected. The duration of infection was 16 or 24 h including the labeling interval. Metabolic labeling was for 15 h
with 35S-Pro-Mix cell labeling mixture (50 µCi/ml;
Amersham Life Science, England) in 15 ml of Eagle's minimal essential
medium containing one-fifth of the normal concentration of methionine
and cysteine and supplemented with 1% FCS. This was followed by a
further 1-h labeling interval in which cells were suspended in 1 ml of
methionine- and cysteine-free medium containing 200 µCi of
35S-Pro-Mix cell labeling mixture. After the labeling
period, cells were washed twice with PBS, cell pellets were lysed in 1 ml of NP-40 lysis buffer, and lysates were precleared as described
previously (41). For overexpression of TAP1 and TAP2, CV1
cells (2 × 106) were infected with VV-hTAP1,
VV-hTAP2, or the control, VV-TK
, at a multiplicity of 10 PFU/cell. At 3 h postinfection the cells were starved for 0.5 h and metabolically labeled for 2.5 h, and lysates were prepared
and precleared as described previously (41). Immunoprecipitation of TAP1 and TAP2 was carried out with rabbit antisera raised against peptides 1p3 and 2p3 (31),
respectively, MHC class I was immunoprecipitated with an anti-HLA class
I heavy chain antibody, and WNV-encoded polypeptides were
immunoprecipitated with anti-WNV hyperimmune ascitic fluid.
Immunoprecipitation, electrophoresis, and fluorography were performed
as described previously (41).
 |
RESULTS |
WNV infection of TAP-deficient T2 cells does not repair antigen
presentation via MHC class I.
We have have previously shown that
infection of the mouse B lymphoma cell line, RMA-S, with different
flaviviruses upregulates the cell surface expression of MHC class I and
recognition by virus-specific Tc cells despite a deficiency in TAP
function due to the lack of expression of TAP2 (30).
However, when similar experiments were performed in human T2 cells, in
which both TAP subunits are deleted, no flavivirus-mediated
upregulation of cell surface expression of HLA-A2 or -B5 was apparent
by flow-cytometric analysis (data not shown). Also, Tc cell lysis by
VV-immune, H-2Kk-restricted effectors could not be induced
by double infection of T2 cells with VV recombinant for
H-2Kk plus WNV (Fig. 1B). The
same effectors efficiently killed T2.rTAP1/2a transfectants
when infected with VV-Kk. A threefold upregulation of lysis
of T2.rTAP1/2a cells was noted following double infection
with VV-Kk and WNV. Infection of Kb-transfected
T2 cells with WNV also failed to induce Kb-restricted
presentation of viral Tc cell determinants (Fig. 1A). VV-immune
Kb-restricted effectors efficiently lysed T2.Kb
cells infected with a recombinant VV encoding human TAP1 and TAP2
(VV-hTAP1+2). However, T2.Kb target cells infected with WNV
for 24 h followed by superinfection with VV did not show increased
susceptibility to killing by VV-immune effectors in comparison to
targets infected only with the control virus, VV-TK
(Fig.
1A). The permissiveness of T2 cells to infection with WNV was verified
by flow cytometry following internal staining of infected cells with a
WNV-immune serum (data not shown) and expression of WNV-specific
proteins detected by immunoprecipitation (see below). This result
suggests that in contrast to the case with RMA-S cells, the complete
TAP deficiency in T2 cells prevents flavivirus-mediated upregulation of
MHC class I-restricted antigen presentation.

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FIG. 1.
Effect of WNV infection on Tc cell recognition of
TAP-deficient and TAP-transfected T2 cells. (A) T2 target cells stably
transfected with H-2Kb (T2.Kb) were infected
with VV-TK or VV-hTAP1+2 for 16 h or infected with
WNV for 24 h and superinfected with VV-TK for
16 h. Target cells were labeled with 51Cr for 1 h
followed by incubation with C57BL/6 anti-VV effectors for 6 h. (B)
T2 and T2.rTAP1/2a cells were labeled with 51Cr
for 1 h followed by infection with VV-Kk (MOI, ~10)
or WNV (MOI, ~25) or double infection with VV-Kk (MOI,
~10) and WNV (MOI, ~25) for 16 h. The target cells were
incubated with CBA/H anti-VV effectors in a 4-h 51Cr
release assay. Each time point constitutes the mean of the percent
specific lysis of three separate wells. The SEM was always <2%.
