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Journal of Virology, June 2001, p. 5627-5637, Vol. 75, No. 12
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.12.5627-5637.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Adaptation of Tick-Borne Encephalitis Virus to
BHK-21 Cells Results in the Formation of Multiple Heparan Sulfate
Binding Sites in the Envelope Protein and Attenuation In Vivo
Christian W.
Mandl,*
Helga
Kroschewski,
Steven L.
Allison,
Regina
Kofler,
Heidemarie
Holzmann,
Tamara
Meixner, and
Franz X.
Heinz
Institute of Virology, University of Vienna,
Vienna, Austria
Received 31 January 2001/Accepted 20 March 2001
 |
ABSTRACT |
Propagation of the flavivirus tick-borne encephalitis virus in
BHK-21 cells selected for mutations within the large surface glycoprotein E that increased the net positive charge of the protein. In the course of 16 independent experiments, 12 different protein E
mutation patterns were identified. These were located in all three of
the structural domains and distributed over almost the entire upper and
lateral surface of protein E. The mutations resulted in the formation
of local patches of predominantly positive surface charge. Recombinant
viruses carrying some of these mutations in a defined genetic backbone
showed heparan sulfate (HS)-dependent phenotypes, resulting in an
increased specific infectivity and binding affinity for BHK-21 cells,
small plaque formation in porcine kidney cells, and significant
attenuation of neuroinvasiveness in adult mice. Our results corroborate
the notion that the selection of attenuated HS binding mutants is a
common and frequent phenomenon during the propagation of viruses in
cell culture and suggest a major role for HS dependence in flavivirus
attenuation. Recognition of this principle may be of practical value
for designing attenuated flavivirus strains in the future.
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INTRODUCTION |
RNA viruses are capable of rapid
adaptation to alterations in their growth environment. This has
historically been exploited to generate viruses with desired biological
properties, such as attenuated viral strains to be used as live
vaccines (1). On the other hand, unrecognized adaptive
mutations occurring during propagation of viruses in the laboratory can
be a source of misleading results and erroneous conclusions regarding
the viral life cycle in the natural host (4). It is
therefore of fundamental importance to understand the molecular
processes underlying virus adaptation to particular host cells.
Recently, much attention has been given to the interaction of viral
surface proteins with glycosaminoglycans (GAGs), which are present
almost ubiquitously on cell surfaces but vary with respect to their
composition and quantity among different cell types, tissues, and
cellular developmental stages (6, 64). Although the
overall picture is still far from being complete, it has become clear
during the past few years that viruses from many different families
interact with GAGs, in most cases heparan sulfate (HS) (7, 8, 11,
12, 14, 15, 18, 20, 34, 35, 38, 40, 50, 59, 61, 62, 63, 67, 70), and it has been proposed that the affinity of the viral surface for HS
may be an important determinant of tissue tropism and pathogenicity (5, 9, 17, 30, 48, 65). In most cases the affinity of the
virus for HS seems to be relatively low and may serve the purpose of
concentrating the virus on the cell surface to facilitate subsequent
binding to one or more high-affinity receptors (6, 21, 33, 53,
58). In some cases, however, the interaction may be more
specific, such as in the case of herpes simplex virus type 1, for which
interaction with an HS carrying a specific sulfation pattern can
functionally substitute for a protein receptor (60). For a
number of viruses, including alphaviruses (5, 37), pestiviruses (32), picornaviruses (17, 56),
and retroviruses (47, 50), it has been demonstrated that
adaptation to certain cell lines results in the selection of mutants
that bind HS with high affinity. Although the increased affinity for HS
was apparently favorable for growth in cell culture, GAG-adapted
viruses in several cases were found to have reduced virulence in
animals (5, 9, 36, 37, 39, 48, 56).
