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Journal of Virology, May 2000, p. 4207-4213, Vol. 74, No. 9
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
A Single Amino Acid Change in nsP1 Attenuates
Neurovirulence of the Sindbis-Group Alphavirus S.A.AR86
Mark T.
Heise,*
Dennis A.
Simpson,
and
Robert E.
Johnston
Department of Microbiology and Immunology,
The University of North Carolina at Chapel Hill, Chapel Hill, North
Carolina 27599
Received 8 October 1999/Accepted 11 February 2000
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ABSTRACT |
S.A.AR86, a member of the Sindbis group of alphaviruses, is
neurovirulent in adult mice and has a unique threonine at position 538 of nsP1; nonneurovirulent members of this group of alphaviruses encode
isoleucine. Isoleucine was introduced at position 538 in the wild-type
S.A.AR86 infectious clone, ps55, and virus derived from this mutant
clone, ps51, was significantly attenuated for neurovirulence compared
to that derived from ps55. Intracranial (i.c.) s55 infection resulted
in severe disease, including hind limb paresis, conjunctivitis, weight
loss, and death in 89% of animals. In contrast, s51 caused fewer
clinical signs and no mortality. Nevertheless, comparison of the virus
derived from the mutant (ps51) and wild-type (ps55) S.A.AR86 molecular
clones demonstrated that s51 grew as well as or better than the
wild-type s55 virus in tissue culture and that viral titers in the
brain following i.c. infection with s51 were equivalent to those of
wild-type s55 virus. Analysis of viral replication within the brain by
in situ hybridization revealed that both viruses established infection in similar regions of the brain at early times postinfection (12 to
72 h). However, at late times postinfection, the wild-type s55
virus had spread throughout large areas of the brain, while the s51
mutant exhibited a restricted pattern of replication. This suggests
that s51 is either defective in spreading throughout the brain at late
times postinfection or is cleared more rapidly than s55. Further
evidence for the contribution of nsP1 Thr 538 to S.A.AR86
neurovirulence was provided by experiments in which a threonine residue
was introduced at nsP1 position 538 of Sindbis virus strain TR339,
which is nonneurovirulent in weanling mice. The resulting virus, 39ns1,
demonstrated significantly increased neurovirulence and morbidity,
including weight loss and hind limb paresis. These results demonstrate
a role for alphavirus nonstructural protein genes in adult mouse neurovirulence.
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INTRODUCTION |
The outcome of experimental Sindbis
virus infection is dependent on both the genetics of the virus and the
age of the rodent host. In suckling mice, Sindbis virus infection
results in a shock-like disease with high levels of proinflammatory
cytokines and 100% mortality in the absence of encephalitis (37,
38). Introduction of attenuating mutations into the Sindbis virus
genome abrogates the shock-like disease, extends the average survival
time (AST), and, depending on the degree of attenuation, decreases
mortality. With the less virulent Sindbis strains, an encephalitis is
evident (15). In contrast to infection of suckling mice,
animals greater than 10 to 14 days of age are completely resistant to
Sindbis virus and the group of alphaviruses most closely related to it, even when virus is administered by the intracranial (i.c.) route (reviewed in reference 12). S.A.AR86 is a notable
exception in that it remains neurovirulent in adult animals
(33).
Sequence comparisons have placed the Sindbis-group viruses into two
categories (28). One subgroup contains the AR339 strain of
Sindbis, which was originally isolated in Egypt (36); while the second subgroup includes S.A.AR86 and GirdwoodS.A., which were
isolated in South Africa (25, 33, 42); and Ockelbo, which
was identified in Sweden (34). Of the viruses within
the second subgroup, only S.A.AR86 is neurovirulent in weanling and adult mice, causing 90 to 100% mortality in mice of any age
(33, 42). The existence of adult neurovirulent and
nonneurovirulent strains makes Sindbis-group viruses particularly
useful for studying alphavirus neurovirulence. The complete nucleotide
sequence has been obtained for the nonneurovirulent viruses AR339
(29), Ockelbo (32), and GirdwoodS.A.
