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Journal of Virology, March 2000, p. 2193-2202, Vol. 74, No. 5
Department of Gastroenterology and
Hepatology, Medizinische Hochschule Hannover, D-30625 Hannover,
Germany
Received 6 August 1999/Accepted 29 November 1999
Chronic hepatitis B virus (HBV) infection can lead to liver
cirrhosis and hepatocellular carcinoma. Long-term interaction of the
immune system with the virus results in the selection of escape mutants
and viral persistence. In this work we characterize mutations in the
enhancer I region isolated prior to liver transplantation from the HBV
genomes of 10 patients with chronic HBV infection. The HBV-genomes were
sequenced, and the enhancer I region was cloned into luciferase
reporter constructs to determine the transcriptional activity.
Functional studies were performed by transfecting HBV replication-competent plasmids into hepatoma cells. Analyses of the
replication fitness of the mutant strains were conducted by biochemical
analysis. In all HBV genomes the enhancer I region was mutated. Most of
these mutations resulted in decreased transcriptional activity. The
strongest effects were detectable in strains with mutations in the
hepatocyte nuclear factor 3 and 4 (HNF3 and HNF4) binding sites of the
enhancer I core domain. Replication-competent HBV constructs containing
these mutations demonstrated up to 10-fold-reduced levels of virus
replication. Before liver transplantation, when the mutant strains were
detected in the patients' sera, low HBV DNA levels were found. After
transplantation and reinfection with a wild-type virus, the levels of
replication were up to 240-fold higher. Our results show that mutations
in the enhancer I region of HBV have a major impact on HBV replication.
These mutations may also determine the switch from high to low levels
of viral replication which is frequently observed during chronic HBV infection.
Human infection with the hepatitis B
virus (HBV) will lead either to an acute, self-limiting disease, to
fulminant hepatic failure, or to chronic HBV infection. Despite the
fact that only 3 to 10% of all individuals who acquire HBV will become
chronic carriers, more than 400 million people worldwide are
chronically infected with the virus (2). The risk of
developing liver cirrhosis or hepatocellular carcinoma for these
persons is 100 to 200 times higher than the risk for the rest of the
population (16, 44).
After infection with HBV, a specific T- and B-cell response against
viral proteins leads to clearance of the virus from the organism and
development of lifelong immunity. However, in the chronic carrier
state, the immune system fails to eliminate the virus, leading to a
persistent infection with HBV (13, 32). There is growing
evidence that escape from elimination by the immune system may be
caused by the selection of mutant viruses during the course of HBV
infection (7). The high frequency of mutations found in the
HBV genome compared to those of other DNA viruses is caused by the
inaccuracy of the viral polymerase, which lacks proofreading activity
(30, 31, 35).
An example of the selection of a mutant virus has been provided by the
replication of HBV in a newborn whose mother was chronically infected.
Even though the baby received passive immunization immediately after
birth to prevent HBV infection, HBV replication still occurred. Sequence analysis of the HBV S gene revealed a mutation in the "a"
determinant, which disrupts antibody binding and thus prevents elimination of the virus by the immune system (8-10).
In addition to mutations which affect the immunogenicity of the virus,
changes which influence its replication competence may be of similar
importance. During chronic HBV infection, two different stages can be
differentiated. The time immediately after the first contact with the
virus is characterized by high levels of HBV DNA and a strong
inflammatory response in the liver (44). At a later stage,
there is a strong decrease in the level of replication, which is
frequently associated with seroconversion from hepatitis B virus e
antigen (HBeAg) to anti-HBe (28).
The amount of viral gene products, including the pregenomic RNA, is
controlled at the level of transcription. Four promoter and two
enhancer elements have been characterized in the HBV genome. In these
control regions, DNA binding motifs for liver-specific transcription
factors have been identified which regulate transcription in a
tissue-specific manner and thus directly contribute to the hepatotropism of HBV (1, 18, 23, 30, 34). Transcription of
the pregenomic RNA is controlled through the core promoter and the
enhancer I region. Besides the pregenomic RNA, the enhancer I region
regulates transcription of the core and X genes (1, 19, 21, 26,
46). The activity of enhancer I is regulated by the complex
interaction of hepatocyte-specific and ubiquitous transcription factors
which can bind in this region (Fig. 1A) (24, 33, 45). The enhancer I region has been described as consisting of three domains (Fig. 1A). The modulator element contains ubiquitous and liver-specific transcription factor binding sites and
spans the 5' end of the enhancer I region. A central region, called the
enhancer core domain, is responsible for the strong influence of the
enhancer I region on the different promoters in the HBV genome, and the
3' end overlaps with the X promoter (11, 15, 18, 20, 22, 24, 30,
41). At least four nuclear proteins have been identified which
are able to bind to the core domain (3, 18, 22, 30). The
external motifs 5' and 3' of the inner core domain bind nuclear factor
1 and rheumatoid factor 1, respectively. However, the tissue-specific
regulation of enhancer I is mediated by two motifs located in the
central core domain which bind proteins from the nuclear receptor
family. One motif binds hepatocyte nuclear factor 4 (HNF4) (18,
22); the other motif represents a binding site for HNF3, a
transcription factor that is expressed in several isoforms in the liver
(24, 30).