In this study we investigated the adaptation of a flavivirus,
tick-borne encephalitis (TBE) virus, to BHK-21 cells and the involvement of HS binding in this process. Members of the genus Flavivirus, family Flaviviridae, are mostly
arthropod-borne viruses and include, in addition to TBE virus, human
pathogens such as yellow fever virus, West Nile virus, Japanese
encephalitis virus, and the dengue viruses (66). They are
spherical, small (approximately 50 nm in diameter), enveloped particles
with a positive-stranded RNA genome that encodes all of the viral
proteins in a single long open reading frame. Mature virus particles
carry two membrane-associated proteins designated M (7 to 8 kDa) and E
(50 to 60 kDa). The latter mediates both receptor binding and fusion,
and its atomic structure has been solved by X-ray diffraction analysis
for TBE virus (55). Protein E forms an elongated structure
and is present on mature virus particles as head-to-tail homodimers. As
a distinctive feature that is different from many other enveloped
viruses, these dimers are oriented parallel rather than perpendicular
to the viral membrane. The surface of the virion therefore does not
contain protruding spikes but is fairly smooth. Based on structural
studies with recombinant subviral particles, virions are predicted to
contain 90 protein E dimers, which are organized in a regular
icosahedral lattice by lateral interactions (19). The
X-ray structure further indicates that protein E consists of three
distinct structural domains. One of these, domain II, contains a short
amino acid sequence that is highly conserved among all flaviviruses and
acts as an internal fusion peptide which, in the course of a low
pH-triggered conformational change, is involved in the fusion of the
viral envelope to a cellular membrane (2, 24). Domain III,
which has the typical fold of an immunoglobulin constant domain, has been proposed to contain a receptor binding site (39, 41, 55). However, despite a number of reports in which different potential flavivirus receptor molecules have been identified, the
initial stages of attachment and uptake of flaviviruses remain largely
unresolved (reference 39 and references therein; reference 41 and references therein). In two cases, HS was reported
to play a role in this process. In the case of dengue virus type 2, HS
was shown to be required for virus infectivity (11, 30), and mutants of Murray Valley encephalitis virus, another member of the
genus carrying an amino acid substitution within a putative receptor
binding motif, were found to have an increased dependence on GAGs
(39). Here we report the emergence of multiple potential HS binding sites distributed over the surface of protein E of TBE virus
as a result of adaptation to growth in BHK-21 cells. Using the
infectious cDNA clone of TBE virus (42), we investigated some of these mutations in detail with respect to their effect on
specific infectivity, growth, binding, and HS dependence in cell
culture as well as virulence in the mouse model.
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MATERIALS AND METHODS |
Virus and infectious cDNA clone.
Experiments were performed
with Western subtype TBE virus prototypic strain Neudoerfl or its
derivatives. Strain Neudoerfl is a tick isolate with a very short
passage history (26) and has been previously characterized
in detail, including its virulence and infectivity in the mouse model
(44). The complete genomic sequence of this strain is
available under GenBank accession no. U27495. Infectious RNA was
transcribed in vitro either from a full-length infectious cDNA clone
(plasmid pTNd/c) or after ligation of two partial clones (plasmids
pTNd/5' and pTNd/3') which contain the 5' one-third and the 3'
two-thirds of the genome of TBE virus strain Neudoerfl
(42).
For virus binding assays (see below) wild-type and mutant viruses were
grown in primary chicken embryo (CE) cells and purified as follows.
Supernatants were cleared from cell debris by centrifugation (Sorvall
F16/250 rotor; 10,000 rpm, 30 min, 4°C) and virus was harvested by
precipitation with 7% polyethylene glycol 6000 for 2 h at 4°C
and subsequent centrifugation at 10,000 rpm for 30 min at 4°C. Virus
pellets were resuspended in 1/100 of the original volume of TAN buffer
(0.05 M triethanolamine [pH 8.0], 0.1 M NaCl, 0.1% bovine serum
albumin [BSA] [essentially fatty acid free]), and insoluble
fragments were removed by centrifugation in an Eppendorf microcentrifuge (10,000 rpm, 10 min, 4°C). Then the preparation was
subjected to centrifugation through a sucrose gradient (10 to 50%
[wt/wt] sucrose in TAN buffer, pH 8.0) for 3 h at 38,000 rpm and
4°C in a Beckman SW-40 rotor. Gradients were fractionated using an
ISCO 640 density gradient fractionator. Virus was detected by
hemagglutination activity at pH 6.4 with goose erythrocytes (13) and was quantified by four-layer enzyme-linked
immunosorbent assay (ELISA) after sodium dodecyl sulfate treatment
(27).
Serial passages in BHK-21 cells.
Two different experimental
schemes involving infections at either a low or high multiplicity of
infection (MOI) were applied to passage TBE virus in BHK-21 cells. In
order to passage TBE virus at a low MOI, a log10 dilution
series of virus was prepared and used to infect the cells. Virus
production was monitored by a four-layer ELISA (28), and
the supernatant from the culture infected with the highest dilution
that still scored positive in the ELISA was again diluted in
log10 steps and used for the next round of infection. This
procedure was repeated three times, and then undiluted supernatant was
used to infect a large tissue culture flask of BHK-21 cells in order to
produce sufficient amounts of virus for the subsequent
characterization. In passaging experiments that involved a high MOI,
supernatants of infected cells were used without dilution for the next
round of infection and this procedure was repeated up to 28 times.
The passaged viruses that were analyzed included not only wild-type
strain Neudoerfl but also a number of recombinant derivatives
of strain
Neudoerfl that carried additional mutations that are
not directly
relevant to this study (e.g., deletions in the 3'
noncoding region) and
have been described in part elsewhere (
44).
