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Journal of Virology, March 2000, p. 2603-2611, Vol. 74, No. 6
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Rinderpest Viruses Lacking the C and V Proteins
Show Specific Defects in Growth and Transcription of Viral
RNAs
Michael D.
Baron* and
Thomas
Barrett
Institute for Animal Health, Pirbright,
Surrey GU24 ONF, United Kingdom
Received 20 August 1999/Accepted 21 December 1999
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ABSTRACT |
Rinderpest virus is a morbillivirus and the causative
agent of an important disease of cattle and wild bovids. The P genes of
all morbilliviruses give rise to two proteins in addition to the P
protein itself: use of an alternate start translation site, in a second
open reading frame, gives rise to the C protein, while cotranscriptional insertion of an extra base gives rise to the V
protein, a fusion of the amino-terminal half of P to a short, highly
conserved, cysteine-rich zinc binding domain. Little is known about the
function of either of these two proteins in the rinderpest virus life
cycle. We have constructed recombinant rinderpest viruses in which the
expression of these proteins has been suppressed, individually and
together, and studied the replication of these viruses in tissue
culture. We show that the absence of the V protein has little effect on
the replication rate of the virus but does lead to an increase in
synthesis of genome and antigenome RNAs and a change in cytopathic
effect to a more syncytium-forming phenotype. Virus that does not
express the C protein, on the other hand, is clearly defective in
growth in all cell lines tested, and this defect appears to be related
to a decreased transcription of mRNA from viral genes. The phenotypes
of both individual mutant virus types are both expressed in the double
mutant expressing neither V nor C.
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INTRODUCTION |
Rinderpest virus (RPV)
belongs to the Morbillivirus genus of the family
Paramyxoviridae and is thus related to Measles
virus (MV), Canine and Phocid (seal)
distemper viruses, the cetacean morbillivirus, and
Peste des petits ruminants virus. The disease it causes
(rinderpest) has for decades been one of the most widespread and
economically important diseases affecting cattle in Africa, the
Middle East, and the Indian subcontinent. It has been eliminated from
most of these areas in recent years, largely through the efforts of the
European Union- and Food and Agriculture Organization-backed EMPRES
program, with the aim of global eradication by 2010 (22). Like all of the morbilliviruses, there is only one
serotype of RPV, yet wide variation can be found in the pathogenicity
of field isolates, from those causing essentially 100% mortality to
others in which infection causes barely detectable clinical signs
(58, 64). The molecular basis of this variation is unknown.
All of the Paramyxoviridae have single-stranded RNA genomes
of negative sense, with six viral genes, which are transcribed in order
from a single promoter at the 3' end of the genome. From the second of
those genes (the P gene), through utilization of more than one
translation initiation codon and/or the introduction of one or more
nontemplated residues to allow access to alternate reading frames, more
than one protein is always produced, though the exact number and type
of extra proteins vary both between and within genera. The expression
of other proteins from overlapping reading frames was first shown in
Sendai virus (SeV) (26, 55). SeV (15,
29), and Human parainfluenza virus type 1 (hPIV1) (8) express a set of four carboxy-coterminal proteins (C', C, Y1, and Y2), whereas the morbilliviruses
express only a single C protein (6), and the rubulaviruses
(e.g., Mumps virus and Simian virus 5 [SV5]),
with the possible exception of La-Piedad-Michoacan-Mexico virus (7), do not express a C protein at all. The C
proteins of MV (6) and SeV (67) have been
reported to associate with the N and P proteins in infected cells, and
the SeV C is found in purified virions (67). Other reports
have suggested that neither C nor V of MV associates with other viral
proteins (45). In vitro studies suggested that the SeV C
protein specifically decreases transcription from the genome promoter
(i.e., mRNA and antigenome synthesis) (9, 57), possibly
through interaction with the L protein (33). Recombinant
SeVs lacking expression of either C' or C are viable, grow as well as
the wild type, and show the expected increase in viral mRNA levels
(41); however, the double mutant grows more slowly (39,
41), and abrogation of expression of all four C/Y proteins
results in a virus that is very severely disabled (39). An
SeV mutation in the C protein has been reported to abolish
pathogenicity in mice (25). MV lacking its one C protein
grows normally in tissue culture lines (53) but not in
peripheral blood leukocytes (21). The expression of the P
protein and the V protein from viral mRNAs differing only by insertion
of nontemplated bases was first shown for SV5 (59); in this
group of viruses the genome codes for the V protein, while insertion of
two G's is required to produce a mRNA from which the P protein is
translated. Similar editing was subsequently shown in MV
(10) and SeV (61) and shown to be a virus-encoded activity (61), possibly resulting from polymerase stuttering on the genome template during mRNA transcription (62). In
SeV and the morbilliviruses, the P gene encodes the P protein directly, and insertion of a single extra G is required to produce a V-encoding mRNA. The V protein always shares the amino-terminal half of the P
protein. In V, this is followed by a highly conserved motif containing
seven cysteines which has been shown to bind zinc (44, 51)
and also to be required for interaction of the V protein with
damage-specific DNA binding protein (43). The V proteins of
mumps and SV5 are found in virions (51, 56), but those of MV
(27) and SeV (14) are not. This difference may be
due to differences in the P proteins (which are not conserved as to sequence between these two groups of viruses); the N-terminal domain
common to P and V proteins has been shown, in SeV (34) and