(33), as well as S.A.AR86 (33). This allows
identification of changes which are unique to the neurovirulent virus
by direct comparison of the nucleotide and amino acid sequences. Furthermore, full-length infectious cDNA clones exist for S.A.AR86, as
well as nonneurovirulent strains, such as TR339 (14).
Therefore, the contribution of single-amino-acid loci to the adult
neurovirulence phenotype can be evaluated by substituting specific
codons from the nonneurovirulent virus into the neurovirulent virus and
vice versa.
Previous studies of adult neurovirulence of Sindbis-group viruses have
utilized NSV, a strain of Sindbis isolated after alternating i.c.
passage of AR339 in suckling and weanling mice (7). The i.c.
inoculation of 3- to 4-week-old mice with NSV results in 100%
mortality, but unlike S.A.AR86, NSV causes decreased mortality in older
mice (7). Studies with NSV found that the E1 and E2 glycoproteins play an important role in adult neurovirulence
(24). Of particular importance is a histidine at position 55 of the E2 glycoprotein, which is essential for NSV neurovirulence
(24). The mechanism by which E2 His 55 and other
determinants within the glycoproteins contribute to neurovirulence has
not been completely determined, although viruses containing E2 His 55 exhibit increased replication in cultured cells and are able to
overcome bcl2 expression to kill mature neurons (11, 21, 22,
39). Though the viral glycoproteins certainly play an important
role in adult neurovirulence, it is clear that other regions of the
viral genome also contribute to this phenotype. The viral 5'
untranslated region modulates the neurovirulence of the SVNI strain of
Sindbis virus in adult rats (16). Chimeric viruses, in which
the glycoproteins are derived from the NSV strain and the
nonstructural proteins are derived from a nonneurovirulent strain,
exhibit only 44% mortality in 4-week-old mice, while NSV causes 100%
mortality (24). Furthermore, S.A.AR86, which is fully
neurovirulent in adult mice regardless of the animal's age, does not
encode a histidine at position 55 of the E2 glycoprotein, suggesting
that determinants other than E2 His 55 can affect the neurovirulence
phenotype (33).
The contribution of the viral nonstructural proteins to neurovirulence
has largely gone unstudied. Alphaviruses encode four nonstructural
proteins, which are rapidly expressed after infection and comprise the
viral replicase (reviewed in reference 35). With one
exception, the nonstructural proteins of the Sindbis-group viruses are
translated from the genomic RNA as two polyproteins, P123 and P1234.
Termination at an opal termination codon between nsP3 and nsP4 results
in production of P123, while translational readthrough to nsP4 results
in P1234 (reviewed in reference 35). The exception
to this rule is S.A.AR86, which encodes a cysteine rather than the opal
termination codon (33) and produces only the P1234
polyprotein. These polyproteins are then processed into intermediate
cleavage products and the individual nonstructural proteins by a
papain-like thiol protease, which is located in the C-terminal half of
nsP2 (reviewed in reference 35). Each of the
nonstructural proteins is required for efficient RNA synthesis. Specific functions have been assigned to nsP1, nsP2, and nsP4. nsP1
acts as both a methyltransferase and guanyltransferase (27, 31), while nsP2 is thought to act as an RNA helicase and encodes the protease responsible for processing of the nonstructural
polyprotein (4, 6, 10, 35). nsP4 acts as the core RNA
polymerase (9, 13, 35). No specific function has been
assigned to nsP3 (reviewed in reference 35),
although the finding that nsP3 is a phosphoprotein (23)
suggests a possible regulatory role. In addition to the individual
nonstructural proteins, the polyprotein precursor, P123, as well as the
intermediate cleavage products, plays a role in regulating viral RNA
synthesis (reviewed in reference 35).
In this study, we report the identification of a single amino acid at
position 538 within the nsP1 protein that plays an important role in
S.A.AR86 neurovirulence for adult mice. S.A.AR86 contains a unique
threonine at nsP1 538, while the nonneurovirulent Sindbis-group viruses
encode an isoleucine. Conversion of the threonine to isoleucine in
S.A.AR86 resulted in attenuation of neurovirulence in adult mice. The
mutant S.A.AR86 clone grew as well as or better than the wild-type
virus both in vivo and in vitro. However, the mutant displayed a defect
in spreading throughout the brain at late times during infection.