Sequence analysis.
Virus was concentrated from cell culture
supernatants by ultracentrifugation, and the pellets were used to
prepare genomic RNA, which was sequenced by reverse transcription-PCR
(RT-PCR) by standard methods as described previously (68).
PCR-derived fragments were sequenced directly on both strands. The
sequence analysis always included the entire protein E coding region
and, in some cases, also included the region encoding the other
structural proteins and parts of NS5 and the 3' noncoding region. New
plasmid constructions were checked by sequencing the entire protein E coding region and the regions containing the restriction sites used for
cloning. Stocks of recombinant mutant viruses were checked prior to
their biological characterization by RT-PCR sequence analysis of the
structural protein coding region and parts of the noncoding regions and
the nonstructural protein coding region. Sequencing was performed using
an automated DNA sequencing system (Applied Biosystems).
Protein structure graphics.
The X-ray crystal structure of a
soluble ectodomain fragment of the TBE virus protein E
(55) (Protein Data Base [PDB] entry 1SVB) was used for
depictions of wild-type protein E and was the basis for models of the
mutants. Protein structure graphics were made using the molecular
visualization program Insight II, version 95.0 (Biosym/MSI, San Diego,
Calif.). The homology module of this program was used for making amino
acid replacements and finding plausible side chain conformations using
the "auto rotamer" search function. The main peptide chain
conformation was kept constant in all models, but in order to avoid
steric collisions it was necessary to change the original side chain
orientation of the mutated residues in the S158R/G159R and E201K
models. In the latter case the conformation of the side chain of Tyr
281 was also changed. Electrostatic potentials were calculated using the DelPhi module (protein dielectric, 2.0; solvent dielectric, 80;
solvent radius, 1.4 Å; ionic strength, 0.145 M; ionic radius, 2.0 Å) and displayed on a solid Connolly surface generated by Insight II.
Construction and derivation of recombinant viruses.
The
protein E mutations were introduced into plasmid pTNd/5' by swapping a
640-bp-long AgeI-BstXI fragment with the
corresponding fragment derived by RT-PCR from the passaged virus
containing the desired mutations(s). AgeI and
BstXI have unique cutting sites in this plasmid, at
positions 960 and 1600, respectively, of the strain Neudoerfl genome.
Infectious RNA was transcribed from the mutated plasmids after in vitro
ligation with plasmid pTNd/3', taking advantage of the unique
ClaI restriction site, and was transfected into BHK-21 cells
by electroporation as described previously (42). Cell
supernatants containing recombinant virus were harvested after 2 to 3 days and used to infect litters of suckling mice for the preparation of
high-titer virus stocks as described in previous studies (41,
44).
Plaque assay and determination of infectivity titers in cell
cultures.
BHK-21 cells, primary CE cells, and porcine kidney (PS)
cells were grown under standard conditions (31, 42).
Plaque assays were performed on PS cells as described previously
(31). Infectivity titers on BHK-21 and CE cells (for both
of which there is no plaque assay available) were determined by
endpoint dilution infection experiments. Virus preparations were
diluted in 0.5-log steps and used to infect cells in 24-well culture
plates. The culture medium was checked for virus production at 3 and 6 days postinfection by a four-layer ELISA (28).
Inhibition of virus growth by heparin or sulfate depletion.
Growth curves for BHK-21 cells were created by infecting cells grown in
24-well cluster plates with a low dose of virus in order to amplify
possible effects of mutations (10 infectious units, as previously
determined by endpoint titration on BHK-21 cells, per well). For
infection, virus was added to the cells in 200 µl of medium (Earle's
minimal essential medium containing 1% fetal calf serum) and incubated
for 1 h at 37°C. The inoculum was then removed by washing and
replaced by fresh growth medium. Virus release was monitored in
aliquots of the supernatant harvested at various time points ranging
from 24 to 108 h postinfection by a protein E ELISA (28).
For heparin inhibition assays, the same procedure was used, but the
virus was first incubated for 10 min with various concentrations
(between 0 and 500 µg/ml) of heparin (from bovine lung; Sigma) prior
to infection and the same concentrations of heparin were maintained
during infection and viral growth. Growth curves for sulfate-depleted
BHK-21 cells were created essentially as described by Chen et al.
(11) using chlorate as an inhibitor of sulfation (3,
22). Briefly, BHK-21 cells were cultivated for at least four
passages in sulfate-free medium (Earle's minimal essential medium
lacking MgSO4, supplemented with 0.811 mM
MgCl2, 2.4 mg of cysteine per liter, 1.5 mg of methionine per liter, and 5% dialyzed fetal calf serum), and 20 mM sodium chlorate was added 48 h before infection. Infection and monitoring of growth were then performed as described above.
