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Journal of Virology, March 2000, p. 2510-2524, Vol. 74, No. 6
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Covalent Modification of the Transactivator Protein
IE2-p86 of Human Cytomegalovirus by Conjugation to the
Ubiquitin-Homologous Proteins SUMO-1 and hSMT3b
Heike
Hofmann,
Stefan
Flöss, and
Thomas
Stamminger*
Institut für Klinische und Molekulare
Virologie der Universität Erlangen-Nürnberg, 91054 Erlangen, Germany
Received 4 October 1999/Accepted 22 December 1999
 |
ABSTRACT |
The 86-kDa IE2 protein (IE2-p86) of human cytomegalovirus (HCMV) is
a potent transactivator of viral as well as cellular promoters. Several
lines of evidence indicate that this broad transactivation spectrum is
mediated by protein-protein interactions. To identify novel cellular
binding partners, we performed a yeast two-hybrid screen using a
N-terminal deletion mutant of IE2-p86 comprising amino acids 135 to 579 as a bait. Here, we report the isolation of two ubiquitin-homologous
proteins, SUMO-1 and hSMT3b, as well as their conjugating activity
hUBC9 (human ubiquitin-conjugating enzyme 9) as specific interaction
partners of HCMV IE2. The polypeptides SUMO-1 and hSMT3b have
previously been shown to be covalently coupled to a subset of nuclear
proteins such as the nuclear domain 10 (ND10) proteins PML and Sp100 in
a manner analogous to ubiquitinylation, which we call SUMOylation. By
Western blot analysis, we were able to show that the IE2-p86 protein
can be partially converted to a 105-kDa isoform in a dose-dependent
manner after cotransfection of an epitope-tagged SUMO-1.
Immunoprecipitation experiments of the conjugated isoforms using
denaturing conditions further confirmed the covalent coupling of SUMO-1
or hSMT3b to IE2-p86 both after transient transfection and after lytic
infection of human primary fibroblasts. Moreover, we defined two
modification sites within IE2, located in an immediate vicinity at
amino acid positions 175 and 180, which appear to be used alternatively
for coupling. By using a SUMOylation-defective mutant, we showed that
the targeting of IE2-p86 to ND10 occurs independent of this
modification. However, a strong reduction of IE2-mediated
transactivation of two viral early promoters and a heterologous
promoter was observed in cotransfection analysis with the
SUMOylation-defective mutant. This suggests a functional relevance of
covalent modification by ubiquitin-homologous proteins for IE2-mediated
transactivation, possibly by providing an additional interaction motif
for cellular cofactors.
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INTRODUCTION |
Human cytomegalovirus (HCMV), a
member of the beta subgroup of herpesviruses, is characterized by its
narrow host range and prolonged replicative cycle in cell culture as
well as in the infected human host. Generally, HCMV possesses low
pathogenicity when infecting healthy individuals. However, it is of
considerable clinical importance in immunocompromised patients like
transplant recipients or patients suffering from AIDS as well as in
prenatally infected newborns (2, 3). As found for other
herpesviruses, the lytic cycle gene expression of HCMV occurs in a
sequential fashion. Initially after infection, the immediate-early (IE)
gene products are the first to be synthesized, followed by the early and late gene products (12, 47, 68, 69). IE gene expression, which does not require any prior viral protein synthesis, can be
detected from the UL36-38, US3, TRS1, and major IE gene regions (58, 64, 65). The latter encodes two predominant proteins during the IE phase, the 72-kDa IE1 polypeptide (also called IE1-p72 or
ppUL123) and the 86-kDa IE2 protein (also called IE2-p86 or ppUL122a)
(30, 50, 59). Several additional isoforms of IE2 that arise
either via differential splicing or via the usage of a late promoter
within the IE2 gene region have been described (50, 52, 59).
Both IE1-p72 and IE2-p86 have regulatory functions and have been
proposed to play a pivotal role in the discrimination between
replication and latency. In particular, IE2-p86 appears to play a
master role in triggering the lytic replicative cycle of HCMV (30,
50).
Two main functions of IE2-p86 have been well characterized during the
last years. First, this protein is able to repress transcription of its
own promoter (29, 51), the potent major IE enhancer-promoter of HCMV (8), thus antagonizing its own expression. This
negative autoregulation is mediated by a direct DNA contact of IE2-p86 with a sequence element located between the TATA box and the
transcriptional start site of the enhancer-promoter (38,
40). DNA binding of IE2-p86 at this specific position of the
promoter has been shown to block the association of RNA polymerase II
with the preinitiation complex (39). Second, IE2-p86 is a
strong transactivator of viral early promoters and of several
heterologous promoters, including the human immunodeficiency virus type
1 (HIV-1) long terminal repeat (LTR) (26, 35, 43). The
transactivating function of IE2-p86 is thought to be required for
progression of the replicative cycle from the IE to the early phase.
The mechanism of transactivation has not been defined entirely.
However, since IE2-p86 interacts with the basal transcription factors
TATA-binding protein (26, 56) and TFIIB (10) and
with distinct cellular transcription factors such as CREB, AP-1, Egr-1,
or Spi-1/PU.1 (37, 55, 67, 74), protein contacts are
believed to be essential for transactivation. In addition to the
well-characterized functions of IE2 in transactivation and
autorepression, the demonstration of interactions with the cell cycle
regulatory proteins pRb and p53 suggested that IE2-p86 could also have
an influence on cell cycle regulation (24, 57).
Experimental data indicated that IE2-p86 interacts with several
additional, as yet unidentified cellular proteins (18). Therefore, we decided to perform a yeast two-hybrid screen using a
N-terminally truncated IE2-p86 as a bait in order to identify novel
binding partners of this important regulatory protein. In this study,
we report the isolation of two human ubiquitin-homologous (UbH)
polypeptides, SUMO-1 and hSMT3b, and their conjugating activity hUBC9
(human ubiquitin-conjugating enzyme 9) as interaction partners of IE2.
We demonstrate that IE2-p86 can be modified by covalent coupling to
either SUMO-1 or hSMT3b, resulting in a 105-kDa isoform of IE2 in
transient transfection experiments as well as in infected human
foreskin fibroblasts (HFFs). Furthermore, we were able to precisely
define the modification sites within IE2-p86. Concerning the functional
relevance of IE2-p86 conjugation by SUMO-1 or hSMT3b, we demonstrate
that modification does not affect the subnuclear distribution of
IE2-p86 within nuclear domain 10 (ND10). However, transfection
experiments using an IE2 mutant that can no longer by modified by
SUMO-1 and hSMT3b suggest that a covalent attachment of UbH proteins to
IE2-p86 plays a role for IE2-mediated transactivation.
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MATERIALS AND METHODS |
Oligonucleotides.
Oligonucleotides were obtained from
Eurogentec (Seraing, Belgium) and ARK (Darmstadt, Germany). The
following oligonucleotides (5' to 3' sequences) were used for cloning
and in vitro mutagenesis: IE2pACT5
(AGCTGGATCCTGGGGCATCCGCTACTCCCGA), IE2pACT3
(AGTCGGATCCGAGACTTGTTCCTCAGGTCC), pSC5
(ACCCAAGCTTGGTACCGAGCTCCGCACC), pSC3
(CTAGTCTAGACTGACTAACTAGATGCATGC), SUMOflag5
(AGTCGGATCCTCTGACCAGGAGGCAAAACCT), SUMOflag3
(AGTCTCTAGACTAAACTGTTGAATGACCCCC), SMT3flag5
(AGTCGGATCCGCCGAAAAGCCCAAG), SMT3flag3
(AGTCTCTAGATCAGTAGACACCTCCCGTCTG), IE2-N1
(AGCGAAGCTTGTCGACCTCGAGCCACCAT), IE2-N2
(AGCGAAGCTTGTCGACCTGCGGCCATCAGAGC), IE2-N3
(AGCGAAGCTTGTCGACCCGCATCTCCGAGTTG), C-IE2
(AGCTGAATTCAAGCTTCCCCACGGGTAGGC), 5IE2mut175
(ATGCTGCCCCTCATCCGACAGGAAGACATCAAG), 3IE2mut175
(CTTGATGTCTTCCTGTCGGATGAGGGGCAGCAT), 5IE2mut180
(AAACAGGAAGACATCCGACCCGAGCCCGACTTT), 3IE2mut180
(AAAGTCGGGCTCGGGTCGGATGTCTTCCTGTTT), IE2-180mut175-5
(ATGCTGCCCCTCATCCGACAGGAAGACATCCGA), IE2-180mut175-3 (ACGGATGTCTTCCTGTCGGATGAGGGGCAGCAT), IE2-pQE16A
(AGTCGGATCCATGGAGTCCTCTGCCAAGAG), IE2fImut3
(AGTCGAATTCGAGGGGCAGCATGATAGG), IE2fIImut5
(AGTCGAATTCGAGCCCGACTTTACCATC), IE2fIImut3
(AGTCTCTAGATTACTGAGACTTGTTCCTCAG), PR-ul84A
(GATCGCTAGCGGTGGCCAACCTAGCCTCGG), and PR-ul84B (CAGCCTCGAGTTGGTGTCTGCGGGCGCGAG).
Plasmid constructions and in vitro mutagenesis.
