This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrowReprints and Permissions
Right arrow Copyright Information
Right arrow Books from ASM Press
Right arrow MicrobeWorld
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Kolykhalov, A. A.
Right arrow Articles by Rice, C. M.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Kolykhalov, A. A.
Right arrow Articles by Rice, C. M.

 Previous Article  |  Next Article 

Journal of Virology, February 2000, p. 2046-2051, Vol. 74, No. 4
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.

Hepatitis C Virus-Encoded Enzymatic Activities and Conserved RNA Elements in the 3' Nontranslated Region Are Essential for Virus Replication In Vivo

Alexander A. Kolykhalov,1 Kathy Mihalik,2 Stephen M. Feinstone,2 and Charles M. Rice1,*

Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri 63110-1093,1 and Division of Virology, Center for Biologics Evaluation and Research, Food and Drug Administration, Bethesda, Maryland 208922

Received 7 July 1999/Accepted 22 November 1999


    ABSTRACT
Top
Abstract
Text
References

Hepatitis C virus (HCV) infection is a widespread major human health concern. Significant obstacles in the study of this virus include the absence of a reliable tissue culture system and a small-animal model. Recently, we constructed full-length HCV cDNA clones and successfully initiated HCV infection in two chimpanzees by intrahepatic injection of in vitro-transcribed RNA (A. A. Kolykhalov et al., Science 277:570-574, 1997). In order to validate potential targets for development of anti-HCV therapeutics, we constructed six mutant derivatives of this prototype infectious clone. Four clones contained point mutations ablating the activity of the NS2-3 protease, the NS3-4A serine protease, the NS3 NTPase/helicase, and the NS5B polymerase. Two additional clones contained deletions encompassing all or part of the highly conserved 98-base sequence at the 3' terminus of the HCV genome RNA. The RNA transcript from each of the six clones was injected intrahepatically into a chimpanzee. No signs of HCV infection were detected in the 8 months following the injection. Inoculation of the same animal with nonmutant RNA transcripts resulted in productive HCV infection, as evidenced by viremia, elevated serum alanine aminotransferase, and HCV-specific seroconversion. These data suggest that these four HCV-encoded enzymatic activities and the conserved 3' terminal RNA element are essential for productive replication in vivo.


    TEXT
Top
Abstract
Text
References

Prior to the development of specific blood donor screening assays, hepatitis C virus (HCV) was the major cause of transfusion-associated hepatitis (see reference 25 for a review). While transfusion-associated HCV infections are rare, about 30,000 new cases of hepatitis C are estimated to occur in the United States each year. HCV is not easily cleared by the host's immunological defenses; as many as 85% of the people infected with HCV become chronically infected. Many of these persistent infections result in chronic liver disease, including cirrhosis and hepatocellular carcinoma (24). There are an estimated 170 million HCV carriers worldwide, and HCV-associated end-stage liver disease is now the leading cause of liver transplantation. In the United States alone, hepatitis C is responsible for 8,000 to 10,000 deaths annually, and without effective intervention, that number is predicted to triple in the next 10 to 20 years. There is no vaccine to prevent hepatitis C infection. Prolonged treatment of chronically HCV-infected patients with interferon or interferon plus ribavirin is the only currently approved therapy, but it results in a sustained response in fewer than 50% of the cases (37, 46).

HCV belongs to the family Flaviviridae, which comprises three genera of small enveloped positive-strand RNA viruses (see reference 47 and references therein). The 9.6-kb genome of HCV consists of a long open reading frame (ORF) flanked by 5' and 3' nontranslated regions (NTRs). The HCV 5' NTR is 341 nucleotides in length and functions as an internal ribosome entry site for cap-independent translation initiation (34). The HCV polyprotein is cleaved co- and posttranslationally into at least 10 individual polypeptides (for a review, see reference 45). The structural proteins result from signal peptidase cleavages in the N terminal portion of the polyprotein. Two viral proteases mediate downstream cleavages to produce nonstructural (NS) proteins that function as components of the HCV RNA replicase. The NS2-3 protease spans the C terminal half of NS2 and the N terminal one-third of NS3 and catalyzes autocatalytic cis cleavage at the 2/3 site. The same portion of NS3 also encodes the catalytic domain of the NS3-4A serine protease that cleaves at four downstream sites. The C terminal two-thirds of NS3 is highly conserved among HCV isolates, with RNA-binding, RNA-stimulated NTPase, and RNA-unwinding activities. Although NS4B and the NS5A phosphoprotein are also likely components of the replicase, their specific roles are unknown. The C terminal polyprotein cleavage product, NS5B, is the elongation subunit of the HCV replicase possessing RNA-dependent RNA polymerase (RDRP) activity (5, 38). Following a translation stop codon, the HCV 3' NTR consists of three subregions: (i) a 28- to 42-base sequence that varies among genotypes, (ii) an internal poly(U/UC) tract of variable length with rare A or G residues, and (iii) a highly conserved 3' terminal 98-base sequence (33, 49, 50, 54). This recently discovered 98-base element is the most highly conserved RNA sequence in the HCV genome, but two surprising reports suggest that it is not essential for virus replication (13, 58).

The development of new and specific anti-HCV treatments is a high priority, and virus-specific functions essential for replication are the most attractive targets for drug development. In the case of HCV, it has been assumed that conserved features are essential, but this has not been experimentally testable. Assembly of functional HCV cDNA clones (31) has now allowed us to directly assess the functional importance of HCV-encoded enzymatic activities and RNA elements by site-directed mutagenesis. Here, we report the in vivo characterization of mutants defective in each of the four known HCV-encoded enzymatic activities or lacking all or part of the conserved 3' terminal sequence.

Construction of mutant HCV full-length cDNA clones. The infectious full-length consensus HCV cDNA clone p90/HCVFLlongpU, containing a 133-base poly(U/UC) tract and no additional 5' terminal nucleotides (31; subsequently referred to as HCV FL), was used as the backbone for construction of six mutant clones (Fig. 1). We inactivated each of the four known HCV-encoded enzymatic activities by mutating at least two amino acid residues essential or important for function (Fig. 1A). Multiple substitutions were created to avoid the generation of same-site revertants during transcription with T7 RNA polymerase, which has a relatively high error rate (~6 × 10-5 per nucleotide (7). In HCV FL(2-3pro-), the NS2-3 protease was inactivated by incorporating the H952A and C993A substitutions. Although it is not known if these NS2 residues participate directly in catalysis, either substitution abolishes processing at the 2/3 site (18, 22). For HCV FL(3pro-), two residues in the NS3-4A serine protease catalytic triad were changed to alanine (D1107A and S1165A). Either of these substitutions abolishes detectable processing at the downstream 3/4A, 4A/4B, 4B/5A, and 5A/5B cleavage sites (17, 22). HCV FL(hel-) contained two mutations designed to inactivate the NS3 helicase activity. Based on the presence of a DECH motif (polyprotein residues 1316 to 1319), the HCV helicase belongs to the DExH family of DEAD-box helicases (16). The first two residues of this motif are invariant, with the Asp residue binding Mg2+-ATP (44). Substitution for either of these residues disrupts NTPase and helicase activities (19); both were mutated to Ala in HCV FL(hel-). Finally, the NS5B RDRP was destroyed in HCV FL(pol-) by replacing the Gly-Asp-Asp (GDD) sequence with Ala-Ala-Gly. This polymerase motif is conserved among all plus-stranded RNA viruses (43), and mutating any of these three residues inhibits or abolishes the RDRP activity of purified HCV NS5B (26, 38).


View larger version (15K):
[in this window]
[in a new window]
 
FIG. 1.   Diagram of the HCV genome and mutant constructs. All mutant derivatives were constructed on the background of HCV FL, and their structures were verified by sequence analysis. Mutants are described by the nucleotide positions and substitutions (lowercase letters) relative to HCV FL (31); sequences of the oligonucleotides used for mutagenesis, plasmid manipulations, and complete sequence files are available upon request. (A) The HCV genome organization is shown at the top with 5' and 3' NTRs (solid lines), and the ORF (open box) and the polyprotein cleavage products are indicated. Mutant full-length clones are shown below, highlighting the regions encoding the four enzymatic activities (shadowed), the positions of the mutations (asterisks), and the construct names (at the left). HCV FL(2-3pro-) contains the amino acid substitutions H952A (3195 to 3200; gcgtTa) and C993A (3318 to 3319; gc). HCV FL(3pro-) contains the substitutions D1107A (3660 to 3664; gcctt) and S1165A (3831 to 3836; agCgCt). HCV FL(hel-) contains the substitutions D1316A (4286 to 4289; cGca) and E1317A (4291 to 4292; ca). HCV FL(pol-) contains the substitutions G2737A (8551 to 8552; cg), D2738A (8554; c), and D2739G (8557 to 8559; gCc). (B) Organization of the 3' portion of HCV genome RNA showing (5' to 3') the C-terminal part of the ORF (open box), the polyprotein translation termination codon (UGA), the variable part of the 3' NTR (solid straight line), the poly(U/UC) tract, the highly conserved 52-base sequence (curved line), and the 3' terminal 46-base stem-loop structure (SL I). Mutant clones are shown below with their corresponding names to the right. HCV FL(3'Delta 52) is identical to HCV FL, except for an internal deletion encompassing the 5' 52 bases of the 3' terminal 98-base sequence. For HCV FL(3'Delta 98), the entire 3' 98-base sequence was deleted. A novel restriction site (NsiI) distinguishing HCV FL(3'Delta 52) from HCV FL(3'Delta 98) is indicated. nucl., nucleotides.