Cell binding assay.
BHK-21 cells were rinsed twice with
phosphate-buffered saline, pH 7.4, containing 0.3 mM EDTA and were
harvested by scraping. Cells were suspended in a 50 mM HEPES buffer (pH
7.4, containing 100 mM NaCl, 0.4% BSA, 3 mM KCl, 0.5 mM
MgCl2, 1 mM CaCl2) and washed once in this
buffer. After counting of the cells with a CASY1 TT cell counter
(Schärfe System, Reutlingen, Germany), aliquots of
105 cells were incubated in a final volume of 50 µl for 1 h at 37°C with gentle constant agitation with a GAG-digesting enzyme
(heparinase III from Flavobacterium heparinum or
chondroitinase ABC from Proteus vulgaris; Sigma) or without
enzyme for the undigested cell control. After washing the cells three
times with 50 mM HEPES buffer (pH 7.4, 100 mM NaCl, 0.2% BSA), cells
were resuspended in 50 µl of this buffer chilled to 4°C, and 500 ng
of purified wild-type or mutant virus was added and incubated for
1 h at 4°C with gentle constant agitation. Unbound virus was
then removed by washing cells twice with the same buffer (4°C), and
bound virus was detected by two successive incubation steps at 4°C
for 30 min in approximately 50 µl with the protein E-specific
monoclonal antibody B2 (23) in a concentration of 4.35 µg/ml and a commercial fluorescein-conjugated goat anti-mouse
immunoglobulin G1 (Jackson ImmunoResearch Laboratories, Inc.) at a
concentration of 7 µg/ml. Cell-associated fluorescence was then
quantified in a FACSCalibur flow cytometer (Becton Dickinson; 15 mW
argon laser, 488 nm) with a 530/30 nm band-pass filter analyzing 10,000 events per sample. Median fluorescence activities were calculated using
CellQuest software and used as a parameter for virus binding.
Animal model.
Characterization of mutant viruses in the
animal model was performed as described in previous studies (41,
44). Briefly, groups of 10 5-week-old (body weight,
approximately 20 g) outbred Swiss albino mice were inoculated
subcutaneously, and survival was recorded for 28 days. Then mice were
bled, and seroconversion was detected by a TBE-antibody ELISA
(25). For the determination of the 50% lethal dose
(LD50) and the 50% infectious dose (ID50), mice were inoculated with sequential 10-fold dilutions of virus ranging
from 1 to 106 PFU. The calculation of LD50s and
ID50s was performed by the method of Reed and Muench
(54). For ID50 calculations, the number of
infected mice was taken to be the total of mice killed plus surviving
mice with detectable seroconversion. Surviving mice without detectable
serum antibody were scored as uninfected. To test whether seroconverted
mice had developed a protective immunity, mice were inoculated with a
challenge dose of 100 LD50s of the highly virulent TBE
virus strain Hypr (69).
 |
RESULTS |
Gain of net positive charge in protein E during growth in BHK-21
cells.
In the course of our studies with TBE virus we observed
that the virus often exhibited altered properties after a few passages in BHK-21 cells. To investigate this phenomenon in more detail we
analyzed TBE virus that had been passaged in BHK-21 cells at a high or
low MOI. Sequence analysis of viruses obtained from a total of 16 passaging experiments revealed that each of the viruses had acquired
one or two amino acid mutations within protein E, as summarized in
Table 1. Remarkably, all but one of these (the Leu-to-Phe mutation in experiment 3) were nonconservative substitutions, and there were no silent nucleotide changes except for
two that arose at higher passage numbers in experiments with a high MOI
(experiments 12 and 14). This strongly suggests that the observed
mutations did not occur randomly but instead were the result of a
specific selection pressure. Only 12 different mutation patterns were
obtained because in some cases identical mutations arose in separate
experiments. A striking common feature of all of the nonconservative
substitutions was that they caused an increase in the net positive
charge of protein E. This was achieved either by a gain of basic Arg or
Lys residues or by the replacement of acidic Asp or Glu residues. In
some cases a net gain of two positive charges occurred by the addition
of two Arg residues (experiment 5), the loss of two Asp residues
(experiment 15), or single mutations from a negatively charged amino
acid to a positively charged residue (experiments 7, 9, 10, 11, 13, and
14).
The rate of replacement of the wild-type by the mutant sequence
depended on the passage conditions. As indicated in Table
1, the
majority of our experiments were performed at a low MOI.