The bait
plasmid pHM247 for the yeast two-hybrid screen was constructed by
isolation of a SmaI/SalI fragment from plasmid pHM134 containing the IE2-p86 cDNA (37) followed by Klenow
treatment and insertion into the NcoI restriction site of
the GAL4 DNA-binding domain vector pAS1 (15), which had also
been filled in by treatment with Klenow enzyme. The yeast vector pHM704
expressing the same IE2-p86 sequence as fusion with the GAL4 activation
domain was constructed by PCR amplification using oligonucleotides
IE2pACT5 and IE2pACT3, followed by cleavage with BamHI and
ligation with the pACT vector (15). The resulting GAL4
fusion proteins comprise amino acids 135 to 579 of IE2-p86. An
expression vector for a GAL4 activation domain fusion protein
containing the viral open reading frame UL84 was created by cleavage of
vector pcDNAUL84 (19) with XbaI followed by
Klenow treatment and thereafter release of the UL84 fragment by
cleavage with EcoRI. The GAL4 activation domain vector
pGAD424 (Clontech, Palo Alto, Calif.) was prepared by cleavage with
SalI followed by Klenow treatment and restriction with
EcoRI. Vector and insert were then ligated, resulting in plasmid pHM379.
To construct a eucaryotic expression vector for epitope-tagged
proteins, the coding sequence for the FLAG epitope was amplified by PCR
using primers pSC5 and pSC3 and plasmid pSuperCATCH (20) as
the template. Conditions for PCR were as described previously (19). The amplified fragment was cleaved with
HindIII/XbaI followed by insertion into the
pcDNA3 vector (Invitrogen Corp., San Diego, Calif.), resulting in
plasmid FLAG-pcDNA3. The SUMO-1 and hSMT3b cDNAs were amplified by PCR
from one of the library clones obtained in the yeast two-hybrid screen,
using either oligonucleotides SUMOflag5 and SUMOflag3 or
oligonucleotides SMT3flag5 and SMT3flag3 as primers. The resulting
fragments were inserted into the FLAG-pcDNA3 vector via
BamHI/XbaI sites.
For mapping of sites modified by SUMO-1 (i.e., SUMOylation sites), the
IE2 deletion mutants IE2(290-548), IE2(310-548), and IE2(329-548) were
generated by PCR amplification using plasmid pHM134 as a template and
oligonucleotides C-IE2 plus IE2-N1, IE2-N2, and IE2-N3, respectively.
The PCR products were cleaved with SalI and EcoRI
and ligated with the pSuperCATCH-NLS vector (20). Site-directed mutagenesis was performed using a QuikChange
site-directed mutagenesis kit as instructed by the manufacturer
(Stratagene, Heidelberg, Germany). The IE2-p86 single amino acid
mutants were constructed using oligonucleotides 5IE2mut175 and
3IE2mut175 (resulting in the mutant IE2mut175 carrying a K-R
substitution at amino acid 175 of IE2-p86) or 5IE2mut180 and 3IE2mut180
(resulting in the mutant IE2mut180 with a K-R substitution at amino
acid 180 in IE2-p86). The IE2 double amino acid mutant IE2mut175+180
was created by using the IE2mut180 plasmid as the template and
oligonucleotides IE2-180mut175-5 and IE2-180mut175-3. The internal IE2
deletion mutant IE2del174-181 was constructed by PCR amplification of
an N-terminal IE2 fragment (nucleotides 139 to 658) using the
oligonucleotides IE2-pQE16A and IE2fImut3 and a C-terminal IE2 fragment
(nucleotides 679 to 1953) using the oligonucleotides IE2fIImut5 and
IE2fIImut3. Thereafter, the N-terminal fragment was inserted into the
pcDNA3 vector using the BamHI and EcoRI
restriction sites, followed by ligation with the C-terminal fragment
via EcoRI/XbaI, thus resulting in an internal
deletion of amino acids 174 to 181 in IE2-p86. The internal IE2
deletion mutant IE86
SX was obtained from D. Spector (San Diego,
Calif.) (56). Construction of a vector expressing IE2 in
fusion with the green fluorescent protein (GFP) will be described
elsewhere. The IE1 expression vector pHM494 was created by isolation of
the IE1 cDNA from plasmid pHM124 followed by insertion into the pcDNA3
vector via HindIII/EcoRI (52). The
luciferase expression plasmids pHM142 containing the UL112/113 promoter
and pHIV-luc containing the HIV LTR have been described previously (5, 19). The luciferase expression plasmid pHM571 containing the UL84 promoter was constructed by PCR amplification of the UL84
promoter sequence (nucleotides 123072 to 123404) using oligonucleotides PR-ul84A and PR-ul84B and cosmid pCM1106 (17) as the
template followed by ligation with luciferase expression vector
pGL3basic (Promega, Mannheim, Germany) via
NheI/XhoI. The DNA sequence of each plasmid
construct was confirmed by automated sequence analysis (ABI,
Weiterstadt, Germany).
Yeast two-hybrid screening.
Yeast two-hybrid screening was
performed using GAL4 fusion proteins as described previously
(16). Saccharomyces cerevisiae Y153 was
transformed by the lithium acetate method using the bait plasmid pHM247
(21). The presence of pHM247 in the yeast cells was stably
maintained by selection for tryptophan prototrophy. Expression of the
GAL4-IE2 fusion protein was confirmed by Western blot analysis using
the IE2-p86 antiserum. Y153 yeast cells transfected with pHM247 alone
or in combination with pACT were then tested for activation of the
reporter genes HIS3 and lacZ. In neither case was
activation of the reporter genes by GAL4-IE2 observed. Yeast strain
Y153 containing pHM247 was subsequently transformed with a cDNA library
derived from human B lymphocytes fused to the GAL4 activation domain in
the pACT vector (15). Primary transformants
(107) were selected for growth on histidine dropout plates
containing 25 mM 3-aminotriazole. His+ colonies were
subsequently analyzed for
-galactosidase activity by filter test
experiments (9). The interaction was then quantified by
o-nitrophenyl galactopyranoside (ONPG) assays as described elsewhere (23). Interactor plasmids from clones positive in both tests were rescued by transformation of competent
Escherichia coli KC8 with total yeast DNA (31).
Interactor plasmids derived from double-positive clones were tested for
bait specificity by retransformation with the GAL4 plasmid pAS1. The
nucleotide sequences of the cDNA inserts were determined by automated
sequence analysis (ABI).
Cell culture, transfection, and reporter assays.
HFFs were
cultured as described previously (5). U373MG and 293 cells
were obtained from the American Type Culture Collection (Manassas, Va.)
and maintained in Dulbecco's minimal essential medium (Gibco/BRL,
Eggenstein, Germany) supplemented with 8 and 10% fetal calf serum,
respectively. The day before transfection, HFFs were plated onto
100-mm-diameter plastic dishes at 1.3 × 106 cells per
dish. 293 cells were seeded onto six-well plates at 3 × 105 cells per well 2 days before transfection. Plasmid
transfections were performed by the calcium phosphate coprecipitation
procedure using
N,N-bis(2-hydroxyethyl)-2-aminoethanesulfonic
acid as described elsewhere (19) and a total of 10 µg of
DNA for 100-mm-diameter dishes or 1 to 2 µg of DNA for six-well
plates. Cells were harvested 48 h after transfection and used for
Western blotting or immunoprecipitation. For indirect
immunofluorescence analysis, HFFs grown on coverslips were transfected
with 2 µg of plasmid DNA using the FuGENE transfection reagent as
specified by the manufacturer (Boehringer, Mannheim, Germany).
For luciferase assays, U373MG cells were plated onto six-well dishes at
2.8 × 105 cells per well the day before transfection.
Plasmid transfection was performed by the DEAE-dextran method as
described previously (5). Routinely, 1 µg of luciferase
target and 2.3 µg of the cotransfected transactivator plasmid were
used. The total amount of transfected DNA was kept constant by using
the cloning vector pCB6 in order to replace the missing transactivator
plasmid. At 48 h after transfection, cells were harvested and
luciferase assays were performed using a lysis buffer containing 50 mM
Tris-H3PO4 (pH 7.8), 50 mM
trans-1,2-diaminocyclohexane-N,N,N',N'-tetraacetic acid, 2% Triton X-100, 4 mM dithiothreitol, and 20% glycerol. Luciferase activity in the supernatant was determined using a luminometer (Bertholt, Freiburg, Germany). Each transfection was performed in triplicate and was repeated at least three times.
Antibodies.
The polyclonal antisera against IE2-p86
(19), exon 5 of IE2-p86 (referred to as anti-pHM178), or
pUL84 of HCMV were generated by immunizing rabbits with the respective
procaryotically expressed proteins. Monoclonal antibody (MAb) 810, which recognizes an epitope contained within exon 2 of both IE1-p72 and
IE2-p86 (46), was obtained from Chemicon (Hofheim, Germany).
The anti-FLAG MAb M2, which is directed against the synthetic FLAG
octapeptide N-Asp-Tyr-Lys-Asp-Asp-Asp-Asp-Lys-C, was purchased from
INTEGRA Bioscience (Fernwald, Germany). MAb p63-27 directed against
IE1-p72 and the anti-Sp26 antiserum directed against Sp100 (kindly
provided by T. Sternsdorf, Hamburg, Germany) were described previously
(4, 61). MAb 21C7 directed against SUMO-1 (45)
was purchased from Zymed Laboratories (Labor Diagnostika, Heiden,
Germany). Anti-mouse and anti-rabbit horseradish peroxidase- or
fluorescein isothiocyanate (FITC)-conjugated secondary antibodies were
obtained from Dianova (Hamburg, Germany).