SV5 (54), to interact with free N protein, i.e., protein that has not been incorporated into nucleocapsids, while SV5 V protein
has also been shown to bind to nucleocapsids (50, 59). Both
immunofluorescence (65) and biochemical (27)
studies of MV V protein have shown it to be distributed throughout the cytoplasm, as is that of SeV (14), whereas the V proteins of hPIV2 (66) and SV5 (51, 52) contain nuclear
localization signals.
Studies in vitro have shown that the SeV V protein inhibits genome
replication but not mRNA transcription (13, 17, 33); recombinant SeVs that do not express the V protein show higher rates of
genome synthesis, though only in some cell types (18, 19, 35,
36). In MV, on the other hand, the major effects of abrogating V
expression were an increase in viral mRNA transcription and protein
synthesis (60). In all cases, viruses lacking V protein
appear to grow well in tissue culture but are defective in growth in
animals (35, 60).
We have recently developed techniques to create recombinant RPV (rRPV)
based on the most commonly used vaccine strain (1) and have
used these techniques to study the utility of recombinant morbilliviruses as immunizing agents (2, 63), as well as creating chimeric viruses containing elements of RPV and other morbilliviruses (S. C. Das, M. D. Baron, and T. Barrett,
unpublished data). Since the C and V proteins clearly have important
roles in regulating viral replication and pathogenicity, we have also investigated the roles of the C and V proteins in RPV replication by
creating viruses in which the expression of one or both of these
proteins has been abolished. We report here the effects of these
changes on the growth of the resultant mutant RPVs in tissue culture.
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MATERIALS AND METHODS |
Cells and virus.
Cells were maintained and virus stocks were
grown and titered as described elsewhere (1). Rescue of rRPV
from cDNA was performed as previously described (1) except
that transfection was performed using FuGENE6 (Roche Biologicals) or
Transfast (Promega), as described by the manufacturer, and using a
ratio of 6 µl of reagent per µg of plasmid DNA for both reagents.
For measuring viral growth rate, B95a cells (2 × 106
per 35-mm-diameter well), Vero cells, or primary bovine skin fibroblasts (5 × 105 per well) were infected with
rRPV at a multiplicity of infection (MOI) of 0.005 to 0.04 (depending
on the experiment) for 1 h. The inoculum was removed, the cells
were washed twice with medium, and 2 ml of medium was added to each
well. Samples were taken immediately and at various times thereafter
and stored at
70°C. After thawing and clarifying at 2,500 rpm for
10 min, the 50% tissue culture infective dose (TCID50) of
released virus was quantitated by standard methods. All results were
normalized to an initial infection with 104
TCID50 per well.
For observation of individual foci of infection, B95a cells were plated
at 2 × 106 cells per well 2 days before use. Virus at
10 to 100 TCID50 per well was added and allowed to adsorb
for 1 h, after which the cells were washed once with medium and
then overlaid with Eagle's medium containing 4% fetal calf serum and
1% (wt/vol) carboxymethyl cellulose. After 5 to 6 days, most of the
covering medium was removed and the cells were overlaid with undiluted
Giemsa's stain (Merck) for 30 min at room temperature. The stain and
the remaining carboxymethyl cellulose were washed off with water,
and the stained foci were photographed.
Molecular biology and assays.
Except where indicated, all
DNA manipulation was by standard methods. Plasmids were cloned and
grown in Escherichia coli JM109 or DH5
and purified on
CsCl gradients or using Qiagen columns. The change of the C open
reading frame (ORF) initiation codon was introduced into pKSP
(1) by using unique site elimination mutagenesis
(20). The XmaI-XmaI fragment
containing the mutation was swapped with the corresponding fragment
from pMDBNP (1) to give pMDBNPCE, to which were added the M
and F genes from pKSMF (1). The
ClaI-SunI fragment containing the whole N, P, and M genes and most of the F gene was then swapped for the corresponding segment from the full genome cDNA clone in pMDBRPV. The change to
editing site was performed by using the Quick-Change mutagenesis protocol (Stratagene) on pMDBNP; the sequenced
ApaI-KpnI fragment was then used to replace the
same section in pMDBNP (to give pMDBNPVE) or pMDBNPCE (to give
pMDBNPVCE), and the single and double mutations were assembled
into the full-length genome as described above. The introduction of
stop codons in the C ORF was done by using two-stage overlap PCR
(33), modified by using the proofreading DNA polymerase
Pfu (Stratagene) instead of Taq DNA polymerase. The template was either pMDBNPCE or pMDBNPVE, and the
XhoI-KpnI fragments containing the mutations were
removed from these plasmids and inserted into pMDBNP-PacSbf, a version
of pMDBNP where PacI and SbfI sites have been
introduced at the ends of the N and P ORFs, respectively. The
ClaI and SbfI sites at the beginning of the N
gene and end of the P gene were then used to transfer the mutations
into pMDBRPV2C, a version of pMDBRPV containing the same restriction
sites (which have been found to have no effect on virus growth in vitro).
RNA from RPV-infected cells was prepared using Trizol (Life
Technologies), and reverse transcription-PCR (RT-PCR) was performed
as
previously described (
4). PCR products were sequenced
directly
using T7 DNA polymerase (Amersham Pharmacia Biotech) after
treatment
with shrimp alkaline phosphatase and exonuclease I (Amersham
Pharmacia
Biotech). Primer extension analysis was performed essentially
as described previously (
30), except that the primer used
was
5'-GGTCGATTTCACGTCTGT-3' and the stopping nucleotide was
ddA rather
than
ddG.
Semiquantitative RT-PCR was performed essentially like ordinary RT-PCR
except that specific primers, rather than random hexamers,
were used
for the RT step. Total RNA (1.2 µg) was transcribed
with 10 pmol of
RPV primer or 100 µg of oligo(dT)
15 (Promega)
in a final
volume of 20 µl; all samples from one set of time courses
(two of