Under these
conditions, each mutant had completely displaced the
wild type within
four passages. Using a high MOI resulted in a
lower rate of
replacement. For example, in experiment 12 it took
eight passages to
completely abolish the wild-type signal from
the sequencing reaction
although the mutant sequence was already
detectable after the first
passage and accounted for approximately
50% of the virus population
after three passages (data not shown).
In the same experiment, no
reversions or additional nucleotide
changes were observed until the
23rd passage. At passage 28 an
additional silent mutation was detected
(Table
1). This mutation
was in codon 122 (GGG to GGA), which had
already undergone a primary
change from Glu (GAG) to Gly (GGG). It is
therefore likely that
the additional mutation served to optimize the
altered sequence
at the RNA level. This example illustrates the high
degree of
genetic stability of the protein E coding sequence under the
chosen
experimental conditions and corroborates the idea that the
mutations
that had emerged during the first few passages were the
result
of selection pressure and were not
random.
As shown in Fig.
1, the mutations were
scattered over almost the entire upper and lateral surface of protein E
and occurred
in all three of the protein domains. Most of the mutations
were
located on crests or other protruding structural elements. An
exception is the conservative mutation of Leu to Phe at residue
202, which is buried inside the molecule but is spatially close
to Ala 123, which changed to a Lys in the same experiment (experiment
3). A close
inspection of the mutations revealed that all of them
(except for the
conservative 202 mutation) were located in the
vicinity of already
existing positively charged surface residues.
Since the mutations
themselves contributed a net gain of positive
charge, the result in
each case was the formation of an expanded
cluster of positive charge
at the protein surface.

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FIG. 1.
Ribbon diagram showing a side view (A) and a top view
(B) of the ectodomain portion of the TBE virus protein E homodimer
(55). The positions of mutations generated by passaging
the virus in BHK-21 cells are shown by white spheres, with the amino
acid numbers indicated. Domain I of each subunit is colored red, domain
II is yellow, and domain III is blue. The fusion peptide
(2) at the tip of domain II is colored green, and the
disulfide bridges are orange. The first N-acetyl-glucosamine
residue of the carbohydrate attached to Asn 154 is shown in gray, and
the position where the peptide chain continues into the stem-anchor
region at the carboxy terminus is indicated by a "C."
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Generation of recombinant viruses with altered surface
charges.
To study the effects of individual mutations in a defined
genetic background, we constructed recombinant virus mutants using the
infectious cDNA clone of TBE virus strain Neudoerfl. Out of the 12 different mutation patterns that we obtained from the passaging experiments (Table 1) we selected the following three, each
representing a different type of mutation, for the generation of
recombinant viruses: (i) Glu 201
Lys, which caused a loss of a
negative charge and a gain of a positive charge by a single mutation;
(ii) Glu 122
Gly, which increased the net positive charge of protein
E by the loss of an acidic residue (remarkably, this same mutation occurred in 3 out of 16 experiments); and (iii) Ser 158
Arg and Gly
159
Arg, which was unique in that it had acquired two positive charges in adjacent positions.
The effects of these three types of mutations on the surface charge
distribution of protein E are shown in Fig.
2. Each of
the mutations was found to
have a strong effect on the local surface
potential, creating a
distinct patch of surface area that was
predominantly positively
charged. The location of the patch, however,
was different for each
mutation.

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FIG. 2.
Surface models of wild-type and mutant E proteins
colored by electrostatic potential. The viewing angle is the same as in
Fig. 1B. Positively charged surfaces are shown in blue, and negatively
charged surfaces are red. The yellow ovals indicate areas of increased
positive charge relative to wild-type protein E.
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The corresponding recombinant mutant viruses, designated E(E201K),
E(E122G), and E(S158R/G159R), were readily obtained from
the infectious
cDNA clone, and high-titer stocks were prepared
(Table
2). After their genetic identities had
been confirmed
by sequence analysis these virus stocks were used for
all subsequent
biological characterizations.
Plaque phenotypes and relative infectivity titers.
We started
our characterization of the recombinant mutant viruses by determining
how these mutations, which had originally arisen during adaptation to
BHK-21 cells, influenced viral growth in these and other cultured
cells. Plaque assays performed on PS cells revealed small plaque
phenotypes for all three of the recombinant mutants. This property was
more pronounced for mutants E(E201K) and E(E122G) than for mutant
E(S158R/G159R) (Table 2).
Another significant effect of the protein E mutations was found by
comparing infectivity titers in BHK-21 cells and primary
CE cells (Fig.
3). Starting with 10
4 PFU of
each mutant and wild-type virus (as determined by plaque
assays in PS
cells) (Table
2), infectivity titers for these two
cell types were
determined by endpoint dilution experiments. The
resulting values
plotted in Fig.