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
The Enhancer I Core Region Contributes to the
Replication Level of Hepatitis B Virus In Vivo and In Vitro
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References

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FIG. 1.
Enhancer I mutants derived from 10 patients chronically
infected with the hepatitis B virus. (A) DNA binding sites in the HBV
enhancer I-X promoter between nt 2364 and 2768 of the HBV genome (pre-C
ATG = 1) are depicted. The binding motifs of the liver-specific
transcription factors HNF3 and HNF4 are marked in boldface letters.
Binding sites for other ubiquitous or liver-specific factors are also
shown. (B) Sequence analysis of patient-derived enhancer I regions
showing deletions and mutations in comparison to the wt HBV enhancer I
region. Between nt 2526 and 2558, the enhancer I sequences are
highlighted (boldface italics) to show the mutations found in patients
1 and 3.
In this study we tested whether enhancer I mutations have an impact on viral replication. The mutations were derived from patients suffering from chronic HBV infection prior to undergoing liver transplantation for end-stage liver cirrhosis. In addition, we examined the impact of these mutations on the control of viral replication during the early and late stages of HBV infection. Collectively, our results demonstrate that the patient-derived mutations in the binding sites for HNF3 and HNF4 which downregulate enhancer I activity contribute to decreased replication fitness of these mutant viruses. Lower virus replication may result in an advantage for the chronic persistence of HBV.
(Part of this work was contained in the M.D. thesis of Katharinna Köhler.)
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MATERIALS AND METHODS |
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Patients. The 10 patients included in this study were transplanted for HBV-related end-stage liver disease between September 1985 and July 1992. The patients experienced HBV reinfection, which was defined as the reappearance of hepatitis B virus S antigen (HBsAg). Routinely, 20,000 IU of anti-HBs (hepatitis B virus immune globulin [HBIg]) was administered in the anhepatic phase, and 10,000 IU of HBIg was administered each day for up to 1 week after surgery (7). At later time points, anti-HBs titers were tested, and HBIg was given when the titers fell below 100 IU/liter. Nine out of 10 patients had the subtype adw2, and 1 patient had subtype ayw.
Serological assays.
Serum samples were aliquoted and stored
at
20°C until they were defrosted for testing. HBsAg, anti-HBs,
HBeAg, and anti-HBe were tested by commercial enzyme immunoassays
(EIAs) (Abbott Laboratories, Chicago, Ill.).
Extraction of DNA from sera and amplification of the HBV genome. DNA was extracted from sera (39) collected before orthotopic liver transplantation (OLT) and at time points after HBV reinfection was evident. Ninety microliters of serum was treated with 10 µl of proteinase K and 300 µl of DNA lysis buffer (0.67% sodium dodecyl sulfate (SDS), 13.33 mM Tris-HCl [pH 8.0], 6.6 mM EDTA [pH 8.0], and 13.3 mg of tRNA/ml). The mixture was incubated at 56°C for 2 h. Four hundred microliters of phenol-chloroform-isoamyl alcohol (25:24:1 [vol/vol]) was added and vortexed. The mixture was centrifuged for 30 min at 13,000 × g and 4°C. The DNA in 300 µl of the upper phase was precipitated by adding 660 µl of 100% ethanol and 30 µl of 3 M sodium acetate (pH 5.2) and centrifuged for 30 min at 13,000 × g and 4°C. After the pellet was briefly washed with 70% ethanol, it was dried and resuspended in 25 µl of TE buffer (10 mM Tris-HCl, 1 mM EDTA, pH 8.0).