Representative data from two experiments are shown. E:T,
effector/target.
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Upregulation of in vitro peptide transport in flavivirus-infected
cells.
To investigate the effect of flavivirus infection on the
rate of peptide transport into the lumen of the ER directly, we
employed an in vitro peptide transport assay (26).
Infected or uninfected cells were permeabilized with SLO and incubated
with radiolabeled peptides which contain an N glycosylation motif.
Peptides translocated into the ER are modified by carbohydrate
addition, allowing their recovery with ConA-Sepharose after cell lysis.
Figure 2A demonstrates that the transport
of two peptides (#64 and #968) is significantly increased in the human
carcinoma cell line HeLa infected with WNV in comparison to results
with uninfected cells. Infection for 12 h increased peptide
transport by 40 to 60%. Interestingly, when the period of infection
was extended to 24 h, a 2.5-fold reduction of peptide transport
was noticed.

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FIG. 2.
Dose and time dependence of flavivirus-induced
modulation of in vitro peptide transport in human fibroblast and
lymphoblastoid cells. (A) HeLa cells were infected with WNV (MOI, ~5)
for 12 or 24 h or left uninfected. The cells were permeabilized
with SLO and incubated with radioiodinated peptide #64
(RYWANATRSL) or peptide #968 (TNKTRIDGQY) in a
20-min transport assay in the presence of ATP. Glycosylated peptides
were recovered from cell lysates with ConA-Sepharose, and the
radioactivity was counted. Transport in the absence of ATP gave <1,000
counts. (B) T2.rTAP1/2a cells were infected with Den-2
(MOI, ~10) or MVE (MOI, ~25) for 17 and 15.5 h, respectively, or
left uninfected, and peptide transport was measured as described above.
Means of two samples ± the SEM are presented. To test the dose
dependence of flavivirus-mediated modulation of in vitro peptide
transport, HeLa (C) and LCL 721 (D) cells were infected with WNV for 12 and 16 h, respectively, at the MOI indicated or left uninfected.
Radiolabeled peptides #63 (RYWANATRSI) and #968
(TNKTRIDGQY) were tested in a 20-min transport assay. Means
for two samples ± SEM are presented for the transport in HeLa
cells.
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|
The virus-mediated effect of augmented peptide import into the ER was
also observed for other flaviviruses. Figure
2B shows
that Den-2 or MVE
infection of T2.rTAP1/2
a cells for 17 or 15.5 h,
respectively, gave ~20% increased
transport.
Flavivirus-mediated upregulation of in vitro peptide transport is
dose dependent.
To analyze whether the early stimulation and late
inhibition of peptide transport found during the course of WNV
infection was due to changes in host cellular pathways resulting from
virus replication, the effect of the infectious dose on peptide
transport was tested. The dose dependence of the virus inoculum on
modulation of in vitro peptide translocation in HeLa cells and human B
cells (LCL 721) is demonstrated in Fig. 2C and D. In HeLa cells a low MOI with WNV (1 to 5 PFU/cell) for 12 h increased, whereas higher doses reduced, peptide transport in comparison to that in uninfected cells (Fig. 2C). Peptide transport was also upregulated in LCL 721 cells when they were infected with WNV at a MOI of 5 to 25 PFU/cell for
16 h (16 to 29% increase for peptides #63 and #968, respectively;
Fig. 2D). On the other hand, peptide transport was impaired when the
virus dose was further increased. The results shown in Fig. 2 are
consistent with a transient virus-induced intracellular process during
the early phase of flavivirus replication which impacts the supply of
peptides from the cytosol into the lumen of the ER. The events appear
to take place at the end of the latent period or the early productive
phase of virus replication (45), the duration of which
inversely correlates with the virus dose used for infection.
Flavivirus-induced upregulation of peptide transport into the ER is
TAP dependent.