3 demonstrate that the infectivity
titer of parent
strain Neudoerfl was significantly higher with
CE cells than with
BHK-21 cells. In contrast, all three of the
mutants infected BHK-21
cells as well as or better than CE cells.
These results show that the
mutations increased the infectivity
of TBE virus for BHK-21 cells
relative to CE cells, and this may,
at least in part, be the functional
basis of adaptation to these
cells.

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FIG. 3.
Infectivity titers in BHK-21 (open bars) and CE (solid
bars) cells. Titers were determined by endpoint dilution experiments
(see Material and Methods), starting with 104 PFU of each
virus. Values shown are the means of four independent experiments (with
error bars representing standard deviations).
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Growth in sulfate-depleted BHK-21 cells.
We hypothesized that
the changes in infectivity titers described above might be due to more
efficient attachment of the virus mutants to the cell surface. The
nature of these mutations, which resulted in new clusters of positive
surface charges (Fig. 2), suggested that these viral mutants might
attach to negatively charged cell surface structures, in particular
GAGs. To test a possible dependence on such highly sulfated cell
surface polycarbohydrates, we infected BHK-21 cells grown under
conditions that largely inhibited sulfation of GAGs (see Materials and
Methods) and compared virus growth in these cells to that in normally
grown BHK-21 cells. The resulting growth curves obtained for the three
mutant viruses and the wild-type control are shown in Fig.
4. While the lack of sulfation had only a
slight effect on the wild-type virus, the growth of the three
recombinant mutants was significantly delayed by the inhibition of
sulfation.

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FIG. 4.
Growth curves obtained by infecting BHK-21 cells grown
under normal conditions ( ) or under conditions that prevent
sulfation of proteoglycans ( ). Cells were infected with 10 infectious units of wild-type or recombinant mutant virus, and release
of virus into the supernatants was monitored by a protein E ELISA (for
details, see Materials and Methods). A representative example of
several experiments is shown. hpi, hours postinfection; OD, optical
density.
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Growth inhibition by heparin.
To confirm the dependence of the
mutant viruses on GAGs, we used heparin, a soluble GAG structurally
closely related to HS, as a potential inhibitor of virus growth. BHK-21
cells were infected as described above, but this time heparin was added
at various concentrations to the cell culture medium. The resulting
growth curves shown in Fig. 5 demonstrate
that heparin very efficiently inhibited the growth of the three
mutants, whereas the growth of the wild-type virus was only slightly
delayed.

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FIG. 5.
Inhibition of virus growth by soluble heparin. Heparin
concentrations added to the virus and growth medium are as follows:
, no heparin; , 50 µg/ml; , 150 µg/ml; *, 500 µg/ml.
Cells were infected with 10 infectious units of wild-type or
recombinant mutant virus, and release of virus into the supernatants
was monitored by a protein E ELISA (for details, see Materials and
Methods). A representative example of several experiments is shown.
hpi, hours postinfection; OD, optical density.
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Binding to BHK-21 cells.
Finally, attachment of virus to the
cell surface and its dependence on the presence of GAGs was assessed
directly in a binding assay. After the addition of equal amounts of
purified mutant or wild-type virus to identical aliquots of cells,
binding was quantified by fluorescence-activated cell sorter analysis.
As shown in Fig. 6, mutants E(E201K) and
E(E122G) bound better to BHK-21 cells than did the wild-type virus.
While the difference in binding was quite large for mutant E(E122G), it
was less pronounced in the case of mutant E(E201K). Nevertheless, the
difference was reproducible in several separate experiments and
therefore is probably significant. Virions of mutant E(S158R/G159R)
turned out to be too unstable to be purified in sufficient quantities and thus could not be subjected to this binding assay. Pretreatment of
the cells with heparinase III strongly reduced the binding of the
mutant viruses, whereas digestion of cells with chondroitinase ABC had
no measurable influence on binding (Fig. 6), indicating that HS rather
than chondroitin sulfate is the crucial GAG for the attachment of these
TBE virus mutants.

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FIG. 6.
Binding of wild-type and mutant viruses to BHK-21 cells.
Equal amounts (500 ng) of purified virus were added to undigested
BHK-21 cells ( ) or cells that were predigested (+) with heparinase
III (top) or chondroitinase ABC (bottom). The amount of cell-bound
virus was quantified by fluorescence-activated cell sorter analysis
(see Materials and Methods). Median fluorescence intensities are
plotted as arbitrary units (a.u.). A representative example of several
experiments is shown.
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Virulence in the mouse model.