The enhancer I-X promoter region was amplified using the following primers: SF-sense, 5'-AAG CTT GGG TAT ACA TTT AAA CCC T-3', and SF-antisense, 5'-GAA TTC AGA GTC CTC TTA TGC AAG AC-3' (spanning the HBV nucleotides [nt] 2229 to 3075). Additionally, the region between nt 3021 and 162 of the HBV genome was amplified by two independent PCRs using the following primers: LF-sense, 5'-GAA TTC GGA AAG AAG TCA GAA GGC AA-3', and LF-antisense, 5'-AAG CTT AGA CCA CCG TGA ACG CCC A-3'. In these fragments, the pre-C region, the C promoter, the enhancer II region, and part of the coding region of the X gene are located. Amplification of fragments was performed as described before (40). For each sample, a negative control was treated in parallel starting at the extraction step to lower the probability of cross contamination. Additionally, a positive control was added. In cases where cross contamination was detected, all samples were discarded. Subcloning and sequencing of PCR products was performed by using the TA cloning kit (Invitrogen, San Diego, Calif.) as described previously (39) and according to the manufacturer's instructions. After EcoRI digestion the sizes of the inserts were determined by agarose gel electrophoresis. Four clones were sequenced in an equimolar mix, and in case of double bands, single sequencing of the clones was performed. Sequencing was done by using an automated sequencer (ALFExpress; Pharmacia) or the Sequenase sequencing kit (United States Biochemicals). SF, LF, or universal primers (Pharmacia) were used for sequencing.Plasmid construction. To determine the transcriptional activity of the different enhancer I and enhancer I-X promoter mutants in luciferase assays, the PCR fragments from the serum-derived HBV DNAs of the 10 patients were introduced into the restriction sites KpnI and BglII of the multiple cloning sites of the pGL2 luciferase basic (without any promoter) or promoter reporter (simian virus 40 [SV40] promoter; Stratagene) vector using the following primers: Enh1-sense, 5'-GGG GTA CCC TTC CTG TTA ACA GGC CTA T-3' (starting at nt 2364), and Enh1-antisense, 5'-GAA GAT CTG CTC CAG ACC GGC TGC GAG C-3' (terminating at nt 2725). For the enhancer I-X promoter constructs, the following primers were used: Enh1-sense (described above) and Enh1-long: 5'-GAA GAT CTT TTC CGC GAG AGG ACG ACA GA-3' (terminating at nt 2768). These primers had 5' extensions with either the KpnI or the BglII restriction enzyme site (underlined sequences) spanning the HBV region from nt 2364 to 2725 or from nt 2364 to 2768, respectively. The enhancer I PCR fragments (nt 2364 to 2725) in all the plasmids were sequenced and checked for the presence of mutations compared to wild-type (wt) HBV (Fig. 1B).
The plasmid pHBV1.2 (subtype adw2) was generated by inserting an NcoI/BspEI HBV fragment from nt 2781 to 518 as a 1.28-mer overlength (4,178 bp) HBV DNA into the EcoRV restriction enzyme site of the multiple cloning site of the pBluescript KS(
) plasmid. The resulting plasmid, pHBV1.2, was checked for HBV
replication competence and was used as wt HBV DNA.
To analyze the enhancer I mutations for replication competence, the
mutated enhancer I HNF3 and HNF4 sequences were cloned using a two-step
procedure with an intermediate cloning vector (HBV 3.2-kb
SacII monomer silver vector) to replace the wt sequences with sequences of the enhancer I mutants. PCR fragments were generated from the serum-derived HBV DNA of patients 1 and 3 using the following primers: Enh-repli-sense, 5'-CTTCCTGTTAACAGGCCTATT-3'
(starting at nt 2364 and including the restriction enzyme
HpaI site), and Enh-repli-antisense, 5'-AGC AGC CAT GGA AAC
GAT GTA TAT TTC CGC GAG AGG ACG ACA GAA-3' (terminating at nt 2791 and
including the restriction enzyme NcoI site). The PCR
fragments were digested with HpaI and NcoI. The
resulting fragments were introduced into the HpaI and
NcoI sites of the silver vector. After amplification of the
newly generated vectors, the SacII fragment of the mutant silver vectors replaced the corresponding sequences in the pHBV1.2 plasmid. Each resulting plasmid was digested with several restriction endonucleases and subsequently sequenced to verify the presence of the
mutations originally found in patients 1 and 3 (Fig. 1B).