Western blotting and immunoprecipitation analysis.
Initially, transfected cells were lysed in NP-40 lysis buffer as
described previously (6). For inhibition of deSUMOylation, transfected or infected cells were lysed in 120 µl of a 1:3 dilution of buffer I (5% sodium dodecyl sulfate [SDS], 0.15 M Tris [pH 6.7], 30% glycerol) and buffer II (25 mM Tris [pH 8.2], 50 mM NaCl,
0.5% NP-40, 0.5% deoxycholate, 0.1% SDS, 0.1% azide, 0.1 mM
phenylmethylsulfonyl fluoride, 1 mg each of aprotinin, leupeptin, and
pepstatin per ml) essentially as described elsewhere (13). After a brief sonification, lysates were diluted in SDS Laemmli buffer
and boiled at 94°C for 10 min. Samples were subjected to polyacrylamide gel electrophoresis (PAGE) on SDS-8 to 10%
polyacrylamide gels, and the proteins were transferred onto
nitrocellulose membranes (Schleicher & Schuell, Dassel, Germany).
Western blotting and enhanced chemiluminescence (ECL) detection were
performed according to the manufacturer's protocol (ECL Western
detection kit; Amersham Pharmacia Biotech Europe, Freiburg, Germany).
Coimmunoprecipitation analysis for detection of noncovalent protein
interactions was performed as described elsewhere (6). For
detection of covalent modifications by SUMO-1 or hSMT3b, total cell
lysates were prepared essentially as described elsewhere
(13). Transfected or infected cells were lysed as described
above. After a brief sonification, the lysates were diluted 1:10 in
phosphate-buffered saline (PBS)-0.5% NP-40 followed by high-speed
centrifugation at room temperature. The supernatant was incubated with
the appropriate antibody for 1 h at room temperature; then a 50%
protein A-Sepharose suspension was added for another 2 h at room
temperature. The Sepharose beads were collected and washed three times
in PBS-0.5% NP-40. Antigen-antibody complexes were recovered by
boiling in SDS sample buffer and analyzed by Western blotting.
Indirect immunofluorescence analysis.
For indirect
immunofluorescence analysis, HFF cells on coverslips were washed two
times with PBS followed by fixation with 4% paraformaldehyde for 15 min at room temperature. Cells were permeabilized in PBS-0.2% Triton
X-100 on ice for 20 min. Thereafter, the cells were incubated for 30 min at 37°C with a 1:2,500 dilution of MAb 810 (directed against
IE1-p72 and IE2-p86) and a 1:200 dilution of anti-Sp26 (directed
against Sp100) in PBS, followed by incubation with anti-mouse FITC and
anti-rabbit tetramethyl rhodamine isothiocyanate (TRITC)-conjugated
secondary antibodies. Cells were mounted using Vectashield mounting
medium including 4',6-diamidino-2-phenylindole (DAPI; Vector
Laboratories, Burlingame, Calif.) and analyzed using a Zeiss
Axiovert-135 microscope. Images were recorded with a cooled MicroMax
charge-coupled device camera (Princeton Instruments, Trenton, N.J.) and
processed by using IPLab Spectrum and Adobe Photoshop package
(Scanalytics Inc., Fairfax, Va.; Adobe Systems Incorporated).
 |
RESULTS |
Identification of SUMO-1, hSMT3b, and hUBC9 as cellular interaction
partners of the HCMV IE2 protein by yeast two-hybrid experiments.
To identify novel cellular interaction partners of the IE2 protein of
HCMV, a yeast two-hybrid screen was carried out. Since the full-length
IE2-p86 activated the reporter genes HIS3 and lacZ in yeast by itself, an N-terminal deletion mutant of
IE2-p86 comprising amino acids 135 to 579 was used as a bait in fusion with the DNA-binding domain of the yeast factor GAL4 in the pAS1 vector
(pHM247). The presence of the GAL4-IE2 expression plasmid pHM247 was
maintained stably in yeast strain Y153 by selection in liquid dropout
culture medium lacking tryptophan, and expression of the relevant
fusion protein was confirmed by Western blot analysis (data not shown).
To determine whether the bait protein was able to interact with already
known binding partners in yeast, the pHM247-containing yeast strain
Y153 was transformed with plasmid pHM379 or pHM704, containing either
the UL84 protein of HCMV or an N-terminally truncated IE2 protein
(amino acids 135 to 579) in fusion with the GAL4 activation domain,
respectively. In either case, the reporter genes HIS3 and
lacZ were activated, indicating that the IE2 deletion mutant
was able to interact with pUL84 and was also able to dimerize as
reported in previous publications (data not shown) (11, 19).
The yeast two-hybrid screen was performed by transformation of yeast
strain Y153 containing plasmid pHM247 with a cDNA library derived from
B lymphocytes in the vector pACT (15). This particular library was chosen since it is highly complex and has previously been
used by several groups for the successful isolation of interacting proteins (15). Moreover, since IE2-p86 is able to
transactivate in a broad spectrum of different cell types, our main
interest was to select ubiquitously expressed proteins with a role in
IE2 protein function. By using this screening procedure, 1.25 × 107 primary transformants were tested for interaction with
IE2 by selection for histidine prototrophy on dropout plates
supplemented with 25 mM 3-aminotriazole and by expression of
-galactosidase as determined by filter lift assays. Plasmids
encoding putative interactors of IE2 were isolated from double-positive
clones and retransformed into yeast strain Y153/pHM247 in order to
confirm the interaction. Positive clones after this retransformation
were characterized by automated sequencing and search for homologies in
the National Center for Biotechnology Information databases. In total,
we were able to identify 15 cellular proteins that showed an
interaction with IE2 in yeast. Here, we report the identification of
SUMO-1, hSMT3b, and hUBC9 as specific interaction partners of the IE2
protein (Fig. 1). For these interaction
partners, more than one copy was found in the yeast two-hybrid screen,
indicating a sufficient complexity of the cDNA library and the
specificity of the interaction with IE2. By cotransformation
experiments of the individual interactor clones and the empty pAS1
vector, it was excluded that SUMO-1, hSMT3b, and hUBC9 were able to
activate the reporter genes in yeast in the absence of a bait protein
(Fig. 1A). Additionally, liquid
-galactosidase assays (ONPG assays) were performed to quantify the strength of interaction with IE2 (Fig.
1B). Interestingly, the interaction between IE2 and SUMO-1 turned out
to be even stronger than the interaction between p53 and the simian
virus 40 (SV40) T antigen, which served as a positive control.

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FIG. 1.
Specific interaction between HCMV IE2(135-579) and
hUBC9, hSMT3b, and SUMO-1 in yeast. Yeast cells were transformed with
two separate vectors, one of which encoded either IE2(135-579) fused to
the GAL4 DNA-binding domain (IE2pAS1) or the DNA-binding domain alone
(pAS1). The second plasmid encoded either the GAL4 activation domain
alone (pACT) or hUBC9, hSMT3b, and SUMO-1 as fusions with the GAL4
activation domain, (plasmids hUBC9 pACT, hSMT3b pACT, and SUMO-1 pACT,
respectively). Yeast colonies were selected for the presence of both
plasmids with dropout media lacking tryptophan and leucine and
subsequently analyzed for the expression of -galactosidase. The
association of murine p53 (encoded by plasmid pVA3; Clontech) and SV40
large T antigen (plasmid pTD1; Clontech) served as a positive control.
(A) Qualitative analysis of interactions between IE2 (135-579) and
hUBC9, hSMT3b, and SUMO-1 as determined in filter lift experiments
after staining for -galactosidase activity. (B) Quantitation of the
association between IE2(135-579) and hUBC9, hSMT3b, and SUMO-1 as
determined by liquid -galactosidase assays (ONPG assays).
Cotransformation experiments were performed as for panel A. -Galactosidase activity was assayed from liquid cultures in at least
three independent experiments, each with duplicate samples. The
-galactosidase activity of yeast cells transformed with a vector
combination encoding murine p53 and SV40 large T antigen was set as
100.
|
|
The interactors SUMO-1 and hSMT3b belong to the family of UbH proteins
(7, 44). They were shown to be covalently attached to a
variety of nuclear targets in a manner analogous to protein ubiquitinylation (32, 34), which involves hUBC9 (32,
54). Thus, the simultaneous identification of SUMO-1, hSMT3b, and
hUBC9 as interacting proteins of IE2 suggested that IE2-p86 might be a
target for posttranslational modification by coupling to SUMO-1 or hSMT3b.
Evidence for a covalent modification of IE2 by SUMO-1 and
hSMT3b.