each type of virus, four virus types, and four time points)
were
transcribed at the same time with aliquots of the same master
mix of RT
enzyme, deoxynucleotide triphosphates, and buffer. For
strand-specific
priming of the RT reaction, the primers used were
5'-GTAGGCTGGTGAGTAATCT-3' (primes on genome positions 309 to
291)
and 5'-TGATTCCCCGG-ATAGCC-3' (primes on antigenome
positions 201
to 185). For PCRs, 5 µl of RT reaction product was used
in a reaction
volume of 50 µl. The program was 95°C for 1.5 min
followed by
the indicated number of cycles of 95°C for 30 s,
50°C for 30 s,
and 72°C for 20 s. Genome-specific PCR
used primers 5'-GTAATCTCAAGTCTGGATACC-3'
(primes on genome
positions 297 to 277) and 5'-AGGATCGGGAAGCAGACA-3'
(corresponds to genome positions 83 to 100).
Antigenome-specific
PCR primers were
5'-ACCAGACAAAGCTGGGTAAGGA-3' (corresponds to
antigenome
positions 1 to 22) and 5'-GCGCCTCGAGCCTGTGCCCTAAGCCT-3'
(primes on antigenome positions 181 to 165). P-gene-specific
primers
were 5'-CCCAGTGTGATCCGTTC-3' (corresponds to
antigenome positions
3187 to 3203) and
5'-CCTGCAGGAGATCAGCTATGTTGT (primes on antigenome
positions
3338 to 3356), and H-gene-specific primers were
5'-CCCGTGGGACCGCAAACT-3'
(corresponds to antigenome
positions 8971 to 8988) and 5'-GGCCCTGGTTTATAA-3'
(primes on
antigenome positions 9112 to 9126). The actin control
primers were BA1
and BA2 (
23). Five-microliter samples from
each PCR were
analyzed in 1.3% agarose gels using 1× Tris-borate-EDTA
buffer; gel
and buffer contained 0.05 µg of ethidium bromide per
ml. The
fluorescence of the ethidium bromide-stained DNA was recorded
using a
Bio-Rad Chemi Doc system, and the peak area for each band
(average
pixel density per row of pixels multiplied by the number
of rows),
determined using the QuantityOne software (Bio-Rad),
was taken as a
measure of the relative amount of PCR product.
Where no DNA was
visible, the pixel density in the equivalent
region was determined. The
Chemi Doc system consists of a charge-coupled
device camera coupled to
a digitizing board, the limited spatial
resolution of which accounts
for the grainy quality of the resulting
images.
Antibodies and immunoprecipitation.
Rabbit antisera
recognizing the RPV C protein were raised against bacterially expressed
glutathione S-transferase fusion proteins, using the pGEX
vector. The rabbit anti-V antiserum was the kind gift of D. Briedis,
Department of Microbiology and Immunology, McGill University, Montreal,
Quebec, Canada. Mouse monoclonal antibody 2-1 recognizing the RPV P
protein was the kind gift of M. Sugiyama, Department of Veterinary
Public Health, Faculty of Agriculture, Gifu University, Gifu, Japan.
For immunoprecipitation studies, cells in six-well plates were infected
with rRPV for 2 days, incubated for 1 h in Eagle's medium without
methionine or cysteine, and then incubated for 2 h in 0.5 ml of
the same medium containing 5 to 10 µCi of PROMIX (Amersham Pharmacia
Biotech), a mixture of amino acids containing
[35S]methionine and [35S]cysteine. The
medium was removed, and the cells were lysed in 0.5 ml of lysis buffer
(1% [vol/vol], Nonidet P-40, 50 mM Tris-Cl [pH 7.5], 0.5 M NaCl, 5 mM EDTA, 0.5 mM phenylmethylsulfonyl fluoride, 2.5 mM iodoacetamide,
100 ng each of leupeptin, pepstatin, antipain, and chymostatin per ml).
The lysate was incubated first with nonimmune rabbit serum and protein
A-Sepharose (Amersham-Pharmacia) for 1 to 2 h at 4°C,
centrifuged to remove the protein A-Sepharose, and then incubated with
the specific antiserum and protein A-Sepharose overnight at 4°C.
Immunoprecipitation of P protein was routinely from one-fifth the
amount of lysate used from which to immunoprecipitate V or C. Where the
primary antibody was a mouse monoclonal antibody, 0.5 µl of rabbit
anti-mouse immunoglobulin G (Dakopatts) was added in addition to bind
the mouse antibody more efficiently to the protein A. Sepharose pellets
were washed, and samples were prepared for sodium dodecyl
sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) as described
elsewhere (3). SDS-PAGE was performed using the buffer
system of Laemmli (40); gels were fluorographed using sodium
salicylate (12).
Digital image processing.
Original gel pictures
(autoradiographs or fluorographs) or photomicroscopy transparencies
were photographed using a Kodak DCS420 digital camera or scanned with a
Linotype-Hell Saphir, transferred to a PowerMac 7500, converted to grey
scale and clipped in Adobe Photoshop, laid out and labeled in
QuarkXPress, and printed on a Kodak XLS 8600 printer. Gel images from
the Chemi Doc system were exported as TIFF files, cropped to the
appropriate region, and imported to ClarisDraw for labeling and
printing as described above.
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RESULTS |
Introduction of mutations to abolish the expression of C or V
protein.
The three P gene ORFs that are utilized by the virus are
illustrated in Fig. 1a. The AUG initiator
codon for the P and V proteins has a suboptimal context (C at
3,
rather than the preferred A or G [38]); the C ORF
starts at the next AUG, 20 bases downstream (Fig. 1b). To abolish C
expression, we first changed this latter AUG codon to ACG, this being
the only change to that codon that would be silent in the P protein
(Fig. 1b). Although the rescued viruses containing this mutation
[RPV(CE) and RPV(VCE)] did not express C protein (see below), we were
concerned that a reversion could occur through a single point mutation,
and RNA viruses have a relatively high mutation rate, making such a
reversion possible. In addition, ACG is used as the C' protein start
codon in SeV (15, 29), and so it was possible that some C
protein might be expressed from this ACG, even though the next base
after the ACG codon in our mutant (C) is the least conducive to such
usage (28). We therefore introduced two stop codons into the
C ORF (again, with no change to the P protein), in addition to the
change in the initiation codon (Fig. 1b), giving rise to recombinant viruses RPV C
and RPV VC
. In fact, no difference was seen in the
behavior of viruses with the single change or with both changes to the
C ORF, and data on their growth rates in tissue culture were pooled.