For in vitro translation of HNF3 or HNF4 transcription factors,
HNF3
, -
, and -
, and HNF4 cDNAs, inserted in the
EcoRI site of pBluescript KS(+) vector (kindly provided by
J. Darnell, Rockefeller University, New York, N.Y.), were used. For
protein expression, HNF3 or HNF4 cDNA was excised from the pBluescript
vectors by the restriction enzyme EcoRI and transferred into
the EcoRI site of the multiple cloning site of pcDNA3
expression vectors (Invitrogen).
Cell culture, transfection experiments, and luciferase
assays.
HuH-7 cells (human hepatoma cells [27]),
which are negative for HBV markers, were cultured in Dulbecco's
modified Eagle's medium supplemented with 10% fetal bovine serum
under 5% CO2 at 37°C. DNA transfection by the calcium
phosphate coprecipitation method was performed as described previously
(6). For analysis, the cells were harvested between 24 h and 6 days after transfection. Transfection efficiency was routinely
checked by cotransfecting 0.2 µg of the
-galactosidase pCMV
Gal
vector as an internal standard (29). To verify the results,
all transfection experiments were routinely performed in triplicate at
a minimum.
-galactosidase pCMV
Gal
vector as an internal standard. The concentration was kept constant by
adding the empty cytomegalovirus expression vector. Forty-eight hours
after transfection, the HuH-7 cells were harvested, lysed, and measured
exactly as described previously (29).
To monitor HBV replication in HuH-7 cells, 4.8 µg of the HBV
replication-competent vector was transfected. The amount of total DNA
was kept at 5 µg, containing 0.2 µg of the
-galactosidase pCMV
Gal vector as an internal standard.
Intracellular HBeAg and HBsAg expression. Intracellular HBeAg or HBsAg was evaluated by using whole-cell extracts from lysed transfected cells in buffer (120 mM NaCl, 1 mM EDTA, 10 mM Tris-HCl [pH 8.0], 0.1 mM Pefablock [Boehringer, Mannheim, Germany], 0.1 mM dithiothreitol, 1% Triton X-100). Extracellular HBeAg or HBsAg was collected from the transfected-cell-medium supernatant. Two hundred-microgram aliquots were analyzed by commercial EIAs (Abbott Laboratories).
Preparation of nuclear extracts and in vitro-translated protein. HuH-7 nuclear extracts were prepared according to the method of Dignam et al. 1983 as described before (14).
For in vitro translation of HNF3 and HNF4, cDNA plasmids were used as described above. In vitro translations of HNF3
, -
, and -
, and
HNF4 proteins were performed as described previously (29)
using reticulocyte lysate extracts (Pharmacia) according to the
manufacturer's instructions. In vitro-transcribed HNF3 or HNF4 mRNA
was used as a template. Newly synthesized proteins were analyzed by
SDS-PAGE. Purified proteins were used in gel retardation assays.
Gel retardation assays. For gel retardation assays, nuclear extracts from HuH-7 cells or in vitro-translated protein was used. Three micrograms of nuclear extracts was used unless otherwise indicated. For binding assays, an oligonucleotide spanning the region of interest was used as a 32P-labeled probe. Approximately 50 fmol, corresponding to 30,000 to 50,000 cpm, was used per binding reaction. The binding reaction was performed for 20 min on ice. Free DNA and DNA-protein complexes were resolved on a 6% polyacrylamide gel as described previously (37). The gels were dried and exposed for autoradiography.
For super-shift experiments, an anti-HNF4 antibody (kindly provided by J. Darnell) was incubated in the binding reaction. The oligonucleotides used as 32P-labeled probes or as unlabeled oligonucleotides in the competition assays were as follows: The enhancer I HNF3 motif (spanning nt 2528 to 2546) included wt HNF3 sense, 5'-TCT AAG TAA ACA GTA CAT G-3'; wt HNF3 antisense, 5'-CAT GTA CTG TTT ACT TAG A-3';
HNF3 sense, 5'-TCT GTG CAA ACA GTA CAT G-3';
and
HNF3 antisense, 5'-CAT GTA CTG TTT GCA CAG A-3'. The enhancer I
HNF4 motif (spanning nt 2540 to 2576) included wt HNF4 sense, 5'-GTA
CAT GAA CCT TTA CCC CGT TGC TCG GCA ACG GCC T-3'; wt HNF4 antisense,
5'-AGG CCG TTG CCG AGC AAC GGG GTA AAG GTT CAT GTA C-3';
HNF4 sense,
5'-GTA CAT AAA CCT TTA CCC CGT TGC TCG GCA ACG GCC T-3'; and
HNF4
antisense, 5'-AGG CCG TTG CCG AGC AAC GGG GTA AAG GTT TAT GTA C-3'.