Having identified the ubiquitin-like proteins SUMO-1 and
hSMT3b as potential interaction partners of HCMV IE2 in the yeast two-hybrid screen, we searched for physiological situations in mammalian cells in which IE2-p86 is covalently modified by SUMO-1 or
hSMT3b. For this purpose, both the SUMO-1 and the hSMT3b cDNA were
expressed as FLAG-tagged proteins using the FLAG-pcDNA3 expression vector. 293 cells were transfected with the FLAG-hSMT3b or, as shown in
Fig. 2, with the FLAG-SUMO-1 expression
vector either alone or in combination with the IE2-p86 expression
plasmid pHM134. After lysis of cells using NP-40 buffer, proteins were
analyzed by Western blotting. The IE2 protein was detected using the
anti-IE86 rabbit serum (19) (Fig. 2A). In lysates from cells
expressing IE2-p86 and increasing amounts of FLAG-SUMO-1, the IE2
86-kDa protein was detected as well as an additional 105-kDa isoform which is fairly consistent with a 20-kDa covalent modification of
IE2-p86 by FLAG-SUMO-1. After removal of the IE2-specific antibodies, the same membrane was incubated with MAb M2 directed against the FLAG
epitope in order to investigate whether this 105-kDa band contained
FLAG-SUMO-1 (Fig. 2B). In lanes 2 and 4 to 6 we observed a smear toward
higher-molecular-weight proteins representing FLAG-SUMO-1-conjugated cellular proteins as described previously (42, 45). The
90-kDa band which could be detected in the absence as well as in the presence of cotransfected IE2 most probably represents the p90 form of
RanGAP1 (45). Only in the presence of IE2-p86 did we detect
an additional immunoreactive band of 105 kDa which perfectly overlapped
with the IE2-immunoreactive 105-kDa band shown in Fig. 2A.

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FIG. 2.
Covalent interaction between IE2-p86 and FLAG-SUMO-1 in
293 cells. 293 cells were transfected either with the empty eucaryotic
expression vector pCB6, the FLAG-SUMO-1 expression vector, or plasmid
pHM134 (encoding IE2-p86) either alone or in combination as indicated.
Cells in panels A and B were lysed using NP-40 lysis buffer, whereas
lysates in panels C and D were prepared under denaturing conditions
using SDS lysis buffer. The lysates were fractionated by SDS-PAGE (8%
gel) and analyzed by Western blotting. (A) Western blot analysis of
cell lysates using the IE2-p86 polyclonal antiserum. (B) Incubation of
the same filter membrane as in panel A, using the anti-FLAG MAb. Lanes:
1, transfection with expression vector pCB6 alone; 2, transfection with
the FLAG-SUMO-1 expression vector alone; 3, transfection with plasmid
pHM134 (encoding IE2-p86) alone; 4 to 6, transfection with a constant
amount of plasmid pHM134 and increasing amounts of plasmid
pFLAG-SUMO-1. (C and D) Western blot analyses of cell lysates using the
IE2-p86 polyclonal antiserum (C) or MAb 810 (D). Lanes: 1, transfection
with vector pCB6 alone; 2, transfection with plasmid pHM134 alone; 3, transfection with a combination of plasmids pHM134 and pFLAG-SUMO-1.
The IE2-p86 modification by an endogenous UbH moiety is indicated by a
closed circle; the modification by cotransfected FLAG-SUMO-1 is
depicted by an open circle.
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Referring to experiments as described by Desterro et al.
(13), in which I
B
-SUMO-1 conjugates were rarely
detectable after cell lysis using NP-40 lysis buffer, we performed
analogous transfection experiments but lysed the cells in 1.7% SDS
buffer (13). Again, Western blot analyses were performed
with the IE2-p86 antiserum (Fig. 2C). Under conditions of SDS lysis, a
105-kDa IE2 isoform was already observable in the absence of
FLAG-SUMO-1, whereas after cotransfection with FLAG-SUMO-1 we detected
a second band with slightly slower electrophoretic mobility,
representing the IE2/FLAG-SUMO-1 conjugate because of additional amino
acids derived from vector sequences and the FLAG epitope (Fig. 2C and
D, lanes 2). To exclude artifacts from the antiserum, we repeated this experiment using the same lysates and MAb 810, which is directed against an amino-terminal epitope contained within both IE1-p72 and
IE2-p86 (45) (Fig. 2D). Similarly, an endogenous
modification of IE2 was visible after transfection of the IE2-p86
expression vector pHM134 alone, which resolved in a double band after
additional cotransfection of FLAG-SUMO-1. Analogous cotransfection
experiments with IE2-p86 and FLAG-hSMT3b followed by Western blot
analysis showed comparable results (data not shown). Taken together,
these experiments indicate that IE2-p86 can be covalently modified
after coexpression of FLAG-SUMO-1 or FLAG-hSMT3b. Furthermore, an IE2 isoform of similar molecular weight can be observed when IE2 is expressed alone in 293 cells.
As the major IE proteins IE1-p72 and IE2-p86 of HCMV have the first 85 amino acids in common, we wished to determine whether IE1-p72 is also
modified by SUMO-1 or hSMT3b. Therefore, analogous cotransfection
experiments were performed with the IE1-p72 expression vector pHM494
and FLAG-SUMO-1 or FLAG-hSMT3b in 293 cells. Both HCMV IE proteins were
detected using MAb 810. As is evident from Fig. 3A, lanes 2 and 3, IE1-p72 could likewise be covalently modified by both FLAG-SUMO-1 and
FLAG-hSMT3b. However, in contrast to IE2-p86 (Fig. 3A, lane 7), no
endogenous modification of IE1-p72 was detectable in the absence of the
FLAG-UbH proteins under these conditions.
This result led us to question whether SUMOylation after overexpression
is a general feature of viral regulatory proteins. Therefore, we tested
if modification of three additional viral proteins could be observed in
the presence of FLAG-SUMO-1 or FLAG-hSMT3b. However, in contrast to
IE1-p72 and IE2-p86, no conjugation was detectable for the viral
protein pUL26, pUL69 (data not shown), or pUL84 (Fig.
3B), indicating that SUMOylation is
restricted to the major IE proteins of HCMV.

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FIG. 3.
Analysis of covalent modification of HCMV IE1-p72 and
pUL84 by FLAG-SUMO-1 and FLAG-hSMT3b, respectively. 293 cells were
transfected with expression vectors encoding IE1-p72, pUL84, or
FLAG-SUMO-1/hSMT3b as indicated and lysed in SDS lysis buffer. Cell
extracts were resolved by SDS-PAGE (10% gel) and subjected to
immunoblotting using MAb 810 directed against a N-terminal epitope
shared by IE1-p72 and IE2-p86 (A) or a polyclonal antiserum directed
against HCMV pUL84 (B). (A) Lanes: 1, transfection with the IE1-p72
expression vector alone; 2, transfection with a combination of vectors
encoding IE1-p72 and FLAG-SUMO-1; 3, transfection with a combination of
vectors encoding IE1-p72 and FLAG-hSMT3b; 4, transfection with vector
pCB6 alone; 5, transfection with plasmid pFLAG-SUMO-1 alone; 6, transfection with plasmid pFLAG-hSMT3b alone; 7, transfection with
plasmid pHM134 (encoding IE2-p86) alone. (B) Lanes: 1, transfection
with vector pCB6 alone; 2, transfection with plasmid pFLAG-SUMO-1
alone; 3, transfection with plasmid pFLAG-hSMT3b alone; 4, transfection
with UL84 expression vector pcDNAUL84 alone; 5, transfection with a
combination of pcDNAUL84 and pFLAG-SUMO-1; 6, transfection with a
combination of pcDNAUL84 and pFLAG-hSMT3b. Sizes are indicated in
kilodaltons.
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Immunoprecipitation of IE2-UbH conjugates under denaturing
conditions confirms the covalent nature of the interaction.
To
further strengthen the evidence for a covalent modification of IE2-p86
by SUMO-1 and hSMT3b, we performed cotransfection experiments in 293 cells followed by immunoprecipitation with the IE2-p86 antiserum.
Conjugates between IE2-p86 and either FLAG-SUMO-1 or hSMT3b were then
detected by Western blot analyses of the precipitates using the
anti-FLAG MAb (Fig. 4). Here as well as
in the following immunoprecipitation experiments, an aliquot of each
sample was analyzed by Western blotting prior to immunoprecipitation in
order to confirm that equal amounts of protein had been expressed (data not shown). The well-characterized interaction between IE2 and the
UL84-protein of HCMV (19) served as a positive control (Fig. 4A and B, lanes 1). As the binding of IE2-p86 to pUL84 is of
noncovalent nature, cells were lysed using NP-40 lysis buffer, whereas
cells expressing IE2 and FLAG-SUMO-1 or FLAG-hSMT3b were lysed
essentially as described by Desterro et al. (13). As shown
in Fig. 4A, lane 2, the noncovalent interaction between IE2 and pUL84
was not observed under those denaturing conditions. On the other hand,
the attachment of FLAG-hSMT3b to IE2 was detected after cotransfection
of a constant amount of the IE2-p86 expression vector in combination
with increasing amounts of the FLAG-hSMT3b construct (Fig. 4A, lanes 5 to 7). Surprisingly, two additional bands with calculated molecular
masses of about 130 and 150 kDa could be observed apart from the
105-kDa IE2-hSMT3b conjugate in Western blot analysis (Fig. 4A, lanes 5 to 7).

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FIG. 4.
Evidence for a covalent modification of HCMV IE2-p86 by
SUMO-1 and hSMT3b in immunoprecipitation experiments. 293 cells were
transfected with an expression vector encoding IE2-p86,
FLAG-SUMO-1/hSMT3b, or FLAG-UL84 as indicated and prepared for
immunoprecipitation as described in Materials and Methods.