Further evidence for the contribution of nsP1 Thr 538 to neurovirulence
was provided by the introduction of a threonine codon at nsP1 538 of a
nonneurovirulent Sindbis-group virus. This resulted in a partially
neurovirulent virus which caused significantly more disease in 18- to
21-day-old mice.
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MATERIALS AND METHODS |
Viruses and virus stocks.
Names of plasmids containing viral
cDNA have the prefix "p," while virus derived from the clone does
not have the "p" designation; i.e., s55 denotes virus derived from
the plasmid ps55. Clone ps55 represents a fully virulent infectious
clone of S.A.AR86, which has been described previously (33).
Virus derived from this clone exhibits all of the biologic
characteristics of the natural S.A.AR86 isolate (33, 42).
Clone ps51 represents an intermediate sequence used in the construction
of the fully neurovirulent S.A.AR86 clone ps55 (33). ps51
differs from clone ps55 at a single nucleotide (position 1672), where
ps55 has cytidine and ps51 has thymidine. This nucleotide difference
results in a single amino acid change at position 538 of nsP1, where
ps51 encodes an isoleucine and ps55 encodes a threonine found in
natural S.A.AR86 isolates (33). Clone pTR339 represents a
consensus sequence clone based on the original Sindbis virus AR339
strain, in which cell culture-derived mutations have been corrected
(14, 26). Clone p39ns1 was constructed by replacing the
thymidine at position 1672 of pTR339 with cytidine by PCR megaprimer
mutagenesis (30). This resulted in p39ns1 encoding a
threonine at nsP1 position 538, rather than the isoleucine found in
pTR339. Introduction of the mutation was confirmed by sequencing at the
University of North Carolina at Chapel Hill Automated DNA Sequencing
Facility with a model 373A DNA sequencer (Applied Biosystems).
Virus stocks were made in the following manner. Plasmids ps55 and ps51
were linearized with XbaI (New England Biolabs), while pTR339 and p39ns1 were linearized with XhoI (New England
Biolabs). Full-length transcripts were produced with SP6 specific
Maxiscript in vitro transcription kits (Ambion). Transcripts were
electroporated into BHK-21 cells grown in minimal essential medium
(10% fetal calf serum [Gibco], 10% tryptose phosphate broth
[Sigma], 1% glutamine [Biofluids]). Supernatants were harvested
and aliquoted 24 to 27 h after electroporation, and virus was
titrated on BHK-21 cells as previously described (33).
Animal studies.
Specific-pathogen-free female CD-1 mice were
obtained from Charles River Breeding Laboratories (Raleigh, N.C.).
Animal housing and care were in accordance with all University of North
Carolina at Chapel Hill and Institutional Animal Care and Use Committee guidelines. Six-week-old mice were anesthetized with Metofane (Schering-Plough) prior to i.c. inoculation with 500 or 103
PFU of s55 or s51 diluted in phosphate-buffered saline (PBS [pH 7.4]), supplemented with 1% donor calf serum (DCS) (Gibco). Similar results were obtained with either dose of virus. Mock-infected mice
received diluent alone. For experiments with TR339 and 39ns1, 18- to
21-day-old mice were used. Mice were scored daily for clinical signs by
visual inspection and body weight. Severely ill animals were
euthanized. In separate experiments, mice were anesthetized with
Metofane at various times postinfection, sacrificed by exsanguination, and perfused with PBS. The left hemisphere of the brain was then removed for titration of virus load by plaque assay. Alternatively, following exsanguination, mice were perfused with 4% paraformaldehyde, and the entire brain was removed for in situ hybridization studies, as
previously described (2).
Cell culture.
BHK-21 cells were maintained at 37°C in
alpha minimal essential medium (Gibco) supplemented with 10% DCS, 10%
tryptose phosphate broth, and 0.29 mg of L-glutamine per
ml. Plaque assays of virus stocks and in vitro growth curve experiments
were performed as previously described (33). For in vivo
growth curves, mice were sacrificed at various times postinfection and
perfused with PBS (pH 7.4), and the left hemisphere of the brain was
suspended as a 25% homogenate in PBS (pH 7.4) supplemented with 1%
DCS and Ca2+-Mg2+ Plaque assays were then
performed as described previously (33).