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FIG. 1.
Mutations introduced into the P gene of RPV. (a) ORFs
used in the RPV P gene. Positions of the ORFs for the P and C proteins
are shown, as well as the V protein-specific (Vs) motif accessed by the
cotranscriptional insertion of a nontemplated G residue at the editing
site (marked). (b) Elimination of expression of the C protein.
Sequences of P gene transcripts at the start of the ORFs for the P and
V proteins (P/V) and the C protein (C) are shown, along with sequences
of the start of the P/V and C proteins. The highlighted bases were
changed to the base above, as described in the text. (c) Elimination of
cotranscriptional editing and hence expression of the V protein.
Sequences of P gene transcripts at the editing site are shown; all four
highlighted bases were changed to the base above.
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Expression of the RPV V protein requires the nontemplated insertion of
an extra G base in the sequence UUAAAAAGGGCACAGA, extending
the run of G's from three to four. Although the minimal sequence
required for editing has been mapped to only a 24-base section
of SeV
(
49), it is generally assumed that the run of purines
followed by the three G's is essential. Four changes were made
simultaneously to this motif (Fig.
1c) to ensure that no editing
should
occur, that no V protein should be made, and that no single
mutation
could restore V expression. All of the changes were silent
in the P
ORF.
All of the mutations were made first in a cDNA clone of the P gene, and
the C