Immunoprecipitations were performed with the IE2-p86 antiserum or the
IE2-p86 preimmune serum, as indicated by bars. Precipitates were washed
three times and separated by SDS-PAGE (10% gel). Thereafter,
coprecipitated interactor proteins were detected by Western blot
analysis using the anti-FLAG MAb. The interaction between IE2-p86 and
FLAG-UL84 served as a positive control. Asterisks depict the two
additional anti-FLAG reactive bands in IE2-UbH precipitates. (A)
Western blot analysis of precipitated IE2-hSMT3b conjugates. Lanes: 1, cell lysis under native lysis conditions; 2 to 8, cell lysis under
denaturating conditions. Transfection was performed with plasmids
encoding FLAG-UL84 and IE2-p86 (lanes 1 and 2), IE2-p86 alone (lane 3),
FLAG-hSMT3b alone (lane 4), and IE2-p86 and FLAG-hSMT3b (lanes 5 to 8).
(B) Western blot analysis of precipitated IE2-SUMO-1 conjugates. Lanes:
1, cell lysis under native lysis conditions; 2 to 5, cell lysis under
denaturating conditions. Transfection was performed with plasmids
encoding FLAG-UL84 and IE2-p86 (lane 1), FLAG-SUMO-1 alone (lane 2),
FLAG-SUMO-1 and IE2-p86 (lanes 3 and 4), and IE2-p86 alone (lane 5).
Here and in subsequent figures, sizes are indicated in kilodaltons, and
IgG and IP stand for immunoglobulin G and immunoprecipitation,
respectively.
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Analogous experiments were performed after cotransfection of IE2-p86
and FLAG-SUMO-1 (Fig. 4B). Again, the 105-kDa IE2-SUMO-1 conjugate was
detected by the anti-FLAG antibody in Western blot analysis (Fig. 4B,
lane 3); two additional bands with calculated molecular masses of 130 and 150 kDa were also present (Fig. 4B, lane 3, indicated by
asterisks). These two bands seem to be specific because they were
observed only in the presence of both IE2-p86 and FLAG-SUMO-1 or
FLAG-hSMT3b and were not observed in cell lysates either expressing
IE2-p86 or the FLAG-UbH protein alone. Surprisingly, however, these
bands could not be detected when Western blots were performed with
IE2-specific MAbs or sera, suggesting that they do not represent
additional IE2 conjugates (data not shown; Fig.
5C). In summary, these results confirm a
covalent conjugation of FLAG-SUMO-1 and FLAG-hSMT3b to the HCMV IE2-p86
protein.

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FIG. 5.
Evidence for a covalent modification of HCMV IE2-p86 in
infected HFFs. (A) Western blot analysis using lysates from infected
HFFs and transfected 293 cells. HFFs were either mock infected or
infected with the laboratory strain AD169 for the indicated time
periods. Cells were lysed in SDS sample buffer, and the lysates were
fractionated by SDS-PAGE (10% gel) followed by Western blot analysis
using the anti-pHM178 polyclonal antiserum directed against exon 5 of
IE2-p86. Lanes: 1, lysate from mock-infected HFFs; 2 to 6, lysates from
HFFs that were infected with HCMV for 6, 24, 30, 48, and 72 h,
respectively; 7 to 8; lysates from HFFs that were infected with HCMV
for 48 and 72 h, respectively; 9, lysate from 293 cells that were
transfected with the IE2-p86 expression vector pHM134. The 105-kDa
isoform of IE2 is indicated by a closed circle. (B to D)
Immunoprecipitation of IE1 or IE2 conjugates from HCMV-infected HFFs.
HFFs were transfected with an expression vector encoding FLAG-SUMO-1 or
FLAG-hSMT3b. The day after transfection, cells were either mock
infected or infected with HCMV strain AD169 for 72 h as indicated.
Thereafter, immunoprecipitation was performed with MAb 810, recognizing
an epitope common to both IE2-p86 and IE1-p72. Western blot analysis
was performed using the anti-FLAG MAb in order to detect SUMO-1 or
hSMT3b (B), the IE2-p86 polyclonal antiserum in order to detect IE2
proteins (C), and MAb p63-27 in order to detect IE1 proteins (D).
Transfection of HFFs was performed with plasmids encoding either
FLAG-SUMO-1 (lanes 1 and 2) or FLAG-hSMT3b (lane 3). The modification
of IE2-p86 by the FLAG-UbH proteins is indicated by open circles.
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Covalent modification of IE2-p86 by SUMO-1/hSMT3b occurs also
during the replicative cycle of HCMV.
Having demonstrated that
HCMV IE2-p86 is conjugated by UbH proteins in 293 cells, we wanted to
investigate whether a similar modification also occurs in infected
primary HFFs. Therefore, we analyzed lysates from infected HFFs 6, 20, 27, 48, and 72 h after infection by Western blotting using the
anti-pHM178 rabbit antiserum which is directed against amino acid
sequences encoded by exon 5 of IE2-p86. As shown in Fig. 5A, a 105-kDa
IE2 subform was also observed during the whole time course of lytic
infection, detectable already at 6 h after infection. This subform
is similar in electrophoretic mobility to extracts from IE2-expressing
293 cells (Fig. 5A, lanes 8 and 9).
To further determine whether SUMO-1 or hSMT3b modification of IE2-p86
occurs in infected cells, HFFs were transfected with FLAG-SUMO-1 or
FLAG-hSMT3b. The day after transfection, cells were either mock
infected or infected with HCMV for 72 h. Thereafter, immunoprecipitations were performed with MAb 810. In Western blot analysis with the anti-FLAG MAb, a 105-kDa FLAG-reactive band was
detected in precipitates containing either FLAG-SUMO-1 or FLAG-hSMT3b;
as already observed after immunoprecipitation analysis of 293 cell
lysates, the two higher-molecular-mass forms of 130 and 150 kDa could
also be detected (Fig. 5B, lanes 2 and 3). To determine which bands as
detected by the anti-FLAG antibody contained the IE2 protein, an
identical immunoprecipitation with MAb 810 was performed followed by
Western blotting using the IE2-p86 specific rabbit antiserum. As can be
seen in Fig. 5C, lanes 2 and 3, the 86- and 105-kDa IE2 isoform, but no
higher-molecular-mass bands of 130 or 150 kDa, were detected with the
IE2-specific antiserum, indicating that the higher-molecular-mass
anti-FLAG reactive bands do not represent additional IE2 isoforms. In
contrast, no modification of IE1-p72 could be observed during viral
infection using the same immunoprecipitation conditions followed by
Western blot analysis with an IE1-specific MAb (Fig. 5D, lanes 2 and
3). These experiments confirm that IE2-p86 modification by SUMO-1 or
hSMT3b can also occur in infected human fibroblasts. Furthermore, the
modification of the two major IE proteins of HCMV seems to be
differentially regulated, as IE2-p86 is modified during the complete
replication cycle whereas IE1-p72 conjugates are not detectable at
72 h after infection under those conditions.
Mapping of the SUMO-1/hSMT3b conjugation site within the HCMV IE2
protein identifies lysine residues 175 and 180 as two independent
acceptor sites for modification.
Having shown that IE2-p86 can be
modified by both SUMO-1 and hSMT3b in 293 cells as well as in infected
HFFs, we were interested in mapping the precise conjugation site within
IE2-p86. For this, a series of N- and C-terminal IE2 deletion mutants
was created (Fig. 6A). The C-terminal
deletion mutants IE2(290-548), IE2(310-548), and IE2(329-548) were
cloned into the pSuperCATCH-NLS vector in order to ensure a nuclear
localization of the encoded proteins. This was done since a recent
study suggested that a nuclear localization of a given target protein
is necessary for SUMOylation (62). As determined by indirect
immunofluorescence analysis, all constructs exhibited a strictly
nuclear localization (data not shown). Then, each of the constructs was
cotransfected with FLAG-SUMO-1 or FLAG-hSMT3b in 293 cells followed by
Western blot analysis with the IE2-p86 antiserum in order to examine
whether the mutants were still conjugated (data not shown). Thus, we
were able to map the conjugation domain in IE2 between amino acid 173 and 290 (Fig. 6A).

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FIG. 6.
Mapping of lysine residues responsible for SUMOylation
of HCMV IE2-p86. (A) Schematic overview depicting the IE2 deletion
mutants used. Lysine residues in IE2-p86 are indicated by arrows; the
positions of nuclear localization signals (NLS) within IE2 are also
indicated. The eucaryotic expression vectors were transfected into 293 cells either alone or in combination with FLAG-SUMO-1 and analyzed for
conjugation by Western blotting, indicated by + (conjugation
detectable) or (no conjugation observed). The IE2 mutants
comprising amino acids 290 to 548, 310 to 548, and 329 to 548 were
cloned into the pSuperCATCH-NLS vector to ensure nuclear localization.
(B) Sequence similarity analysis between already determined SUMOylation
sites in cellular proteins and HCMV IE2-p86. The proposed SUMOylation
consensus motif is indicated by boxes; the lysine residues responsible
for isopeptide bond formation are shaded darker.