Northern blot analysis.
Northern blot analysis was performed
as described before, according to standard procedures (38).
In brief, total RNA was extracted from cells with the RNeasy kit
(Qiagen Inc., Hilden, Germany) 2 to 3 days after transfection following
the manufacturer's instructions. RNA samples were kept at
80°C
until they were used. Twenty micrograms of total RNA was analyzed
through a 1% MOPS [3-(N-morpholino)propanesulfonic acid]
gel (20 mM MOPS, 5 mM sodium acetate, 1 mM EDTA; pH 6.8), followed by
transfer to Hybond N+ nylon membrane (Amersham, Little
Chalfont, England). For hybridization, a 32P-labeled
monomeric HBV DNA probe was used. Equal loading of RNA samples was
verified by reprobing the membrane with a 32P-labeled GAPDH
(glyceraldehyde-3-phosphate dehydrogenase) probe.
Progeny HBV DNA. Progeny HBV DNA was isolated from transfected cells as described previously (25). HBV capsids were immunoprecipitated from cell lysates by polyclonal rabbit anti-HBcAg antiserum (DAKO, Hamburg, Germany) as described previously. Residual transfected plasmid HBV DNA was eliminated by Staphylococcus aureus nuclease treatment (100 U per 106 cells; Boehringer). Viral progeny DNA was extracted from the capsids by using 500 µg of proteinase K (Sigma, Heidelberg, Germany)/ml-1% SDS at 56°C for 2 h. The DNA was purified by phenol extraction following separation on a 1% alkaline agarose gel (4). Southern blotting was performed on Hybond N+ nylon membranes.
SDS-PAGE and Western blot analysis. SDS-PAGE and Western blot analyses were performed with whole-cell nuclear extracts derived from HuH-7 cells transfected with the wt or mutant HBV replication-competent vector. Specific signals were detected by using polyclonal rabbit anti-core antiserum (DAKO) as described previously (5).
Quantification. Quantification of results was performed with a Fuji imager using the Tina-PCBAS software (Raytest, Straubenhardt, Germany) or by a densitometric evaluation as described before (6).
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RESULTS |
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Distinct mutations in the enhancer I region derived from chronic HBV carriers decrease its activity. The region of the HBV genome containing most of the crucial regulatory elements for viral replication, the enhancer I and II regions, and the core promoter (nt 2229 to 162) was amplified by PCR and sequenced from sera of 10 patients with chronic HBV infection prior to OLT. Major mutational changes were found in the enhancer I region. Therefore, this region was subcloned and further analyzed to investigate its impact on HBV replication. As shown in Fig. 1B, all of the patients had mutated enhancer I sequences. In four patients (1, 2, 3, and 7), the mutations were localized in the so-called enhancer I core domain.
In the HBV genome, the enhancer I region partially overlaps the X promoter, thereby influencing the activity of the promoter. In addition, enhancer I controls the activity of the core promoter, which is located further upstream. In order to investigate both functions separately, we cloned the two regions
the enhancer I and the enhancer
I-X-promoter
in front of luciferase reporter gene constructs. To test
the enhancer I element (nt 2364 to 2716 [pre-C ATG = 1])
independently of the X promoter, it was cloned into the enhancer
plasmid, in which luciferase expression is controlled by the
heterologous SV40 promoter (Fig. 2A). In
the enhancer I-X promoter constructs, the entire region (nt 2364 to
2768) was cloned in front of the luciferase gene of the basic reporter
plasmid (pGL2; Stratagene) (Fig. 2C). To determine the impacts of the different mutations found in the enhancer I region on the
transcriptional activities of these constructs, we transfected them
into the hepatoma-derived cell line HuH-7 and measured luciferase
activity. All experiments were performed a minimum of three times to
verify the results.
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Mutations in the enhancer I core domain result in lack of
activation through decreased binding of liver-specific transcription
factors.
The enhancer I sequences isolated from patient 1 and
patient 3 showed the most prominent reduction in enhancer I activity compared to that of wt HBV. We therefore decided to characterize these
two HBV variants in more detail. The mutation derived from patient 1 contained a 2-nt deletion between nt 2531 and 2532 and a 2-nt insertion
between nt 2535 and 2536 in the enhancer I HNF3 element (
HNF3; AAGTA
was changed to GTGCA in the HNF3 motif). The mutation derived from
patient 3 consisted of a single point mutation at nucleotide 2546 in
the enhancer I HNF4 motif (
HNF4). Other enhancer I mutations found
in the HBV variants of patients 1 and 3 are not located at a known
protein-binding site of the enhancer I region (Fig. 1B). Analysis of
the other mutants shown in Fig. 1B showed they were not located in
known DNA binding sites controlling enhancer I activity.