Two additional clones were constructed to test the functional importance of the conserved portion of the 3' NTR (the 98-base sequence or X tail) (33, 49, 50, 54). In HCV FL(3'Delta 98), the entire 3' 98-base sequence was deleted so that runoff RNA transcripts would terminate immediately following the poly(U/UC) tract (Fig. 1B). HCV FL(3'Delta 52) contained a smaller deletion encompassing the 52 invariant nucleotides between the poly(U/UC) tract and the 3' terminal 46-base stem-loop structure (SL I; 6). Both 3' NTR deletion constructs contained a nucleotide substitution (C519T) that was previously shown to be tolerated by HCV (31). In addition, HCV FL(3'Delta 52) could be distinguished from HCV FL(3'Delta 98) by an NsiI site at position 9547 that was fortuitously created by the fused sequences (Fig. 1B).

Prior to the animal experiment, translation and polyprotein processing of HCV FL and the mutant constructs were compared by transient expression in cell culture. Since the constructs contain a T7 RNA polymerase-specific promoter upstream of the HCV sequence, plasmid DNAs were transfected into BHK-21 cells previously infected with recombinant vaccinia virus vTF7-3, which expresses the T7 RNA polymerase. For all constructs, the expression level and electrophoretic mobility of the E1 glycoprotein were similar to those observed for HCV FL (data not shown). For the NS proteins, the expected processing patterns were observed (Fig. 2). Processing at the 2/3 site was abolished with HCV FL(2/3pro-), but processing at other sites was not affected, as shown by the presence of NS4A, NS4B, NS5A, and NS5B. Unprocessed E2-p7-NS2-NS3, with a molecular mass of ~180 kDa, was also detected, presumably as a result of inefficient processing at the E2/p7 and p7/NS2 sites (35, 41, 48). For HCV FL(3pro-), processing at serine protease-dependent sites was blocked but could be restored by cotransfection of the functional protease domain (NS3181; 36). In this case, in addition to the individual NS proteins, an NS3-4A precursor was also observed as a result of inefficient trans cleavage at the 3/4A site (see, for example, reference 15). Processing of the HCV FL(hel-) polyprotein revealed patterns identical to those of HCV FL, except that NS3 migrated slightly faster than the wild-type protein as a result of the two engineered substitutions. The protein patterns of HCV FL(pol-), HCV FL(3'Delta 98), and HCV FL(3'Delta 52) were indistinguishable from those of HCV FL (Fig. 2).


View larger version (85K):
[in this window]
[in a new window]
 
FIG. 2.   Polyprotein processing by HCV FL and mutant derivatives. Transfection of HCV FL (wt) or mutant plasmid DNAs (indicated at the top), protein labeling, immunoprecipitation of 35S-labeled proteins with HCV-specific sera, and the analysis of the immune complexes by sodium dodecyl sulfate-polyacrylamide gel electrophoresis were conducted as described previously (32). pGEM3Zf(+) was transfected as a negative control (mock). Products were immunoprecipitated with patient serum JHF recognizing NS3, NS4A, NS4B, and NS5A (A and B) or rabbit anti-NS5B (C); separated by sodium dodecyl sulfate-12 or 9% polyacrylamide gel electrophoresis, respectively; and visualized by autoradiography. The positions of molecular weight markers are shown on the left (in kilodaltons); HCV-specific polyproteins and cleavage products are identified on the right. The ~21-kDa species which is observed in the HCV FL(3pro-)-NS3181 cotransfection is an N terminally truncated form of the NS4B protein (32). The values on the left are molecular sizes in kilodaltons.

Infectivity of mutant HCV RNAs in vivo. Chimpanzee 1552 (Ch1552) was used to assess the infectivity of mutant transcripts. Ch1552 had been inoculated 2 years prior to this study with RNA transcripts from 17 nonconsensus clones from an original HCV cDNA library (31). Follow-up of Ch1552 for 6 months did not reveal any evidence of productive HCV infection: serum alanine aminotransferase (ALT) remained steady at the preinoculation level, HCV RNA was not detectable by reverse transcription (RT)-PCR, no HCV-specific antibodies were registered, and no signs of hepatitis or inflammation were detected in liver biopsies. Just prior to the current study, Ch1552 was negative for HCV RNA by RT-PCR, was seronegative by anti-HCV enzyme-linked immunosorbent assay (ELISA) 3.0, and had normal ALT levels.

The six mutant plasmid DNAs were linearized following the 3' end of the HCV cDNA and transcribed with T7 RNA polymerase. RNA transcripts were injected directly into the surgically exposed liver of Ch1552, with each transcript preparation injected into four sites. Separate injections of each RNA at different sites minimized the possibility of cotransfection of the same cell(s) with multiple RNAs capable of complementing one another, resulting in the initiation of replication and/or recombination between RNAs to generate an infectious RNA. After inoculation, Ch1552 was followed up for 32 weeks and showed no signs of productive HCV replication: ALT remained at the preinjection level: serum samples from weeks 5, 9, 15, and 18 were negative for HCV-specific antibodies, as determined by a commercial third-generation HCV ELISA; and HCV RNA was undetectable in the serum. Competitive quantitative RT-nested PCR was used to analyze pre- and postinoculation samples from weeks -9, 0, 1 to 13, 21, 25, and 32. In all of these samples, HCV RNA was undetectable (detection limit: 300 to 500 RNA molecules per ml of serum).

To demonstrate that Ch1552 could be productively infected by in vitro-synthesized RNA, the animal was challenged at week 32 with HCV FL RNA. To avoid another surgical procedure, intrahepatic injections were performed percutaneously, once through a biopsy needle and four times through lumbar puncture needles. After challenge, serum ALT levels indicated a typical HCV infection. Prechallenge values were observed for the first 7 weeks, followed by a sharp rise, a peak at week 42 (week 10 postchallenge), and then a return to the prechallenge level by week 45 (Fig. 3A). Circulating HCV RNA was detected 1 week after challenge, and the titers (measured using the ABI PRISM 7700 Sequence Detection System [PE Applied Biosystems, Foster City, Calif.]) gradually increased from 2 × 105 RNA molecules per ml on week 33 to ~1 × 107 RNA molecules per ml on weeks 39 through 41. After serum ALT had peaked, HCV RNA declined to 1 × 106 to 2 × 106 on week 42, dropped sharply on week 44 (to 5 × 104 per ml), and then remained steady for 3 or 4 weeks before becoming undetectable by week 48. Even by RT-nested PCR, HCV RNA was not detected in any sample after week 48 (detection limit, 100 to 300 RNA molecules per ml of serum).


View larger version (21K):
[in this window]
[in a new window]
 
FIG. 3.   Analysis of Ch1552 samples. RNA transcription and inoculation of RNAs into the liver were performed as described previously (31). For each RNA, approximately 150 µg of RNA in phosphate-buffered saline (PBS) was injected into two separate sites, and 1 µg of an RNA-Lipofectin-PBS mixture was also injected at two separate sites. Ch1552 was challenged at week 32 with infectious HCV FL RNA transcripts using nonsurgical procedures. One hundred micrograms of RNA in 1 ml of PBS was injected into the liver percutaneously through a biopsy needle. Three additional intrahepatic injections of 100 µg of RNA in 1 ml of PBS per injection were administered with a lumbar puncture needle. A fifth lumbar puncture needle injection was performed with 3 µg of RNA mixed with 30 µl of Lipofectin and PBS in a total volume of 0.5 ml. (A) Serum ALT, HCV RNA (molecules per milliliter), and HCV-specific antibodies (Ab; as measured by HCV ELISA 3.0). (B) Detection of HCV-specific antibodies by Ortho HCV version 3.0 ELISA and by Chiron RIBA 2.0. For the RIBA 2.0, the open box indicates HCV-seronegative serum samples and the solid bar (beginning at week 41) indicates positive samples. OD490, optical density at 490 nm.

Circulating HCV-specific antibodies were analyzed using commercial third-generation HCV ELISA 3.0 (Fig. 3A and B). Antibodies were detectable as early as 2 weeks after challenge. Two response peaks were observed. After a sharp increase on week 34, ELISA-reactive antibody levels decreased during weeks 36 to 40 and then rose again starting at week 41 to week 42. The second increase in HCV-specific antibody coincided with elevated ALT. Interestingly, the presence of HCV-specific antibodies on weeks 34 through 41 was not confirmed by second-generation Chiron RIBA HCV 2.0 Strip Immunoblot Assay (RIBA 2.0). This can be explained by an early antibody response to NS5, since this antigen is present in the ELISA 3.0 but not in the RIBA 2.0. NS3-specific antibodies were detected by RIBA 2.0 beginning at week 10 postchallenge, but no other HCV-specific reactivity was detected during the course of this study.

Concluding remarks. Although two groups have reported productive HCV replication after transfection of cell cultures with transcribed RNA (13, 58), no follow-up studies have been published, nor have these systems been used to delineate essential viral functions. In this study, we exploited the chimpanzee model, which has been extensively used for HCV studies and in particular for initiating infection by intrahepatic inoculation of RNA transcribed from functional HCV cDNA (23, 31, 55, 57). While this approach does not lend itself to mechanistic studies, we can define functions essential for replication in this stringent animal model to validate or uncover new targets for anti-HCV drug development.