In vitro growth curves were determined as follows. BHK-21 cells were
plated at 105 cells/well in 24-well plates (Sarstedt) for
14 to 16 h at 37°C. Medium was removed, and wells were infected
with virus in triplicate at a multiplicity of infection (MOI) of 5.0. Cells were incubated at 37°C for 1 h. Wells were then washed
three times with 0.5 to 1 ml of room temperature PBS supplemented with
1% DCS and Ca2+-Mg2+. One milliliter of growth
medium was then added to each well, and cells were incubated at 37°C.
Samples of supernatant were removed at various time points, with an
equal volume of fresh medium added to maintain a constant volume within
each well. Samples were frozen at
80°C until analysis by plaque assay.
In situ hybridization.
Hybridizations were performed with a
35S-UTP-labeled S.A.AR86-specific riboprobe derived from
pDS-45. Clone pDS-45 was constructed by amplifying a 707-bp fragment
from ps55 by PCR with primers 7241 (5'CTGCGGCGGATTCATCTTGC-3')
and SC-3 (5'-CTCCAACTTAAGTG-3'). The resulting 707-bp
fragment was purified by using Gene Clean (Bio 101, Inc., La Jolla,
Calif.), digested with HhaI, and cloned into the
SmaI site of pSP72 (Promega). Clone pDS-45 was linearized with EcoRV and transcribed in vitro with a Maxiscript SP6
transcription kit (Ambion) in the presence of 35S-UTP to
yield a riboprobe approximately 500 nucleotides in length, of which 445 nucleotides were complementary to S.A.AR86 nucleotides 7371 to 7816. This includes the last 187 nucleotides of the nsP4 gene, the 26S
promoter region, and the first 209 nucleotides of the capsid gene. A
riboprobe specific for the influenza virus strain PR-8 hemagglutinin
gene was used as a control probe for nonspecific binding
(3). The S.A.AR86 riboprobe was hybridized to tissues from
PBS-inoculated mice as an additional control for nonspecific binding.
The in situ hybridizations were performed according to the method of
Charles et al. (2) by using 25 µl of probe/slide at 5 × 104 cpm/µl.
 |
RESULTS |
A single amino acid change in nsP1 attenuates a S.A.AR86 infectious
clone for neurovirulence in adult mice.
It is well established
that changes within the 5' untranslated region and glycoprotein genes
can affect alphavirus virulence (5, 16, 17, 24, 26).
However, the role of alphavirus nonstructural proteins in
neurovirulence has not been evaluated. Identification of molecular
determinants of S.A.AR86 neurovirulence in adult mice was facilitated
by the existence of molecular clones derived from a natural isolate of
S.A.AR86 (33). One clone, ps55, is identical in coding
sequence to the natural S.A.AR86 isolate. Furthermore, virus derived
from ps55 exhibits all of the phenotypic characteristics of natural
S.A.AR86 isolates, including neurovirulence in adult mice
(33). Additional S.A.AR86 clones, containing mutations at
various sites within the nonstructural genes, were made during the
construction of the wild-type ps55 clone (D. A. Simpson and
R. E. Johnston, unpublished observations). One mutant, clone ps51,
was of particular interest. Clone ps51 is isogenic with ps55, except
for a single amino acid change of threonine to isoleucine at position
538 of nsP1. This change was striking, since isoleucine at nsP1 538 is
found in the nonneurovirulent Sindbis-group viruses (29, 32,
33), including GirdwoodS.A. and Ockelbo, which are closely
related to S.A.AR86, but are not neurovirulent in adult animals
(25, 32, 33; D. A. Simpson and R. E. Johnston, unpublished observations). Furthermore, the threonine at
position 538 represents the only amino acid change within nsP1 that is
unique to S.A.AR86 as compared to the nonneurovirulent Sindbis-group viruses.
