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Journal of Virology, May 2000, p. 4351-4360, Vol. 74, No. 9
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Dominant-Negative Inhibition of Prion Formation
Diminished by Deletion Mutagenesis of the Prion Protein
Laurence
Zulianello,1,2
Kiyotoshi
Kaneko,1,2
Michael
Scott,1,2
Susanne
Erpel,1,2
Dong
Han,1,2
Fred E.
Cohen,1,3,4,5 and
Stanley B.
Prusiner1,2,3,*
Institute for Neurodegenerative
Diseases1 and Departments of
Neurology,2 Biochemistry and
Biophysics,3
Medicine,4 and Cellular and
Molecular Pharmacology,5 University of
California, San Francisco, California 94143
Received 8 October 1999/Accepted 6 January 2000
 |
ABSTRACT |
Polymorphic basic residues near the C terminus of the prion protein
(PrP) in humans and sheep appear to protect against prion disease. In
heterozygotes, inhibition of prion formation appears to be dominant
negative and has been simulated in cultured cells persistently infected
with scrapie prions. The results of nuclear magnetic resonance and
mutagenesis studies indicate that specific substitutions at the
C-terminal residues 167, 171, 214, and 218 of PrPC act as
dominant-negative, inhibitors of PrPSc formation (K. Kaneko
et al., Proc. Natl. Acad. Sci. USA 94:10069-10074, 1997). Trafficking
of substituted PrPC to caveaola-like domains or rafts by
the glycolipid anchor was required for the dominant-negative phenotype;
interestingly, amino acid replacements at multiple sites were less
effective than single-residue substitutions. To elucidate which domains
of PrPC are responsible for dominant-negative inhibition of
PrPSc formation, we analyzed whether N-terminally truncated
PrP(Q218K) molecules exhibited dominant-negative effects in the
conversion of full-length PrPC to PrPSc. We
found that the C-terminal domain of PrP is not sufficient to impede the
conversion of the full-length PrPC molecule and that
N-terminally truncated molecules (with residues 23 to 88 and 23 to 120 deleted) have reduced dominant-negative activity. Whether the
N-terminal region of PrP acts by stabilizing the C-terminal domain of
the molecule or by modulating the binding of PrPC to an
auxiliary molecule that participates in PrPSc formation
remains to be established.
 |
INTRODUCTION |
The prion diseases are a group of
neurodegenerative disorders that include kuru, Creutzfeldt-Jakob
disease (CJD), Gerstmann-Sträussler-Scheinker disease, and fatal
insomnia in humans, scrapie in sheep, and bovine spongiform
encephalopathy in cattle. Prion diseases are unique in that they
present as sporadic, inherited, and infectious disorders (36,
42). Additionally, the possible transmission of bovine spongiform
encephalopathy prions to humans has aroused considerable concern
(63, 64).
Prions consist largely, if not entirely, of an abnormal,
disease-causing prion protein (PrP) isoform designated
PrPSc. A posttranslational process modifies the
conformation of the cellular PrP isoform (PrPC) to form
PrPSc, which is rich in
-sheets (3, 8, 32).
In all natural and experimental prion diseases, PrPSc or
other abnormal PrP isoforms accumulate in the central nervous system,
resulting in neurologic dysfunction (5, 10, 16).
PrPSc formation seems to occur in rafts or caveola-like
domains (CLDs) on the external surfaces of cells (15, 23, 30, 57,
60). The results of transgenic (Tg) mouse studies in which PrP is
expressed under the control of ectopic promoters suggest that a limited
number of cell types are capable of converting PrPC into
PrPSc (41). This result is consistent with those
of earlier investigations using both Tg mice and cultured cells
contending that an auxiliary factor participates in PrPSc
formation (24, 59).
Transmission of human prions to Tg mice expressing either a chimeric
human PrP (HuPrP)-mouse PrP (MoPrP) denoted MHu2M or HuPrPC
on a null (Prnp0/0) background, but not to mice
expressing both MoPrPC and HuPrPC, led us to
conclude that MoPrPC inhibits HuPrPSc formation
(59). In contrast, MoPrPC was a weak inhibitor
of MHu2M PrPSc formation, suggesting that mouse residues at
the N or C terminus of PrP compete effectively to reduce the inhibition
manifested by wild-type (wt) MoPrPC. Since earlier studies
suggested that the N terminus of PrP is not required to initiate or
sustain PrPSc formation (38, 46), we concluded
that the C-terminal region of PrPC must be the site where
binding to another molecule must occur (59). Those results
suggested either that MoPrPC binds to HuPrPSc
in the inoculum, preventing its interaction with transgene-encoded HuPrPC, or that MoPrPC binds more tightly than
does HuPrPC to a mouse factor that participates in
PrPSc formation.
The first possibility, that MoPrPC binds to
HuPrPSc and prevents its interaction with
HuPrPC, suggested that MoPrPC has a higher
affinity for HuPrPSc than does HuPrPC and led
us to postulate that MoPrPC has a greater affinity for
heterologous PrPSc than for homologous PrPC.
However, results from earlier studies show that homologous
PrPC and PrPSc interact much more readily than
do the heterologous isoforms (39).
The second possibility, that MoPrPC binds more tightly to a