We examined the four known HCV-encoded enzymes that are being actively pursued as antiviral targets. The two viral proteases mediate cleavages in the NS region that are thought to be necessary to form a functional RNA replicase. In the case of the NS3 serine protease, which is common to all members of the family Flaviviridae, previous work has demonstrated that this activity is essential for replication of the classical flaviviruses (10) and the animal pestiviruses (53). This observation can now be extended to HCV (although in no case do we know why processing of the polyprotein is important for replicase function). The NS2-3 protease, which mediates cis cleavage at the 2/3 site, is unique to HCV, although cleavage immediately upstream of the NS3 serine protease domain is also observed for both flaviviruses (see reference 47 for a review) and some pestiviruses (see reference 40 for a review). For classical flaviviruses like yellow fever virus, the functional serine protease is a heterodimer consisting of the upstream NS2B protein and NS3 (8). As in HCV, cleavage at the NS2B/3 site is autocatalytic, but for flaviviruses, the serine protease is responsible for this cleavage. Mutations which block processing at the NS2B/3 site are deleterious for yellow fever virus replication, although processing at downstream sites still occurs (9). For the pestiviruses, the situation is more complex. For noncytopathic isolates of bovine viral diarrhea virus (BVDV), the NS2-3 region remains unprocessed. In contrast, cytopathic BVDV isolates have usually undergone various RNA recombination events that lead to production of a discrete NS3 protein (40). Given the situation with noncytopathic pestiviruses, the recent report that NS2 is dispensable for BVDV replication (4) and the observations that some HCV cDNA clones fail to process at the 2/3 site (14; A. A. Kolykhalov, unpublished data), it was of interest to test the essential nature of the HCV NS2-3 protease. Our results indicate that this proteolytic activity is required for productive HCV replication, although we cannot exclude the possibility that the mutated NS2 residues are essential for some other function in the virus life cycle. The remaining two enzymatic activities, the NS3 NTPase/RNA helicase and the NS5B RDRP, are common to all members of the family and, more generally, to most positive-strand RNA viruses. The precise role(s) of such helicases in viral RNA replication is not known (29), but mutations inactivating the BVDV (E. Mendez, M. S. Collett, and C. M. Rice, unpublished data) or the HCV (this work) NS3 helicase were lethal. As expected, mutations ablating the NS5B RDRP activity were also lethal, underscoring the importance of this enzyme for HCV replication.

The HCV RNA element examined in this study was the conserved portion of the 3' NTR. Early reports indicated that the HCV genome RNA terminated with poly(A) (20) or poly(U) (for examples, see references 21, 30, and 42). Subsequently, it was discovered that the HCV 3' NTR is actually comprised of a short region that varies among genotypes, an internal poly(U/UC) tract, and a terminal element of 98 bases (33, 49, 50, 51, 54). The 98-base sequence consists of 52 invariant bases followed by 46 bases that form a highly stable 3' terminal stem-loop structure (6). It has been hypothesized that this element participates in RNA replication, in particular, the initiation of minus-strand RNA synthesis. Several groups have begun to uncover host RNA-binding proteins (11, 27, 39, 52), such as polypyrimidine tract-binding protein, that may function in HCV RNA replication and translation via interaction with the 3' NTR (28). In our study, RNAs lacking the 98-base element or those in which the 52-base invariant sequence was deleted were incapable of replication. While this report was in preparation, Yanagi et al. reported similar findings demonstrating that most HCV 3' NTR elements were essential for productive infection in vivo, with the exception of the variable region immediately following the ORF termination codon (56). Thus, the in vivo results conflict with the two reports claiming that transfected HCV RNAs lacking this sequence can replicate in cell culture (13, 58). Further work is needed to resolve these discrepancies and determine if the RNA elements required for in vivo versus cell culture replication differ. Nonetheless, the in vivo data validate the conserved 98-base RNA element as an attractive target for antisense oligonucleotides, trans-acting ribozymes, RNA decoys, or small molecules that block critical interactions with host or viral proteins.

An interesting observation of our study was the unexpected immune response profile of Ch1552. After inoculation of Ch1552 with the seven mutant full-length RNAs, HCV replication was undetectable and no HCV-specific serological response was detectable. However, upon challenge of Ch1552 with parental infectious RNA, we observed an unusually rapid (only 2 weeks after challenge) appearance of HCV-specific antibodies. This suggested possible priming of the immune system by HCV-specific antigens before challenge, as recently reported by Beard et al. (3). Indeed, this was confirmed by analysis of peripheral blood mononuclear cells taken from the animal at week 32 prechallenge, at which time T-cell responses against core, helicase, and polymerase antigens were readily detected (T. Arichi, M. Major, H. Wedemeyer, M. Nascimbeni, S. Gagneton, A. A. Kolykhalov, J. A. Berzofsky, C. M. Rice, S. M. Finestone, and B. Rehermann, unpublished data). Priming may have occurred via direct translation of injected replication-defective mutant RNAs or possibly because one or more of the mutant RNAs was capable of low-level replication. One feature of the early antibody response postchallenge was its apparent decline in weeks 36 to 40. This could indicate that insufficient antigen is produced in the early phase of HCV infection to sustain antibody responses induced by injection and translation of input RNA. Alternatively, the apparent dip in ELISA 3.0 reactivity may reflect the sequestration of HCV-specific antibodies in immune complexes. Although further follow-up is required, Ch1552 appears to have resolved HCV infection. Whether priming of HCV-specific T-cell responses prechallenge played a role in this clinical course is difficult to determine, since a majority of naive chimpanzees are able to spontaneously resolve acute HCV infections (1, 2). Nonetheless, a detailed analysis of the humoral and T-cell responses in this animal is in progress (Arichi et al., unpublished data) and should provide further data on immune responses that correlate with resolution (12). In addition, if Ch1552 has indeed resolved the infection, then this animal will allow us to determine if the immune responses leading to resolution are sufficient to protect against challenge with a truly homologous virus isolated in the acute phase of infection after transfection with clonal infectious RNA (31).

Although our experiments were limited to a single chimpanzee, initiation of HCV infection by injection of transcribed RNA has been remarkably reproducible and this animal was productively infected by this route. Thus, our results indicate that the two HCV-encoded proteases, the NTPase/helicase, the RNA-dependent RNA polymerase, and the conserved elements of the 3' NTR are essential for HCV replication in the chimpanzee. For mechanistic studies to determine how these enzymes and RNA elements actually function in HCV RNA replication, cell culture assay systems are sorely needed. The most straightforward approach to establishing such systems is to test the ability of transfected infectious RNAs to amplify and perhaps spread in cell culture. Toward this goal, the replication-defective mutants described in this study and validated in the chimpanzee transfection model can serve as useful negative controls to distinguish between authentic replication and persistence of transfected RNA.


    ACKNOWLEDGMENTS

We thank Scott Baginski, Keril Blight, Mara Lippa, and Tina Myers for critical reading of the manuscript.

This work was supported in part by grants from the Public Health Service to C.M.R. (CA57973 and AI40034).


    FOOTNOTES

* Corresponding author. Mailing address: Department of Molecular Microbiology, Campus Box 8230, Washington University School of Medicine, 660 S. Euclid Ave., St. Louis, MO 63110-1093. Phone: (314) 362-2842. Fax: (314) 362-1232. E-mail: rice{at}borcim.wustl.edu.