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Peptide sequence similarity analysis within this domain showed a
striking homology between amino acids 169 to 182 of IE2-p86 and the
already published SUMO-1 conjugation site in RanGAP1 (42). In addition, this sequence also exhibits similarities to the respective SUMOylation sites within I
B
, Sp100, and PML (Fig. 6B) (13, 33, 62). Sternsdorf et al. (62) proposed the consensus
sequence (I/L)KxE for SUMOylation in which the lysine residue is linked to the ubiquitin-like moiety (62). Interestingly, two
(I/L)KxE motifs could be found in IE2-p86 within amino acids 169 to
182, in which both lysine 175 and lysine 180 might serve as acceptors for conjugation independently. To further investigate this amino acid
sequence, we performed a PCR mutagenesis by which we replaced either
lysine 175 (IE2mut175) or lysine 185 (IE2mut180) separately or both
simultaneously (IE2mut175+180) by arginine. The replacement of lysine
by arginine was chosen in order to maintain a basic charged residue at
each amino acid position. Additionally, we created an IE2 mutant with
an internal deletion of amino acid residues 174 to 181 (IE2del174-181)
(Fig. 7A). All mutants were transfected
into 293 cells in the absence or presence of FLAG-SUMO-1, and cell
lysates were analyzed by Western blotting using the IE2-p86 antiserum
(Fig. 7B). As observed for wild-type IE2, each of the lysine single
point mutants was still modified by an endogenous moiety in the absence
of FLAG-SUMO-1 (Fig. 7B, lanes 2, 4, and 6) and could also be
conjugated with FLAG-SUMO-1, which again resulted in a doublet at 105 kDa (lanes 3, 5, and 7). In contrast, neither the internal deletion
mutant IE2del174-181 nor the double amino acid point mutant
IE2mut175+180 was modified (lanes 8 to 11).

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FIG. 7.
Interaction of IE2-p86 amino acid mutants with UbH
proteins. (A) Schematic overview of the amino acid deletions or
substitutions in IE2-p86 generated by PCR mutagenesis. Potential
SUMOylation consensus motifs are indicated by boxes. (B) Western blot
analysis of the individual IE2-p86 mutants. 293 cells were transfected
with expression vectors encoding either wild-type IE2-p86 or the
individual mutants alone or in combination with a vector encoding
FLAG-SUMO-1 as indicated. Cell lysates were analyzed by immunoblotting
using the IE2-p86 polyclonal antiserum. Lanes: 1, transfection with a
vector encoding FLAG-SUMO-1 alone; 2, transfection with IE2-p86
expression vector pHM134; 3, transfection with pHM134 and pFLAG-SUMO-1;
4, transfection with a vector encoding IE2mut175 alone; 5, transfection
with pIE2mut175 and pFLAG-SUMO-1; 6, transfection with a vector
encoding IE2mut180 alone; 7, transfection with pIE2mut180 and
pFLAG-SUMO-1; 8, transfection with a vector encoding IE2del174-181
alone; 9, transfection with pIE2del174-181 and pFLAG-SUMO-1; 10, transfection with a vector encoding IE2mut175+180 alone; 11, transfection with pIE2mut175+180 and pFLAG-SUMO-1. The IE2-p86
modification by an endogenous UbH moiety is indicated by a closed
circle; the modification by cotransfected FLAG-SUMO-1 is depicted by an
open circle.
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To further confirm these results, we performed immunoprecipitations
after cotransfection of the individual mutants in combination with
FLAG-SUMO-1 or FLAG-hSMT3b. Consistent with the observations of Western
blot experiments, the single amino acid mutants IE2mut175 and IE2mut180
were still conjugated with FLAG-SUMO-1 or FLAG-hSMT3b (Fig.
8A, lanes 7, 8, 11, and 12), whereas the
internal deletion mutant as well as the double amino acid mutant
IE2mut175+180 were not modified by either of the two UbH proteins
(lanes 14, 15, 18, and 19). In contrast, all IE2 mutants were still
able to interact with FLAG-UL84 under native lysis conditions (lanes 5, 9, 13, and 17), indicating that the conformation of the IE2-protein was not severely affected by the introduced mutations. This was further strengthened by coimmunoprecipitation experiments after transfection of
the IE2 mutants in combination with a FLAG-tagged, N-terminally truncated IE2 mutant lacking the epitope as recognized by the IE2 MAb
810. After precipitation with MAb 810, this FLAG-tagged IE2 could be
detected in Western blot analysis using the anti-FLAG antibody,
indicating that all mutants were still able to dimerize (Fig. 8B).

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FIG. 8.
Analysis of IE2-p86 mutants by immunoprecipitation
experiments. 293 cells were transfected with the indicated expression
vectors, and immunoprecipitations were performed using the IE2-p86
polyclonal antiserum or preimmune serum (A) or MAb 810 (panel B). (A)
Conjugation of IE2-p86 mutants with UbH proteins. Coprecipitated
interactor proteins were detected in Western blot experiments using the
anti-FLAG MAb M2. For lanes 5, 9, 13, and 17, cell lysis was performed
with NP-40 lysis buffer; for all other lanes, SDS-containing buffer was
used (see Materials and Methods). (B) Evidence for dimerization
capability of the individual IE2-p86 mutants. 293 cells were
transfected with a vector encoding an N-terminally truncated
IE2-protein [FLAG-IE2(135-579)] in combination with expression
vectors for either IE2-p86 wild-type protein (wtIE2) or a mutated
variant of IE2 (IE2mut175, IE2mut180, IE2del174-181, or IE2mut175+180).
Cells were lysed in NP-40 lysis buffer, and immunoprecipitations were
performed with MAb 810, which recognizes an N-terminal epitope within
IE2-p86 or the individual mutants that are not contained in the
FLAG-IE2(135-579) protein (see panel C). Thereafter, Western blot
analysis was performed using the anti-FLAG MAb in order to specifically
detect the FLAG-IE2(135-579) protein.
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These experiments demonstrate that the SUMO-1/hSMT3b conjugation site
within IE2 is located between amino acids 174 and 181. Within this
sequence, two separate modification sites (K175 and K180) could be identified.
SUMOylation is not necessary for colocalization of IE2 with
ND10.
As published previously, both IE1 and IE2 proteins of HCMV
are targeted to ND10 domains within a few hours after infection (1, 36, 71). For PML, the first identified ND10-associated protein, it was observed that SUMOylation is required for its accumulation in these subnuclear domains (49). Having
generated an IE2 mutant which is no longer conjugated by SUMO-1 and
hSMT3b, we addressed the question of whether SUMOylation affects the
targeting of IE2-p86 to ND10 structures. For this purpose, wild-type
IE2-p86 fused to GFP (IE2-GFP) and the IE2 mutants described before
were transfected into HFFs. Immunofluorescence analysis was carried out
using the Sp26 antiserum recognizing Sp100 in order to detect endogenous ND10 structures and MAb 810 to detect the IE2 mutants. Wild-type IE2 was visible through its GFP moiety. As evident from Fig.
9, wild-type IE2-p86 and the single amino
acid mutants exhibited a diffuse nuclear staining with some brighter
speckles correlating with Sp100 localization (Fig. 9A to F).
Transfection of the double amino acid mutant that is defective for
SUMO-1 or hSMT3b conjugation resulted in a predominantly speckled
nuclear staining that showed a perfect colocalization with Sp100
nuclear dots. Thus, modification by either SUMO-1 or hSMT3b is not a
determinant for accumulation of IE2-p86 within ND10 structures.

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FIG. 9.
Subcellular localization of IE2-p86 and mutant IE2
proteins in HFFs. HFFs grown on coverslips were transfected with
expression vectors encoding the wild-type IE2-p86 protein fused to GFP
(A and B) or IE2 mutant IE2mut175 (C and D), IE2mut180 (E and F), or
IE2mut175+180 (G and H). Indirect immunofluorescence was performed with
MAb 810 and an FITC-conjugated anti-mouse secondary antibody in order
to detect the IE2 mutants (C, E, and G). Wild-type IE2 was detected
through its GFP moiety (A). Additionally, costaining was performed with
a polyclonal Sp26 antiserum directed against Sp100 and a
TRITC-conjugated anti-rabbit conjugated secondary antibody in order to
detect ND10 (B, D, F, and H).
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Influence of the SUMO-1/hSMT3b modification on IE2-mediated
transactivation.
Since IE2-p86 is known as a strong transactivator
of viral as well as cellular promoters, we addressed the question of
whether the IE2 mutants described above showed any difference in
transcriptional activity compared with wild-type IE2-p86. For this
purpose, permissive U373MG cells were transiently transfected with
reporter plasmids containing the luciferase gene under the control of
two IE2-responsive early promoters of HCMV. The first reporter
construct, termed pHM142, contained the UL112/113 promoter which had
previously been described as a highly IE2-responsive element (5,
56). The second plasmid, pHM571, contained the promoter driving
expression of the UL84 gene of HCMV, which is also strongly
transactivated by IE2-p86 (S. Flöss and T. Stamminger,
unpublished data). After cotransfection of these reporter plasmids with
either the wild-type IE2-p86 expression vector pHM134 or the IE2
mutants IE2mut175, IE2mut180, and IE2mut175+180, luciferase activity
was determined in cell extracts. Each experiment was performed in
triplicate and repeated at least three times. Transcriptional
activation was determined by calculating fold activation based on the
activity of the reporter plasmids after cotransfection with the
expression vector pCB6 containing the HCMV IE1/2 enhancer-promoter
without a coding sequence. As shown in Fig.