mouse factor that participates in PrPSc formation than does
HuPrPC, led to the hypothesis that MoPrPC binds
to homologous PrPSc with a greater affinity than does
heterologous PrPC. Additional evidence favoring this
interpretation was provided by studies with chronically infected mouse
neuroblastoma (ScN2a) cultured cells (24). In ScN2a cells,
we found that a chimeric HuPrP-Mo PrP containing the seven C-terminal
HuPrP-specific residues was not converted into PrPSc;
moreover, this chimeric PrP did not inhibit the conversion of MoPrPC into PrPSc (24). In light of
the results with ScN2a cells, we had argued that MoPrPC has
a higher affinity for MoPrPSc than for HuPrPC.
The foregoing findings are more readily explained in terms of
PrPC binding to an auxiliary molecule that participates in
the transformation of PrPC into PrPSc. We
presume that this auxiliary molecule is a protein based upon its
exquisite specificity for PrPC and provisionally designated
it protein X (24, 59). Although a variety of proteins have
been reported to bind to PrP and hence are candidates for protein X,
none have been shown to participate in PrPSc formation
(12, 28, 31, 43, 65).
Using site-directed mutagenesis in conjunction with the nuclear
magnetic resonance structure of recombinant Syrian hamster (SHa) PrP,
the binding site on PrPC for protein X was defined
(24). The side chains of four PrP residues that are
sequentially distant but spatially quite proximal bind to protein X. Substitution of one or more of these residues with a basic amino acid
inhibits PrPSc formation, apparently by binding to protein
X. The binding of PrPC bearing basic residues at the
protein X binding site seems to explain dominant-negative inhibition of
PrPSc formation. In support of this concept, polymorphisms
in humans and sheep that render these mammals resistant to prion
disease (21, 52, 62) are the result of basic residue
substitutions in PrP at the protein X binding site.
To define those regions of PrPC that have a role in the
dominant-negative inhibition of PrPSc formation, we
constructed a variety of truncated PrP molecules carrying the basic
substitution Q218K. To distinguish recombinant PrPs from endogenous
MoPrP in ScN2a cells, we substituted two residues found in SHa and
HuPrP, but not MoPrP, which form an epitope for the 3F4 monoclonal
antibody (MAb) (26). The resulting mutant PrP carrying the
3F4 epitope and the Q218K substitution was designated MHM2(Q218K) or
MHM2 PrP(Q218K) (24, 49).
As reported here, we found that full-length MHM2 PrP(Q218K) completely
abolished formation of MHM2 PrPSc in ScN2a cells.
N-terminal truncations of PrP were less effective inhibitors of
PrPSc formation than full-length PrP. Although an
N-terminally truncated PrP(90-231,Q218K) was a reasonably good
inhibitor of PrPSc formation, addition of residues from the
extreme N terminus enhanced the inhibition. The residues in PrP(90-231)
correspond to those found in PrP 27-30, which is the protease-resistant
core of PrPSc that retains infectivity. As few as six
residues from the N terminus of PrP
(23KKRPKP29) fused to PrP(90-231,Q218K)
substantially increased dominant-negative inhibition of
PrPSc formation.
 |
MATERIALS AND METHODS |
Cultured cells.
Mouse neuroblastoma N2a cells were obtained
from the American Tissue Culture Collection (Rockville, Md.).
Scrapie-infected N2a cells (ScN2a cells) are chronically infected with
scrapie prions and produce both MoPrPC and
MoPrPSc as described previously (6). All cells
were grown and maintained at 37°C in minimal essential medium
supplemented with 10% fetal bovine serum. In some cases, cells were
treated with phosphatidyl-inositol phospholipase C (PIPLC) by
incubation for 4 h at 37°C in OptiMEM with 0.5 U of PIPLC
(Boehringer Mannheim) per ml.
Plasmid constructions.
All plasmids used in this study were
derived from the MHM2 PrP gene construct cloned into the pSPOX-neo
vector as described previously (49). Introduction of the
Q218K substitution was made by PCR using the oligonucleotides described
previously (24) or by cloning the
BstEII-XhoI fragment from MHM2(Q218K)
(24) in the appropriate truncated constructs.
Deletions of residues 23 to 88 and residues 23 to 88 108 to 121 were
described previously (29). Similarly,
PrPC(
107-120) was obtained using the following primers:
5' CCATAATCAGTGGAACAAGCCCAGCAAACCAAAACCGTGGG 3' and 5'
GCCCCCCACGGTTTTGGTTTGCTGGGCTTGTTCCACTGATTATGGGGTAC 3'. The
oligonucleotides that carry the restricted KpnI and
EcoO109I sites were annealed. The double-stranded DNA
fragment was treated with kinase, purified on a Sephadex G25 column,
and ligated into a derivative of pSP72. The pSP72 derivative vector was
constructed as follows: pSP72 was restricted with EcoO109I
and treated with Klenow fragment to generate a vector lacking the
EcoO109I site. To this vector, the MHM2 gene was ligated
between the BglII and XhoI sites to generate the
derivative vector. Ligation of the double-stranded DNA generated a
plasmid that produced PrP with 13 amino acids within the N-terminal
domain of PrPC deleted. The
BglII-XhoI fragments were then inserted into
pSPOX-neo vector between the BamHI and XhoI sites.
PrP
C(