    REFERENCES
Top
Abstract
Text
References

1. Bassett, S. E., K. M. Brasky, and R. E. Lanford. 1998. Analysis of hepatitis C virus-inoculated chimpanzees reveals unexpected clinical profiles. J. Virol. 72:2589-2599[Abstract/Free Full Text].
2. Bassett, S. E., D. L. Thomas, K. M. Brasky, and R. E. Lanford. 1999. Viral persistence, antibody to E1 and E2, and hypervariable region 1 sequence stability in hepatitis C virus-inoculated chimpanzees. J. Virol. 73:1118-1126[Abstract/Free Full Text].
3. Beard, M. R., G. Abell, M. Honda, A. Carroll, M. Gartland, B. Clarke, K. Suzuki, R. Lanford, D. V. Sangar, and S. M. Lemon. 1999. An infectious molecular clone of a Japanese genotype 1b hepatitis C virus. Hepatology 30:316-324[CrossRef][Medline].
4. Behrens, S.-E., C. W. Grassmann, H.-J. Thiel, G. Meyers, and N. Tautz. 1998. Characterization of an autonomous subgenomic pestivirus RNA replicon. J. Virol. 72:2364-2372[Abstract/Free Full Text].
5. Behrens, S. E., L. Tomei, and R. DeFrancesco. 1996. Identification and properties of the RNA-dependent RNA polymerase of hepatitis C virus. EMBO J. 15:12-22[Medline].
6. Blight, K. J., and C. M. Rice. 1997. Secondary structure determination of the conserved 98-base sequence at the 3' terminus of hepatitis C virus genome RNA. J. Virol. 71:7345-7352[Abstract].
7. Boyer, J. C., K. Bebenek, and T. A. Kunkel. 1992. Unequal human immunodeficiency virus type 1 reverse transcriptase error rates with RNA and DNA templates. Proc. Natl. Acad. Sci. USA 89:6919-6923[Abstract/Free Full Text].
8. Chambers, T. J., A. Grakoui, and C. M. Rice. 1991. Processing of the yellow fever virus nonstructural polyprotein: a catalytically active NS3 proteinase domain and NS2B are required for cleavages at dibasic sites. J. Virol. 65:6042-6050[Abstract/Free Full Text].
9. Chambers, T. J., A. Nestorowicz, and C. M. Rice. 1995. Mutagenesis of the yellow fever virus NS2B/3 cleavage site: determinants of cleavage site specificity and effects on polyprotein processing and viral replication. J. Virol. 69:1600-1605[Abstract].
10. Chambers, T. J., R. C. Weir, A. Grakoui, D. W. McCourt, J. F. Bazan, R. J. Fletterick, and C. M. Rice. 1990. Evidence that the N-terminal domain of nonstructural protein NS3 from yellow fever virus is a serine protease responsible for site-specific cleavages in the viral polyprotein. Proc. Natl. Acad. Sci. USA 87:8898-8902[Abstract/Free Full Text].
11. Chung, R. T., and L. M. Kaplan. 1999. Heterogeneous nuclear ribonucleoprotein I (hnRNP-I/PTB) selectively binds the conserved 3' terminus of hepatitis C viral RNA. Biochem. Biophys. Res. Commun. 254:351-362[CrossRef][Medline].
12. Cooper, S., A. L. Erickson, E. J. Adams, J. Kansopon, A. J. Weiner, D. Y. Chien, M. Houghton, P. Parham, and C. M. Walker. 1999. Analysis of a successful immune response against hepatitis C virus. Immunity 10:439-449[CrossRef][Medline].
13. Dash, S., A.-B. Halim, H. Tsuji, N. Hiramatsu, and M. A. Gerber. 1997. Transfection of HepG2 cells with infectious hepatitis C virus genome. Am. J. Pathol. 151:363-373[Abstract].
14. D'Souza, E. D., E. O'Sullivan, E. M. Amphlett, D. J. Rowlands, D. V. Sangar, and B. E. Clarke. 1994. Analysis of NS3-mediated processing of the hepatitis C virus non-structural region in vitro. J. Gen. Virol. 75:3469-3476[Abstract/Free Full Text].
15. Failla, C., L. Tomei, and R. DeFrancesco. 1994. Both NS3 and NS4A are required for proteolytic processing of hepatitis C virus nonstructural proteins. J. Virol. 68:3753-3760[Abstract/Free Full Text].
16. Gorbalenya, A. E., E. V. Koonin, A. P. Donchenko, and V. M. Blinov. 1989. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res. 17:4713-4729[Abstract/Free Full Text].
17. Grakoui, A., D. W. McCourt, C. Wychowski, S. M. Feinstone, and C. M. Rice. 1993. Characterization of the hepatitis C virus-encoded serine proteinase: determination of proteinase-dependent polyprotein cleavage sites. J. Virol. 67:2832-2843[Abstract/Free Full Text].
18. Grakoui, A., D. W. McCourt, C. Wychowski, S. M. Feinstone, and C. M. Rice. 1993. A second hepatitis C virus-encoded proteinase. Proc. Natl. Acad. Sci. USA 90:10583-10587[Abstract/Free Full Text].
19. Gross, C. H., and S. Shuman. 1995. Mutational analysis of vaccinia virus nucleoside triphosphate phosphohydrolase II, a DExH box RNA helicase. J. Virol. 69:4727-4736[Abstract].
20. Han, J. H., V. Shyamala, K. H. Richman, M. J. Brauer, B. Irvine, M. S. Urdea, P. Tekamp-Olson, G. Kuo, Q.-L. Choo, and M. Houghton. 1991. Characterization of the terminal regions of hepatitis C viral RNA: identification of conserved sequences in the 5' untranslated region and poly(A) tails at the 3' end. Proc. Natl. Acad. Sci. USA 88:1711-1715[Abstract/Free Full Text].
21. Hayashi, N., H. Higashi, K. Kaminaka, H. Sugimoto, M. Esumi, K. Komatsu, K. Hayashi, M. Sugitani, K. Suzuki, O. Tadao, C. Nozaki, K. Mizuno, and T. Shikata. 1993. Molecular cloning and heterogeneity of the human hepatitis C virus (HCV) genome. J. Hepatol. 17(Suppl. 3):S94-S107.
22. Hijikata, M., H. Mizushima, T. Akagi, S. Mori, N. Kakiuchi, N. Kato, T. Tanaka, K. Kimura, and K. Shimotohno. 1993. Two distinct proteinase activities required for the processing of a putative nonstructural precursor protein of hepatitis C virus. J. Virol. 67:4665-4675[Abstract/Free Full Text].
23. Hong, Z., M. Beaudet-Miller, R. E. Lanford, B. Guerra, J. Wright-Minogue, A. Skelton, B. M. Baroudy, G. R. Reyes, and J. Y. N. Lau. 1999. Generation of transmissible hepatitis C virions from a molecular clone in chimpanzees. Virology 256:36-44[CrossRef][Medline].
24. Hoofnagle, J. H. 1997. Hepatitis C: the clinical spectrum of disease. Hepatology 26:15S-20S[CrossRef][Medline].
25. Houghton, M. 1996. Hepatitis C viruses, p. 1035-1058. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Fields virology. Raven Press, Philadelphia, Pa.
26. Ishii, K., Y. Tanaka, C. C. Yap, H. Aizaki, Y. Matsuura, and T. Miyamura. 1999. Expression of hepatitis C virus NS5B protein: characterization of its RNA polymerase activity and RNA binding. Hepatology 29:1227-1235[CrossRef][Medline].
27. Ito, T., and M. M. C. Lai. 1997. Determination of the secondary structure of and cellular protein binding to the 3'-untranslated region of the hepatitis C virus RNA genome. J. Virol. 71:8698-8706[Abstract].
28. Ito, T., S. M. Tahara, and M. M. C. Lai. 1998. The 3'-untranslated region of hepatitis C virus RNA enhances translation from an internal ribosomal entry site. J. Virol. 72:8789-8796[Abstract/Free Full Text].
29. Kadaré, G., and A.-L. Haenni. 1997. Virus-encoded RNA helicases. J. Virol. 71:2583-2590[Medline].