HNF3), oligonucleotide was incubated with HuH-7 cell
nuclear extracts. The intensity of this band diminished when the
nuclear extracts were preincubated with unlabeled wt HNF3
oligonucleotide but remained unchanged when the mutant sequence
(
HNF3) was used (data not shown). Three different isoforms of HNF3
(
,
, and
) expressed in the liver are known to bind to the wt
HNF3 binding site. In order to detect differences in their abilities to
bind the wt or the mutant HNF3 sequence, we used in vitro-translated
proteins of these three isoforms in gel shift experiments. Complex
formation was clearly detected when each of the HNF3 proteins was
incubated with wt, but not mutant HNF3 (
HNF3), oligonucleotides
(Fig. 3A; right). These experiments suggest that a 2-nt deletion (nt
2531 to 2532) and a 2-nt insertion between nt 2535 and 2536 in the HBV
enhancer I region abolishes binding of all isoforms of HNF3 to this
sequence.
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HNF4). Formation of a specific DNA-protein complex
was clearly detectable when in vitro-translated HNF4 protein was
incubated with the wt enhancer I element. Furthermore, antibodies
directed against HNF4 supershifted this complex, thereby confirming its
specificity (Fig. 3B). Unexpectedly, when the mutant HNF4 (
HNF4)
oligonucleotide was incubated with in vitro-translated HNF4 protein, a
dramatic reduction in complex formation was evident (Fig. 3B, left,
lane 3). Using nuclear extracts from HuH-7 cells, we were able to
confirm the strong differences between complex formation of HNF4 with
the wt and with the mutated HNF4 binding sites (data not shown).
Additional competition experiments with either an unlabeled wt or
mutant HNF4 oligonucleotide showed that the wt element was able to
compete against complex formation in low molar excess. However, mutant
HNF4 competition is only found with high molar concentrations of
unlabeled oligonucleotides (Fig. 3B, right).
In order to determine whether overexpression of HNF3 or HNF4 would
result in a significant increase in luciferase activity of the
HNF3
and
HNF4 reporter constructs, we cotransfected them with expression
plasmids of both transcription factors. While the wt enhancer I
construct could be stimulated by cotransfecting the expression vector
for HNF3, neither of the two mutant constructs (
HNF3 or
HNF4)
could be stimulated by cotransfecting the expression vector for HNF3 or
HNF4, respectively (Fig. 3C). Additionally, endogenous wt HNF4
expression in the hepatoma cell lines used seemed to be sufficient to
maximally increase wt HNF4 construct activity. Thus, only a minor
increase in luciferase activity could be detected if exogenous wt HNF4
was cotransfected.
The
HNF3 and
HNF4 mutants result in decreased replication
efficiency of HBV.
From our initial experiments, we conclude that
the described mutations in the enhancer I core domain result in
decreased binding of HNF3 and -4 to this regulatory element. The
functional unresponsiveness of the enhancer I core domain is
responsible for the significantly reduced transcription of the
different luciferase constructs tested. In order to determine the
impacts of these mutations on HBV replication, we generated
replication-competent HBV constructs containing the mutated enhancer I
regions of patients 1 and 3 (
HNF3 and
HNF4) (Fig. 1B).
HNF3 and the
HNF4 mutations resulted in decreased X and pregenomic RNA levels compared to the corresponding wt
levels (Fig. 4A, right). Pregenomic RNA levels were reduced to
approximately 20 (
HNF3) or 40% (
HNF4) those of the wt construct. The reduction of X mRNA levels was even stronger (25% for
HNF3 and
18% for
HNF4). A less pronounced effect was evident for the pre-S
and S mRNAs (70% for
HNF3 and 60% for
HNF4) (Fig. 4A). These
results demonstrate that both mutations strongly reduce HBV-specific
RNA levels.