23-120) was constructed by using the T7 primer
5' AAATTAATACGACTCACTAT 3' and the oligonucleotide 5'
GTTCCACCCACCAGGCTTTGGCCGAAGGCCCCCCACGCAGAGGCCGAC
3'. The product
obtained by PCR was restricted with
BglII and
EcoO109I and cloned into the pSP72-derived vector lacking
EcoO109I
and containing the entire MHM2 gene. Restriction
with
EcoO109I
and ligation resulted in a vector that
expressed PrP proteins
with 97 amino acid residues missing from the
N-terminal region
of PrP, designated PrP
C(

23-120).
Restricted fragments
BglII-
XhoI, with or without
the
Q218K mutation, were subcloned into the expression vector
pSPOX-neo.
PrP
C(

112-145) was obtained by annealing the
oligonucleotides 5'
GTCCACATGCT TGAGGT TGGT TT TTGGT TTGCTGGGCT TGT TCCACTGAT
TATGGGTAC
3' and 5'
CCATAATCAGTGGAACAAGCCCAGCAAACCAAAAACCAACCTCAAGCATGTG
3'. The
double-stranded DNA fragment was cloned into pSP72 containing
the MHM2
DNA construct between the
KpnI and
AvaII
sites.
MHM2(V214I,Q218K) was obtained after PCR using the primer 5'
TAATAGGCCTGGGACTCCTTTTTGTACTGGGTGATGCACATCTG 3' and the
BstEII
primer described previously (
24). After
restriction with
BstEII
and
StuI, the DNA
fragment was cloned into the MHM2 gene and inserted
in the pSP72
vector. The
BglII-
XhoI fragment that contained
the
entire mutated gene was then subcloned into the pSPOX vector
restricted
with
BamHI and
XhoI. From the same
construct, the
BstEII-
XhoI
fragment was also
cloned in the pSP72 vector that expressed MHM2(Q171R).
Again, the
BglII-
XhoI-restricted fragment was subcloned into
the
pSPOX-neo vector to express the triply mutated PrP protein (Q171R,
V214I, and
Q218K).
PrP
C(

23-111) was obtained using PCR with the following
oligonucleotides, the T7 primer 5' AAATTAATACGACTCACTAT 3'
and the
primer 5'
GTTCCACCCACCAGGC T T TGGCCGAAGGCCCCCCACCACGGCCCC TGCCGCAGCAGCGCCGGCCATGCAGAGGCCGAC
3'. The double-stranded DNA fragment, restricted with
BglII and
EcoO109I, was cloned into the vector
pSP72 mutated to eliminate
the
EcoO109I site. This vector
contains the entire MHM2 gene between
the
BglII and
XhoI sites. Again,
BglII-
XhoI-restricted fragments
were ligated into
the expression vector pSPOX-neo.
PrP
C(Q218K,

231-253) was generated using PCR with the T7
primer and the oligonucleotide 5'
T TAAACGTACCCTCGAGTCACGATCGTCGGCCGTCGTAATAGGCCTGGGA
3' on the
pSP72 vector that contains the MHM2(Q218K) construct.
The
double-stranded DNA fragment was restricted with
BglII and
XhoI and cloned into the pSPOX-neo expression
vector.
PrP
C(

32-80) was generated using PCR with the T7 primer
and the primer 5'
CCACTGATTGTGGGTACCCCCTCCTTGGCCCCACCCTCGAGGCTTTGGCCCGC
3'. The PCR
fragment was then restricted with
BglII and
KpnI
and
cloned into the pSP72 vector that contains the entire MHM2
sequence.
After restriction map verification and sequence, the
BglII-
XhoI
fragments were ligated into the
expression vector pSPOX-neo.
Similarly, PrP(

30-91) was obtained using PCR with the primers T7 and
5' CCACTGATTGTGGGTACCCCCTCCAGGCTTTGGCCGCTTTTTGCGAGGCC
3'.
PrP(

52-91) and PrP(OR+6) were previously described (
46).
Introduction of the substitution Q218K was made as described previously
by cloning the
BstEII-
XhoI fragment of the
MHM2(Q218K)
construct (
24).
Transfection, limited proteolysis, and Western blotting.
N2a
and ScN2a cells were transiently transfected with appropriate DNA
constructs (5 or 10 µg) using the DOTAP DNA transfection kit
(Boehringer Mannheim). Cotransfections of the ScN2a cells with two
different DNA constructs were performed as described previously
(17, 24, 25). Cells were lysed in lysis buffer T (10 mM
Tris-HCl [pH 8.00], 0.5% deoxycholate, 0.5% Nonidet P-40, 150 mM
NaCl) as described previously (49). Proteinase K (PK) (Boehringer Mannheim) was added to the cell lysate to attain a final
concentration of 20 µg/ml, and the samples were incubated at 37°C
for 60 min. The reaction was stopped by adding phenylmethylsulfonyl fluoride at a final concentration of 1 mM. Insoluble PK-resistant PrPSc was recovered after centrifugation at
100,000 × g for 60 min, and the pellet was
resolubilized in lysis buffer T and Laemmli sample buffer
(27). In some cases, 30 µl of cell lysate was incubated
overnight at 37°C with 1 U of PNGase (Boehringer-Mannheim).
After sodium dodecyl sulfate-polyacrylamide gel electrophoresis,
proteins were transferred to nitrocellulose and Western blots
were
performed as previously described (
49). PrP was detected
with the anti-PrP 3F4 MAb as well as with RO73, a polyclonal antibody.
Anti-PrP 3F4 is a mouse MAb raised against SHaPrP 27-30 (
26)
that recognizes the Met 109-Met 112 epitope (
45) and does
not
bind to MoPrP. RO73 is a rabbit antiserum raised against SHaPrP
27-30 (
50) that recognizes
MoPrP.
Indirect immunofluorescence.
Cells were grown on coverslips
prior to transfection. When PIPLC treatment was performed, cells were
treated with the enzyme for 4 h before indirect fluorescence was examined.
The cells were washed twice with phosphate-buffered saline (PBS), fixed
with 4% paraformaldehyde for 30 min at room temperature,
and then
rinsed three times. To block nonspecific binding, cells
were treated
with PBS containing 5% dry milk and 1% bovine serum
albumin for
1 h. In order to visualize the intracellular protein
expression,
permeabilization of the cells was performed in blocking
solution
containing 0.2% saponin. The MAb 3F4 (diluted 1:100)
was incubated
with the cells for 1 h at room temperature in the
blocking
solution. The cells were then washed five times with
PBS and incubated
for 30 min at room temperature with fluorescein
isothiocyanate-conjugated rabbit anti-mouse immunoglobulin G
(Boehringer)
diluted 1:100 in PBS containing 1% bovine serum albumin.
After
the cells were washed five times with PBS, 5 µl of mounting
medium
(VECTASHIELD) containing diaminopimelic acid (VECTOR) was added
to each glass slide, the coverslips were placed on the slides,
and
indirect immunofluorescence was visualized with a fluorescence
microscope (LEICA) using a 100× oil
objective.
 |
RESULTS |
To identify those regions of PrP that participate in
dominant-negative inhibition of PrPSc formation, we carried
out a deletion mutagenesis study. Before making deletions in PrP, we
asked if inhibition by the Q218K substitution could be augmented by
additional substitutions of basic residues. Upon finding that
additional basic amino acids diminished the inhibitory effect of the
Q218K mutation, all subsequent deletion and truncation studies were
restricted to constructs carrying only the Q218K substitution (Fig.
1). Recombinant PrPs were assessed by
measuring their effect on PrPSc formation in ScN2a cells.
Both mutant MHM2 PrP(Q218K) and wild-type (wt) MHM2 PrP were
transfected into ScN2a cells, and the formation of MHM2
PrPSc was measured by Western blotting using the 3F4 MAb.