30. Kato, N., M. Hijikata, Y. Ootsuyama, M. Nakagawa, S. Ohkoshi, T. Sugimura, and K. Shimotohno. 1990. Molecular cloning of the human hepatitis C virus genome from Japanese patients with non-A, non-B hepatitis. Proc. Natl. Acad. Sci. USA 87:9524-9528[Abstract/Free Full Text].
31. Kolykhalov, A. A., E. V. Agapov, K. J. Blight, K. Mihalik, S. M. Feinstone, and C. M. Rice. 1997. Transmission of hepatitis C by intrahepatic inoculation with transcribed RNA. Science 277:570-574[Abstract/Free Full Text].
32. Kolykhalov, A. A., E. V. Agapov, and C. M. Rice. 1994. Specificity of the hepatitis C virus serine proteinase: effects of substitutions at the 3/4A, 4A/4B, 4B/5A, and 5A/5B cleavage sites on polyprotein processing. J. Virol. 68:7525-7533[Abstract/Free Full Text].
33. Kolykhalov, A. A., S. M. Feinstone, and C. M. Rice. 1996. Identification of a highly conserved sequence element at the 3' terminus of hepatitis C virus genome RNA. J. Virol. 70:3363-3371[Abstract].
34. Lemon, S. H., and M. Honda. 1997. Internal ribosome entry sites within the RNA genomes of hepatitis C virus and other flaviviruses. Semin. Virol. 8:274-288[CrossRef].
35. Lin, C., B. D. Lindenbach, B. Prágai, D. W. McCourt, and C. M. Rice. 1994. Processing of the hepatitis C virus E2-NS2 region: identification of p7 and two distinct E2-specific products with different C termini. J. Virol. 68:5063-5073[Abstract/Free Full Text].
36. Lin, C., B. Prágai, A. Grakoui, J. Xu, and C. M. Rice. 1994. Hepatitis C virus NS3 serine proteinase: trans-cleavage requirements and processing kinetics. J. Virol. 68:8147-8157[Abstract/Free Full Text].
37. Lindsay, K. L. 1997. Therapy of hepatitis C: overview. Hepatology 26:71S-77S[CrossRef][Medline].
38. Lohmann, V., F. Körner, U. Herian, and R. Bartenschlager. 1997. Biochemical properties of hepatitis C virus NS5B RNA-dependent RNA polymerase and identification of amino acid sequence motifs essential for enzymatic activity. J. Virol. 71:8416-8428[Abstract].
39. Luo, G. 1999. Cellular proteins bind to the poly(U) tract of the 3' untranslated region of hepatitis C virus RNA genome. Virology 256:105-118[CrossRef][Medline].
40. Meyers, G., and H.-J. Thiel. 1996. Molecular characterization of pestiviruses. Adv. Virus Res. 47:53-118[Medline].
41. Mizushima, H., H. Hijikata, S.-I. Asabe, M. Hirota, K. Kimura, and K. Shimotohno. 1994. Two hepatitis C virus glycoprotein E2 products with different C termini. J. Virol. 68:6215-6222[Abstract/Free Full Text].
42. Okamoto, H., S. Okada, Y. Sugiyama, K. Kurai, H. Iizuka, A. Machida, Y. Miyakawa, and M. Mayumi. 1991. Nucleotide sequence of the genomic RNA of hepatitis C virus isolated from a human carrier: comparison with reported isolates for conserved and divergent regions. J. Gen. Virol. 72:2697-2704[Abstract/Free Full Text].
43. O'Reilly, E. K., and C. C. Kao. 1998. Analysis of RNA-dependent RNA polymerase structure and function as guided by known polymerase structures and computer predictions of secondary structure. Virology 252:287-303[CrossRef][Medline].
44. Pai, E. F., U. Krengel, G. A. Petsko, R. S. Gody, W. Katsh, and A. Wittinghofer. 1990. Refined crystal structure of the triphosphate conformation of H-Ras p21 at 1.35A resolution: implications for the mechanism of GTP hydrolysis. EMBO J. 9:2351-2359[Medline].
45. Reed, K. E., and C. M. Rice. 1999. Overview of hepatitis C virus genome structure, polyprotein processing, and protein properties. Curr. Top. Microbiol. Immunol. 242:55-84.
46. Reichard, O., R. Schvarcz, and O. Weiland. 1997. Therapy of hepatitis C: alpha interferon and ribavirin. Hepatology 26:108S-111S[CrossRef][Medline].
47. Rice, C. M. 1996. Flaviviridae: the viruses and their replication, p. 931-960. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Fields virology. Lippincott-Raven Publishers, Philadelphia, Pa.
48. Selby, M. J., E. Glazer, F. Masiarz, and M. Houghton. 1994. Complex processing and protein:protein interactions in the E2:NS2 region of HCV. Virology 204:114-122[CrossRef][Medline].
49. Tanaka, T., N. Kato, M.-J. Cho, and K. Shimotohno. 1995. A novel sequence found at the 3' terminus of hepatitis C virus genome. Biochem. Biophys. Res. Commun. 215:744-749[CrossRef][Medline].
50. Tanaka, T., N. Kato, M.-J. Cho, K. Sugiyama, and K. Shimotohno. 1996. Structure of the 3' terminus of the hepatitis C virus genome. J. Virol. 70:3307-3312[Abstract].
51. Tokita, H., H. Okamoto, H. Iizuka, J. Kishimoto, F. Tsuda, Y. Miyakawa, and M. Mayumi. 1998. The entire nucleotide sequences of three hepatitis C virus isolates in genetic groups 7-9 and comparison with those in the other eight genetic groups. J. Gen. Virol. 79:1847-1857[Abstract].
52. Tsuchihara, K., T. Tanaka, M. Hijikata, S. Kuge, H. Toyoda, A. Nomoto, N. Yamamoto, and K. Shimotohno. 1997. Specific interaction of polypyrimidine tract-binding protein with the extreme 3'-terminal structure of the hepatitis C virus genome, the 3'X. J. Virol. 71:6720-6726[Abstract].
53. Xu, J., E. Mendez, P. R. Caron, C. Lin, M. A. Murcko, M. S. Collett, and C. M. Rice. 1997. Bovine viral diarrhea virus NS3 serine proteinase: polyprotein cleavage sites, cofactor requirements, and molecular model of an enzyme essential for pestivirus replication. J. Virol. 71:5312-5322[Abstract].
54. Yamada, N., K. Tanihara, A. Takada, T. Yorihuzi, M. Tsutsumi, H. Shimomura, T. Tsuji, and T. Date. 1996. Genetic organization and diversity of the 3' noncoding region of the hepatitis C virus genome. Virology 223:255-261[CrossRef][Medline].
55. Yanagi, M., R. H. Purcell, S. U. Emerson, and J. Bukh. 1997. Transcripts from a single full-length cDNA clone of hepatitis C virus are infectious when directly transfected into the liver of a chimpanzee. Proc. Natl. Acad. Sci. USA 94:8738-8743[Abstract/Free Full Text].
56. Yanagi, M., M. St. Claire, S. U. Emerson, R. H. Purcell, and J. Bukh. 1999. In vivo analysis of the 3' untranslated region of the hepatitis C virus after in vitro mutagenesis of an infectious cDNA clone. Proc. Natl. Acad. Sci. USA 96:2291-2295[Abstract/Free Full Text].
57. Yanagi, M., M. St. Claire, M. Shapiro, S. U. Emerson, R. H. Purcell, and J. Bukh. 1998. Transcripts of a chimeric cDNA clone of hepatitis C virus genotype 1b are infectious in vivo. Virology 244:161-172[CrossRef][Medline].
58. Yoo, B. J., M. Selby, J. Choe, B. S. Suh, S. H. Choi, J. S. Joh, G. J. Nuovo, H.-S. Lee, M. Houghton, and J. H. Han. 1995. Transfection of a differentiated human hepatoma cell line (Huh7) with in vitro-transcribed hepatitis C virus (HCV) RNA and establishment of a long-term culture persistently infected with HCV. J. Virol. 69:32-38[Abstract].