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HNF3 and
HNF4 HBV mutations reduced the levels of viral
pregenomic and C RNAs, we subsequently quantitated the expression of
the viral gene products. The levels of HBsAg and HBeAg expression were
quantitated intracellularly and extracellularly in whole-cell extracts
and supernatants of transfected HuH-7 cells 5 days after transfection
(Fig. 4B). These experiments showed that both mutations resulted in a
reduction to less than 40% of intracellular and extracellular HBeAg
expression compared to that of wt HBV. The decrease in HBsAg was less
pronounced, and at least 80% of the wt HBV level was found with both
mutant strains (Fig. 4B).
After transfection of HuH-7 cells with wt HBV or the
HNF3 or
HNF4
replication construct, core protein levels were determined using
whole-cell extracts (Fig. 5A). When the
HNF3 or
HNF4 replication construct was transfected, only 30 or
15%, respectively, of the amount of core protein expressed by wt HBV
was detected by Western blot analysis (Fig. 5B).
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HNF4 and 8% for the
HNF3
mutant (Fig. 5D).
The occurrence of the
HNF4 and
HNF3 enhancer I mutants
correlates with reduced HBV replication.
The
HNF4 and
HNF3
enhancer I core domain mutants were isolated from sera derived
immediately before liver transplantation (OLT). Here, we studied HBV
replication in both patients at time points before and after liver
transplantation (Fig. 6).
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HNF3 DNA was
isolated, was 3 pg/ml (Fig. 6A). One hundred twenty-three days after
OLT, HBV reinfection occurred. Sequencing of the enhancer I region
revealed a wt HNF3 motif. At this time point, HBV replication increased
to 730 pg/ml. At both time points, before and after OLT, the sera were
HBsAg positive. However, before OLT no HBeAg was detected, but it was
positive at the time of HBV reinfection (Fig. 6A).
In the sera of the second patient carrying the
HNF4 motif, 15 pg of
HBV DNA/ml was detectable before OLT (Fig. 6B). HBV reinfection occurred 730 days after liver transplantation, and HBV DNA levels varied between 450 and 580 pg/ml as determined at time points between
730 and 1,087 days after OLT. Analysis of the HBV enhancer I region
after OLT revealed a wt HNF4 motif. In this patient at both time
points, before and after OLT, HBsAg and HBeAg were positive (Fig. 6B).
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DISCUSSION |
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Chronic HBV infection reflects the permanent interaction of the immune system with viral epitopes (12, 32). Escape mutants, which are selected in the viral genome during the course of infection, contribute to the persistence of the virus and may also result in a more progressive form of liver disease. During chronic HBV infection, two stages of viremia can frequently be distinguished. Directly after HBV infection, high HBV DNA levels are found associated with a strong inflammatory response in the liver. Later, during infection, HBV replication decreases and may be associated with seroconversion from HBeAg to anti-HBe (28). However, seroconversion from HBeAg to anti-HBe does not necessarily indicate that HBV DNA levels have decreased. For example, selection of a stop mutation in the pre-C region results in a lack of HBeAg expression, leading to an anti-HBe status and increased viral replication (20, 25).
The switch between a high- and a low-replicative period during chronic HBV infection has not been addressed so far. This clinical observation led us to hypothesize that mutations resulting in decreased HBV replication may also be able to escape the host's immune response. Ideally, an escape mutation would lead to both decreased expression of viral epitopes and diminished replication of the virus. Such a mutation would most likely affect the regulation of several viral genes rather than affecting the function of a single protein. A candidate region for this type of mutation is the enhancer I sequence within the HBV genome. Originally identified as a regulatory motif able to influence the expression of different viral genes (34), the enhancer I region may be a potential target for mutations leading to escape from the immune system.
We therefore sequenced the enhancer I regions of 10 patients with chronic HBV infection prior to OLT. In the majority of these viral sequences, the enhancer I region was mutated, resulting in decreased transcriptional activity of viral and heterologous promoters. The lowest activity was detected when enhancer I sequences with mutations in the previously described HNF3 and -4 transcription factor binding sites were tested (11, 18, 30).
These sites are located in the enhancer I core domain, which has the strongest impact on transcriptional activation of HBV genes. To characterize the molecular mechanism responsible for this loss of activity in more detail, we examined the abilities of HNF3 and -4 to bind to these mutated sequences.