Neurovirulence of s51 and s55 was evaluated by i.c. infection of
6-week-old female CD-1 mice. An i.c. infection with 500 PFU of s55
caused severe disease, including loss of 30 to 40% of body weight,
moderate to severe hind limb paresis, conjunctivitis, and limbic
disorders, such as loss of balance and tremors (Fig. 1 and Table
1). Similar results were found when mice
were infected with 1,000 PFU of s55. Furthermore, 89% of mice infected
with either 500 or 1,000 PFU of s55 died, with an AST of 7.0 ± 2.0 days (Table 1). In contrast, mice infected with either 500 or 1,000 PFU of s51 exhibited less severe disease signs and no mortality (Fig. 1
and Table 1). s51 caused a 20 to 25% drop in body weight, conjunctivitis in only 1 of 15 animals, no loss of motor control, and a
milder degree of paresis than s55 (Fig. 1 and Table 1). s51-infected
mice eventually recovered the lost body weight, although paresis
persisted in some animals for up to 3 months (data not shown).
Therefore, changing the threonine found in wild-type S.A.AR86 (clone
s55) to isoleucine found in the nonneurovirulent Sindbis-group viruses
resulted in attenuation of S.A.AR86 neurovirulence.

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FIG. 1.
Virus derived from S.A.AR86 clone ps51 causes less
morbidity and mortality than virus derived from the wild-type clone
ps55. Six-week-old female CD-1 mice were infected i.c. with 500 PFU of
the wild-type s55 or the mutant s51. (A) Mice were monitored for weight
loss as an indicator of morbidity. Mouse weight is plotted as
percentage of starting body weight over time. Data represent the mean
percentage from five animals per group (s55 and s51) or two animals
(mock). , s51-infected mice; , s55-infected mice; +,
mock-infected mice. Error bars represent the standard error. The data
shown represent results from one of three comparable experiments. (B)
Percentage of mice surviving over time after s51 or s55 infection.
There were 7 mock-infected mice, 15 s51-infected mice, and 19 s55-infected mice. The data shown are pooled from three separate
experiments.
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In vitro and in vivo growth kinetics of s51 and s55.
It was
possible that the attenuation of s51 reflected a general defect in
replication compared to the wild-type s55 virus. Therefore, the ability
of the two viruses to grow in BHK-21 cells was compared. BHK cells were
infected with either virus at an MOI of 5.0, and virus titers in the
supernatant were evaluated over time. Both viruses grew to roughly
equivalent titers with the same kinetics (Fig.
2). In fact, s51 titers were always as high as or higher than s55 titers. At 24 h postinfection, s55 plaques had an average diameter of 0.36 ± 0.1 mm, while s51
plaques had an average diameter of 0.51 ± 0.17 mm (P < 0.001; Student's t test, two tailed). These results
suggest that s51 grows at least as well as s55 in vitro and may
actually have a slight growth advantage.

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FIG. 2.
s51 and s55 grow at equivalent rates in vitro. BHK-21
cells were infected in triplicate with the viruses s51 ( ) and s55
( ) at an MOI of 5.0. After 1 h of infection at 37°C, cells
were washed three times with room temperature PBS (1% DCS), and 1 ml
of growth medium was placed on the cells. One hundred microliters of
supernatant was removed for titration by plaque assay at the indicated
times. At the time of harvest, the sample volume removed was replaced
with fresh media. Samples were titrated by plaque assay on BHK-21
cells. The data shown are from one of three representative experiments.
Each data point represents the mean titer ± standard error.
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Since s51 grew as well as or better than s55 in vitro, the ability of
the two viruses to replicate within the brains of infected animals was
evaluated. Six-week-old female CD-1 mice were inoculated i.c. with
103 PFU of s55 or s51, and the levels of infectious virus
within the brain were assessed by plaque assay at intervals ranging
from 3 to 144 h postinfection. Similar to the in vitro growth
curves, s51 grew to levels which were equivalent to those of s55 in the brain (Fig. 3). These results demonstrate
that attenuation of s51 cannot be explained by a simple defect in viral
replication, either in vitro or within the infected brain.