TAP-mediated peptide translocation across the ER
membrane in permeabilized cells requires the presence of ATP (for a
review, see reference 23). A similar dependence on ATP was
also apparent in flavivirus-infected cells. Omission of ATP or addition
of EDTA (Fig. 3A) in transport assays
resulted in a 100- to 1,000-fold reduction in glycosylated peptides
recovered in both infected and uninfected cells. Capture of divalent
cations by EDTA completely abrogates the ATP-hydrolyzing function of
TAP (12, 37). Flavivirus infection was never found to
augment peptide transport significantly above this background level. It
also failed to induce in vitro peptide transport in TAP-deficient LCL
721.174 (Fig. 3B) and T2 cells (data not shown). In both cell lines,
infection with WNV at a wide range of multiplicities (1 to 100 PFU/cell) did not elevate peptide transport above background levels
seen in the absence of ATP. Finally, to test the requirement for a
functionally active TAP in flavivirus-induced upregulation of peptide
transport into the ER, which was already suggested by the complete lack of in vitro peptide translocation in infected cells when ATP was omitted, we used HeLa cells transfected with cDNA for the herpes simplex viral TAP inhibitor protein, ICP47. ICP47 is a cytosolic protein which functions as a strong competitive inhibitor of peptide binding by human TAP and which is able to destabilize the human TAP1-TAP2 heterodimer (reviewed in references 33 and 47). WNV infection did not overcome the ICP47-mediated inhibition of peptide
import into the ER, and transport levels in infected or uninfected
HeLa-S3.ICP47 cells were not above background transport levels in the
absence of ATP. As expected, WNV infection resulted in an upregulation
of peptide transport in the parental HeLa-S3 cells (Fig. 3C).

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FIG. 3.
WNV-mediated upregulation of in vitro peptide transport
requires a functionally active peptide transporter. (A) Transport of
radioiodinated peptide #968 in HeLa cells infected with WNV (MOI,
~0.2) for 12 h or left uninfected in the presence of 10 mM ATP
or 10 mM EDTA. Transport was for 20 min, glycosylated peptides were
recovered, and radioactivity was counted. Means of two samples ± the SEM are presented. (B) Transport of peptides #63 and #968 in
TAP-deficient LCL 721.174 cells infected with WNV for 16 h at the
MOI shown or left uninfected. Radioactivity recovered following the
20-min transport assay was <1.5% of that recovered when
TAP-expressing LCL 721 cells were used (see Fig. 2). (C) Transport of
radiolabeled peptide #63 in HeLa-S3 and HeLa-S3.ICP47 cells infected
with WNV (MOI, ~2) for 16 h. Means for two samples ± the
SEM are presented.
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Flavivirus-induced modulation of peptide transport does not alter
the substrate selectivity of TAP.
From antigen presentation
studies and in vitro peptide transport assays, it is apparent that TAP
has a broad substrate specificity (23). Only the
C-terminal peptide residue exerts a pronounced influence on in vitro
peptide transport rates. To investigate whether the flaviviral effect
on peptide import into the ER also alters the substrate specificity of
TAP, peptides with the sequence RYWANATRSX (R10X, where the
C-terminal residue X was one of 10 amino acids) were tested in
transport assays using flavivirus-infected and uninfected cells. The
results of two experiments with LCL 721 cells are compiled in Fig.
4A. The transport pattern in the uninfected cells shows the nonselective transport phenotype of human
TAP, which accommodates peptides with hydrophobic, small polar, or
charged side chains at the C-terminal amino acid (26). Flavivirus infection upregulates the transport of all peptides independently of the nature of the C-terminal residue. Transport rates
were increased by 30 to 50% (peptides R10G, R10S, R10T, R10P, R10Y,
and R10F; experiment 1) and 10 to 20% (peptides R10I, R10N, R10E, and
R10K; experiment 2).

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FIG. 4.
Effect of WNV infection on transport of peptides
differing in their C-terminal amino acid. LCL 721 cells were infected
with WNV (MOI, ~5 to 10) for 16 h or left uninfected,
permeabilized, and used in a 20-min transport assay with glycosylated
peptides of the RYWANATRSX series, where X is one of 10 amino acids shown. Means for two samples ± the SEM are
presented.
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The allelic rat TAP1/2
u (rTAP1/2
u) peptide
transporter has a characteristically restrictive peptide transport
phenotype with
respect to the C-terminal amino acid of the peptide
substrate
(
26). As expected, T2 cells transfected with
rTAP1/2
u efficiently transported peptides of the RYWANATRSX
series when
the C-terminal amino acid contained a hydrophobic or
aromatic
side chain but not peptides with charged or small, polar side
chains at the C-terminal residue (Fig.
4B). WNV infection did
not alter
this transport pattern but increased the rate of transport
of those
peptides which are efficient substrates for rTAP1/2
u.
