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Journal of Virology, May 2000, p. 4146-4154, Vol. 74, No. 9
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Mutations in the 2C Region of Poliovirus
Responsible for Altered Sensitivity to Benzimidazole
Derivatives
Hiroyuki
Shimizu,1
Masanobu
Agoh,2
Yumi
Agoh,2
Hiromu
Yoshida,1
Kumiko
Yoshii,1
Tetsuo
Yoneyama,1
Akio
Hagiwara,1 and
Tatsuo
Miyamura1,*
Department of Virology II, National Institute
of Infectious Diseases, Musashimurayama-shi, Tokyo
208-0011,1 and Central Research
Laboratories, Maruishi Pharmaceutical Co., Ltd., Tsurumi-ku, Osaka
538,2 Japan
Received 13 December 1999/Accepted 9 February 2000
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ABSTRACT |
MRL-1237, [1-(4-fluorophenyl)-2-(4-imino-1,4-dihydropyridin-1-yl)
methylbenzimidazole hydrochloride], is a potent and selective inhibitor of the replication of enteroviruses. To reveal the target molecule of MRL-1237 in viral replication, we selected spontaneous MRL-1237-resistant poliovirus mutants. Of 15 MRL-1237-resistant mutants
obtained, 14 were cross-resistant to guanidine hydrochloride (mrgr), while 1 was susceptible (mrgs).
Sequence analysis of the 2C region revealed that the 14 mrgr mutants contained a single nucleotide substitution
that altered an amino acid residue from Phe-164 to Tyr. The
mrgs mutant, on the other hand, contained a substitution of
Ile-120 to Val. Through the construction of a cDNA-derived mutant, we
confirmed that the single mutation at Phe-164 was really responsible
for the reduced susceptibility to MRL-1237. MRL-1237 inhibited
poliovirus-specific RNA synthesis in HeLa cells infected with a wild
strain but not with an F164Y mutant. We furthermore examined the effect
of mutations of the 2C region on the drug sensitivity of cDNA-derived
guanidine-resistant and -dependent mutants. Two guanidine-resistant
mutants were cross-resistant to MRL-1237 but remained susceptible to
another benzimidazole, enviroxime. Either MRL-1237 or guanidine
stimulated the viral replication of two guanidine-dependent mutants,
but enviroxime did not. These results indicate that MRL-1237, like
guanidine, targets the 2C protein of poliovirus for its antiviral effect.
 |
INTRODUCTION |
Poliovirus is a member of
the family Picornaviridae, containing a positive-sense,
single-stranded RNA as a viral genome. The genome encodes a single
precursor polyprotein which is eventually cleaved to four structural
and seven nonstructural proteins (58). The structural capsid
proteins of picornaviruses are located at the amino-terminal P1 region
of the polyprotein. The remainder contains viral nonstructural
proteins, including two proteases (2Apro and
3Cpro), an RNA-dependent RNA polymerase
(3Dpol), and several other proteins essential for viral RNA
synthesis. In poliovirus-infected cells, nonstructural proteins 2B, 2C,
3A, 3B, and 3D and their precursors are associated with a specific structure of virus-induced cytoplasmic membranous vesicles, the so-called replication complex (13, 22), and implicated in viral RNA synthesis together with viral RNA and some cellular proteins
(13, 14, 17, 22, 44, 61, 64, 65, 73).
The 2C protein of picornaviruses contains conserved nucleoside
triphosphate (NTP)-binding and RNA helicase motifs in its middle region
(19, 28-31). Genetically manipulated mutations in the NTP-binding motif of the poliovirus 2C protein abolished viral replication and RNA synthesis (47, 70). The replication of viruses with such mutations in the NTP-binding motif was poorly complementated in trans (71). These results
indicate the functional significance of the NTP-binding motif in viral
replication. A recombinant poliovirus 2C (or precursor 2BC) protein
fused with maltose-binding protein (MBP), MBP-2C, was expressed in
Escherichia coli and was demonstrated to have both ATPase
and GTPase activities (57). The ATPase activity of partially
purified recombinant 2C protein of poliovirus was also detected with a
baculovirus expression system (46). However, no detectable
RNA helicase activity of the 2C protein has been demonstrated. The
purified MBP-2C could bind to a single-strand RNA (55-57),
and purified histidine-tagged 2C specifically bound to 3'-terminal
sequences of negative-strand viral RNA (8).
On the other hand, recombinant poliovirus 2C and 2BC proteins expressed
in human cells induced membrane rearrangement and specific vesicle
formation morphologically similar to those found in poliovirus-infected
cells (2, 3, 9, 16). The amino-terminal domain of the 2C
protein has been identified to associate with the membrane (20,
21). Furthermore, two poliovirus mutants containing a linker
insertion in the 2C protein had temperature-sensitive defects in viral
replication (42, 43). Revertant viruses from the
temperature-sensitive mutant showed an uncoating defect. Recently, a
study with a novel inhibitor of enteroviruses (hydantoin) revealed that
the 2C coding region was likely to be responsible for viral encapsidation (74). Thus, the 2C protein of poliovirus is a multifunctional protein involved in viral RNA replication, but the
entire activity of 2C in the poliovirus replication cycle remains
poorly understood (77).