Journal of Virology, February 2000, p. 2046-2051, Vol. 74, No. 4
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.



This article has been cited by other articles:

  • Pan, K.-L., Lee, J.-C., Sung, H.-W., Chang, T.-Y., Hsu, J. T.-A. (2009). Development of NS3/4A Protease-Based Reporter Assay Suitable for Efficiently Assessing Hepatitis C Virus Infection. Antimicrob. Agents Chemother. 53: 4825-4834 [Abstract] [Full Text]  
  • Pacini, L., Graziani, R., Bartholomew, L., De Francesco, R., Paonessa, G. (2009). Naturally Occurring Hepatitis C Virus Subgenomic Deletion Mutants Replicate Efficiently in Huh-7 Cells and Are trans-Packaged In Vitro To Generate Infectious Defective Particles. J. Virol. 83: 9079-9093 [Abstract] [Full Text]  
  • Romero-Lopez, C., Berzal-Herranz, A. (2009). A long-range RNA-RNA interaction between the 5' and 3' ends of the HCV genome. RNA 15: 1740-1752 [Abstract] [Full Text]  
  • Phan, T., Beran, R. K. F., Peters, C., Lorenz, I. C., Lindenbach, B. D. (2009). Hepatitis C Virus NS2 Protein Contributes to Virus Particle Assembly via Opposing Epistatic Interactions with the E1-E2 Glycoprotein and NS3-NS4A Enzyme Complexes. J. Virol. 83: 8379-8395 [Abstract] [Full Text]  
  • Weinlich, S., Huttelmaier, S., Schierhorn, A., Behrens, S.-E., Ostareck-Lederer, A., Ostareck, D. H. (2009). IGF2BP1 enhances HCV IRES-mediated translation initiation via the 3'UTR. RNA 15: 1528-1542 [Abstract] [Full Text]  
  • Shi, S. T., Herlihy, K. J., Graham, J. P., Nonomiya, J., Rahavendran, S. V., Skor, H., Irvine, R., Binford, S., Tatlock, J., Li, H., Gonzalez, J., Linton, A., Patick, A. K., Lewis, C. (2009). Preclinical Characterization of PF-00868554, a Potent Nonnucleoside Inhibitor of the Hepatitis C Virus RNA-Dependent RNA Polymerase. Antimicrob. Agents Chemother. 53: 2544-2552 [Abstract] [Full Text]  
  • Welbourn, S., Jirasko, V., Breton, V., Reiss, S., Penin, F., Bartenschlager, R., Pause, A. (2009). Investigation of a role for lysine residues in non-structural proteins 2 and 2/3 of the hepatitis C virus for their degradation and virus assembly. J. Gen. Virol. 90: 1071-1080 [Abstract] [Full Text]  
  • Ujino, S., Yamaguchi, S., Shimotohno, K., Takaku, H. (2009). Heat-shock Protein 90 Is Essential for Stabilization of the Hepatitis C Virus Nonstructural Protein NS3. J. Biol. Chem. 284: 6841-6846 [Abstract] [Full Text]  
  • Jennings, T. A., Mackintosh, S. G., Harrison, M. K., Sikora, D., Sikora, B., Dave, B., Tackett, A. J., Cameron, C. E., Raney, K. D. (2009). NS3 Helicase from the Hepatitis C Virus Can Function as a Monomer or Oligomer Depending on Enzyme and Substrate Concentrations. J. Biol. Chem. 284: 4806-4814 [Abstract] [Full Text]  
  • Ferrari, E., He, Z., Palermo, R. E., Huang, H.-C. (2008). Hepatitis C Virus NS5B Polymerase Exhibits Distinct Nucleotide Requirements for Initiation and Elongation. J. Biol. Chem. 283: 33893-33901 [Abstract] [Full Text]  
  • Jirasko, V., Montserret, R., Appel, N., Janvier, A., Eustachi, L., Brohm, C., Steinmann, E., Pietschmann, T., Penin, F., Bartenschlager, R. (2008). Structural and Functional Characterization of Nonstructural Protein 2 for Its Role in Hepatitis C Virus Assembly. J. Biol. Chem. 283: 28546-28562 [Abstract] [Full Text]  
  • Herlihy, K. J., Graham, J. P., Kumpf, R., Patick, A. K., Duggal, R., Shi, S. T. (2008). Development of Intergenotypic Chimeric Replicons To Determine the Broad-Spectrum Antiviral Activities of Hepatitis C Virus Polymerase Inhibitors. Antimicrob. Agents Chemother. 52: 3523-3531 [Abstract] [Full Text]  
  • Ma, Y., Yates, J., Liang, Y., Lemon, S. M., Yi, M. (2008). NS3 Helicase Domains Involved in Infectious Intracellular Hepatitis C Virus Particle Assembly. J. Virol. 82: 7624-7639 [Abstract] [Full Text]  
  • Zhang, Z., Harris, D., Pandey, V. N. (2008). The FUSE Binding Protein Is a Cellular Factor Required for Efficient Replication of Hepatitis C Virus. J. Virol. 82: 5761-5773 [Abstract] [Full Text]  
  • Wolf, M., Dimitrova, M., Baumert, T. F., Schuster, C. (2008). The major form of hepatitis C virus alternate reading frame protein is suppressed by core protein expression. Nucleic Acids Res 36: 3054-3064 [Abstract] [Full Text]  
  • Xiao, M., Bai, Y., Xu, H., Geng, X., Chen, J., Wang, Y., Chen, J., Li, B. (2008). Effect of NS3 and NS5B proteins on classical swine fever virus internal ribosome entry site-mediated translation and its host cellular translation. J. Gen. Virol. 89: 994-999 [Abstract] [Full Text]  
  • Shi, S. T., Herlihy, K. J., Graham, J. P., Fuhrman, S. A., Doan, C., Parge, H., Hickey, M., Gao, J., Yu, X., Chau, F., Gonzalez, J., Li, H., Lewis, C., Patick, A. K., Duggal, R. (2008). In Vitro Resistance Study of AG-021541, a Novel Nonnucleoside Inhibitor of the Hepatitis C Virus RNA-Dependent RNA Polymerase. Antimicrob. Agents Chemother. 52: 675-683 [Abstract] [Full Text]  
  • Tellinghuisen, T. L., Evans, M. J., von Hahn, T., You, S., Rice, C. M. (2007). Studying Hepatitis C Virus: Making the Best of a Bad Virus. J. Virol. 81: 8853-8867 [Full Text]  
  • Jones, C. T., Murray, C. L., Eastman, D. K., Tassello, J., Rice, C. M. (2007). Hepatitis C Virus p7 and NS2 Proteins Are Essential for Production of Infectious Virus. J. Virol. 81: 8374-8383 [Abstract] [Full Text]  
  • Zhou, Y., Muh, U., Hanzelka, B. L., Bartels, D. J., Wei, Y., Rao, B. G., Brennan, D. L., Tigges, A. M., Swenson, L., Kwong, A. D., Lin, C. (2007). Phenotypic and Structural Analyses of Hepatitis C Virus NS3 Protease Arg155 Variants: SENSITIVITY TO TELAPREVIR (VX-950) AND INTERFERON {alpha}. J. Biol. Chem. 282: 22619-22628 [Abstract] [Full Text]  
  • Donmez, I., Rajagopal, V., Jeong, Y.-J., Patel, S. S. (2007). Nucleic Acid Unwinding by Hepatitis C Virus and Bacteriophage T7 Helicases Is Sensitive to Base Pair Stability. J. Biol. Chem. 282: 21116-21123 [Abstract] [Full Text]  
  • Sakai, A., Takikawa, S., Thimme, R., Meunier, J.-C., Spangenberg, H. C., Govindarajan, S., Farci, P., Emerson, S. U., Chisari, F. V., Purcell, R. H., Bukh, J. (2007). In Vivo Study of the HC-TN Strain of Hepatitis C Virus Recovered from a Patient with Fulminant Hepatitis: RNA Transcripts of a Molecular Clone (pHC-TN) Are Infectious in Chimpanzees but Not in Huh7.5 Cells. J. Virol. 81: 7208-7219 [Abstract] [Full Text]  
  • Blight, K. J. (2007). Allelic Variation in the Hepatitis C Virus NS4B Protein Dramatically Influences RNA Replication. J. Virol. 81: 5724-5736 [Abstract] [Full Text]  
  • Kusakawa, T., Shimakami, T., Kaneko, S., Yoshioka, K., Murakami, S. (2007). Functional Interaction of Hepatitis C Virus NS5B with Nucleolin GAR Domain. J Biochem 141: 917-927 [Abstract] [Full Text]  
  • Binder, M., Quinkert, D., Bochkarova, O., Klein, R., Kezmic, N., Bartenschlager, R., Lohmann, V. (2007). Identification of Determinants Involved in Initiation of Hepatitis C Virus RNA Synthesis by Using Intergenotypic Replicase Chimeras. J. Virol. 81: 5270-5283 [Abstract] [Full Text]  
  • Kim, C. S., Seol, S. K., Song, O.-K., Park, J. H., Jang, S. K. (2007). An RNA-Binding Protein, hnRNP A1, and a Scaffold Protein, Septin 6, Facilitate Hepatitis C Virus Replication. J. Virol. 81: 3852-3865 [Abstract] [Full Text]  
  • Song, Y., Friebe, P., Tzima, E., Junemann, C., Bartenschlager, R., Niepmann, M. (2006). The Hepatitis C Virus RNA 3'-Untranslated Region Strongly Enhances Translation Directed by the Internal Ribosome Entry Site. J. Virol. 80: 11579-11588 [Abstract] [Full Text]  
  • Jeang, K.-T., Yedavalli, V. (2006). Role of RNA helicases in HIV-1 replication. Nucleic Acids Res 34: 4198-4205 [Abstract] [Full Text]  
  • Rasnik, I., Myong, S., Ha, T. (2006). Unraveling helicase mechanisms one molecule at a time. Nucleic Acids Res 34: 4225-4231 [Abstract] [Full Text]  
  • Harris, D., Zhang, Z., Chaubey, B., Pandey, V. N. (2006). Identification of Cellular Factors Associated with the 3'-Nontranslated Region of the Hepatitis C Virus Genome. Mol. Cell. Proteomics 5: 1006-1018 [Abstract] [Full Text]  
  • Lin, K., Perni, R. B., Kwong, A. D., Lin, C. (2006). VX-950, a Novel Hepatitis C Virus (HCV) NS3-4A Protease Inhibitor, Exhibits Potent Antiviral Activities in HCV Replicon Cells.. Antimicrob. Agents Chemother. 50: 1813-1822 [Abstract] [Full Text]  
  • van Leeuwen, H. C., Liefhebber, J. M. P., Spaan, W. J. M. (2006). Repair and Polyadenylation of a Naturally Occurring Hepatitis C Virus 3' Nontranslated Region-Shorter Variant in Selectable Replicon Cell Lines. J. Virol. 80: 4336-4343 [Abstract] [Full Text]  
  • Kanda, T., Basu, A., Steele, R., Wakita, T., Ryerse, J. S., Ray, R., Ray, R. B. (2006). Generation of Infectious Hepatitis C Virus in Immortalized Human Hepatocytes. J. Virol. 80: 4633-4639 [Abstract] [Full Text]  
  • Shimakami, T., Honda, M., Kusakawa, T., Murata, T., Shimotohno, K., Kaneko, S., Murakami, S. (2006). Effect of Hepatitis C Virus (HCV) NS5B-Nucleolin Interaction on HCV Replication with HCV Subgenomic Replicon.. J. Virol. 80: 3332-3340 [Abstract] [Full Text]  