Effect of flavivirus infection on peptide export from the ER.
Translocation assays using flavivirus-infected cells had so far been
performed with glycosylatable model peptides. To rule out the
possibility that virus-induced alterations of the glycosylation machinery rather than increased peptide transport rates resulted in the
increased recovery of glycopeptide, we carried out translocation assays
with nonglycosylatable peptides. We have shown recently that such
peptides only transiently accumulate in the ER before they are released
through the Sec61p channel (12). Therefore, it was
important to investigate whether flavivirus interferes with the ER
export of nonglycosylated peptides.
T2.TAP1/2
a cells were infected with WNV for 15 h,
semipermeabilized with SLO, and incubated with the radioiodinated
peptide
RRYQKSTEL in the presence of ATP. The translocation reaction
was
stopped by rapid cooling in excess ice-cold buffer, and the
cell-associated
radioactivity was determined. Figure
5A shows the typical biphasic
retention
of nonglycosylatable peptide with a short phase of net
accumulation
followed by a phase of net peptide release. WNV enhanced
the initial
accumulation of peptide RRYQKSTEL in T2.TAP1/2
a cells by
22%. The kinetics of the export phase was not significantly
altered in
WNV-infected cells compared with results for mock-infected
cells. We
conclude that the flavivirus-induced upregulation of
peptide transport
that is observed with various glycosylatable
peptides is also seen with
a nonglycosylatable peptide.

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FIG. 5.
Kinetics of peptide accumulation and requirement of
viral protein synthesis for WNV-induced upregulation of peptide
transport. (A) The nonglycosylatable peptide RRYQKSTEL was
translocated in the presence of ATP for the indicated periods. After
the reaction was stopped by rapid cooling, the cell-associated
radioactivity was -counted. For control of unspecific peptide
binding, the reaction was carried out in the presence of EDTA, which
inhibits TAP-mediated peptide translocation. (B) LCL 721 cells were
infected with WNV (MOI, ~15) for 15.5 h or left uninfected.
Following virus adsorption, the cells were maintained in medium
containing CHX (10 µg/ml) or actD (5 µg/ml). Permeabilized cells
were incubated with radioiodinated peptide #968 (TNKTRIDGQY)
in the presence of ATP in a 20-min transport assay. Means of two
samples ± the SEM are shown. Representative data from three
experiments are shown.
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Requirement of flaviviral but not host cellular macromolecular
synthesis for upregulation of in vitro peptide transport.
To
investigate whether viral and host macromolecular synthesis is required
for the induction of enhanced peptide transport early during flavivirus
infection, CHX and actinomycin D (actD), inhibitors of protein and
DNA-dependent RNA synthesis, respectively, were added to uninfected and
WNV-infected LCL 721 cells used in an in vitro peptide transport assay
(Fig. 5B). Treatment with CHX did not significantly reduce peptide
transport in the uninfected cells compared to results with untreated
cells but inhibited flavivirus-mediated upregulation of transport. The
addition of actD to uninfected cells resulted in a reduction (~10%)
of peptide transport relative to that in CHX-treated and untreated
cells. WNV infection gave a relative increase (23%) of peptide
transport in the actD-treated cells. Given that viral RNA synthesis,
which uses the virally encoded RNA-dependent RNA polymerase, is not
significantly inhibited at the concentration of actD used, the
inhibitor studies show that viral but not host protein synthesis is
needed for augmented peptide transport in flavivirus-infected cells.
Effect of flavivirus replication on the expression TAP1, TAP2, and
other molecules of the MHC class I pathway.
The upregulation of in
vitro peptide transport shown here and the demonstration of increased
MHC class I cell surface expression and MHC class I-restricted antigen
presentation in flavivirus-infected cells could be the result of
augmented expression of molecules of the MHC class I pathway akin to
the effects of gamma interferon (44). This was
investigated by radioimmunoprecipitation. To this end, LCL 721 cells
were left uninfected or were infected with WNV for 16 or 24 h and
metabolically labeled. Using antisera against TAP1 or TAP2, both
proteins could be detected in the cell lysates; their identity was
confirmed by comigration with TAP1- or TAP2-specific bands precipitated
from lysates of cells infected with VV recombinants (VV-hTAP1,
VV-hTAP2) for overexpression of the human peptide transporter subunits
(Fig. 6A and B). These bands were not
seen in lysates from cells infected with control VV-TK
virus. No difference in the intensity of bands corresponding to TAP1 or
TAP2 in WNV-infected LCL 721 cells compared to that of those for
uninfected cells was noted. Likewise, there was no apparent difference
in the expression of the MHC class I heavy chain in WNV-infected LCL
721 cells compared to results with uninfected LCL 721 cells (Fig. 6C).