10, both reporter constructs were
activated by wild-type IE2 approximately 230- to 300-fold. There was no
significant difference of activation mediated by IE2mut175 and
IE2mut180 compared to wild-type IE2. In contrast, a strong decrease in
activation mediated by IE2mut175+180 was observed for both promoters
that were tested. Sommer et al. (56) had shown in a previous
study using the UL112/113 promoter in U373MG cells that an internal
deletion of amino acids 135 to 290 (in mutant IE86
SX) within IE2-p86
reduced the transactivation potential about 50% (56). We
therefore included this mutant, kindly provided by D. Spector (San
Diego, Calif.) in our luciferase experiments. As is evident from Fig.
10, there is no significant difference in stimulation of the
UL112/113-promoter mediated by IE2mut175+180 compared to the IE86
SX
mutant or the internal deletion mutant IE2del174-181. A similar
reduction in transactivation was observed when we used the HIV LTR as a
heterologous promoter in combination with the SUMOylation-defective
mutants of IE2-p86 (Fig. 10C). Western blot experiments excluded that a
reduced expression level of the mutant proteins was responsible for
their loss of transactivation capacity (Fig. 10D). In summary, these
results suggest that a covalent modification of IE2-p86 by UbH proteins is critical for the transactivation capacity of IE2-p86.

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FIG. 10.
Luciferase analysis after cotransfection of luciferase
reporter constructs carrying viral early promoters or the HIV-1 LTR
with expression plasmids for various IE2 mutants. U373MG cells were
transfected with luciferase reporter constructs carrying the viral
early promoters of the UL112/113 gene region (A, lanes 1 to 7), the
UL84 gene (B, lanes 1 to 6), or the HIV LTR (C, lanes 1 to 6). Lanes:
1, cotransfection was performed with the empty expression vector pCB6;
2, cotransfection was performed with expression vector pHM134 encoding
wild-type IE2-p86; 3, cotransfection was performed with the expression
vector for IE2 mutant IE2mut175; 4, cotransfection was performed with
the expression vector for IE2 mutant IE2mut180; 5, cotransfection was
performed with the expression vector for IE2 mutant IE2mut175+180; 6, cotransfection was
performed with the internal deletion mutant IE2del174-181; 7, cotransfection was performed with the internal deletion mutant
IE86 SX (kindly provided by D. Spector) (56). Each
experiment was performed in triplicate and was repeated at least three
times. Fold activation was calculated relative to the basal activity of
each reporter construct after cotransfection with the empty pCB6
vector. (D) Western blot analysis of 293 cell extracts after
transfection of various IE2 expression plasmids using the IE2-specific
MAb 810. Lanes: 1, transfection was performed with expression vector
pCB6; 2, transfection was performed with vector pHM134; 3, transfection
was performed with the vector encoding IE2mut175; 4, transfection was
performed with the vector encoding IE2mut180; 5, transfection was
performed with the vector encoding IE2mut175+180; 6, transfection was
performed with the internal deletion mutant IE2del174-181; 7, transfection was performed with the internal deletion mutant
IE86 SX.
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DISCUSSION |
The IE2-p86 protein of HCMV is a multifunctional regulator of
viral as well as cellular gene expression. Protein-protein interactions are thought to play a major role in IE2-mediated regulation of this
broad spectrum of promoters, and it has been reported that IE2-p86 is
able to interact with at least 15 cellular factors (18),
some of which have been identified. Known interaction partners include
members of the basal transcription machinery such as TATA-binding
protein and TFIIB (10, 25), several transcription factors
(e.g., AP-1, Egr-1, and CREB) (37, 55, 74), and the cell
cycle regulators pRb and p53 (24, 57). However, since the
majority of those binding partners are still unknown, we performed a
yeast two-hybrid screen using the carboxy terminus of IE2 as a bait. An
N-terminally truncated protein was chosen since this IE2 version
lacking the N-terminal acidic transcriptional activation domain did not
activate the reporter genes in yeast when fused to the GAL4 DNA-binding
domain. In addition, published data indicate that the C terminus of IE2
as used in our yeast two-hybrid screen contains important protein
interaction motifs (10, 24, 56). Furthermore, we were able
to observe an interaction of this bait construct after coexpression
with the viral UL84 protein fused to the GAL4 activation domain as well
as a dimerization with an IE2-GAL4 activation domain fusion protein.
This suggests a native conformation of the bait protein in fusion with
the GAL4 DNA-binding domain which allows for an interaction with other proteins.
Using the yeast two-hybrid screen, we were able to isolate several
copies of two polypeptides termed SUMO-1 and hSMT3b as well as the
hUBC9 enzyme as specific interaction partners of IE2 in yeast. The
proteins SUMO-1 and hSMT3b are highly homologous, being 46% identical
on the amino acid level. Since they exhibit a low but significant
homology to ubiquitin, they are referred to as UbH proteins (7,
44, 45). Similar to ubiquitin, these two UbH polypeptides can be
covalently attached to a variety of mostly nuclear target proteins by
an enzymatic process with analogy to protein ubiquitinylation (32,
34). This covalent linkage involves the hUBC9 enzyme, a member of
the E2 ubiquitin-conjugating enzyme family with a strict specificity
for the substrates SUMO-1 and hSMT3b (54). Hereby, hUBC9
mediates the formation of an isopeptide bond between the carboxy
terminus of the respective UbH and the amino group of a lysine residue
in the target protein (42). However, in contrast to
ubiquitinylation, there is currently no evidence that the proteins
modified by SUMO-1 or hSMT3b are targeted for destruction via the
proteasome (70).
Having identified UbH polypeptides and hUBC9 as specific interaction
partners of IE2, we wondered whether IE2-p86 could be modified by
covalent linkage to SUMO-1 or hSMT3b. By Western blot experiments using
lysates derived from transfected 293 cells, we were able to demonstrate
a modification of IE2-p86 after coexpression with a FLAG-tagged SUMO-1
or hSMT3b resulting in a 105-kDa IE2 isoform, which could be detected
using two different IE2-specific antibodies. To reliably detect this
isoform, it turned out to be critical to lyse cells under strictly
denaturing conditions, since SUMO-1 or hSMT3b conjugates are highly
unstable in NP-40 lysis buffer most probably due to a deSUMOylation
activity in cell lysates (13). Under denaturing lysis
conditions, a 105-kDa IE2 isoform could even be detected after
expression of IE2-p86 in the absence of a FLAG-tagged SUMO-1, most
probably due to a modification by an endogenous UbH moiety.
Furthermore, we were able to immunoprecipitate the conjugated 105-kDa
IE2 isoform from lysates of transfected 293 cells under denaturing
conditions, thus further confirming the covalent nature of the
interaction. Interestingly, two additional FLAG-reactive bands of 130 and 150 kDa could reproducibly be observed after immunoprecipitation
with IE2-specific antibodies. Since these signals were detectable only
in reactions containing both IE2-p86 and the respective FLAG-UbH
polypeptide, it is highly unlikely that they are the result of
nonspecific binding of FLAG-tagged proteins to primary antibodies or to
the Sepharose beads. Surprisingly, these bands were not detected in
Western blot analyses using various IE2-specific antibodies, suggesting
that they do not represent additional IE2 isoforms. A similar
observation of a higher-molecular-weight protein species has also been
described for I
B
/SUMO-1 conjugates (13). Whether these
signals are due to cellular UbH-conjugated proteins that strongly
interact with IE2-p86 is not known.
After having demonstrated that IE2-p86 can be covalently modified by
SUMO-1 or hSMT3b after transient expression of each protein, we wanted
to know whether this conjugation could also occur in HCMV-infected
human fibroblasts. By Western blot analysis, we were able to show that
a 105-kDa IE2 isoform is detectable during the whole time course of the
HCMV replicative cycle, with the most prominent signal occurring at
late times after infection. Moreover, we could immunoprecipitate the
105-kDa IE2 isoform after HCMV infection of fibroblasts that had been
transfected with expression vectors for either the FLAG-tagged SUMO-1
or hSMT3b, demonstrating the stability of these isoforms under
conditions of viral infection.
In summary, these experiments show that IE2-p86 can be covalently
coupled to SUMO-1 or hSMT3b both after cotransfection and during viral
infection. At present, we are not able to definitely demonstrate
whether the endogenous moiety that is coupled to IE2-p86 corresponds to
SUMO-1 or hSMT3b. This is due to several reasons. First, since no
specific antibody against hSMT3b is available as yet, it is impossible
to detect the endogenous protein. Second, the only available antibody
against SUMO-1, MAb 21C7 (45), does not react with
SUMO-1-conjugated IE2 even in experiments where IE2-p86 was
cotransfected with FLAG-tagged SUMO-1, which allowed for a reliable
monitoring of the conjugation by using an anti-FLAG MAb (data not
shown). This may be due to the fact that this antibody has been
generated against RanGAP1-conjugated SUMO-1 and may require an epitope
shared by SUMO-1 and RanGAP1 for high-affinity binding, thus making the
detection of other SUMO-1-conjugated proteins difficult. Alternatively,
the epitope recognized by MAb 21C7 may not be accessible in the
IE2-p86-SUMO-1 conjugate. Therefore, the final evidence for the nature
of the endogenous UbH moiety conjugated to IE2-p86 awaits the
availability of novel reagents allowing the detection of distinct
species of UbH polypeptides.