  • Yi, M., Tong, X., Skelton, A., Chase, R., Chen, T., Prongay, A., Bogen, S. L., Saksena, A. K., Njoroge, F. G., Veselenak, R. L., Pyles, R. B., Bourne, N., Malcolm, B. A., Lemon, S. M. (2006). Mutations Conferring Resistance to SCH6, a Novel Hepatitis C Virus NS3/4A Protease Inhibitor: REDUCED RNA REPLICATION FITNESS AND PARTIAL RESCUE BY SECOND-SITE MUTATIONS. J. Biol. Chem. 281: 8205-8215 [Abstract] [Full Text]  
  • Perni, R. B., Almquist, S. J., Byrn, R. A., Chandorkar, G., Chaturvedi, P. R., Courtney, L. F., Decker, C. J., Dinehart, K., Gates, C. A., Harbeson, S. L., Heiser, A., Kalkeri, G., Kolaczkowski, E., Lin, K., Luong, Y.-P., Rao, B. G., Taylor, W. P., Thomson, J. A., Tung, R. D., Wei, Y., Kwong, A. D., Lin, C. (2006). Preclinical Profile of VX-950, a Potent, Selective, and Orally Bioavailable Inhibitor of Hepatitis C Virus NS3-4A Serine Protease. Antimicrob. Agents Chemother. 50: 899-909 [Abstract] [Full Text]  
  • CLERTE, C., HALL, K. B. (2006). Characterization of multimeric complexes formed by the human PTB1 protein on RNA. RNA 12: 457-475 [Abstract] [Full Text]  
  • Capone, S., Meola, A., Ercole, B. B., Vitelli, A., Pezzanera, M., Ruggeri, L., Davies, M. E., Tafi, R., Santini, C., Luzzago, A., Fu, T.-M., Bett, A., Colloca, S., Cortese, R., Nicosia, A., Folgori, A. (2006). A Novel Adenovirus Type 6 (Ad6)-Based Hepatitis C Virus Vector That Overcomes Preexisting Anti-Ad5 Immunity and Induces Potent and Broad Cellular Immune Responses in Rhesus Macaques. J. Virol. 80: 1688-1699 [Abstract] [Full Text]  
  • Nelson, H. B., Tang, H. (2006). Effect of Cell Growth on Hepatitis C Virus (HCV) Replication and a Mechanism of Cell Confluence-Based Inhibition of HCV RNA and Protein Expression. J. Virol. 80: 1181-1190 [Abstract] [Full Text]  
  • McCormick, C. J., Brown, D., Griffin, S., Challinor, L., Rowlands, D. J., Harris, M. (2006). A link between translation of the hepatitis C virus polyprotein and polymerase function; possible consequences for hyperphosphorylation of NS5A. J. Gen. Virol. 87: 93-102 [Abstract] [Full Text]  
  • Lam, A. M. I., Frick, D. N. (2006). Hepatitis C Virus Subgenomic Replicon Requires an Active NS3 RNA Helicase. J. Virol. 80: 404-411 [Abstract] [Full Text]  
  • Ivanyi-Nagy, R., Kanevsky, I., Gabus, C., Lavergne, J.-P., Ficheux, D., Penin, F., Fosse, P., Darlix, J.-L. (2006). Analysis of hepatitis C virus RNA dimerization and core-RNA interactions.. Nucleic Acids Res 34: 2618-2633 [Abstract] [Full Text]  
  • Munakata, T., Nakamura, M., Liang, Y., Li, K., Lemon, S. M. (2005). Down-regulation of the retinoblastoma tumor suppressor by the hepatitis C virus NS5B RNA-dependent RNA polymerase. Proc. Natl. Acad. Sci. USA 102: 18159-18164 [Abstract] [Full Text]  
  • Domitrovich, A. M., Felmlee, D. J., Siddiqui, A. (2005). Hepatitis C Virus Nonstructural Proteins Inhibit Apolipoprotein B100 Secretion. J. Biol. Chem. 280: 39802-39808 [Abstract] [Full Text]  
  • Lin, C., Gates, C. A., Rao, B. G., Brennan, D. L., Fulghum, J. R., Luong, Y.-P., Frantz, J. D., Lin, K., Ma, S., Wei, Y.-Y., Perni, R. B., Kwong, A. D. (2005). In Vitro Studies of Cross-resistance Mutations against Two Hepatitis C Virus Serine Protease Inhibitors, VX-950 and BILN 2061. J. Biol. Chem. 280: 36784-36791 [Abstract] [Full Text]  
  • Quinkert, D., Bartenschlager, R., Lohmann, V. (2005). Quantitative Analysis of the Hepatitis C Virus Replication Complex. J. Virol. 79: 13594-13605 [Abstract] [Full Text]  
  • Mo, H., Lu, L., Pilot-Matias, T., Pithawalla, R., Mondal, R., Masse, S., Dekhtyar, T., Ng, T., Koev, G., Stoll, V., Stewart, K. D., Pratt, J., Donner, P., Rockway, T., Maring, C., Molla, A. (2005). Mutations Conferring Resistance to a Hepatitis C Virus (HCV) RNA-Dependent RNA Polymerase Inhibitor Alone or in Combination with an HCV Serine Protease Inhibitor In Vitro. Antimicrob. Agents Chemother. 49: 4305-4314 [Abstract] [Full Text]  
  • Welbourn, S., Green, R., Gamache, I., Dandache, S., Lohmann, V., Bartenschlager, R., Meerovitch, K., Pause, A. (2005). Hepatitis C Virus NS2/3 Processing Is Required for NS3 Stability and Viral RNA Replication. J. Biol. Chem. 280: 29604-29611 [Abstract] [Full Text]  
  • Zhang, C., Cai, Z., Kim, Y.-C., Kumar, R., Yuan, F., Shi, P.-Y., Kao, C., Luo, G. (2005). Stimulation of Hepatitis C Virus (HCV) Nonstructural Protein 3 (NS3) Helicase Activity by the NS3 Protease Domain and by HCV RNA-Dependent RNA Polymerase. J. Virol. 79: 8687-8697 [Abstract] [Full Text]  
  • Chung, V., Carroll, A. R., Gray, N. M., Parry, N. R., Thommes, P. A., Viner, K. C., D'Souza, E. A. (2005). Development of Cell-Based Assays for In Vitro Characterization of Hepatitis C Virus NS3/4A Protease Inhibitors. Antimicrob. Agents Chemother. 49: 1381-1390 [Abstract] [Full Text]  
  • Franck, N., Le Seyec, J., Guguen-Guillouzo, C., Erdtmann, L. (2005). Hepatitis C Virus NS2 Protein Is Phosphorylated by the Protein Kinase CK2 and Targeted for Degradation to the Proteasome. J. Virol. 79: 2700-2708 [Abstract] [Full Text]  
  • Appel, N., Pietschmann, T., Bartenschlager, R. (2005). Mutational Analysis of Hepatitis C Virus Nonstructural Protein 5A: Potential Role of Differential Phosphorylation in RNA Replication and Identification of a Genetically Flexible Domain. J. Virol. 79: 3187-3194 [Abstract] [Full Text]  
  • Dutkiewicz, M., Ciesiolka, J. (2005). Structural characterization of the highly conserved 98-base sequence at the 3' end of HCV RNA genome and the complementary sequence located at the 5' end of the replicative viral strand. Nucleic Acids Res 33: 693-703 [Abstract] [Full Text]  
  • Friebe, P., Boudet, J., Simorre, J.-P., Bartenschlager, R. (2005). Kissing-Loop Interaction in the 3' End of the Hepatitis C Virus Genome Essential for RNA Replication. J. Virol. 79: 380-392 [Abstract] [Full Text]  
  • Lin, K., Kwong, A. D., Lin, C. (2004). Combination of a Hepatitis C Virus NS3-NS4A Protease Inhibitor and Alpha Interferon Synergistically Inhibits Viral RNA Replication and Facilitates Viral RNA Clearance in Replicon Cells. Antimicrob. Agents Chemother. 48: 4784-4792 [Abstract] [Full Text]  
  • Evans, M. J., Rice, C. M., Goff, S. P. (2004). Genetic Interactions between Hepatitis C Virus Replicons. J. Virol. 78: 12085-12089 [Abstract] [Full Text]  
  • Einav, S., Elazar, M., Danieli, T., Glenn, J. S. (2004). A Nucleotide Binding Motif in Hepatitis C Virus (HCV) NS4B Mediates HCV RNA Replication. J. Virol. 78: 11288-11295 [Abstract] [Full Text]  
  • Frick, D. N., Rypma, R. S., Lam, A. M. I., Frenz, C. M. (2004). Electrostatic analysis of the hepatitis C virus NS3 helicase reveals both active and allosteric site locations. Nucleic Acids Res 32: 5519-5528 [Abstract] [Full Text]  
  • Lackner, T., Muller, A., Pankraz, A., Becher, P., Thiel, H.-J., Gorbalenya, A. E., Tautz, N. (2004). Temporal Modulation of an Autoprotease Is Crucial for Replication and Pathogenicity of an RNA Virus. J. Virol. 78: 10765-10775 [Abstract] [Full Text]  
  • Prabhu, R., Khalap, N., Burioni, R., Clementi, M., Garry, R. F., Dash, S. (2004). Inhibition of Hepatitis C Virus Nonstructural Protein, Helicase Activity, and Viral Replication by a Recombinant Human Antibody Clone. Am. J. Pathol. 165: 1163-1173 [Abstract] [Full Text]  
  • Nam, J.-H., Faulk, K., Engle, R. E., Govindarajan, S., St. Claire, M., Bukh, J. (2004). In Vivo Analysis of the 3' Untranslated Region of GB Virus B after In Vitro Mutagenesis of an Infectious cDNA Clone: Persistent Infection in a Transfected Tamarin. J. Virol. 78: 9389-9399 [Abstract] [Full Text]  
  • Lam, A. M. I., Rypma, R. S., Frick, D. N. (2004). Enhanced nucleic acid binding to ATP-bound hepatitis C virus NS3 helicase at low pH activates RNA unwinding. Nucleic Acids Res 32: 4060-4070 [Abstract] [Full Text]  
  • Thibeault, D., Bousquet, C., Gingras, R., Lagace, L., Maurice, R., White, P. W., Lamarre, D. (2004). Sensitivity of NS3 Serine Proteases from Hepatitis C Virus Genotypes 2 and 3 to the Inhibitor BILN 2061. J. Virol. 78: 7352-7359 [Abstract] [Full Text]  
  • Lu, L., Pilot-Matias, T. J., Stewart, K. D., Randolph, J. T., Pithawalla, R., He, W., Huang, P. P., Klein, L. L., Mo, H., Molla, A. (2004). Mutations Conferring Resistance to a Potent Hepatitis C Virus Serine Protease Inhibitor In Vitro. Antimicrob. Agents Chemother. 48: 2260-2266 [Abstract] [Full Text]  
  • Yu, M.-y. W., Bartosch, B., Zhang, P., Guo, Z.-p., Renzi, P. M., Shen, L.-m., Granier, C., Feinstone, S. M., Cosset, F.-L., Purcell, R. H. (2004). Neutralizing antibodies to hepatitis C virus (HCV) in immune globulins derived from anti-HCV-positive plasma. Proc. Natl. Acad. Sci. USA 101: 7705-7710 [Abstract] [Full Text]  
  • Lin, C., Lin, K., Luong, Y.-P., Rao, B. G., Wei, Y.-Y., Brennan, D. L., Fulghum, J. R., Hsiao, H.-M., Ma, S., Maxwell, J. P., Cottrell, K. M., Perni, R. B., Gates, C. A., Kwong, A. D. (2004). In Vitro Resistance Studies of Hepatitis C Virus Serine Protease Inhibitors, VX-950 and BILN 2061: STRUCTURAL ANALYSIS INDICATES DIFFERENT RESISTANCE MECHANISMS. J. Biol. Chem. 279: 17508-17514 [Abstract] [Full Text]  