and V

mutations were combined to make the
VC

P gene. The
different versions of the P gene were then incorporated
into the
full-length clone of the RPV genome for rescue into live
virus (see
Materials and Methods for details). All mutant viruses
were rescued
without major difficulty, although the double (VCE
or VC

) mutants
could not be rescued until we had improved the
efficiency of our
transfection system by changing the transfection
reagent from
Lipofectin/LipofectACE (
1) to FuGENE6 or Transfast
(see
Materials and Methods), which gave a 12- or 20-fold increase
in
transfection efficiency. RT-PCR was used to amplify viral RNA
from
specific regions of the genomes of mutant viruses, and the
PCR products
were sequenced to confirm the presence of the appropriate
mutation. All
of the studies reported here were performed on two
separately isolated
clones of the virus type in question. In addition,
although the B95a
lymphoblastoid cell line that we used for most
of the studies reported
here seems to be the best line so far
discovered for growing RPV
(
37), allowing direct culture of
wild viruses without
adaptation by blind passage, we have noticed
that repeated passage of
viruses in B95as does increase the rate
of replication of RPV in these
cells (normally noticeable by about
passage 6), and therefore we
performed all studies on virus stocks
of passage 2 or
3.
Expression of C and V proteins by mutant viruses.
The
effectiveness of the introduced mutations in preventing the expression
of the C or V protein was assessed by immunoprecipitation of
35S-labeled proteins from lysates of labeled infected
cells. As can be seen in Fig. 2, all
three P-gene-derived proteins were made in cells infected with ordinary
RPV. No C protein was found in cells infected with RPV CE, VCE, C
, or
VC
, and no V protein was found in cells infected with RPV V
, VCE,
or VC
. To determine if the mutations that we had introduced into the
editing site of the P gene had abolished nontemplated base insertion
completely, we used a modification of the primer extension technique
that we had used previously to examine P gene editing in different strains of the virus (30), in which a labeled primer is
extended on isolated mRNA, or PCR products derived from mRNA, until the first A residue is incorporated. As the only source of adenine is
ddATP, this terminates extension after only 10 to 12 bases. This
technique should show one band for the normal unmodified P gene
transcript, with an additional band for transcripts containing an
additional base (Fig. 3a). Further bands
will be seen for transcripts containing two or more nontemplated bases:
such editing events are normally seen, to various extents, in
morbilliviruses (5, 10, 30). Due to the mutations introduced
into the P gene in order to abolish editing, the predicted size of the
primer extension product from the unedited P(V
) gene transcript is
one base longer than that from the P gene of the unmutated virus (Fig.
3b). Although editing of transcripts from the P gene of normal RPV
could easily be seen (including +2 and +3 bases), there was clearly no
editing in viruses containing the V
mutation (Fig. 3c), the single
primer extension product being 29 bases long, the same length as the product from the V mRNA cDNA clone.

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FIG. 2.
Immunoprecipitation of P, V, and C proteins from B95a
cells infected with RPVs. Lysates of labeled infected cells were
prepared as described in Materials and Methods from cells infected as
indicated at the bottom. Samples of lysates were immunoextracted with
mouse monoclonal anti-P protein (lanes 1, 4, 7, 10, 13, 16, and 19),
rabbit polyclonal anti-C protein (lanes 2, 5, 8, 11, 14, 17, and 20),
or rabbit polyclonal anti-V protein (lanes 3, 6, 9, 12, 15, 18, and
21). Immunoprecipitated proteins were analyzed by SDS-PAGE on 12%
gels, and fluorographs of the gels are shown.
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FIG. 3.
Primer extension analysis of editing events in P gene
mRNA transcripts. (a) Illustration of how the primer is extended on
transcripts from a normal P gene, which will contain three G residues
for an exact copy or four (or more) G's if an editing event takes
place. P* shows the 5' label (32P) on the primer. The
incorporated ddA base that terminates primer extension is
highlighted in bold. (b) As for panel a, but for transcripts
from the mutated (V ) P gene. Note that because of a T C change in
the mutated mRNA sequence, the first A is incorporated one base later,
so the minimum product from unedited mRNAs is 29 bases. (c) Results
from experimental primer extension. Templates used: lane 1, cDNA clone
from P type mRNA; lane 2, cDNA clone from V type mRNA; lane 3, RT-PCR
product from RPV mRNA; lanes 4 and 5, RT-PCR products from two separate
isolates of RPV V .
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Growth of mutant viruses in tissue culture cells.
We examined
the replication rates of all four virus types in tissue culture using
B95a cells, the monkey kidney-derived Vero cell line, or primary bovine
skin fibroblasts. Although unmodified RPV could be grown to titers of
106 to 107 TCID50/ml after only a
few passages, we found that none of the mutants could be grown in
large-scale culture to greater than 105
TCID50/ml, and the double mutant could barely be grown to
104 TCID50/ml. All growth curves therefore had
to be multistep, with an initial infection at an MOI of approximately
0.01 to enable all viruses to be used at the same (or nearly the same)
infectious dose. In B95as, we found that the initial growth rate of the
virus was unaffected by the absence of the V protein, but there was a
decrease in the final titer reached (Fig.
4a). In contrast, the initial growth rate
of viruses lacking the C protein (RPV C
or RPV VC
) was
significantly lower (Fig. 4a). Since the final titer reached is
dependent on the relative rates of viral replication and decay (RPV is
not particularly stable at 37°C, and newly made virus particles lose
infectivity during subsequent culture of the infected cells), it is not
surprising that the more slowly growing RPV C
mutants also grew to a
lower final titer. Identical results were seen in Vero cells (not
shown). In bovine skin fibroblasts, the main difference observed (Fig.
4b) was that the double mutant grew more slowly than that lacking only
the C protein, while the RPV V
mutant continued to grow almost
identically to the normal RPV. In these cells, it appears that the
absence of the V protein is somehow more deleterious to viral
replication in the absence of the C protein than in its presence.