Surprisingly, the minor sequence changes we detected in the enhancer I
regions of these two patients almost entirely abolished the binding of
these transcription factors. In agreement with the loss of
transcriptional activity, we detected dramatically decreased levels of
pregenomic RNA (40% for
HNF3 and 20% for
HNF4) and an even
stronger reduction in X mRNA expression (25% for
HNF3 and 18% for
HNF4). A less pronounced effect was evident for the pre-S and S
mRNAs (70% for
HNF3 and 60% for
HNF4), supporting the
observation that an element outside of the enhancer I region is
essential for the control of the two S promoters (47). Not surprisingly, these remarkable reductions in transcriptional activity resulted in significant changes in the expression of core protein levels (
HNF3, 30%, and
HNF4, 15%) and nucleocapsid assembly (25% progeny DNA for
HNF4 and 8% for the
HNF3 mutant) compared with a wt HBV genome.
Analyzing the mutated enhancer I sequence within the background of a wt
HBV genome helped us to specifically determine the roles of mutations
in this region. The coding sequence of the viral polymerase, however,
overlaps the enhancer I sequence (17). The mutations we
described result in amino acid changes in the corresponding polymerase
sequences for
HNF3 (Leu to Pro and Ser to Cys) and for the single
HNF4 point mutation (Met to Ile). These mutations were located in
the reverse-transcription domain of the viral polymerase. These
polymerase mutations may lead to a reduction in HBV polymerase
activity. However, our results as shown in Fig. 5 indicate that in the
mutated viral strains the amounts of viral RNA, viral capsids, and HBV
progeny DNA are significantly reduced, leading to a comparable
decrease. While the expression of viral RNA and HBV core protein is
independent of the HBV polymerase activity, our results also indicate
that the capsid-to-progeny DNA ratio is not changed between the wt and
the mutant strains. Therefore, these results revealed that the
encapsidated wt and mutant HBV polymerase seem to have comparable
activities, and thus the change in the polymerase has no major
influence on the replication level of the mutant viruses.
The in vitro studies presented here illustrate the effects
HNF3 and
HNF4 mutations have on the expression of viral proteins and the
assembly of virus particles. They are important for understanding the
molecular mechanisms which may be responsible for the decreased replication and immunogenicity of HBV in chronic carriers. The clinical
significance of the enhancer mutations, however, is very difficult to
assess. When we first detected the
HNF3 and
HNF4 mutations, the
amount of HBV DNA was measured as 3 pg/ml in patient 1 and 15 pg/ml in
patient 3, possibly reflecting the effects of these mutations on virus
replication in vivo. After liver transplantation, however, both
patients were reinfected with HBV. Patient 1 showed a 240-fold increase
and patient 3 showed a 40-fold increase in HBV DNA levels. Sequencing
of the enhancer I regions in both patients revealed the wt HBV
sequence. In general, in patients undergoing liver transplantation HBV
replication increases compared to the pre-OLT level (36).
These patients receive lifelong immunosuppressive therapy, and it has
been demonstrated that the glucocorticoids especially increase HBV
replication through a glucocorticoid-responsive element in the HBV
genome (42, 43). At the time of reinfection, however, both
patients received only very low doses (2.5 and 5 mg, respectively) of
this immunosuppressive drug. Thus, the increase in HBV replication
after OLT cannot simply be explained by glucocorticoid responsiveness.
All 10 patients with chronic active HBV infection investigated in this
study had mutations in the enhancer I region. We believe that these
mutations may influence replication and immunogenicity of the virus to
different degrees. While mutations like
HNF3 and
HNF4 abolish the
binding of important transcription factors, other mutations might only
exert an effect in association with mutations in the enhancer I region
or elsewhere in the HBV genome. Mutating regulatory sequences in the
HBV genome allows the virus to affect different functions, such as
protein expression, virus assembly, and expression of epitopes,
simultaneously, which under the selective pressure of the host's
immune system might provide an efficient escape mechanism.
In summary, our experiments describe a new form of escape mechanism which controls the level of HBV replication. Therefore, enhancer I mutants seem to be involved in explaining the clinical observation that two stages of viremia during chronic HBV infection can be differentiated: a high- and a low-replicative period.
| |
ACKNOWLEDGMENTS |
|---|
We thank H. A. Sundberg for critical reading of the manuscript and R. Raupach and P. Magerstedt for excellent technical assistance.
This work was supported by SFB 265/C5.
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Department of Gastroenterology and Hepatology, Medizinische Hochschule Hannover, Carl-Neuberg-Str. 1, D-30625 Hannover, Germany. Phone: 49-511-532-3489. Fax: 49-511-532-4896. E-mail: Trautwein.Christian{at}MH-Hannover.de.
This work is dedicated to K. H. Meyer zum
Büschenfelde on the occasion of his 70th birthday.
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