  • Lee, K. J., Choi, J., Ou, J.-h., Lai, M. M. C. (2004). The C-Terminal Transmembrane Domain of Hepatitis C Virus (HCV) RNA Polymerase Is Essential for HCV Replication In Vivo. J. Virol. 78: 3797-3802 [Abstract] [Full Text]  
  • Shimakami, T., Hijikata, M., Luo, H., Ma, Y. Y., Kaneko, S., Shimotohno, K., Murakami, S. (2004). Effect of Interaction between Hepatitis C Virus NS5A and NS5B on Hepatitis C Virus RNA Replication with the Hepatitis C Virus Replicon. J. Virol. 78: 2738-2748 [Abstract] [Full Text]  
  • Frick, D. N., Rypma, R. S., Lam, A. M. I., Gu, B. (2004). The Nonstructural Protein 3 Protease/Helicase Requires an Intact Protease Domain to Unwind Duplex RNA Efficiently. J. Biol. Chem. 279: 1269-1280 [Abstract] [Full Text]  
  • Tomei, L., Altamura, S., Bartholomew, L., Biroccio, A., Ceccacci, A., Pacini, L., Narjes, F., Gennari, N., Bisbocci, M., Incitti, I., Orsatti, L., Harper, S., Stansfield, I., Rowley, M., De Francesco, R., Migliaccio, G. (2003). Mechanism of Action and Antiviral Activity of Benzimidazole-Based Allosteric Inhibitors of the Hepatitis C Virus RNA-Dependent RNA Polymerase. J. Virol. 77: 13225-13231 [Abstract] [Full Text]  
  • Tardif, K. D., Siddiqui, A. (2003). Cell Surface Expression of Major Histocompatibility Complex Class I Molecules Is Reduced in Hepatitis C Virus Subgenomic Replicon-Expressing Cells. J. Virol. 77: 11644-11650 [Abstract] [Full Text]  
  • Vlot, A. C., Laros, S. M., Bol, J. F. (2003). Coordinate Replication of Alfalfa Mosaic Virus RNAs 1 and 2 Involves cis- and trans-Acting Functions of the Encoded Helicase-Like and Polymerase-Like Domains. J. Virol. 77: 10790-10798 [Abstract] [Full Text]  
  • Kyono, K., Miyashiro, M., Taguchi, I. (2003). Characterization of ATPase Activity of a Hepatitis C Virus NS3 Helicase Domain, and Analysis Involving Mercuric Reagents. J Biochem 134: 505-511 [Abstract] [Full Text]  
  • Sakai, A., Claire, M. St., Faulk, K., Govindarajan, S., Emerson, S. U., Purcell, R. H., Bukh, J. (2003). The p7 polypeptide of hepatitis C virus is critical for infectivity and contains functionally important genotype-specific sequences. Proc. Natl. Acad. Sci. USA 100: 11646-11651 [Abstract] [Full Text]  
  • Leveque, V. J.-P., Johnson, R. B., Parsons, S., Ren, J., Xie, C., Zhang, F., Wang, Q. M. (2003). Identification of a C-Terminal Regulatory Motif in Hepatitis C Virus RNA-Dependent RNA Polymerase: Structural and Biochemical Analysis. J. Virol. 77: 9020-9028 [Abstract] [Full Text]  
  • Love, R. A., Parge, H. E., Yu, X., Hickey, M. J., Diehl, W., Gao, J., Wriggers, H., Ekker, A., Wang, L., Thomson, J. A., Dragovich, P. S., Fuhrman, S. A. (2003). Crystallographic Identification of a Noncompetitive Inhibitor Binding Site on the Hepatitis C Virus NS5B RNA Polymerase Enzyme. J. Virol. 77: 7575-7581 [Abstract] [Full Text]  
  • Imbert, I., Dimitrova, M., Kien, F., Kieny, M. P., Schuster, C. (2003). Hepatitis C virus IRES efficiency is unaffected by the genomic RNA 3'NTR even in the presence of viral structural or non-structural proteins. J. Gen. Virol. 84: 1549-1557 [Abstract] [Full Text]  
  • Pause, A., Kukolj, G., Bailey, M., Brault, M., Do, F., Halmos, T., Lagace, L., Maurice, R., Marquis, M., McKercher, G., Pellerin, C., Pilote, L., Thibeault, D., Lamarre, D. (2003). An NS3 Serine Protease Inhibitor Abrogates Replication of Subgenomic Hepatitis C Virus RNA. J. Biol. Chem. 278: 20374-20380 [Abstract] [Full Text]  
  • Erdtmann, L., Franck, N., Lerat, H., Le Seyec, J., Gilot, D., Cannie, I., Gripon, P., Hibner, U., Guguen-Guillouzo, C. (2003). The Hepatitis C Virus NS2 Protein Is an Inhibitor of CIDE-B-induced Apoptosis. J. Biol. Chem. 278: 18256-18264 [Abstract] [Full Text]  
  • Gu, B., Johnston, V. K., Gutshall, L. L., Nguyen, T. T., Gontarek, R. R., Darcy, M. G., Tedesco, R., Dhanak, D., Duffy, K. J., Kao, C. C., Sarisky, R. T. (2003). Arresting Initiation of Hepatitis C Virus RNA Synthesis Using Heterocyclic Derivatives. J. Biol. Chem. 278: 16602-16607 [Abstract] [Full Text]  
  • Dimitrova, M., Imbert, I., Kieny, M. P., Schuster, C. (2003). Protein-Protein Interactions between Hepatitis C Virus Nonstructural Proteins. J. Virol. 77: 5401-5414 [Abstract] [Full Text]  
  • Nascimbeni, M., Mizukoshi, E., Bosmann, M., Major, M. E., Mihalik, K., Rice, C. M., Feinstone, S. M., Rehermann, B. (2003). Kinetics of CD4+ and CD8+ Memory T-Cell Responses during Hepatitis C Virus Rechallenge of Previously Recovered Chimpanzees. J. Virol. 77: 4781-4793 [Abstract] [Full Text]  
  • Yi, M., Lemon, S. M. (2003). 3' Nontranslated RNA Signals Required for Replication of Hepatitis C Virus RNA. J. Virol. 77: 3557-3568 [Abstract] [Full Text]  
  • Trozzi, C., Bartholomew, L., Ceccacci, A., Biasiol, G., Pacini, L., Altamura, S., Narjes, F., Muraglia, E., Paonessa, G., Koch, U., De Francesco, R., Steinkuhler, C., Migliaccio, G. (2003). In Vitro Selection and Characterization of Hepatitis C Virus Serine Protease Variants Resistant to an Active-Site Peptide Inhibitor. J. Virol. 77: 3669-3679 [Abstract] [Full Text]  
  • YI, M., LEMON, S. M. (2003). Structure-function analysis of the 3' stem-loop of hepatitis C virus genomic RNA and its role in viral RNA replication. RNA 9: 331-345 [Abstract] [Full Text]  
  • Lohmann, V., Hoffmann, S., Herian, U., Penin, F., Bartenschlager, R. (2003). Viral and Cellular Determinants of Hepatitis C Virus RNA Replication in Cell Culture. J. Virol. 77: 3007-3019 [Abstract] [Full Text]  
  • Blight, K. J., McKeating, J. A., Marcotrigiano, J., Rice, C. M. (2003). Efficient Replication of Hepatitis C Virus Genotype 1a RNAs in Cell Culture. J. Virol. 77: 3181-3190 [Abstract] [Full Text]  
  • Dumas, E., Staedel, C., Colombat, M., Reigadas, S., Chabas, S., Astier-Gin, T., Cahour, A., Litvak, S., Ventura, M. (2003). A promoter activity is present in the DNA sequence corresponding to the hepatitis C virus 5' UTR. Nucleic Acids Res 31: 1275-1281 [Abstract] [Full Text]  
  • Piccininni, S., Varaklioti, A., Nardelli, M., Dave, B., Raney, K. D., McCarthy, J. E. G. (2002). Modulation of the Hepatitis C Virus RNA-dependent RNA Polymerase Activity by the Non-Structural (NS) 3 Helicase and the NS4B Membrane Protein. J. Biol. Chem. 277: 45670-45679 [Abstract] [Full Text]  
  • Bukh, J., Pietschmann, T., Lohmann, V., Krieger, N., Faulk, K., Engle, R. E., Govindarajan, S., Shapiro, M., St. Claire, M., Bartenschlager, R. (2002). Mutations that permit efficient replication of hepatitis C virus RNA in Huh-7 cells prevent productive replication in chimpanzees. Proc. Natl. Acad. Sci. USA 99: 14416-14421 [Abstract] [Full Text]  
  • Dhanak, D., Duffy, K. J., Johnston, V. K., Lin-Goerke, J., Darcy, M., Shaw, A. N., Gu, B., Silverman, C., Gates, A. T., Nonnemacher, M. R., Earnshaw, D. L., Casper, D. J., Kaura, A., Baker, A., Greenwood, C., Gutshall, L. L., Maley, D., DelVecchio, A., Macarron, R., Hofmann, G. A., Alnoah, Z., Cheng, H.-Y., Chan, G., Khandekar, S., Keenan, R. M., Sarisky, R. T. (2002). Identification and Biological Characterization of Heterocyclic Inhibitors of the Hepatitis C Virus RNA-dependent RNA Polymerase. J. Biol. Chem. 277: 38322-38327 [Abstract] [Full Text]  
  • Rivas-Estilla, A. M., Svitkin, Y., Lopez Lastra, M., Hatzoglou, M., Sherker, A., Koromilas, A. E. (2002). PKR-Dependent Mechanisms of Gene Expression from a Subgenomic Hepatitis C Virus Clone. J. Virol. 76: 10637-10653 [Abstract] [Full Text]  
  • Smith, R. M., Walton, C. M., Wu, C. H., Wu, G. Y. (2002). Secondary Structure and Hybridization Accessibility of Hepatitis C Virus 3'-Terminal Sequences. J. Virol. 76: 9563-9574 [Abstract] [Full Text]  
  • Levin, M. K., Patel, S. S. (2002). Helicase from Hepatitis C Virus, Energetics of DNA Binding. J. Biol. Chem. 277: 29377-29385 [Abstract] [Full Text]  
  • Kashiwagi, T., Hara, K., Kohara, M., Iwahashi, J., Hamada, N., Honda-Yoshino, H., Toyoda, T. (2002). Promoter/Origin Structure of the Complementary Strand of Hepatitis C Virus Genome. J. Biol. Chem. 277: 28700-28705 [Abstract] [Full Text]  
  • Schuster, C., Isel, C., Imbert, I., Ehresmann, C., Marquet, R., Kieny, M. P. (2002). Secondary Structure of the 3' Terminus of Hepatitis C Virus Minus-Strand RNA. J. Virol. 76: 8058-8068 [Abstract] [Full Text]  
  • Tardif, K. D., Mori, K., Siddiqui, A. (2002). Hepatitis C Virus Subgenomic Replicons Induce Endoplasmic Reticulum Stress Activating an Intracellular Signaling Pathway. J. Virol. 76: 7453-7459 [Abstract] [Full Text]  

This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrowReprints and Permissions
Right arrow Copyright Information
Right arrow Books from ASM Press
Right arrow MicrobeWorld
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Kolykhalov, A. A.
Right arrow Articles by Rice, C. M.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Kolykhalov, A. A.
Right arrow Articles by Rice, C. M.