Productive infection of the cells with WNV was confirmed by
immunoprecipitation of the virus-specific NS5 protein from infected but
not uninfected cells (Fig. 6D). The intensity of the NS5-specific band
increased with the longer infection time. Unaltered steady-state levels
of TAP1 proteins and of class I heavy chains after 16 or 24 h of
WNV infection were also apparent when cell lysates were analyzed by a
Western blot (data not shown).

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|
FIG. 6.
Effect of WNV infection on the biosynthesis of TAP1,
TAP2, and MHC class I molecules. LCL 721 cells were infected with WNV
(MOI, ~15) or left uninfected. The duration of infection was for 16 or 24 h and included a metabolic labeling interval (see Materials
and Methods). Metabolic labeling of infected and uninfected cells was
for a period of 16 h and was followed by detergent lysis and
immunoprecipitation with antisera against TAP1 (A), TAP2 (B), the MHC
class I heavy chain (C), or WNV (D). VV infections of CV1 cells (MOI,
~10) were for 3 h followed by metabolic labeling for 2.5 h,
detergent lysis, and immunoprecipitation with antisera against TAP1 (A)
or TAP2 (B). Proteins were analyzed by sodium dodecyl sulfate-10%
polyacrylamide gel electrophoresis. Bands corresponding to TAP1, TAP2,
the MHC class I heavy chain (HC), and the WNV nonstructural protein NS5
are labeled on the left, and masses (in kilodaltons) of marker proteins
are shown on the right of the autoradiogram.
|
|
Effect of WNV infection on induction of NK cells, in vivo, and NK
cell-mediated cytotoxicity, in vitro.
NK cell activity is
controlled by expression of inhibitory receptors interacting with self
MHC class I molecules (for a review, see reference 13). To
investigate if the increase in MHC class I expression after flavivirus
infection has biological consequences for NK cell recognition, we
tested WNV-infected and uninfected L929 cells and the classical NK
target cell line, Yac-1, for lysis by splenic NK cells from
naïve, WNV-immune, and SFV-immune CBA/H mice. The splenocytes
were harvested 2 days after immunization. Infection with the alphavirus
SFV was employed as a control for a strong virus-induced NK cell
response (29). In addition, effector splenocytes were
phenotyped by treatment with anti-Thy1, anti-CD8, and anti-asialo GM1
antibodies plus complement (C') prior to 51Cr release
assays. Figure 7 shows the results of one
such experiment. All splenic effector cells had NK cell activity, as
shown by their ability to lyse the NK-sensitive target cell Yac-1
(bottom panels). Lytic activity was abrogated by treatment with
anti-asialo GM1 and was partially sensitive to anti-Thy-1 treatment,
but effectors were insensitive to treatment with antibodies to CD8, the
classical Tc cell marker. Splenocytes from SFV-immunized mice had the
greatest lytic activity, whereas splenocytes from WNV-immunized mice
had lytic activity that was only marginally increased over that of control splenocytes. The important observation was, however, that L929
target cells infected with WNV for 24 h were at least three- to
fivefold less sensitive to NK cell lysis than were mock-infected targets. The reverse is true for lysis by alloreactive Tc cells (19).

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|
FIG. 7.
NK cell lysis of target cells infected with WNV.
Splenocytes taken from naïve CBA/H mice or at 2 days after
intraperitoneal infection of mice with 106 PFU of WNV or
107 PFU of SFV were treated with complement (C') only
( ), anti-Thy-1 plus C' ( ), anti-CD8 plus C' ( ), or anti-asialo
GM1 plus C' ( ). Aliquots of effectors were adjusted to volumes of C'
control concentrations to give an effector/target ratio of 90:1. Target
cells (Yac-1, uninfected L929, or L929 cells infected with WNV for 24 h
with 10 PFU/cell) were labeled with 51Cr for 1 h, and
assays were performed in triplicate with 4 threefold dilutions of
effectors. Assay time was 6 h. The SEM of triplicates was never
greater than 2%.