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FIG. 1.
Schematic representations of the truncated PrP mutant
proteins used in this study. At the top is a schematic representation
of SHaPrP(23-231). The secondary structures of recombinant
SHaPrP(90-231) are denoted as follows: horizontal boxes for the helical
structures and black arrows for the -strands. Deletions are shown as
gaps, and the amino acid positions bordering deletions are shown in
parentheses in the construct designations. The protein X binding domain
is located at the C-terminal region of PrPC where
substitutions at residues 167, 171, 214, and 218 are significant for
the dominant-negative phenotype. Octarepeat sequences are depicted as
green boxes, and amino acid substitutions are depicted as vertical red
bars.
|
|
Multiple basic residues diminish dominant-negative inhibition.
The results of mutagenesis studies identified four residues, 167, 171, 214, and 218, that form the epitope for the binding of PrP to protein X
(24). Many of the mutations at these residues abolished
PrPSc formation, and some of these mutants exhibited
dominant-negative inhibition (24). Because dominant-negative
phenotypes are typically due to the sequestration of a rate-limiting
factor in a metabolic process, we asked whether multiple mutations
might be synergistic.
First, PrPs carrying multiple mutations were assessed for conversion
into PrP
Sc upon transient transfection into
scrapie-infected mouse neuroblastoma
cells (ScN2a). Neither
PrP(V214I,Q218K) nor PrP(Q171R,V214I,Q218K)
was converted into
PrP
Sc, as judged by the absence of PK-resistant PrP in
ScN2a lysates
(Fig.
1 and
2A and B).
Second, the effects of the double and triple
mutations on binding of
PrP to protein X were analyzed by measuring
conversion of the wt MHM2
PrP
C into PrP
Sc; neither the double nor triple
PrP mutant prevented the conversion
of wt MHM2 PrP
C into
PrP
Sc (Fig.
2C to E). In contrast, the single PrP mutants,
i.e., PrP(Q171R),
PrP(V214I), or PrP(Q218K), did exhibit
dominant-negative inhibition
of conversion of wt MHM2 PrP
C
into PrP
Sc (
24).

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FIG. 2.
Combined effects of the substitutions at positions 171, 214, and 218 within the protein X binding site at the C-terminal domain
of the PrP protein. (A) Western blot analysis of the expression of PrP
mutant proteins in ScN2a cells and (B) conversion of individual MHM2
constructions into PrPSc after treatment with PK (20 µg/ml). Lanes: 1, mock transfection; 2, MHM2; 3, MHM2(Q218K); 4, MHM2(V214I,Q218K); 5, MHM2(Q171R,V214I,Q218K). (C to E) Influence of
the PrP mutants in preventing the conversion of the wt MHM2 protein.
Coexpression of the mutant proteins with MHM2 in the orientation
described above for panels A and B prior (C) or after (D and E) PK
treatment. ScN2a cells were transfected with the two DNA constructs,
and the conversion of MHM2 PrPSc was specifically monitored
using the MAb 3F4. Lanes: 1, mock transfection; 2, MHM2; 3, coexpression of MHM2 and MHM2(Q218K); 4, MHM2(V214I,Q218K); 5, MHM2(Q171R,V214I,Q218K). The gels were stained with anti-PrP 3F4 MAb (A
to D) or with RO73 antibody (E), which recognizes endogenous
MoPrPSc as well as chimeric constructs. Apparent molecular
masses (in kilodaltons) based on migration of protein standards are
given to the left of the gels.
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|
Taken together, our results indicate that the effects of the C-terminal
PrP mutations Q171R, V214I, and Q218K are not additive.
We suspect that
the combination of these mutations destabilizes
the protein X binding
site either through unfavorable charge-charge
interactions between R171
and K218 or owing to the influence of
the

-branched I214 on the
stability of the

-helical backbone.
Against this background, we
proceeded to analyze the impact of
mutations in other regions of the
PrP(Q218K) molecule on the dominant-negative
phenotype.
Dominant-negative phenotype requires targeting PrP to the cell
surface.
The mutant MHM2 PrP(Q218K) substitution was correctly
targeted to the cell surfaces of neuroblastoma (N2a) cells as
demonstrated by immunofluorescence microscopy (Fig.
3). N2a cells were transiently transfected with MHM2 PrP(Q218K) and treated with PIPLC. This PIPLC
treatment released the mutant PrP from the cell surface, as
demonstrated by immunoblotting (data not shown).