As shown in previous studies
(41, 44), peripheral inoculation of adult mice with
virulent TBE virus induces fatal encephalitis (neuroinvasiveness),
whereas attenuated mutants do not kill mice but are still capable of
replicating and inducing an antibody response (peripheral infectivity).
After inoculation of mice with various doses of virus the
LD50 and ID50 were determined as quantitative parameters of neuroinvasiveness and peripheral infectivity. The results
are shown in Fig. 7. All three of the
mutants exhibited a striking degree of attenuation compared to the
wild-type virus. For mutants E(S158R/G159R) and E(E122G) the
LD50 was as high as 106 PFU, i.e.,
approximately 100,000-fold higher than for the wild-type virus. All
three mutants, however, also suffered a loss of peripheral infectivity
(ID50) by a factor of approximately 100. The
LD50/ID50 ratio, termed "attenuation index"
(41), was determined to correct for these differences in
the ID50 in order to reveal the degree to which
neuroinvasiveness itself, rather than the overall infectivity, was
reduced. As shown in Fig. 7, the attenuation indices of the three
mutants ranged between 2.5 and 3.8, values indicative of strongly
attenuated phenotypes in the adult mouse model. Infectivity calculations were based on the detection of seroconversion (see Materials and Methods). To determine whether seroconversion also conferred a protective immunity, mice were challenged with a lethal dose (100 LD50s) of the highly virulent TBE virus strain
Hypr. All of the mice that had seroconverted were protected, and
therefore the 50% protective dose was equal to the ID50
(Fig. 7). Thus, the attenuated mutants efficiently induced protective
immunity in adult mice.

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|
FIG. 7.
Virulence (neuroinvasiveness) and peripheral infectivity
of wild-type and recombinant mutant viruses determined by subcutaneous
inoculation of 5-week-old mice. LD50s (top) and
ID50s (middle) were determined as described in Materials
and Methods. The attenuation index (bottom) was calculated as the
LD50/ID50 ratio.
|
|
 |
DISCUSSION |
During the past few years there has been a large accumulation of
data from various fields of research, including both cell biology and
the study of infectious agents, that illustrate the widespread
biological importance of interactions of biomolecules with GAGs
(6, 29, 51, 57). Since GAGs are almost ubiquitously and
often abundantly present on cell surfaces, molecules approaching the
cell are probably unable to avoid having to interact with them in one
way or another. Although in the case of viruses the affinity and
specificity of these interactions are usually low, the multiplicity of
biochemical structures, including highly diverse sulfation patterns,
also allows the creation of very specific binding sites that can serve
to perform defined biological functions (60). High- and
low-affinity interactions of viral proteins with GAGs may be important
determinants of tropism, virus spread, or the establishment of latent
infection (21, 35, 58, 60, 63, 64, 65). While the role of
GAG binding of viruses in their natural hosts remains rather
speculative, there is solid evidence from a number of quite diverse
virus families that cell culture adaptation can result in the selection
of mutants that exhibit a high affinity for binding to GAGs, in
particular to HS (5, 17, 32, 37, 47, 50, 56). In this
report, evidence for the selection of HS binding mutants in cell
culture (BHK-21 cells) was obtained for a flavivirus, TBE virus.
One observation from this study that stands out very prominently is the
large number of mutation patterns, all of which share the common
property of increasing the net positive charge of protein E and being
located within clusters of positively charged surface residues. All of
these mutation patterns created local patches of surface area with
increased positive surface charge similar to the three examples shown
in Fig. 2. It is therefore likely that all of these mutations created
HS binding sites. Characteristic primary sequence motifs of HS binding
sites have been deduced from the analysis of known HS binding proteins
(10, 29). In most of the sites created on the TBE virus E
protein, however, inspection of the primary sequence alone would not
allow them to be recognized as HS binding sites. In only one case
(experiment 11; Glu 295
Lys) did the mutation create a sequence
XBBXBX (where B is a basic amino acid and X is a hydrophobic
amino acid) corresponding to one of the HS binding primary sequence
motifs described by Cardin and Weintraub (10). In a few
other cases, the mutations are next to or part of a cluster of three or
four consecutive basic amino acids but do not match any of the
classical binding motifs (10, 29). In the majority of
cases, however, the basic amino acid residues are brought together only
by the three-dimensional folding of the protein, demonstrating the
limitations of predicting such functional sites from the primary
sequence alone. Structural requirements for HS binding sites have been
studied by solving the structures of protein-ligand complexes
(29, 51, 57). In one case, such a study was performed with
a virus, an HS binding strain of foot-and-mouth disease virus
(21). In that report, the authors raised the question of
whether the HS binding site had been created de novo by a particular
mutation during cell culture adaptation or whether there was a
structurally predisposed binding site that might have also been used
during the natural infection of the host. Such preformed sites may play
an important role for virus spread among different tissues and the
establishment of persistent infection. Mutations occurring during
infection could then modulate the tropism and pathogenicity of the
virus. The large number of potential binding sites that we observed in protein E of TBE virus argues against the notion that the creation of
such a site would require a very specific structural predisposition. It
suggests instead that the structural requirements to create a binding
site de novo are not very rigid. It remains to be investigated, however, to what extent the presence of existing mutations or the use
of different passaging conditions influences the type and position of
adaptive mutations that are favored. Although HS binding sites were
formed almost everywhere on the TBE virus protein E surface, one region
that remained free of mutations was the environment of the fusion
peptide (2) located at the tip of domain II (Fig. 1).