|
|
 |
DISCUSSION |
The mechanism for augmentation of MHC class I cell surface
expression and antigen presentation induced in flavivirus-infected cells was investigated. Conflicting findings were obtained with two
peptide transporter-defective cell lines with respect to the question
of TAP dependence of the flavivirus-induced phenomenon. In an earlier
report we demonstrated a pronounced increase of peptide-loaded MHC
class I at the cell surface of TAP2-deficient RMA-S cells following
infection with a flavivirus (30). This was interpreted as
a consequence of the virus-induced and TAP-independent supply of
peptides into the lumen of the ER for assembly with MHC class I. In
contrast, flavivirus infection of T2 and LCL 721.174 cells, which both
lack the genes for TAP1 and TAP2, did not increase antigen presentation
via MHC class I, determined by flow-cytometric, biochemical, and
immunological assays. This apparent discrepancy could be explained by a
partial rather than complete antigen presentation deficit in RMA-S
cells. Accordingly, some import of peptides into the ER is retained in
RMA-S cells which can be enhanced by a flavivirus-mediated effect. A
residual capacity to present cytosolic peptides in RMA-S cells has been
observed by others (4, 9, 48) and is thought to be
mediated by a TAP1 homodimer (6, 21). The possibility that
T2 or LCL 721.174 lymphoblastoid cells were resistant to infection with
flaviviruses was excluded based on the synthesis of virus-specific
proteins in infected cells. In addition, enhanced Tc cell-mediated
lysis was seen in WNV-infected T2 cells expressing rat TAP proteins,
consistent with flavivirus-mediated upregulation of MHC class
I-restricted antigen presentation also in this cell line when the
peptide transporter is functional.
Here we present the first example of upregulation of TAP-dependent in
vitro peptide import into the ER that is mediated by a virus infection.
This biochemical assay complements our previous evidence for
flavivirus-induced modulation of MHC class I antigen presentation
(30) and localizes the impact of the virus infection to an
early stage of the MHC class I pathway. It conclusively shows that
flavivirus-induced augmentation of transport of peptide into the ER
requires functionally active TAP, since it was not found in the absence
of the peptide transporter, when peptide transport was prevented due to
inhibition of ATP hydrolysis, or when TAP-mediated peptide transport
was blocked in cells expressing the herpesviral TAP inhibitor, ICP47.
In most experiments ER-specific peptide glycosylation was used as a
read-out for peptide translocation. The stimulation of peptide
glycosylation, per se, by flavivirus infection can be ruled out given
that TAP mediated import of a nonglycosylatable peptide was also
consistently augmented in flavivirus-infected cells.
Interestingly, flavivirus-mediated upregulation of in vitro peptide
transport was strictly time and virus dose dependent and took place
during the latent or early productive phase of virus replication. This
strongly suggests that during this period of infection, viral
translation products are synthesized, or intracellular changes are
induced, which increase the net import of peptides into the ER. The
flavivirus genome encodes a single polyprotein precursor which is
cleaved into at least 10 viral proteins (36). The
polyprotein processing events during the latent period could, however,
yield different gene products than are found at later stages of virus
infection (14, 18). These products may be essential in the
regulation of flavivirus gene expression, exemplified by the switch
from minus-strand to predominantly plus-strand RNA synthesis later in
infection (2). Thus, a flavivirus (precursor) protein
produced early in infection could be responsible for the transient
upregulation of TAP-dependent peptide translocation into the ER. Since
viral protein synthesis is barely detectable during the latent period
of flavivirus infection, the presence and nature of alternative
polyprotein cleavage products remain poorly defined.