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FIG. 3.
Cell surface localization of MHM2 and various PrP mutant
proteins expressed in N2a cells as measured by indirect
immunofluorescence microscopy. Cell surface expression (A, C, E, G, and
I) and internal localization in permeabilized cells (B, D, F, H, and J)
of proteins MHM2 (A and B), MHM2(Q218K) (C and D), MHM2( 23-88,Q218K)
(E and F), MHM2( 52-91,Q218K) (G and H), and MHM2( 32-80,Q218K) (I
and J) are shown. All the N2a cells were incubated with anti-PrP 3F4
MAb as described in Materials and Methods.
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Mutant MHM2 PrP(Q218K,

231-254) lacking the glycosylphosphatidyl
inositol (GPI) anchor signal sequence was transfected into
ScN2a cells
to determine if it could be converted into PrP
Sc as judged
by the acquisition of protease resistance. As expected,
no mutant
PrP
Sc was found (Fig.
4A and
B, lanes 4). Next, MHM2
PrP(Q218K,

231-254)
was examined for inhibition of conversion of wt
MHM2 PrP
C into PrP
Sc. It is well documented
that the cell surface localization of
PrP is essential for
PrP
Sc replication (
23,
57). MHM2
PrP
C was converted into PrP
Sc in cotransfected
cells that expressed both MHM2 PrP(Q218K,

231-254)
and wt MHM2 (Fig.
4A and B, lanes 6). These results indicate that
the dominant-negative
phenotype is manifested only if mutant PrP(Q218K)
is correctly targeted
to the cell surface.

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FIG. 4.
Requirement of the GPI anchor signal sequence for
efficient dominant-negative phenotype of the MHM2(Q218K) chimera.
Expression of the chimeric PrP and PrP(Q218K) lacking the GPI anchor
(A) and conversion of MHM2 PrPC into PrPSc (B
and C). Lanes: 1, mock transfection; 2, MHM2; 3, coexpression of MHM2
and MHM2(Q218K); 4, MHM2( 231-254); 5, MHM2(Q218K, 231-254); 6, coexpression of MHM2 and MHM2(Q218K, 231-254). The PrP proteins were
stained with the anti-PrP 3F4 MAb (A and B) or with the polyclonal RO73
antibody (C). Apparent molecular masses (in kilodaltons) based on
migration of protein standards are given to the left of the gels.
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N-terminal PrP deletions and protein X.
In ScN2a cells, MHM2
PrP(
23-88) was earlier reported to acquire PK resistance
(46). To determine if MHM2 PrP(
23-88) binds to protein X,
we cotransfected ScN2a cells with MHM2 PrP(
23-88,Q218K) and either
MHM2 PrP or MHM2 PrP(
23-88). Immunofluorescence microscopy of N2a
cells revealed that MHM2 PrP(
23-88,Q218K), like full-length MHM2
PrP(Q218K), is expressed on the external surface (Fig. 3C). In ScN2a
cells, MHM2 PrP(
23-88,Q218K) was not converted into PrPSc (data not shown).
When MHM2 PrP(

23-88,Q218K) and full-length MHM2 PrP were coexpressed
in ScN2a cells, the formation of MHM2 PrP
Sc was not impeded
(Fig.
5A and B, lanes 5). In contrast,
when MHM2
PrP(

23-88,Q218K) and MHM2 PrP(

23-88) were coexpressed
in ScN2a
cells, the formation of MHM2 PrP
Sc(

23-88) was
inhibited (data not shown). These findings suggest
that the avidity of
MHM2 PrP(

23-88,Q218K) for protein X is less
than that of full-length
PrP(Q218K).

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FIG. 5.
Reduced avidity of N-terminally truncated MHM2(Q218K)
molecules for protein X. (A) Western blot analysis of the coexpression
of mutant proteins with MHM2 and (B) conversion of MHM2
PrPC into PrPSc, monitored with 3F4 MAb, after
treatment with PK (20 µg/ml). MHM2 alone (lane 1) and coexpressed
with MHM2(Q218K) (lane 2), MHM2( 107-120,Q218K) (lane 3),
MHM2( 23-120,Q218K) (lane 4), and MHM2( 23-88,Q218K) (lane 5). (C)
Western blot analysis of PrP mutant protein that conserved the
hydrophobic core coexpressed with MHM2 and (D) conversion of MHM2 into
PrPSc when coexpressed with MHM2( 23-111,Q218K)
derivatives. Lanes: 1, mock transfection; 2, MHM2 alone; 3, MHM2 and
MHM2(Q218K); 4, MHM2 and MHM2( 23-111,Q218K). Apparent molecular
masses (in kilodaltons) based on migration of protein standards are
given to the left of the gels.
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As MHM2 PrP(

23-88,Q218K) was found to bind to protein X but with a
reduced degree of affinity, we enlarged this deletion
to residue 120. Earlier studies reported that PrP(121-231) is
an autonomously folding
unit of PrP (
18). Neither MHM2 PrP(

23-120)
nor MHM2
PrP(

23-120,Q218K) was converted into PrP
Sc in ScN2a
cells, as judged by the acquisition of protease resistance
(data not
shown). In cotransfection experiments, MHM2 PrP(

23-120,Q218K)
did
not inhibit the conversion of either full-length MHM2 PrP
(Fig.
5A and
B, lanes 4) or MHM2 PrP(

23-88) into PrP
Sc. Two
additional deletion mutations were also investigated with
respect to
inhibition of PrP
Sc formation. Neither MHM2
PrP(

107-120,Q218K) (Fig.
5A and B, lanes
3) nor MHM2
PrP(

23-88,

108-121,Q218K) inhibited the conversion
of MHM2 PrP
into PrP
Sc in ScN2a
cells.
Because dominant-negative inhibition was not observed with any of the
mutants described above, we asked if preservation of
the hydrophobic
core (PrP residues 112 to 125) (
22) could restore
binding to
protein X. To explore this issue, we constructed a
truncated PrP
molecule lacking residues 23 to 111 but preserving
the hydrophobic
core. The substitution Q218K was introduced. Cotransfection
of
PrP(

23-111,Q218K) and MHM2 PrP into ScN2a cells did not inhibit
the
formation of PrP
Sc (Fig.
5C and D, lanes 4). In view of
these results, we restored
residues 23 to 111 and deleted residues 112 to 145, which retained
the region of recombinant PrP known to be highly
structured, i.e.,
residues 146 to 231. We found that neither
PrP(

112-145) nor PrP(

112-145,Q218K)
was converted into
PrP
Sc in ScN2a cells (data not shown); moreover, neither
PrP(

112-145)
(Fig.
6, lanes 3 and 4)
nor PrP(

112-145,Q218K) inhibited the
conversion of wt MHM2
PrP
C into PrP
Sc (Fig.
6, lanes 5 and 6).