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FIG. 4.
Growth of mutant viruses in tissue culture. Growth rates
of mutant viruses were determined under multistep growth conditions
(MOI of ~0.01) for normal rRPV and the three mutant virus types in
B95a cells (a) or primary bovine skin fibroblasts (b). The results from
four (a) or two (b) experiments, each with two separate isolates of
each virus type, are plotted.
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Although the RBOK vaccine strain of RPV is not particularly lytic in
cell culture and does not form good plaques, we have
found that we can
observe the morphology of individual foci of
infection by overlaying
infected cells with carboxymethyl cellulose
and fixing and staining the
cells after 5 to 6 days using Giemsa's
stain (see Materials and
Methods). Examples of the viral foci
observed for the four types of
virus are shown in Fig.
5: clear
differences were seen due to the presence or absence of the individual
V or C proteins. Normal RPV shows large areas mostly cleared of
cells,
with several small syncytia in each infected focus. RPV
V

developed
similar-size plaques but with many more and larger
syncytia, while RPV
C

developed plaques similar to those formed
by RPV only much smaller,
as might be expected from its lower
growth rate. The foci of growth of
RPV VC

showed both changes,
being smaller than normal RPV and having
the increased syncytium-forming
tendency of RPV V

. The effects of
lack of the individual V or
C proteins are thus clearly distinct and
additive, as both phenotypes
are combined when the mutations are
combined.

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FIG. 5.
Plaque morphology. B95a cells infected with normal RPV
or each of the mutant virus types were grown under carboxymethyl
cellulose and stained as described in Materials and Methods; individual
foci of infection were photographed. Two representative foci of each
virus type are shown. Bar = 200 µm.
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Effects of defects in V or C expression on synthesis of viral
RNAs.
Although the V
mutation had no detectable effect on viral
growth rate in tissue culture, it was clear from the above results that
this mutation did change the way the virus replicated, inasmuch as the
balance between virus-induced cytopathic effect and viral protein-induced cell-cell fusion was altered in viruses carrying this
mutation. As we were unable to grow virus to high titer and hence
unable to infect at high MOI, we were unable to generate sufficiently
strong signals in Northern blots to study the synthesis of viral RNAs
at early time points (0 to 24 h postinfection [hpi]) when viral
replication is still effectively in single-step mode (growth curves
show that new virus is released from cells only at 20 to 24 hpi). We
therefore used semiquantitative RT-PCR (35) to compare the
four virus types with each other. Initial experiments showed that the
amount of PCR product was proportional to the input RNA over a range of
about 50-fold, though the optimum number of cycles depended on the
maximum and minimum of the range of input RNA concentrations. RNA was
isolated from cells infected at an MOI of approximately 0.005 at
various times postinfection, and RT reactions were performed with
primers specific for mRNA [oligo(dT)], genome sense RNA, or
antigenome sense RNA. Primer pairs for PCR amplification of antigenome
sequences included one primer from a promoter (non-mRNA) region. The
results of these studies are shown in Fig.
6. We used the amplification of actin mRNA as an internal control to show that RNA from the same number of
cells was included in each reaction mixture. The actin signal was in
the linear range after 15 or 16 cycles, similar to the results found
for cells infected with SeV at high MOI (35). To detect the
RPV genome, however, 20 to 22 cycles were required, while antigenome
amplification required about 28 cycles (Fig. 6). We consistently found
less antigenome than genome in infected cells (compare the amounts of
PCR product found for genome and antigenome at 22 cycles in Fig. 6a).
The number of cycles required for detecting viral mRNAs depended on the
gene, since RPV, like all members of the order
Mononegavirales, shows a transcription gradient along its
genome, with most transcription taking place from the N gene (the
nearest to the genome promoter), followed in decreasing amounts by the
P, M, F, H, and L genes, in order along the genome (3' to 5')
(11). This arises, it is thought, because primary
interaction of the viral polymerase with the genome can occur only at
the genome promoter, and the polymerase has only a finite probability
of initiating transcription from any one gene after it has finished
transcribing and polyadenylating the previous one. Transcription from
either the P gene or the H gene was clearly depressed in the absence of
the C protein (compare P or H gene mRNA from RPV with RPV C
and RPV
V
with RPV VC in Fig. 6), suggesting that the initiation or extension
of viral mRNA transcripts was decreased in these mutants and that the C protein of RPV has a role in these processes.