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FIG. 3.
s51 and s55 grow with equivalent kinetics in the brains
of infected mice. Six-week-old female CD-1 mice were infected i.c. with
103 PFU of s51 or s55. Mice were sacrificed by
exsanguination at 12, 24, 48, 72, 96, 120, and 144 h postinfection
and perfused with PBS (pH 7.4). The left hemisphere of each brain was
removed and placed in three volumes of PBS (1% DCS,
Ca2+-Mg2+). Samples were frozen and thawed
before homogenization and titration by plaque assay on BHK-21 cells.
Each data point represents the mean titer ± the standard error.
, s51; , s55. n = 6 to 12 animals for each time
point from three pooled experiments.
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Localization of s51 and s55 infection within the brain at early and
late times postinfection.
Since s51 was attenuated for
neurovirulence, but grew in brain tissue to titers equivalent to that
of wild-type s55, the neuropathology of these viruses was evaluated at
various times postinfection. Six-week-old CD-1 mice were inoculated
i.c. with 103 PFU of s55 or s51. Mice were sacrificed at
times ranging from 12 to 144 h postinfection, at which point, they
were perfused with 4% paraformaldehyde, and brain sections were
evaluated for the presence of viral RNA by in situ hybridization with
S.A.AR86-specific riboprobes. Both viruses exhibited similar patterns
of replication at early times (12 to 72 h) postinfection. Focal
areas of viral infection were observed within the hippocampus at 12 to
24 h postinfection for both s51 and s55 (Fig.
4A and B). However, at late times
postinfection, the two viruses exhibited dramatically different
patterns of growth in the brain. By 144 h postinfection, s55 had
spread throughout the brain, with large areas of in situ signal
particularly prevalent in the cortex (Fig. 4E). s51 infected the same
regions of the brain as s55; however, areas of s51 infection remained
more focal than s55-infected areas (Fig. 4F). These results suggest
that s51 and s55 established infection in a similar manner. However, s51 was prevented from spreading beyond focal areas of infection, while
the wild-type s55 virus spread throughout the brain at late times
postinfection. Alternatively, both viruses may spread throughout the
brain equivalently, but s51 may have been cleared from the brain, while
s55 infection progressed until the death of the host.

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FIG. 4.
In situ hybridization to localize sites of infection by
s55 or s51. Six-week-old female CD-1 mice were infected i.c. with
103 PFU of s51 (B, D, and F) or s55 (A, C, and E). At 12, 24, 48, 72, 96, 120, and 144 h postinfection, mice were
exsanguinated and perfused with 4% paraformaldehyde in PBS (pH 7.4).
Brains were divided sagitally down the midline, embedded in paraffin,
and sectioned at 5 µm/section. Sections were subjected to in situ
hybridization with riboprobes specific for S.A.AR86. Nonspecific
binding controls consisted of sections from mock-infected mice probed
with the S.A.AR86-specific riboprobe or sections from infected mice
probed with a riboprobe specific for influenza virus strain PR/8
hemagglutinin. No specific signal was observed with either of these
control groups. Shown are representative sections at 24 (A and B), 72 (C and D), and 144 (E and F) h. There were three mice per group per
time point. The data shown are from one of two comparable
experiments.
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Introduction of a threonine at nsP1 538 of a nonneurovirulent
virus.
The comparison of s55 and s51 strongly suggested that nsP1
Thr 538 was associated with neurovirulence in adult mice. This hypothesis was tested further by introducing nsP1 Thr 538 into Sindbis
virus clone TR339 (14, 26). The resulting virus, 39ns1, was
viable as determined by growth in tissue culture, with 39ns1 growing at
a similar rate to the wild-type TR339 virus (Fig.
5). At 24 h postinfection TR339
plaques had an average diameter of 0.61 ± 0.15 mm, while 39ns1
plaques had an average diameter of 0.37 ± 0.07 mm (P < 0.001, Student's t test, two tailed). Following i.c. inoculation with 103 PFU of TR339, 18- to 21-day-old
mice exhibited only mild disease signs, as shown by a slight lag in
weight gain compared to mock-infected animals (Fig.