In addition to the characterization of the putative viral gene product
responsible for the induction of increased peptide import into the ER,
the detailed cell biological mechanism for this phenomenon has not been
fully resolved. Several putative mechanisms were ruled out as playing a
major role in the flavivirus-mediated effect on the MHC class I
pathway. First, we have been unable to find an increase in the
biosynthesis and steady-state levels of TAP1 or TAP2 proteins following
flavivirus infection, which could account for the sometimes >50%
increase of in vitro peptide transport rates. Second, we failed to find
an association of flavivirus-encoded proteins with the peptide
transporter in coimmunoprecipitation experiments with antibodies
directed against TAP using mild detergent conditions that were amenable
for immunoprecipitation of TAP-MHC class I complexes (32,
42; M. Lobigs, unpublished results). Third, it is conceivable
that flavivirus infection induces TAP to undergo posttranslational
modifications or to associate with cofactors that could result in
increased rates of peptide transport. Recently, it was suggested that
the transport function of TAP can be blocked by the phosphatase
inhibitor okadaic acid (15). However, we were unable to
detect an inhibitory effect of okadaic acid treatment on peptide
transport by uninfected or WNV-infected T2.rTAP1/2a cells
(M. Lobigs and F. Momburg, unpublished results). Fourth, the flavivirus
effect on peptide transport could occur after TAP-mediated peptide
translocation and influence the stability or export rates of
translocated peptides. Net peptide accumulation in the ER is a function
of TAP-mediated peptide import and peptide export through the Sec61p
channel into the cytoplasm (12). Therefore, it could be
envisaged that, for instance, delayed processing of the flavivirus polyprotein (14, 18, 41) may lead to a temporary
inhibition of Sec61p channels that could result in enhanced peptide
accumulation. However, most experiments with nonglycosylatable peptide
showed an uninhibited export from cells in the early phase of
flavivirus infection. Only occasionally did we observe a slightly
retarded kinetics of peptide export (F. Momburg and M. Lobigs,
unpublished results). Furthermore, only a small fraction of
glycosylatable peptides, which we have shown here to be imported into
the ER at an increased rate in flavivirus-infected cells, undergo
retrotranslocation from SLO-permeabilized cells or microsomes
(12). Therefore, we do not favor inhibition of peptide
export as the major cause for the flavivirus-induced increased recovery
of transported peptide.
The early increase of peptide import into the ER of flavivirus-infected
cells is followed by the later reduction of the recovery of
glycosylated peptide compared with that seen in uninfected cells. This
late downregulation is consistent with the effect of infections with
other viruses on peptide transport, probably due to the inhibition of
host cell macromolecular synthesis or the cytopathogenicity of the
infections. We have found, for instance, that infection of HeLa-S3
cells with VV-TK
for 16 h at a MOI of ~2 reduces
transport by >50% compared to that in uninfected cells; however, when
a recombinant VV encoding human TAP1 and TAP2 was used in the same
experiment, peptide transport was augmented by up to 80% of that in
uninfected cells (M. Lobigs, unpublished result).
The pronounced decrease of peptide translocation in cells infected with
flavivirus for 24 to 48 h contrasts with the upregulation of
peptide-loaded MHC class I molecules on the cell surface seen at these
time points (30). We suggest that the transient increase of peptide import early during infection augments the rate of peptide
loading of MHC class I molecules in the ER and, in turn, the
concentration of MHC class I on the plasma membrane and that the latter
is apparent for a prolonged time period due to the long half-lives of
peptide-loaded class I molecules at the cell surface (17).
The biological function of upregulation of MHC class I-restricted
antigen presentation in flavivirus-infected cells is not immediately
apparent in terms of an advantageous strategy for the virus. The
increased concentration of MHC class I-peptide ligand is expected to
result in the more efficient elimination of virus-infected cells by Tc
cells. On the other hand, an increase of class I MHC on the cell
surface reduces susceptibility to NK cell-mediated lysis (5,
38). Consistent with the latter is the observation that
flaviviruses are poor inducers of NK cells and that flavivirus
infection reduces the susceptibility of cells to NK cell lysis. An
escape of the mosquito-borne flaviviruses from the early NK cell immune
response may be crucial for the production of a viremia of sufficient
magnitude and duration for the transmission of the virus from an
infected host to the arthropod vector during the blood meal.
 |
ACKNOWLEDGMENTS |
We thank M. Pavy and R. Tha Hla for excellent technical assistance.
F.M. was a recipient of an Australian Research Council International
Fellowship, and M.L. was a recipient of a Travel Fellowship from the
Australian Academy of Science.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Division of
Immunology and Cell Biology, John Curtin School of Medical Research,
The Australian National University, P.O. Box 334, Canberra, A.C.T. 2601, Australia. Phone: (61) 2 6125-4048. Fax: (61) 2 6125-2595. E-mail: Mario.Lobigs{at}anu.edu.au.
 |
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Journal of Virology, June 2001, p. 5663-5671, Vol. 75, No. 12
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.12.5663-5671.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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