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|
FIG. 6.
Semiquantitative RT-PCR of viral RNAs. RNA was purified
from B95a cells infected with 103.5 TCID50 of
normal RPV or the three mutant virus types (C , V , and VC ) for 0, 8, 16, and 24 h. Semiquantitative RT-PCR was carried out as
described in Materials and Methods for 16 cycles (actin mRNA), 20 cycles (P mRNA), 22 cycles (genome and antigenome RNAs and H mRNA), or
28 cycles (antigenome RNA). The PCR products were analyzed on 1.3%
agarose gels, and the amount of PCR product for the viral RNAs was
determined by imaging the gels on a Bio-Rad Chemi Doc system. (a) Gel
images; (b) quantitation of PCR product for genome, antigenome (from
the 28-cycle data), P mRNA, and H mRNA from the images in panel a. The
area under a notional plot of fluorescence signal was calculated for
each PCR product band after removal of the lane background, and this
value was plotted for each time point.
|
|
In contrast, levels of genome and antigenome in RPV and RPV C

were
indistinguishable (Fig.
6), while mutants lacking the
V protein (RPV
V

and RPV VC

) clearly showed higher levels of
such transcripts at
24 hpi, suggesting either an earlier onset
or more rapid rate of
replicative transcription in the absence
of the V protein. Given these
higher amounts of genome RNA, the
template for transcription of viral
mRNAs, one would expect the
V

and VC

mutants to show a
correspondingly greater amount of
viral mRNAs as well, which is what is
observed. However, the increase
in mRNA levels seen in the mutants
lacking the V protein is less
than the corresponding increase in genome
RNA levels. The V protein
may therefore cause an increase in the
general efficiency of mRNA
transcription from the viral genome,
although it is not clear
whether it does so by inhibiting replicative
transcription or
promoting that of
message.
We also observed that most of the time zero samples contained
detectable amounts of both genome and antigenome RNAs, presumably
derived from the initial inoculum; the time zero samples from
RPV
VC

-infected cells always contained much more genome and antigenome
than any of the others. Given that all experimental wells were
infected
with the same dose of infectious virus (as measured by
TCID
50), this suggests that preparations of RPV VC