6). Three out of 18 TR339-infected mice
did show signs of mild hind limb paresis involving weakness in one hind limb, while the remaining 15 mice exhibited no signs of paresis. In
contrast, 39ns1 infection led to a more severe disease, with mice
exhibiting a transient loss in body weight (Fig. 6), as well as paresis
in one or both hind limbs in 21 of 22 infected animals. Furthermore, 3 of 22 39ns1-infected mice succumbed to infection with an AST of 8.3 days. The ability of threonine at nsP1 538 to cause increased
neurovirulence in a normally nonneurovirulent genetic background
strongly suggests that nsP1 Thr 538 is a major determinant of S.A.AR86
neurovirulence in adult mice. However, since 39ns1 did not cause 100%
mortality in infected mice, it is likely that other determinants in the
S.A.AR86 genome also contribute to the adult neurovirulence phenotype.

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FIG. 5.
In vitro growth kinetics of the TR339 and 39ns1 viruses.
BHK-21 cells were infected in triplicate at an MOI of 5.0 with either
TR339 or 39ns1. Infection was performed as in Fig. 2. Supernatant was
sampled at the indicated times postinfection, and virus levels were
titrated on BHK-21 cells by plaque assay. , TR339; , 39ns1. The
data shown are from one of three comparable experiments.
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FIG. 6.
39ns1 but not TR339 infection causes morbidity as
defined by weight loss in 18-day-old mice. Eighteen-day-old mixed
groups of male and female CD-1 mice were infected i.c. with
103 PFU of either TR339 or 39ns1. Mice were weighed daily
as an indicator of virus-induced morbidity. Mouse weight is plotted as
a percentage of starting body weight over time. The data represent the
mean percentage from five (TR339 and 39ns1) or four (mock) animals per
group. , TR339-infected mice; , 39ns1-infected mice; +,
mock-infected mice. Error bars represent the standard error. The data
shown represent one of four comparable experiments with 18- to
21-day-old mice.
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DISCUSSION |
The results presented here are relevant not only to the
neurovirulence of Sindbis-group alphaviruses in adult mice, but may have general application to the pathogenesis of arbovirus-mediated encephalitis. Reciprocal genetic changes were used to demonstrate that the amino acid residue at nsP1 538 is an important determinant of
neurovirulence in the adult mouse model. In one case, the nsP1 538 residue characteristic of nonneurovirulent Sindbis viruses was
substituted for the wild-type residue in a neurovirulent virus, S.A.AR86. The result was a dramatic decrease in the neurovirulence of
S.A.AR86. In the reciprocal experiment, the S.A.AR86 residue was
introduced into the Sindbis background by using the pTR339 clone,
resulting in a significant increase in the neurovirulence of this virus
for older animals. These results demonstrate that nsP1 538 plays an
important role in the adult neurovirulence phenotype of S.A.AR86 and
provide direct evidence that the viral nonstructural genes can
contribute to alphavirus neurovirulence.
The neurovirulent NSV strain replicates to higher titers within the
brain than nonneurovirulent viruses (11, 40), raising the
possibility that s51 was attenuated due to a general decrease in
replication within the central nervous system or an inability to
replicate effectively within certain cell types or regions of the
brain. However, s51 and s55 grew to similar levels within the brain
(Fig. 3). Furthermore, while in situ hybridization for viral
transcripts did not allow detailed identification of individual cell
types, s51 and s55 appeared to replicate within similar regions and
cell types within the brain (Fig. 4). At early times postinfection, cells within the hippocampus were infected, while both viruses spread
to other regions of the brain in a similar manner during early and
intermediate times postinfection (Fig. 4). It was only at late stages
of the disease that s51 differed greatly from s55. By day 5 postinfection, s51 and s55 replication was observed in the same regions
of the brain. However, s55 infected large areas, while s51 was
restricted to focal areas of replication within these regions (Fig. 4).
It is interesting to note that while significant differences between
s51 and s55 replication were observed within the brain at late times
postinfection by in situ hybridization (Fig. 4), the plaque assay
showed similar levels of s51 and s55 within the brain at all time
points assayed (Fig. 3). However, while viral titers measured by plaque
assay were falling for both viruses by day 5 postinfection, in situ
hybridization clearly showed increased levels of s55 signal
within the brain at day 5. This may reflect the production of
anti-S.A.AR86 antibody by the infected animals at late times
postinfection. The presence of antibody might decrease the amount of
virus within the brain that was detectable by plaque assay, while not
affecting intracellular viral replication.