Guanidine hydrochloride has been known to specifically inhibit the
function of the 2C protein of poliovirus, providing information to
elucidate the role of 2C protein in viral replication. It selectively inhibits the growth of many picornaviruses at concentrations of 0.1 to
2.0 mM. The target of this blockage is thought to be the initiation
step of viral RNA synthesis (7, 15, 54). Guanidine reversibly inhibited viral RNA synthesis in the HeLa S10 in vitro translation-replication system without affecting replication complex formation and viral polyprotein processing (10-12).
Guanidine-resistant and -dependent picornavirus mutants were obtained
after the cultivation of guanidine-susceptible virus in the presence of
guanidine (24, 45). Peptide mapping and nucleotide
sequencing of guanidine-resistant and -dependent mutants revealed
mutations in the 2C region (4-6, 51-53, 60, 72). From
these results, Tolskaya and coworkers concluded that the "hot spot"
of amino acid substitutions of guanidine-resistant and -dependent
mutants is the locus of the putative NTP-binding motif (72).
They speculated that guanidine affected NTP binding and/or splitting
via the conformational modification of the 2C protein. Recently,
Pfister and Wimmer reported that ATPase activity of the recombinant 2C
protein fused to glutathione S-transferase was inhibited by
guanidine hydrochloride (50). The result was the first
direct evidence for the inhibitory action of guanidine on 2C function(s).
In the 1960s, some benzimidazole derivatives, such as
[2-(
-hydroxybenzyl)-benzimidazole (HBB) (see Fig. 1), were shown to have selective antipicornavirus activity (25, 26). To
develop safer and more potent chemotherapeutic agents against
picornaviruses, attempts to evaluate newly synthesized benzimidazole
derivatives have been undertaken (1, 23, 25, 26, 37, 66-68,
76). Previous reports showed that HBB inhibited viral RNA
synthesis in a manner similar to guanidine, but there was little
cross-resistance between these two agents (7, 67). However,
the mechanism of action of other benzimidazole derivatives, including
HBB, on picornavirus replication is poorly understood.
We designed, synthesized, and evaluated a series of benzimidazole
derivatives and found that one of them, MRL-1237 (see Fig. 1), had a
most potent activity against many enteroviruses. Here, we demonstrate
the determinants responsible for MRL-1237 sensitivity in the 2C protein
of poliovirus. Furthermore, we constructed cDNA-derived guanidine-resistant and -dependent mutants and compared the phenotypes of the mutants against MRL-1237, guanidine, and HBB. We found that
mutations located in the 2C protein could be responsible for altered
sensitivity against MRL-1237, HBB, or guanidine.
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MATERIALS AND METHODS |
Antiviral agents.
MRL-1237, HBB, and enviroxime
[2-amino-1-(isopropylsulfonyl)-6-benzimidazole phenyl ketone oxime]
(see Fig. 1) were synthesized at Maruishi Pharmaceutical Co., Ltd.
(Osaka, Japan). Guanidine hydrochloride was purchased from Sigma
Chemical Co. (St. Louis, Mo.). MRL-1237 and guanidine hydrochloride
were dissolved in sterile water and diluted in culture medium. Stock
solutions of HBB (50 mg/ml) and enviroxime (5 mg/ml) were prepared in
dimethyl sulfoxide and diluted with culture medium so that the final
concentration of dimethyl sulfoxide did not exceed 0.2%.
Cells and viruses.
HeLa cells were maintained in Eagle
minimum essential medium (MEM) containing 10% fetal bovine serum
(FBS). The Mahoney strain of poliovirus type 1 was used as an
MRL-1237-sensitive parental virus. For the antiviral assay, Sabin 1 (F113), Sabin 2 (207-3) and Sabin 3 (F313) strains of poliovirus were
used. The Nancy strain of coxsackievirus B3 (CB3) and JVB strain of
coxsackievirus group B4 (CB4) were kindly provided by K. Shinohara and
A. Itagaki, respectively.
Selection of spontaneous MRL-1237-resistant mutants.
The
parental Mahoney virus (100 PFU) was inoculated to a HeLa cell
monolayer (12.5 cm2) in the presence of 50 µM MRL-1237.
The monolayer was incubated at 35.5°C until the cultures exhibited
extensive cytopathic effects (CPEs). After freeze-thawing and removal
of the cell debris by centrifugation, 0.1 ml of each supernatant was
used to infect fresh HeLa cells again in the presence of 50 µM
MRL-1237. The culture supernatants were further applied to second-round
plaque purifications in the presence of 50 µM MRL-1237. Ten
independent plaque-purified mutants were isolated. Five mutants
(MFR10-1 to MFR10-5) were also isolated in the presence of 10 µM
MRL-1237 as described above without using 10 µM MRL-1237 for
selection during viral passages and plaque purifications.
Determination of drug susceptibility.
HeLa cells (4 × 105 cells) were infected with the virus at a multiplicity
of infection of 0.005. After adsorption for 1 h, the cell
suspension (0.1 ml/well) was dispensed into 96-well microtiter plates
containing twofold serial dilutions of an appropriate drug in
triplicate and incubated at 35.5°C. Three days after infection, antiviral activity was measured by a cell protection assay with WST-1
(Wako Pure Chemical Industries, Ltd., Osaka, Japan) (39). Briefly, 20 µl of WST-1 dye solution per well (6 mM WST-1 and 0.4 mM
1-methoxy PMS [Wako Chemicals] in phosphate-buffered saline) was
added to the microtiter plates and incubated at 35.5°C for 3 h.