had
far higher
amounts of viral RNA, either as intact virus or unenveloped
nucleocapsid,
per infectious unit than was the case for the other virus
types,
suggesting in turn a greatly decreased efficiency of
incorporation
of viral genomes into infectious
particles.
 |
DISCUSSION |
The V-specific domain of the V protein is conserved among almost
all of the paramyxoviruses, although it is not universally expressed,
being absent from hPIV1 and hPIV3 (24, 46). This domain has
been shown to bind zinc in MV and SV5 (and hence probably in other V
proteins) (44, 51) and is responsible for interaction of the
MV V protein with several host cell proteins (45); the V
proteins of SV5, MV, and hPIV2 (but not SeV) interact with
damage-specific DNA binding protein and require this Zn binding domain
to be intact in order to do so (43). The P protein itself,
on the other hand, especially its amino-terminal half, is poorly
conserved (5). Nevertheless, the amino-terminal part of the
P protein has been shown to interact specifically with monomeric
nucleocapsid protein in SV5 (54), SeV (17, 34),
and MV (31), and this property is shared by the V protein.
In SeV and the morbilliviruses, insertion of two G's at the editing
site gives rise to a third protein called W or R, which is the P
protein amino-terminal domain without the V protein zinc binding motif
and which also is able to bind monomeric N protein. As can be seen in
Fig. 3, a small but detectable amount of R-encoding mRNA is normally
produced in RPV. In vitro studies have shown that V protein (or W/R)
inhibits viral replication, but not mRNA transcription (13, 17,
34), at least in SeV. The binding of these proteins to N appears
to prevent its interaction with the P protein (34), making
the N protein unavailable for encapsidation; if one thinks of
replication as being divisible into transcription plus encapsidation
(13), an increase in available N should increase replication
of the genome and antigenome or bring forward the point in the virus
replication cycle where sufficient N protein accumulates in the
infected cell to allow replicative rather than mRNA transcription to
occur. As predicted from these observations, SeV that does not edit its
P gene transcripts shows increased genome and antigenome synthesis
(35), though this appears to occur only in some cell lines
(19, 35). Similarly, increased antigenome accumulation is
observed in glioblastoma cells infected with MV V
(though genome
levels were not determined in those experiments) (60), and
we have shown here that RPV V
(with or without the C protein) shows
increased production of both genome and antigenome, i.e., increased
transcription of the encapsidated viral RNAs. Although the increased
replicative transcription will decrease the transcription of mRNA from
any one genome, this may be offset, or more than offset, by the
increase in the number of genome templates available. Exactly what
final effect there will be on viral mRNA levels and hence on viral
protein levels will depend on how efficiently the virus can utilize
these templates, which will depend in turn on the general replication machinery of that strain of virus, and also possibly on the
availability of host cell proteins necessary for viral transcription,
and so on the host cell itself. Hence, a normally virulent strain of SeV shows a large increase in mRNA levels in the absence of V protein
(35), while modified versions of the Edmonston vaccine strain of MV (60) and the RBOK vaccine strain of RPV (work
presented here) show only a slight increase in mRNA levels when V
protein is not expressed. However, given the increased level of genomes observed in our own studies, there is probably a decrease in mRNA production per genome template in RPV V
and RPV VC
. MV V
(in glioblastoma cells) and RPV V
(in lymphoblastoid cells) both show an
increase in syncytium formation. This is unlikely to be due simply to a
rise in expression of viral glycoproteins due to an increase in viral
mRNAs, since the increases seen are small in both cases, but may
reflect an additional change in the total cytopathic effect caused by
the absence of the V protein which alters the balance among viral
assembly, cell death, and cell-cell fusion. This balance is also cell
type dependent, as we see syncytium formation easily in RPV-infected
B95a cells but rarely in Vero cells.
Both SeV V
and MV V
have been shown to be defective in replication
in infected animals (35, 60). This effect has been seen most
markedly in the SeV studies (35), since the parental SeV is
virulent in mice but the V
form is avirulent, being rapidly cleared
from the lungs of infected mice. The RPV strain that is the parent for
all of our recombinants is itself avirulent, and so no major effect of
the V
mutation would be apparent unless the virus became so
attenuated as to no longer form an effective vaccine. However, cattle
infected with RPV V
are effectively immunized against lethal
challenge (unpublished observations), indicating that any change in in
vivo phenotype caused by the absence of V protein expression is masked
by the preexisting attenuation of the virus.
The C proteins of the Sendai group of paramyxoviruses and those of the
morbilliviruses are not conserved as to sequence and therefore cannot
be assumed to have the same function in the viral life cycle. SeV C
proteins have been shown to suppress mRNA transcription (16), and in general transcription from the genome promoter (9), possibly through the interaction of the C protein with the viral L protein (33). As predicted, SeV defective in
expression of either of the first C proteins (C' or C) showed increased
viral mRNA levels (41); however, abolition of expression of
both C' and C leads to a slow-growing virus with decreased viral RNA
levels (39, 41). SeV that expresses no proteins from the C
ORF (no C', C, Y1, or Y2) is almost nonviable
(39).
Much less is known about the morbillivirus C protein. Like the SeV C
proteins (67), it colocalizes with viral N, P, and L
proteins in infected cells (6; M. D. Baron,
unpublished data), suggesting that it is involved in some way with
viral RNA transcription. MV and RPV which express no C protein are
reasonably viable in most cell lines tested (references
21 and 53 and work presented here), unlike SeV. MV C
grows normally in Vero cells but very poorly
in peripheral blood leukocytes (21, 53); in the latter, levels of MV viral genome and N mRNA are both reduced in the absence of
the C protein. RPV C
is defective in growth in B95a, Vero, and
primary bovine skin fibroblasts; genome and antigenome accumulation are
like that of the parental virus, but there is a clear effect of the
absence of the C protein on mRNA transcription, suggesting that the C
protein may play a role in initiation, extension, or termination of
mRNA transcription.
A noticeable feature of the data obtained with some of the new
recombinant paramyxoviruses is how dependent the phenotype of mutations
is on the host cell involved. In primary bovine skin fibroblasts, we
found that the double mutant (VC
) grew more slowly than RPV C
,
although both virus types grew at the same rate in Vero and B95a cells.
The fibroblasts are slightly poorer hosts for RPV than Vero cells, as
judged by the titer that RPV grows to in these cells (Fig. 4), and it
may be that they lack some necessary host cell protein or have an
excess of some inhibitory protein that particularly exacerbates the
problems caused by the great overproduction of viral genomes relative
to viral envelope proteins in the VC
virus type. The role of host
cell proteins in morbillivirus replication remains relatively
unexplored. In vitro, tubulin has been shown to be required for MV
transcription (47), and a number of host cell proteins have
been shown to bind to the MV V and C proteins (45),
including the binding of damage-specific DNA binding protein to the V
protein (43). One of the heat shock proteins (hsp72) appears
to be a necessary part of the replication complex in canine distemper
virus (48), and yet other host cell proteins have been shown
to bind specifically to the promoter regions of MV (42).
Clearly further information as to the nature of these host cell
proteins and their distribution and availability in different cell
types will be required in order to interpret the cell-type-specific
phenotypes of various virus mutations.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Institute for
Animal Health, Ash Road, Pirbright, Surrey GU24 ONF, United Kingdom. Phone: 44 (0) 1483 232441. Fax: 44 (0) 1483 232448. E-mail:
michael.baron{at}bbsrc.ac.uk.
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Journal of Virology, March 2000, p. 2603-2611, Vol. 74, No. 6
0022-538X/00/$04.00+0
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