The S.A.AR86 nonstructural proteins are produced as a single
polyprotein, which is cleaved to produce the individual nonstructural proteins, as well as cleavage intermediates, that comprise the viral
RNA replicase. nsP1 position 538 lies within the cleavage site between
nsP1 and nsP2, and changes within this region may affect processing of
the nonstructural proteins (reviewed in reference 35). With this in mind, our laboratory is currently
investigating the effects of Thr or Ile at nsP1 538 on the cleavage
kinetics of the viral nonstructural protein precursor P1234. Alteration in nonstructural protein cleavage could have several downstream effects
that alter neurovirulence. Given the role that different ratios of the
nonstructural protein precursors, cleavage intermediates, and mature
nonstructural proteins have in regulating viral RNA synthesis
(18-20), it is possible that changing the threonine to isoleucine at this position might have a positive or negative effect on
viral RNA replication and viral growth. In vitro and in vivo growth
curves demonstrated that s51 grew at a similar rate to virus derived
from the wild-type s55 clone (Fig. 2 and 3), while 39ns1 and TR339 also
grew at similar rates. However, it is still possible that the presence
of Ile or Thr at nsP1 538 altered viral RNA synthesis without overtly
affecting viral yield. In support of this, s51(nsP1 538 Ile) plaques
were larger than those of s55 (nsP1 538 Thr), while 39ns1 (nsP1
538 Thr) produced smaller plaques than TR339 (nsP1 538 Ile).
Experiments are currently under way to evaluate the effects of Thr or
Ile at nsP1 538 on synthesis of the viral negative strand, positive
strand, and subgenomic RNAs. Alternatively, the presence of Thr versus
Ile at nsP1 538 might alter the interaction of nsP1 or one of its
precursors with host cell factors, which could have downstream effects
on survival of the infected cell or induction of the antiviral immune
response. Precedence for this with Sindbis-group viruses is provided by the ability of histidine at position 55 of the E2 glycoprotein to
overcome bcl-2-mediated protection of cells from virus-induced apoptosis in vitro (41). Furthermore, changes in the 3A
protein of foot-and-mouth disease virus affect the ability of the virus both to replicate in bovine cells and to cause disease in cattle (1). Therefore, further analysis of whether s51 and s55
differ in their ability to kill neurons or other cell types, as well as
the in-depth characterization of the antiviral immune response following infection with either s51 or s55, may provide insight into
the mechanism(s) by which nsP1 538 contributes to neurovirulence.
There is precedent in nature for alphavirus genes other than those
coding for the glycoproteins contributing to neurovirulence. Western
equine encephalitis virus (WEE) is thought to have originated through a
recombination event between Eastern equine encephalitis virus (EEE) and
a Sindbis-like virus (8). This resulted in the glycoproteins
of WEE being derived from the Sindbis-like virus and the nonstructural
and capsid genes from EEE. Since Sindbis-group viruses are not
associated with encephalitis in humans, this suggests that the
molecular determinants of WEE neurovirulence might map to the
EEE-derived sequences in the nonstructural and capsid genes. Further
evaluation of this possibility may shed additional light on viral
determinants of alphavirus neurovirulence.
 |
ACKNOWLEDGMENTS |
M.T.H. and D.A.S. contributed equally to this work.
This research was funded by NIH research grant RO1 AI22186. M.T.H. was
supported by an institutional NIH postdoctoral training grant (T32
AI07151) and an NIH postdoctoral fellowship (F32 AI10146).
We thank William Klimstra and Kate Ryman for assistance in engineering
the virus clone p39ns1. Kristen Bernard provided assistance in
evaluating clinical signs in infected mice. We thank the entire Johnston laboratory for helpful discussion of this project. Cherice Connor, Michael Hawley, Jacqueline Bailey, and Dwayne Muhammed provided
excellent technical support with cell culture.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Microbiology and Immunology, Campus Box 7290, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599. Phone: (919) 966-4026. Fax: (919) 962-8103. E-mail: heisem{at}med.unc.edu.
Present address: Lineberger Comprehensive Cancer Center, The
University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.
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