The absorbance at 450 nm with a reference wavelength of 620 nm was
measured by a microplate reader (Multiskan Bichromatic; Labsystems,
Helsinki, Finland). The 50% effective concentration (EC50)
of each compound was evaluated as the quantity of drug required to
inhibit 50% of virus-induced cell killing. The cytotoxicity of the
drug was determined as described above without inoculation of the virus
and expressed as the 50% cytotoxic concentration (CC50),
i.e., the concentration required to reduce the viability of uninfected
cells by 50%. The effect of each drug on viral replication was also
examined by the plaque reduction assay with or without the drug.
Briefly, samples of a 10-fold serial dilution of the virus were
inoculated to the HeLa cell monolayer in triplicate. After adsorption
for 1 h, the cells were overlaid with MEM containing 2% FBS and
0.9% Noble agar in the presence or absence of the drug. The monolayers
were incubated at 35.5°C for 72 h. The viable cells were
subsequently stained with 1.0 ml of MEM containing 0.01% neutral red.
Sequencing of the 2C region.
To identify mutations in the 2C
region, RNA sequences of the MRL-1237-resistant viruses were
determined. Viruses were grown on the HeLa cell monolayer until
exhibiting CPE. After removal of the cell debris by centrifugation,
viral RNA was isolated from the culture supernatant by phenol-sodium
dodecyl sulfate extraction. cDNA was prepared using Moloney murine
leukemia virus reverse transcriptase (Perkin-Elmer Cetus, Norwalk,
Conn.) and a 1,161-bp DNA fragment (position 4053 to 5213 for the
Mahoney strain) containing the entire 2C region was amplified by PCR by
using the antisense 2CR-1 primer (5'-CTC TCA CCT CCT GGG AGT CAA CTG
C-3') and the sense 2CF-1 primer (5'-ATG CTT CAC CAT GGC AGT GGC
TTA-3'). The amplified DNA fragment was purified with the QIAquick PCR
purification kit (Qiagen GmbH, Hilden, Germany) and sequenced by the
dideoxy termination method using a 373A sequencer system (Applied
Biosystems, Inc., Foster City, Mo.).
Construction of infectious mutant clones.
To confirm that
amino acid substitutions in the 2C region were sufficient to confer
altered drug sensitivity, the mutations, which had been identified in
spontaneous mutants isolated in this study (or previously reported),
were introduced into an infectious cDNA clone of poliovirus type 1. An
infectious clone, pVMT7(1)pDS306(T) (38), derived from a
type 1 Mahoney strain, was kindly provided by A. Nomoto.
A 3.1-kb NheI/BglII fragment (positions 2473 to
5607) of pVMT7(1)pDS306(T) was subcloned into the
NheI/BglII site of a pKF3 vector (Takara Shuzo
Co., Kyoto, Japan) to create a pKFpVM-NB clone. To generate a
pVMT7(1)2C-F164Y clone, a 230-bp BamHI/NsiI fragment (bp 4,603 to 4,832) of pKFpVM-NB was replaced with a corresponding PCR-amplified DNA fragment derived from a
MRL-1237-resistant MFR50-1 mutant.
To obtain pVMT7(1)2C-N179A and pVMT7(1)2C-N179G clones, a DNA fragment
was PCR amplified from 5 ng of pVM1(T7)pDS306(T) as a template DNA by
using the primers 5'-CCC CCG GAT CCA TCA CAC TTC GAC GGA TAC AAA CAA
CAG GGA GTG GTG ATT ATG GAC GAC CTG G(G/T)T CAA AAC CCA GAT
GG-3' and 5'-GGC TAA TGC ATC ACT GTG TGC CAC AGT GGG-3' (mutations are
underlined, and G/T designates a mixture of two bases). The 246-bp
amplified fragment was digested with BamHI and
NsiI, and the 230-bp fragment was cloned into the
BamHI/NsiI site of the pKFpVM-NB. Among mutated
pKFpVM-NB clones, N179A (GCT, bp 4658 to 4660) and N179G (GGT, bp 4658 to 4660) were screened by sequencing. For
pVMT7(1)2C-M187L/A233S and pVMT7(1)2C-M187L/A233T, a DNA
fragment was amplified by using the primers 5'-CCC CCG GAT CCA TCA CAC
TTC GAC GGA TAC AAA CAA CAG GGA GTG GTG ATT ATG GAC GAC CTG AAT CAA AAC
CCA GAT GGT GCG GAC TTG AAG CTG TTC TGT-3' and 5'-GGC
TAA TGC ATC ACT GTG TG(A/T) CAC AGT GGG-3'. The amplified fragment was digested with BamHI and NsiI and
cloned into pKFpVM-NB. Among mutated pKFpVM-NB clones,
M187L/A233S (TTG, 4682 bp to 4684; CCA, 4820 bp to 4822) and
M187L/A233T (TTG, bp 4682 to 4684; ACA, bp 4820 to 4822) were screened.
A pVMT7(1)2C-I120V clone was constructed by the replacement of 647 bp
of the AflII/BamHI fragment (bp 3956 to 4602)
with the PCR-amplified DNA fragment derived from an MFR10-1 mutant.