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|
FIG. 6.
The highly structured region (residues 146 to 231) of
PrP is insufficient for high-affinity binding to protein X. (A) Western
blot analysis of the coexpression of MHM2( 112-145) and
MHM2( 112-145,Q218K) with MHM2 in ScN2a cells and (B) conversion of
MHM2 PrPC into PrPSc when coexpressed with
mutant proteins after digestion with PK (20 µg/ml). Lanes: 1, mock
transfection; 2, MHM2; 3, MHM2 and MHM2( 112-145) at 10 µg; 4, MHM2
and MHM2( 112-145) at 20 µg; 5, MHM2 and MHM2( 112-145,Q218K) at
5 µg; 6, MHM2 and MHM2( 112-145,Q218K) at 20 µg; 7, MHM2 and
MHM2(Q218K). Apparent molecular masses (in kilodaltons) based on
migration of protein standards are given to the left of the gels.
|
|
From the foregoing data, we concluded that the highly structured region
of recombinant PrP consisting of helices A, B, and
C (
11,
22,
44) was insufficient for high-affinity binding
to protein X. We
also found that the addition of a variety of
additional residues failed
to produce mutant PrP molecules that
bind to protein X except for
PrP(

23-88), which is also called
PrP(89-231).
Octarepeats and dominant-negative phenotype.
Having determined
that PrP(
23-88) exhibits dominant-negative inhibition but at a
diminished level when assayed against full-length PrPC, we
explored the roles of residues between 23 and 88. We began by deleting
the five octarepeats resulting in PrP(
52-91). The octarepeats are of
considerable interest, since additional octarepeats cause inherited
prion disease (14, 34) and the His residues of these repeats
bind Cu2+ ions (4, 19, 33, 54, 55, 61).
Immunofluorescence microscopy showed that both PrP(
52-91) and
PrP(
52-91,Q218K) were expressed on the surfaces of N2a cells (Fig.
3D). In addition, both mutant PrPs were released from the cell surface
by PIPLC digestion. Although PrP(
52-91) is efficiently converted
into PrPSc in ScN2a cells (Fig. 1 and 7A and
B) as previously reported
(46), PrPC (
52-91,Q218K) was not
converted into PrPSc. To investigate further whether the
octarepeat region influences the binding of PrP to protein X, we
cotransfected ScN2a cells with MHM2 PrP(
52-91,Q218K) and wt MHM2
PrP. We found that PrP(
52-91,Q218K) impeded the conversion of both
MHM2 PrP(
52-91) and full-length MHM2 PrP into PrPSc in
ScN2a cells.

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|
FIG. 7.
Octarepeats of PrP and dominant-negative phenotype. (A
and B) Avidity of PrP( 52-91,Q218K) for protein X is as high as
full-length PrP(Q218K). Expression (A) and conversion (B) of
PrPC( 52-91) into PrPSc after PK treatment.
Lanes: 1, MHM2; 2, coexpression of MHM2 and MHM2(Q218K); 3, MHM2( 52-91); 4, MHM2( 52-91,Q218); 5, coexpression of
MHM2( 52-91) and MHM2( 52-91,Q218K); 6, coexpression of
MHM2( 52-91) and MHM2(Q218K). (C to E) Additional octarepeats (OR +6)
impede the conversion of both full-length MHM2 and MHM2(OR+6).
Coexpression of MHM2 or MHM2(OR+6) with mutant proteins (C) and after
PK treatment (D and E). Lanes: 1, MHM2; 2, MHM2 and MHM2(Q218K); 3, MHM2 and MHM2(OR+6); 4, MHM2 and MHM2(OR+6,Q218K); 5, MHM2(OR+6) and
MHM2(OR+6,Q218K); 6, MHM2(OR+6) and MHM2(Q218K). The gels were stained
with anti-PrP 3F4 MAb (A to D) or with anti-PrP RO73 antibody (E).
Apparent molecular masses (in kilodaltons) based on migration of
protein standards are given to the left of the gels.
|
|
Since deletion of the octarepeats did not alter the dominant-negative
phenotype, we asked if additional octarepeats might
appreciably
increase the inhibition displayed by PrP(Q218K). If
this were the case,
then additional octarepeats would provide
a mechanism whereby mutant
PrPs cause inherited human prion diseases.
Earlier studies showed that
PrP(OR+6) containing additional six
octarepeats was readily expressed
in N2a cells (
35) and converted
into PrP
Sc in
ScN2a cells (
46). In contrast to PrP(OR+6), PrP(OR+6,Q218K)
was not converted into PrP
Sc in ScN2a cells (Fig.
1 and
7C
to E). We also found that PrP(OR+6,Q218K)
impeded the conversion of
both MHM2 PrP(OR+6) and full-length
MHM2 PrP into PrP
Sc in
ScN2a
cells.
The dominant-negative phenotypes of PrP(

52-91,Q218K) and
PrP(OR+6,Q218K) seem to be similar to that of full-length PrP(Q218K).
From these findings, we conclude that the avidity of
PrP(