IE2-p86 is not the only protein encoded by HCMV that can be modified by
covalent coupling to SUMO-1 or hSMT3b. Consistent with a recent
publication by Müller and Dejean (48), we observed a
higher-molecular-weight species of the IE1-p72 transactivator after
cotransfection of a vector encoding FLAG-tagged SUMO-1. This does not
reflect a general, nonspecific modification after overexpression of UbH
molecules since several other viral proteins (e.g., pUL84, pUL69, and
pUL26) were not coupled under those conditions. However, we noticed
differences in the modification of IE1-p72 in comparison to IE2-p86.
First, no endogenously modified protein species could be detected for
IE1-p72 after transfection of an IE1 expression vector alone. Second,
we were not able to immunoprecipitate an IE1-p72/SUMO-1 conjugate after
HCMV infection of cells that had been transfected with a vector for
FLAG-tagged SUMO-1/hSMT3b. At present, we do not know whether these
differences are due to a higher instability of the respective IE1
conjugate or reflect a differential regulation of SUMOylation during
the HCMV replicative cycle.
To identify the lysine residue within IE2-p86 which serves as an
acceptor for covalent coupling by UbH moieties, we used a panel of N-
and C-terminal IE2 deletion mutants. Hereby, we were able to localize a
domain within IE2-p86 that shares a high similarity to already
published SUMOylation sites of other cellular proteins (13, 33,
42, 62). By PCR mutagenesis we could show that this domain
contains two SUMOylation motifs involving amino acids 175 and 180; only
a double mutation of both lysine residues abolished modification by
SUMO-1 or hSMT3b. The loss of the endogenous 105 kDa IE2-isoform after
mutation of both lysine residues can serve as an additional strong
argument that a UbH-like protein is responsible for this modification.
As we observed that mutation of either conjugation site alone still
results in a 105-kDa IE2 isoform, we believe that both lysine residues
can serve as acceptors for modification. However, we never detected a
130-kDa isoform in Western blot analysis which would be consistent with
a simultaneous linkage of two UbH moieties to IE2-p86. Therefore, we
favor the hypothesis that these sites are used alternatively, probably
because of steric hindrance: once a modification has taken place, the second site would no longer be accessible for coupling. However, it
remains to be determined why IE2-p86 possesses these two motifs in an
immediate vicinity.
Finally, we were interested in the function of IE2 SUMOylation. For
RanGAP1, a protein involved in nuclear transport, it was shown that
only the SUMO-1-modified isoform p90 is localized at the nuclear pore
complex whereas the nonmodified form p70 has a cytoplasmic distribution
(41, 45). As HCMV IE2-p86 is strictly nuclear and as the
conjugation sites are not contained within the nuclear localization
signals of IE2 (73), a targeting to the nuclear pore complex
as a consequence of modification is probably not the function of IE2
SUMOylation. For the inhibitor of NF
B, I
B
, it was shown that
covalent attachment of SUMO-1 protected against signal-induced
degradation (13). However, since protein steady-state levels
of the SUMOylation-defective IE2 double mutant did not differ
significantly from those of the single amino acid mutants or the
wild-type protein, a major influence of SUMOylation on the half-life of
IE2 appears to be unlikely. Recently, two proteins of ND10 (also termed
PML oncogenic domain or Kr bodies), PML and Sp100, have turned out to
be SUMO-1 conjugated (33, 49, 63). For PML, the first
identified ND10-associated protein, it was observed that SUMOylation is
necessary for its accumulation within these domains (49). In
contrast, the Sp100 protein is present in ND10 even when SUMOylation is
abolished, indicating that covalent coupling with SUMO-1 does not
necessarily refer to a localization within nuclear bodies
(62). Having generated an IE2 mutant which is no longer
conjugated, we showed that SUMOylation of IE2-p86 is not required for
its accumulation within ND10. This suggests that SUMOylation is not a
common pathway for protein targeting to ND10 domains.
Apart from the known cellular target proteins for SUMOylation as
mentioned above, several publications have described an interaction of
the hUBC9 enzyme with various bait proteins in yeast two-hybrid screens
(27, 28, 66, 72). Since the only function of hUBC9 known so
far is the attachment of UbH moieties to target factors, one might
speculate that at least some of those bait proteins are likewise
SUMOylated. Interestingly, several of those bait proteins, e.g., Ets-1
(27), WT-1 (66), and viral regulatory proteins
like the adenovirus E1a protein (28), exhibit
transcriptional activity. For some of these factors it was reported
that cotransfection of a hUBC9 expression vector resulted in increased
transactivation of a given reporter construct (27). This
implicates a potential role of modification by UbH polypeptides for
transcriptional regulation and raised the hypothesis that SUMOylation
might be of a more general importance for transcription factors.
Consistent with this, two recent publications demonstrated that a
modification of p53 by SUMO-1 resulted in enhanced transactivation by
p53 (22, 53). Therefore, we investigated whether the IE2
mutants described above showed differences in transactivation potential
from wild-type IE2-p86. Hereby, we observed a drastic reduction of
transactivation mediated by the double amino acid mutant which is
negative for SUMOylation, whereas the single amino acid mutants that
are still coupled to UbH proteins were not defective. This suggests
that SUMOylation is of importance for IE2-mediated transactivation. At
present, we cannot totally exclude that the simultaneous mutation of
two lysine residues within this region results in an alteration of IE2
protein conformation leading to a reduction in transactivation levels,
although each of the single amino acid mutants was fully functional.
However, we performed several different approaches to confirm the
integrity of the double mutant protein structure. First, we substituted
each lysine residue against another basic amino acid, arginine, in
order to maintain the basic charge within the mutated sequence in
IE2-p86. Second, we demonstrated that all IE2 mutants could still
interact with the viral pUL84 protein, as confirmed by
coimmunoprecipitation analysis. Previous experiments in our laboratory
suggested that an extended domain within IE2-p86 is required for
binding to pUL84 (T. Stamminger, unpublished observation), indicating
that the structure of the individual mutants still allows for an
interaction. Third, the individual mutants are still able to dimerize,
as shown by coimmunoprecipitation experiments. Last, we were able to
confirm the interaction between the individual mutants and the hUBC9
enzyme in yeast (H. Hofmann and T. Stamminger, unpublished data). This
is of particular importance since it proves that mutation of lysine
residues which abolishes SUMOylation does not interfere with hUBC9
interaction, which in turn would prevent modification.
Extensive investigations by other laboratories have characterized
domains within IE2-p86 that are necessary for transactivation. Hereby,
it was shown that both an amino-terminal domain comprising amino acids
1 to 98 as well as the carboxy-terminal half of the IE2-p86 protein are
required for stimulation of early HCMV promoters (43, 50, 56,
60). Additionally, Yeung et al. reported that amino acids 169 to
194 are necessary for IE2-p86 mediated transactivation of the HIV LTR
(73). Consistent with this, our data show that amino acids
175 and 180 are important for stimulation of the early HCMV promoters
of the UL112/113 and UL84 gene regions as well as for stimulation of
the HIV LTR. The UL112/113 promoter had also been the subject of
studies by Sommer et al. who showed that an internal deletion of amino
acids 135 to 290 within IE2-p86 (in deletion mutant IE86
SX) resulted
in an approximately 50% reduction in the transactivation potential
compared to wild-type IE2-p86 (56). Luciferase experiments
using a reporter construct under control of the UL112/113 promoter in
combination with either the IE86
SX mutant or the internal deletion
mutant IE2del174-181 showed a transactivation potential similar to that
observed with the SUMOylation negative-double mutant IE2mut175+180.
Our current model concerning the function of IE2 SUMOylation includes
the UbH residue as an additional protein interaction motif for other
cellular cofactors, which in turn might also be modified by UbHs
(7). To back up this hypothesis, it would be necessary to
identify cellular cofactors which preferentially interact with
wild-type IE2 but not with the double amino acid mutant. To determine
the importance of IE2 SUMOylation for the lytic replicative cycle of
HCMV, the construction of a recombinant virus carrying the double amino
acid mutation in the IE2 open reading frame is in progress.
 |
ACKNOWLEDGMENTS |
We thank Michael Winkler for assistance with the yeast two-hybrid
system and Donatella de Gaspero-Hoops and Regina Kupfer for excellent
technical assistance. We also thank D. Spector (San Diego, Calif.) and
T. Sternsdorf (Hamburg, Germany) for reagents, H. Fickenscher for
critical reading of the manuscript, F. Melchior for helpful
discussions, and B. Fleckenstein for continuous support.
This work was supported by the Deutsche Forschungsgemeinschaft (grants
Sta 357/3-1 and SFB 473) and the Bundesministerium für Forschung
und Technologie (IZKF Erlangen).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Institut
für Klinische und Molekulare Virologie, Universität
Erlangen-Nürnberg, Schlossgarten 4, 91054 Erlangen, Germany.
Phone: 9131/8526783. Fax: 9131/8522101. E-mail:
tsstammi{at}viro.med.uni-erlangen.de.
 |
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