The entire 2C region of each pKFpVM-NB mutant was sequenced to confirm
the presence of the defined mutations and no additional mutation.
Thereafter, a 3.1-kb NheI/BglII fragment of
pVMT7(1)pDS306(T) was replaced with the corresponding fragments
prepared from each pKFpVM-NB mutant clone.
In vitro transcription and RNA transfection.
Each mutant
cDNA clone was linearized with AatI and transcribed in vitro
with T7 polymerase (RiboMAX Large Scale RNA Production System; Promega,
Madison, Wis.). The template DNA was digested with DNase I, and the
transcribed RNA was purified by isopropanol precipitation. Purified
RNAs (2 µg) were transfected into HeLa cells (5 × 105 cells) using Lipofectin (Gibco BRL Life Technologies,
Gaithersburg, Md.) according to the manufacturer's instructions
(27). The serum-free medium (Opti-MEM; Gibco BRL Life
Technologies) was replaced with MEM at 12 h after transfection,
and cells were subsequently maintained for 48 h. For the
pVMT7(1)2C-M187L/A233S or pVMT7(1)2C-M187L/A233T clone, the
transfectant was cultured in serum-free medium containing 2 mM of
guanidine hydrochloride immediately after transfection and maintained
in the presence of guanidine. After exhibiting CPE, the virus stock was
obtained by freeze-thawing, and the virus titer of transfectants was
determined by the plaque assay. The resultant viruses prepared from
cells transfected with pVMT7(1)pDS306(T), pVMT7(1)2C-F164Y,
pVMT7(1)2C-I120V, pVMT7(1)2C-N179A, pVMT7(1)2C-N179G, pVMT7(1)2C-M187L/A233S, and pVMT7(1)2C-M187L/A233T were
designated PV1(M), PV1(M)2C-F164Y, PV1(M)2C-I120V,
PV1(M)2C-N179A, PV1(M)2C-N179G, PV1(M)2C-M187L/A233S, and
PV1(M)2C-M187L/A233T, respectively.
Inhibition of poliovirus-specific RNA synthesis.
To examine
the effect of the drug on viral RNA synthesis in poliovirus-infected
cells, we used the Northern ELISA kit (Boehringer GmbH, Mannheim,
Germany) for the detection and semiquantification of viral specific
RNA, with minor modifications.
For the assay, a digoxigenin (DIG)-labeled poliovirus-specific DNA
probe was prepared by PCR. The 1,161-bp DNA fragment was amplified with
2CR-1 and 2CF-1 primers as described above without using a PCR
DIG-labeling mixture (which includes DIG-11-UTP [Boehringer GmbH]
instead of the dioxynucleoside triphosphate mixture. Samples (multiplicity of infection = 5) of wild-type and mutant viruses were inoculated to the HeLa cell monolayer (12.5 cm2).
After adsorption for 1 h, MEM (with 2% FBS) with or without appropriate concentrations of drug was added (1 ml/well), and subsequently the mixture was incubated at 35.5°C for 5 h. The cells were harvested by trypsinization, and total RNA was extracted with guanidium thiocyanate by the standard procedure (59).
After RNA quantification, the extracted RNA was biotin labeled
according to the recommendations included with the Northern ELISA kit.
The biotin-labeled RNA (100 ng) was quantified, diluted, and hybridized with a heat-denatured DIG-labeled poliovirus-specific DNA probe (100 ng) in 130 µl of hybridization mixture for 3 h at 50°C. The DNA-RNA hybrid (100 µl) was transferred to a streptavidin-coated microtiter plate and incubated for 5 min at 50°C. After each well was
washed, DIG-labeled DNA probe, hybridized to biotin-labeled RNA
immobilized onto the plate, was reacted with a horseradish peroxidase-labeled anti-DIG antibody. After washing each well, 100 µl
of peroxidase substrate (3,3',5,5'-tetramethylbenzidine) solution per
well was added and incubated for 15 min at room temperature. Then,
absorbance at 450 nm with a reference wavelength of 620 nm was measured
by a Multiskan Bichromatic microtiter plate reader. Viral RNA
production was evaluated as the mean of absorbance values from three
independently prepared biotin-labeled RNA samples. Total RNA extracted
from mock-infected HeLa cells was similarly biotinylated and hybridized
with a DIG-labeled poliovirus-specific DNA probe as a negative control.
 |
RESULTS |
Antiviral activity of MRL-1237.
The structures of MRL-1237,
HBB, enviroxime, and guanidine hydrochloride are presented in Fig.
1. The activity of MRL-1237 against
prototype human enteroviruses was compared with that of other
anti-picornaviral compounds. As shown in Table
1, MRL-1237 inhibited the replication of
all enteroviruses tested, at concentrations ranging from 10 to 200 µM, without exhibiting significant cytotoxicity. Coxsackie B viruses
were most sensitive to MRL-1237, and the selectivity indexes were
nearly 1,000. MRL-1237 was consistently more effective against
enteroviruses than both guanidine hydrochloride and HBB. Among
polioviruses, a type 2 strain was most sensitive, and type 1 strains
were least sensitive to HBB, as previously described (26,
66). Such an antiviral profile of HBB was similar to that of
MRL-1237. Enviroxime exhibited potent and broad-spectrum activity
against the enteroviruses tested (18, 76). The selectivity index value of enviroxime against the polioviruses was more than 10 times higher than that of MRL-1237.