52-91,Q218K)
and PrP(OR+6,Q218K) for protein X is
indistinguishable from that
of full-length PrP(Q218K) when assayed in
ScN2a cells converting
full-length MHM2 PrP
C into
PrP
Sc.
N-terminal positive charges modulate dominant-negative inhibition
mediated by C-terminal residues.
From the foregoing results
comparing the dominant-negative phenotypes of PrP(
23-88,Q218K) and
PrP(
52-91,Q218K), we concluded that residues 23 to 51 influence the
affinity of PrP for protein X. To investigate the roles of the extreme
N-terminal residues, two truncated PrPs were produced: PrP(
32-80)
and PrP(
30-91). Both PrP(
32-80) and PrP(
30-91) were
efficiently converted into PrPSc (Fig. 1 and
8). Conversion of these mutant PrPs was
abolished in cotransfections with either truncated PrP carrying the
Q218K mutation. Immunofluorescence analysis of PrP(
32-80,Q218K)
expressed in N2a cells showed that it transports to the cell surface
(Fig. 3E). Treatment with PIPLC released PrP(
32-80,Q218K) from the external surfaces of the cultured cells. Cotransfection studies using
ScN2a cells indicated that either PrP(
32-80,Q218K) or
PrP(
30-91,Q218K) inhibited conversion of PrP(
32-80),
PrP(
30-91), and full-length MHM2 PrP into PrPSc (Fig. 1
and 9). Both PrP(
32-80,Q218K) and
PrP(
30-91,Q218K) seem to exhibit a greater degree of
dominant-negative inhibition than PrP(
23-88,Q218K). These findings
argue that the extreme N-terminal sequence
(23KKRPKP29) enhances the dominant-negative phenotype. This basic sequence is highly conserved in all species studied to date (1).

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FIG. 8.
N-terminal positive charges are required for the
dominant-negative phenotype. (A) Western blot analysis on the
expression (A) and conversion of truncated PrP molecules into
PrPSc after PK treatment (B and C). Lanes: 1, MHM2; 2, coexpression of MHM2 and MHM2(Q218K); 3, MHM2( 32-80); 4, coexpression of MHM2( 32-80) and MHM2( 32-80,Q218K); 5, MHM2( 30-91); 6, coexpression of MHM2( 30-91) and
MHM2( 30-91,Q218K); 7, PrP( 23-88); 8, PrP( 23-88) and
PrP( 23-88,Q218K). The gels were stained with anti-PrP 3F4 MAb (A and
B) or with anti-PrP RO73 antibody (C). Apparent molecular masses (in
kilodaltons) based on migration of protein standards are given to the
left of the gels.
|
|

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|
FIG. 9.
Western blot analysis on the dominant-negative
inhibition of truncated PrP mutants on the conversion of the
full-length MHM2 PrP protein. Expression of the different proteins in
ScN2a cells (A) and conversion of MHM2 into PrPSc after PK
digestion in the presence of truncated proteins (Q218K) that lack the
N-terminal domain (B and C). The conversion of MHM2 was specifically
monitored with MAb 3F4. Lanes: 1, MHM2; 2, MHM2 and MHM2(Q218K); 3, MHM2 and MHM2( 23-88,Q218K); 4, MHM2 and MHM2( 32-80,Q218K); 5, MHM2 and MHM2( 30-91,Q218K); 6, MHM2 and MHM2( 52-91,Q218K). The
gels were stained with anti-PrP 3F4 MAb (A and B) or with anti-PrP RO73
antibody (C). Apparent molecular masses (in kilodaltons) based on
migration of protein standards are given to the left of the gels.
|
|
 |
DISCUSSION |
The discovery that dominant-negative inhibition of
PrPSc formation is governed by a discontinuous epitope in
the C-terminal domain of PrPC has opened several new
approaches to studies of prions. First, this discovery explains the
apparent protection from CJD in people with a single allele encoding
PrP(K219) and from scrapie in sheep with a single allele encoding
PrP(R171) (21, 52, 62). Second, the discovery of this
epitope in conjunction with the results described here defines the
optimal ligands for both affinity purification and assay of protein X. Third, the dominant-negative phenotype argues that rational drug design
should be targeted to the site of interaction between PrPC
and protein X (V. Perrier, A. Wallace, K. Kaneko, S. B. Prusiner, and F. E. Cohen, unpublished data).
While all of the studies reported here were performed in ScN2a cells
and thus demand a note of caution, preliminary findings with Tg
mice are encouraging.
Tg(MoPrP,Q167R)FVB/Prnp0/0 mice remain
well for more than 250 days after inoculation with RML prions (V. Perrier, K. Kaneko, F. E. Cohen, and S. B. Prusiner, unpublished data). The level of transgene expression is similar to that
of non-Tg FVB mice which have incubation times of ~150 days with RML
prions (7). The
Tg(MoPrP,Q167R)FVB/Prnp0/0 mice are currently
being crossed with FVB mice to produce
Tg(MoPrP,Q167R)FVB/Prnp+/+ mice in order to
determine if they display dominant-negative inhibition of prion
replication. Similar experiments with mice expressing MoPrP(Q218K)
transgenes are also in progress.
Binding of PrPC to protein X.
The binding of
PrPC to protein X is likely to be accompanied by a
conformational change in PrP. We have designated this intermediate as
PrP* (9). The PrP*-protein X complex might represent the functionally active form of PrP. Considerable data argue that PrP is a
copper binding protein (4, 19, 33, 54, 55, 61). Whether PrP
binds copper in the extracellular milieu and protein X participates in
this process remains to be established.
Several lines of evidence presented here and in earlier studies suggest
that the PrP*-protein X complex is the substrate for
binding to
PrP
Sc. The PrP
Sc-PrP*-protein X complex is
converted through an as yet undefined
process by which PrP* is
converted into PrP
Sc and protein X is released
(
40). How PrP
Sc acts as a template in directing
the refolding of PrP* into a
nascent PrP
Sc molecule remains
to be established. Considerable evidence now
argues that each prion
strain represents a different conformation
of PrP
Sc
(
2,
37,
47,
48,
58).
The results of combined mutagenesis and structural studies indicate
that a discontinuous epitope in the C-terminal PrP domain
binds to
protein X (
22,
24). This epitope includes residues
214 and
218 from one side of helix C, and a loop structure defined
by residues
161 to 172. Selective substitutions at positions 167,
171, 214, and 218 prevented the conversion of the mutant proteins.
Substitution of basic
residues at position 167 or 218 produced
mutant PrPs that act as
dominant-negative inhibitors by diminishing
the conversion of wt
PrP
C into PrP
Sc. The same substitutions in
sheep and humans render them resistant
to scrapie and CJD, respectively
(
20,
51,
62).
In the study reported here, we present evidence that the
dominant-negative effects of substitutions at positions 171, 214,
and
218 are not additive and that modifications of charges in
three out of
the four residues involved in the binding to protein
X diminished or
abolished PrP
C-protein X complex formation. Therefore, we
focused our studies
on the peculiarity of the 218K substitution alone
to define more
precisely the domains of PrP that are required to bind
to protein
X.
Allosteric effects of N-terminal deletions.
The results
reported here demonstrate that N-terminal deletions profoundly alter
the binding of PrP to protein X. Unexpectedly, truncated
PrPC molecules containing the Q218K substitution with
deletion of residues 23 to 120, 107 to 120, or 23 to 111 did not
exhibit dominant-negative inhibition of PrPSc formation.
In a series of deletion mutagenesis studies, we found that the
N-terminal domain of PrP plays an important role in maintaining
the
integrity of the protein X binding site. Whether the N-terminal
PrP
domain modifies the binding of PrP to protein X by altering
the
structure of the binding epitope or whether it binds directly
to
protein X remains to be established. Sequence analysis revealed
that
the N-terminal region of PrP is highly conserved between
species, which
suggests an important structural role (
1). Although
PrP(