Interestingly, wild-type protein E already contains a predominantly
positively charged surface around this area (Fig. 2) and one can
speculate that a further increase of positive charge in this region
might be structurally or functionally detrimental.
The biological characterization of the three recombinant mutants
revealed that they shared a small plaque phenotype in PS cells and
significant attenuation of their neuroinvasiveness in adult mice.
Preliminary characterization of some of the other passaged mutants
indicated that they also exhibited these characteristics (data not
shown). Two of the mutations had been investigated previously in
different contexts [mutation Ala 123
Lys in the monoclonal escape
mutant VIE3 (31) and Thr 310
Lys as an engineered
mutant, E(T310K) (41)] and were shown then to form small
plaques and to be attenuated, which in the light of the results
presented here can be interpreted as possibly being due to altered HS
dependence. In fact, it seems likely that HS dependence could explain
the attenuation of a considerable number of mutant flaviviruses
described in the literature. A connection between HS dependence and
attenuation in vivo was first recognized for Murray Valley encephalitis
virus by Lee and Lobigs (39), who analyzed mutations
specifically introduced into a putative receptor binding motif on the
lateral surface of domain III. Inspection of previously described
attenuated mutants of various flaviviruses carrying mutations within
protein E (reviewed in reference 45) indicated that in a
number of cases these mutations increased the net positive charge. Even
widely used live vaccine strains of yellow fever virus
(52) and Japanese encephalitis virus (49)
exhibit, among other mutations elsewhere in the genome, this type of
mutation in their protein E coding regions, suggesting that HS binding
may be one of the attenuating principles of these vaccines.
The combination of HS binding with a small plaque phenotype and
attenuation in vivo has also been observed for representatives of a
growing number of other virus families (5, 9, 32, 36, 37, 39, 48,
56). The general conclusion arising from all of these studies is
that attachment to HS provides a decisive selective advantage in cell
culture but that in the natural host virus spread is impaired and
clearance from the circulation is accelerated (5, 8, 9,
36). The available evidence from studies of very diverse virus
families indicates that this is a very common mechanism of cell culture
adaptation and attenuation which can be exploited for the design of
nonpathogenic vaccine strains or vectors for gene delivery
(16).
However, the fact that this adaptation is apparently common and occurs
rapidly calls for attention to the possibility that laboratory strains
might have suffered this kind of mutation during their original
isolation and therefore could differ significantly in their biology
from the virus populations circulating in nature. In the case of
flaviviruses, dengue type 2 virus has been reported to utilize HS for
infection (11). It is unclear whether the strain used in
this study (a 1974 isolate from Tonga) had previously undergone an
adaptive mutation or whether wild-type dengue virus in fact shows
dependence on HS. TBE virus strain Neudoerfl, used as the wild-type
strain in our study, has only a short passage history in baby mice and
CE cells (26). The data presented here do not rule out the
possibility that strain Neudoerfl interacts to some degree with HS,
albeit with a lower affinity than that of the adapted mutants. Since
attachment and uptake of TBE virus and other flaviviruses are still
only poorly understood, a possible role for HS during entry of
wild-type flaviviruses will deserve particular attention in future
studies. The mutations identified in this study will aid to better
define the structural requirements for interactions with HS and
significantly increase our repertoire of molecular modifications that
can be used to attenuate TBE virus as well as other flaviviruses.
 |
ACKNOWLEDGMENTS |
We gratefully acknowledge the excellent technical assistance of
Heide Dippe, Silvia Röhnke, and Melby Wilfinger.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Institute of
Virology, Kinderspitalgasse 15, A-1095 Vienna, Austria. Phone: 43-1-404 90, ext. 79502. Fax: 43-1-406 21 61. E-mail:
christian.mandl{at}univie.ac.at.
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Journal of Virology, June 2001, p. 5627-5637, Vol. 75, No. 12
0022-538X/01/$04.00+0 DOI: 10.1128/JVI.75.12.5627-5637.2001
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