Isolation and characterization of spontaneous MRL-1237-resistant
mutants.
After two passages and subsequent second-round plaque
purifications in the presence of MRL-1237, 15 independent
MRL-1237-resistant mutants were cloned. The MRL-1237-resistant mutants
could be grouped into two categories (Table
2). Of the 15 mutants, 14 were highly resistant to MRL-1237 and cross-resistant to guanidine hydrochloride (mrgr). The EC50 values of MRL-1237 against the
mrgr mutants were approximately 40 times higher than those
against the parental Mahoney strain (Table 2). On the other hand, the
MFR10-1 mutant was only twice as resistant to MRL-1237 and remained
susceptible to guanidine (mrgs). Due to the cross-resistance
of mrgr variants to guanidine hydrochloride, we determined
the nucleotide sequence of the entire 2C region of these mutants. Of
the 15 mutants, all of them contained a single nucleotide substitution
that altered one amino acid in the 2C protein (Table 2). Fourteen
mrgr mutants contained the same substitution, Phe-164 to Tyr
(UUC to UAC; the substitution is underlined). Another
mutant, MFR 10-1, contained an amino acid substitution of Ile-120 to
Val (AUU to GUU).
Construction and characterization of infectious mutant clones.
To confirm that the mutations of 2C were directly responsible for
resistance to MRL-1237, we introduced nucleotide substitutions into an
infectious cDNA clone derived from the Mahoney strain of poliovirus
type 1. In addition, we constructed other infectious mutant clones,
which were expected to have guanidine-resistant and -dependent
phenotypes. The mutants with a single amino acid substitution at
Asn-179 of 2C have been demonstrated to exhibit a guanidine-resistant
phenotype (5, 51-53, 72). The amino acid substitution of
Ala-233, together with the Met-187-to-Leu substitution, was reported
to generate a guanidine-dependent or -resistant phenotype (5,
72). According to these reports, we constructed four more
cDNA-derived mutants containing the substitutions Asn-179-to-Ala, Asn-179-to-Gly,
Met-187-to-Leu/Ala-233-to-Ser (double mutation), and
Met-187-to-Leu/Ala-233-to-Thr (double mutation).
After transfection of each transcribed RNA into HeLa cells,
viruses derived from pVMT7(1)pDS306(T), pVMT7(1)2C-F164Y,
pVMT7(1)2C-I120V, pVMT7(1)2C-N179A, and pVMT7(1)2C-N179G
could be recovered in the absence of drug. Sixty hours after
transfection of transcribed RNA derived from pVMT7(1)2C-M187L/A233S or
pVMT7(1)2C-M187L/A233T, no virus was detected when the
transfectant was cultured in drug-free medium. Two guanidine-dependent
viruses could be recovered when the HeLa cells were maintained in the
presence of 2 mM guanidine hydrochloride after transfection.
We examined the drug susceptibility of cDNA-derived mutants to
MRL-1237, guanidine hydrochloride, and enviroxime. We were unable to
compare the EC50 values of the mutants for HBB, because HBB
originally showed little effectiveness even against the wild poliovirus
type 1 strains (Table 1). As shown in Table 2, the EC50
value of PV1(M)2C-F164Y for MRL-1237 was more than 40-fold higher than
that of the parental PV1(M) virus. The F164Y mutant was cross-resistant
to guanidine hydrochloride but remained susceptible to enviroxime. The
EC50 value of PV1(M)2C-I120V to MRL-1237 was slightly
increased compared with that of the parental virus, and the mutant
remained susceptible to guanidine hydrochloride and to
enviroxime. The EC50 values of both PV1(M)2C-N179A
and PV1(M)2C-N179G for guanidine hydrochloride were more than 10 times higher than that of the parental virus, and the mutants were
cross-resistant to MRL-1237 but not to enviroxime.
MRL-1237 at a 50 µM concentration reduced the plaque titer of PV1(M)
virus more than 4.0 log10-fold compared with that of the
untreated control (Fig. 2). On the other
hand, PV1(M)2C-F164Y virus produced almost the same number of plaques
in the presence of MRL-1237 as did the controls without the compounds.
PV1(M)2C-F164Y was relatively tolerant of 2 mM guanidine compared with
PV1(M). The results indicate that amino acid residue 164 within the 2C protein is a major determinant for reduced sensitivity to MRL-1237 and
also contributes to the generation of a guanidine-resistant phenotype.
To rule out the possibility of mutants emerging with additional
mutations during the plaque assay, we have determined sequences in the
2C region of several mutants picked up from the plaques. No additional
mutations were found (data not shown).

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FIG. 2.
Drug susceptibility of cDNA-derived MRL-1237- and
guanidine-resistant mutants. The effect of 2C mutations on drug
susceptibility was examined with MRL-1237 and guanidine hydrochloride
by plaque-reduction assay. A wild-type [PV1(M)] and drug-resistant
[PV1(M)2C-F164Y, PV1(M)2C-I120V, PV1(M)2C-N179A, or PV1(M)2C-N179G]
mutants derived from cDNA were inoculated to HeLa cells. After
adsorption, HeLa cell monolayers were incubated for 72 h without
drug (solid bars), with 2 mM guanidine (striped bars), or with 50 µM
of MRL-1237 (open bars).