23-88) was converted into PrP
Sc molecules in ScN2a
cells and PrP 27-30 generated by limited proteolysis
of the N-terminal
67 amino acids of PrP
Sc is infectious, PrP(

23-88) was
not readily converted into PrP
Sc in
Tg(MHM2PrP,

23-88)
Prnp0/0 mice inoculated with
RML prions composed of full-length MoPrP
Sc (
56).
However, Tg(MHM2PrP,

23-88)
Prnp+/0 mice
hemizygous for
Prnpa were susceptible to RML
prions with incubation times much shorter
than those seen in
Prnp+/0 mice. An additional PrP deletion (of
residues 141 to 176) rendered
Tg(PrP106) mice expressing
PrP(

23-88,

141-176), composed of 106
amino acids, susceptible to
RML prions. Because half of the protein
X binding site in PrP106 has
been deleted, we considered the possibility
that PrP106 may not bind
protein X and that it assumes a PrP*-like
conformation without the aid
of protein X (
56).
In contrast to our results with Tg mice, other investigators have
reported that Tg(PrP,

32-88) and Tg(PrP,

32-93) mice are
susceptible to RML prions (
13,
53). In these Tg mice, the
nine N-terminal amino acids (KKRPKPGGW) of PrP were preserved.
Intrigued by the differences between our N-terminal PrP deletion
mice
and these Tg mice, we examined a series of N-terminal deletion
mutants
for conversion into PrP
Sc in ScN2a cells and for
dominant-negative inhibition of wt PrP
Sc formation.
Interestingly, deletion of the octarepeat sequences
(residues 52 to 91)
did not alter PrP
Sc formation and PrP(

52-91,Q218K)
exhibited dominant-negative inhibition
of wt PrP
Sc
formation. PrP(

52-91,Q218K) was a much more potent inhibitor
of wt
PrP
Sc formation than PrP(

23-88,Q218K) (Table
1). We also found that
an additional 22 residues could be deleted from the N terminus
with only a slight
diminution of the dominant-negative inhibition
of PrP
Sc
formation. That PrP(

30-91,Q218K) inhibited PrP
Sc
formation argues that the extreme N-terminal PrP residues KKRPKPG
modify the binding of PrP to protein X.
Prion replication.
The discovery that dominant-negative
inhibition of PrPSc formation is governed by a
discontinuous epitope in the C-terminal domain suggested that the
rate-limiting step in PrPSc formation is generally the
binding of PrPC to protein X (40). Although
protein X has not been isolated, the work presented here provide
additional evidence for the existence of this protein. Defining the
requirements for maximal binding of PrP to protein X should greatly
facilitate efforts to identify this protein. Interestingly, the four
positively charged residues (in bold type) in the sequence
KKRPKP at the extreme N terminus of PrP seem to
be responsible for the profound effect that the N terminus of PrP has
on the binding of PrP to protein X. Determining the process by which
these basic residues modify PrP binding to protein X is likely to be of
considerable importance in elucidating the mechanism of
PrPSc formation.
 |
ACKNOWLEDGMENTS |
This work was supported in part by grants from the National
Institutes of Health (NS14069, AG08967, AG02132, and AG10770), the
American Health Assistance Foundation, and the French Foundation as
well as by a gift from the G. Harold and Leila Y. Mathers Foundation. L.Z. was supported by a postdoctoral fellowship from the International Human Frontier Science Program.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Institute for
Neurodegenerative Diseases, Box 0518, University of California, San
Francisco, CA 94143-0518. Phone: (415) 476-4482. Fax: (415) 476-8386. E-mail: abbott{at}itsa.ucsf.edu.
 |
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Journal of Virology, May 2000, p. 4351-4360, Vol. 74, No. 9
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
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