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|
As shown in Fig. 2, PV1(M)2C-I120V virus was reduced in titer by 1.5 log10 PFU/ml in the presence of 50 µM MRL-1237. The
amount of the plaque reduction of I120V was less than that of PV1(M). However, the plaque size of I120V treated with MRL-1237 was reduced from that observed in the absence of drug (data not shown). In general,
the drug-resistant phenotypes of cDNA-derived mutants were identical to
those of the corresponding spontaneous mutants.
We next examined drug-dependent phenotypes of
guanidine-dependent, site-directed mutants,
PV1(M)2C-M187L/A233S and PV1(M)2C-M187L/A233T, in the presence or
absence of drug (Fig. 3). The plaque
titers of both M187L/A233S and M187L/A233T were increased by more than 4.0 log10-fold in the presence of 2 mM guanidine
hydrochloride compared with those of the untreated controls. The
incubation of M187L/A233T resulted in a 4.3 log10-fold-higher titer in the presence of 200 µM HBB
than in its absence. The M187L/A233S virus was less sensitive to HBB
than M187L/A233T at the 200 µM concentration. The guanidine-dependent
mutants (M187L/A233S and M187L/A233T) displayed more than 2.6 log10-fold-higher titers in the presence of 50 µM
MRL-1237 than in its absence. However, the stimulative effect of
MRL-1237 was less than that found for the guanidine-dependent mutants
treated with guanidine hydrochloride or HBB (Fig. 3), and the sizes of
plaques induced by MRL-1237 were significantly smaller than those
induced by guanidine hydrochloride or HBB (data not shown). On the
other hand, no stimulative activity of enviroxime for viral replication
against both guanidine-dependent mutants was observed at a 30 µM
concentration (Fig. 3). We could not examine the effect of enviroxime
at more than 30 µM due to cytotoxicity. The guanidine-dependent
mutants exhibited no drug-dependent phenotypes for enviroxime at
concentrations ranging from 0.1 to 30 µM (data not shown).

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FIG. 3.
Effect of guanidine hydrochloride and benzimidazoles on
the replication of cDNA-derived guanidine-dependent mutants.
Drug-dependent phenotypes of PV1(M)2C-M187L/A233S (solid bars) and
PV1(M)2C-M187L/A233T (open bars) were examined in the plaque assay.
After viral adsorption, the cell monolayers were incubated for 72 h in the presence or absence of the drug. Final concentrations of
MRL-1237, guanidine hydrochloride, HBB, and enviroxime were 50, 2,000, 200, and 30 µM, respectively.
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Inhibition of poliovirus-specific RNA synthesis.
To determine
the effect of MRL-1237 and guanidine on the viral RNA synthesis of wild
[PV1(M)], guanidine-resistant [PV1(M)2C-F164Y], and
guanidine-dependent [PV1(M)2C-M187L/A233S] viruses in infected cells, we used the Northern ELISA. Optical density at 450 nm
(OD450) ranging from 0.1 to 2.0 could be quantitatively
determined with dilutions of a positive control poliovirus RNA (Fig.
4B).

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FIG. 4.
Effect of MRL-1237 and guanidine on poliovirus-specific
RNA synthesis. Poliovirus-specific RNA synthesis in virus-infected HeLa
cells was determined by the Northern ELISA assay described in Materials
and Methods. (A) The HeLa cell monolayers were inoculated with a
wild-type PV1(M) virus, with an MRL-1237-resistant PV1(M)2C-F164Y
virus, or with a guanidine-dependent PV1(M)2C-M187L/A233S virus. The
infected cells were incubated in MEM without drug (solid bar), with 2 mM guanidine (striped bar), or with 50 µM MRL-1237 (open bar) for
5 h. The extracted RNAs were biotinylated, and 100 ng of
biotinylated RNA per 130 µl was hybridized with 100 ng of a
DIG-labeled poliovirus-specific DNA probe. Finally, the biotinylated
poliovirus-specific RNA was visualized by the
peroxidase-tetramethylbenzidine system. The viral RNA production is
presented as the mean OD450-620 (the absorbance at 450 nm
with a reference wavelength of 620 nm) values of three individual RNA
samples. Total RNA from mock-infected cells was also prepared as a
negative control. (B) Poliovirus RNA was transcribed from a
pVMT7(1)pDS306(T) clone and biotinylated as a positive control. The
OD450-620 values were determined with dilutions of the
biotinylated poliovirus RNA.
|
|
As shown in Fig. 4A, MRL-1237 at 50 µM inhibited the production of
viral RNA at least 20-fold in PV1(M)-infected cells. In contrast,
MRL-1237 did not inhibit viral RNA synthesis in cells infected with a
PV1(M)2C-F164Y virus. Guanidine reduced viral RNA synthesis in
PV1(M)-infected cells and remained to inhibit viral RNA synthesis in
F164Y-infected cells at the concentration of 2 mM. Guanidine stimulated
viral RNA synthesis of a guanidine-dependent mutant,
PV1(M)2C-M187L/A233S, but MRL-1237 exhibited little, if any, effect in
this assay system. The stimulative effect of MRL-1237 on viral RNA
synthesis of the M187/A233 mutant was significantly less than that of
guanidine, like the effect on virus production in the plaque assay
shown in Fig. 3.
 |
DISCUSSION |
To elucidate the role of picornavirus proteins in viral
replication, specific inhibitors of the proteins and their resistant and dependent mutants have been studied (32-36, 40, 41, 48, 49,
62). In this study, we demonstrated that a novel antienteroviral agent, MRL-1237, targeted the nonstructural protein, 2C, of poliovirus, and a particular amino acid substitution (Phe-164-to-Tyr) within the
protein was directly responsible for altered sensitivity to MRL-1237.
We used the Mahoney strain of poliovirus type 1 for the analysis of
MRL-1237-resistant mutants because almost all genetic studies of
guanidine-resistant and -dependent mutants have used this strain
(5, 6, 51-53, 72).
Previous reports indicated that poliovirus mutants with a
guanidine-resistant or -dependent phenotype usually contained one or
more nucleotide substitutions within 2C. As summarized in detail by
Tolskaya and coworkers (72), guanidine mutants could be
categorized into two major groups. One mutant group, class N, contained
an amino acid substitution at Asn-179 to Ala or Gly. The mutation at
Asn-179 to Ala or Gly needs two nucleotide changes, from AAU to
GCU, or to GGU, respectively (substitutions are
underlined). Another group, class M, had an amino acid change at
Met-187 to Leu (from AUG to UUG) usually coupled with at
least one additional mutation. The difficulty in obtaining
guanidine-resistant or -dependent mutants with a single nucleotide
substitution suggests that a point mutation is insufficient to alter
the phenotype. Alternatively, such a single nucleotide change may be
lethal to the growth of the virus (6, 72).
In contrast to a number of typical class N and class M mutants, only
two nontypical guanidine-resistant mutants have been isolated (5,
51). One of them, gr1, had an amino acid change at
Phe-164 to Tyr (5). The gr1 virus was resistant
to 1 mM guanidine at 35°C but did not grow well in the absence of
guanidine at 41°C. Interestingly, the gr1 mutation is
identical to that of the major MRL-1237-resistant mutants
(mrgr) isolated in this study. Among spontaneous
MRL-1237-resistant mutants, most were of the gr1 type (Table
2). The spontaneous mrgr mutants and a corresponding
cDNA-derived mutant [PV1(M)2C-F164Y] were markedly resistant to
MRL-1237 and cross-resistant to guanidine. In addition, we have
followed up the guanidine-dependent trait of F164Y at 41°C (data not
shown) as previously observed with gr1 (69). We
easily isolated mrgr mutants in the presence of 50 µM
MRL-1237. This is reasonable because only one nucleotide change (UUC to UAC) was sufficient to confer the MRL-1237-resistant
phenotype. For guanidine mutants, however, it is difficult to answer
why most of the guanidine mutants needed multiple mutations to confer the phenotype.
As shown in Fig. 5, a major determinant
for MRL-1237 resistance, a Phe-164 residue, is located between the
so-called Walker A motif (GXXXXGKS/T) and Walker B motif (DD/E) found
in putative ATP- and GTP-utilizing enzymes (75). The motifs
are highly conserved among picornaviruses (GXXGXGKS and DD) and are
thought to play a significant role in viral replication because the
introduction of defined mutations into the motifs was lethal (Fig. 5)
(47, 70). Crystal structures of DNA and RNA helicases
(63, 78) suggest that the conserved motifs of the proteins
share a catalytic pocket for NTP-binding and/or NTPase activity. The
Walker A motif is responsible for binding the triphosphate tail of NTP,
and the B motif is involved in the binding of Mg2+, which
is required for NTP hydrolysis. The mutations conferring altered
MRL-1237 or guanidine susceptibility were located in close proximity to
the loci of NTP-binding motifs. In the case of guanidine mutants, the
major determinants of the phenotypes, Asn-179 and Met-187, were
hypervariable residues among picornaviruses (Fig. 5). On the other
hand, an FDGY motif containing the Phe-164 residue is highly conserved
among picornaviruses (WDGY is conserved only in hepatitis A virus).
This suggests a significant role for the FDGY motif in viral RNA
replication of picornaviruses. In fact, we have confirmed that the
replacement of Phe-164 by Ala abolished viral replication of poliovirus
by site-directed mutagenesis (data not shown). The FDGY motif is buried
in a polar amino acid cluster (XXFDGYXXX, polar amino acids are
underlined and Gly has an intermediate property), but Phe-164 is the
only nonpolar amino acid in the cluster. It may be important to the
MRL-1237-resistant phenotype for the mutation to introduce a hydroxyl
moiety into the phenyl ring of phenylalanine, increasing the
hydrophilicity of the cluster.

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FIG. 5.
Amino acid alignment of the NTP-binding motif of the 2C
proteins of picornaviruses. The sequence data were obtained from the
GenBank sequence database. The names of virus species are abbreviated
as follows and the GenBank accession number is shown in parentheses:
polio1, Mahoney strain of poliovirus type 1 (J02281); EV70, J670/71
strain of enterovirus 70 (D00820); coxB3, Nancy strain of
coxsackievirus B3 (M16560); coxB4, JVB strain of coxsackievirus B4
(X05690); coxA16, G-10 strain of coxsackievirus A16 (V05876); Rhino14,
1059 strain of human rhinovirus type 14 (K02121); Rhino2, HGP strain of
human rhinovirus type 14 (X00429); FMDV, Argentine/61 strain of
foot-and-mouth disease virus A10 (K02990); EMCV, R strain of
encephalomyocarditis virus (M81861); HAV, LA strain of human hepatitis
A virus (K02990). Amino acids are numbered from the amino terminus of
the 2C protein of poliovirus type 1. The consensus A and B motifs of
the NTP-binding proteins are indicated. Solid circles indicate amino
acids critical for the viral replication of poliovirus, as previously
demonstrated by site-directed mutagenesis (47, 70). Highly
conserved amino acid residues among 10 picornavirus strains are shaded
in gray. Major phenotypic determinants for drug resistance or
dependence (Ile-120, Phe-164, Asn-179, and Met-187) are indicated as I,
F, N, and M (boxed) and by large arrows. The minor determinants
responsible for guanidine phenotypes are indicated by small arrows
(72).
|
|
Site-directed mutagenesis confirmed that the single amino acid
substitution of Val for Ile-120 could confer the MRL-1237-resistant phenotype. However, the effect of an Ile-120-to-Val mutation on MRL-1237 susceptibility was relatively moderate. Ile-120 is located in
the vicinity of the consensus A motif (Fig. 5). The I120V mutant remained susceptible to guanidine. No guanidine mutants with the mutation at Ile-120 have been described. The results indicate that
Ile-120 is a specific determinant responsible only for the intermediate
MRL-1237-resistant phenotype.
The cDNA-derived class N guanidine-resistant mutants, N179A and N179G,
were cross-resistant to MRL-1237; likewise, an MRL-1237-resistant mutant, F164Y, was cross-resistant to guanidine. Moreover, class M
mutants of poliovirus, M187L/A233S and M187L/A233T, exhibited both
guanidine- and MRL-1237-dependent phenotypes. The reciprocal cross-resistant phenotype for guanidine and MRL-1237 strongly suggests
that the antiviral mechanism of action of MRL-1237 resemblances that of
guanidine, interfering in the function of the 2C protein. In contrast
with virus replication, such cross-resistant and -dependent phenotypes
were not apparent in the RNA synthesis assay (Fig. 4). The discrepancy
between virus replication and RNA synthesis may be due to the
sensitivity of each assay system. The RNA synthesis of the F164Y mutant
was inhibited but detectable even in the presence of 2 mM guanidine,
but that of the wild-type virus was completely suppressed by guanidine
(Fig. 4).
It is noteworthy that another benzimidazole derivative, HBB, also
supported the full viral replication of two guanidine-dependent mutants. HBB is known to be one of the prototype antipicornavirus benzimidazoles, and its antiviral activity has been well characterized (7, 22-26, 68). Recently, the HBB-dependent phenotype of
echovirus type 9 mutants mapped to the 2C protein (32). In
this study, dependence not only on guanidine but also on MRL-1237 and
HBB was found in two guanidine-dependent mutants (M187L/A233S and M187L/A233T) (Fig. 4). These results clearly demonstrate that the
nonstructural protein 2C is a target molecule of HBB, like guanidine
and MRL-1237. In contrast to MRL-1237 and HBB, enviroxime did not alter
the drug susceptibility of the 2C mutants of poliovirus. Heinz and
Vance isolated enviroxime-resistant mutants of poliovirus and human
rhinovirus and found that mutations conferring enviroxime-resistant phenotypes were located within the 3A coding region (35,
36). As shown in Fig. 1, MRL-1237, HBB, and enviroxime contain
the same benzimidazole nucleus. For enviroxime, all three substitutions in positions 1, 2, and 6 of the benzimidazole nucleus were believed to
be essential for its antiviral activity (76). On the other hand, neither MRL-1237 nor HBB contains a substitution at position 6 in
the nucleus. Thus, enviroxime is likely to possess different characteristics from other benzimidazole derivatives, as discussed previously (76).
In summary, MRL-1237 is a potent inhibitor of poliovirus replication
targeting 2C protein. Elucidation of the exact mechanism of action of
MRL-1237 will provide important information on the function of the 2C
protein in viral replication.
 |
ACKNOWLEDGMENTS |
We thank Harumi Chiba and Akio Nomoto for providing a cDNA clone
of poliovirus, Katsuaki Shinohara for providing coxsackievirus B3, and
Asao Itagaki for providing coxsackievirus B4. We thank Shigeru Morikawa
and Yoshiharu Matsuura for critical reading of the manuscript and
helpful discussion. We also thank Junko Wada for technical assistance.
This work was supported in part by Grants-in-Aid from the Ministry of
Health and Welfare and the Ministry of Education, Science, and Culture, Japan.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Virology II, National Institute of Infectious Diseases, Toyama 1-23-1, Shinjuku-ku, Tokyo 162-8640, Japan. Phone: 81-3-5285-1111. Fax: 81-3-5285-1161. E-mail: tmiyam{at}nih.go.jp.
 |
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Journal of Virology, May 2000, p. 4146-4154, Vol. 74, No. 9
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
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