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Journal of Virology, February 2000, p. 1810-1814, Vol. 74, No. 4
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Proteolytic Processing of the Astrovirus
Capsid
D. M.
Bass* and
Shiqiang
Qiu
Department of Pediatrics, Stanford
University, Stanford, California 94305
Received 16 July 1999/Accepted 22 November 1999
 |
ABSTRACT |
To further characterize the nature of proteolytic processing of the
astrovirus capsid, we infected Caco-2 cells with a high multiplicity of
astrovirus without trypsin in the presence of 5 to 10% fetal calf
serum. These infections were characterized by pulse-chase labeling with
[35S]methionine, electron microscopy, gel electrophoresis
of purified viral particles, and analysis of infectivity of such
particles with and without added trypsin. Pulse-chase experiments
showed that the astrovirus capsid protein was initially translated as an approximately 87-kDa protein. The 87-kDa capsid protein was rapidly
converted intracellularly to a 79-kDa form which was found in smaller
amounts in the cell supernatant. Purification by differential centrifugation yielded particles that appeared quite similar to trypsin-grown astrovirus particles by negatively stained electron microscopy. These particles were antigenically distinct from
trypsin-treated virions as demonstrated by their various reactions with
monoclonal antibodies in a solid-phase immunoassay. The purified
trypsin-free particles were mainly composed of the 79-kDa capsid
protein which was found to have an amino terminus at residue 71 of the
entire open reading frame 2 (ORF2) product. The cleavage site was
identified in a highly conserved region of the astrovirus ORF2 product.
These trypsin-free particles were minimally infectious in cultured
Caco-2 cells but became highly infectious (105-fold
increase) after trypsin but not chymotrypsin treatment. This
trypsin-enhanced infectivity correlated with conversion of the 79-kDa
capsid protein to three smaller peptides of approximately 34, 29, and
26 kDa.
 |
INTRODUCTION |
Astroviruses were first identified
in the stools of children with gastroenteritis and characterized by
electron microscopy (EM) (18). The particles were
approximately 28 nm in diameter, and some had a star-like morphology.
Since the initial observation in humans, similar viruses have been
identified in a variety of other mammalian species. Lee and Kurtz first
demonstrated growth of the virus in tissue culture and showed that
trypsin is necessary for ongoing astrovirus replication
(16). The development of enzyme immunoassays (EIAs)
(11, 12) and reverse transcriptase PCR assays has allowed
larger numbers of samples to be screened with more-sensitive tests
(13, 14, 21). It has become apparent that astroviruses are
an important cause of gastroenteritis in a variety of settings,
including nosocomial infections, daycare outbreaks, and diarrhea in
outpatients (5-10, 19, 20, 24, 26).
The astrovirus genome consists of a single-stranded positive-sense RNA
of approximately 7,200 nucleotides with three open reading frames
(ORFs). The first, ORF1a, encodes a serine 3C type of viral protease
(27). The second, ORF1b, is separated from ORF1a by a frame
shift and encodes a viral RNA polymerase (17). The third,
ORF2, encodes an 87-kDa polypeptide which functions as the capsid
precursor. During infection, a subgenomic RNA that encodes the capsid
precursor is found in abundance in the cell cytoplasm (22,
23).
Mature infectious astrovirus virions contain two to five polypeptides
with masses of approximately 30 kDa. In human serotype 1 and 2 strains,
26- and 29-kDa peptides have been shown to contain neutralizing
epitopes (2, 25). The maturation of the astrovirus capsid
from an 86- to 90-kDa precursor to the smaller capsid proteins is
poorly understood. Studies examining trypsin-treated cultures have
revealed a confusing array of capsid protein intermediates with masses
ranging from 74 to 35 kDa (25). Because of the methodology used, it has been impossible to determine whether any viral or cellular
proteases participated in the processing. Monroe et al. studied
trypsin-free serotype 2 astrovirus infection by EM and found that viral
particles accumulated within infected cells rather than in the
supernatant, as observed in trypsin-treated infections (23).
In those studies, treatment of the trypsin-free material resulted in
the generation of three capsid proteins ranging from 20 to 31 kDa.
In order to better understand the morphogenesis of the astrovirus
capsid, we have undertaken the study and characterization of immature,
noninfectious virions which are the product of trypsin-free astrovirus
infection of Caco-2 cells.
 |
MATERIALS AND METHODS |
Cells and viruses.
Caco-2 cells were obtained from the
American Type Culture Collection. They were grown in RPMI medium
supplemented with penicillin, streptomycin, and 10% fetal bovine serum
(FBS) at 37°C in a 5% CO2 incubator. Astrovirus serotype
1 adapted to tissue culture by Kurtz and Lee (8, 9) was the
kind gift of S. Matsui, Stanford University. Astroviruses were
routinely propagated as previously described in Caco-2 cells in RPMI
medium without fetal bovine serum and in the presence of trypsin (type
IX; Sigma) at 10 µg/ml (2). Virus was purified by
differential centrifugation as previously described (25),
followed by cesium chloride gradient centrifugation (2).
Positive fractions were identified visually and/or by dot blot
immunoassay using 8G4, a previously described group-specific
anti-astrovirus monoclonal antibody (MAb) (2). Viral
infectivity was titrated on 96-well plates of Caco-2 cells as
previously described (2). Briefly, serial dilutions of human astrovirus were added to Caco-2 monolayers for overnight incubation. The following morning, monolayers were washed with phosphate-buffered saline (PBS), fixed with cold methanol, and then immunoperoxidase stained with MAb 8G4.
Immunoaffinity purification of the 79-kDa capsid protein.
Caco-2 monolayers were infected with trypsin-grown serotype 1 astrovirus at a multiplicity of infection of 5 to 10 infectious units/cell for 1 h and then overlaid with RPMI medium containing 5% FBS. The infection was allowed to proceed for 2 days. The
supernatant and cell pellet were separated by low-speed centrifugation,
and the pellet was homogenized in hypotonic buffer (10 mM NaCl, 50 mM
Tris, pH 7.4) containing 1% Nonidet P-40 as well as 1 mM
phenylmethylsulfonyl fluoride and 1% aprotinin. Debris was removed
from the pellet homogenate by low-speed centrifugation, and the two
supernatants were pooled and centrifuged overnight in a Beckman (Palo
Alto, Calif.) SW28 rotor at 12,000 rpm overnight. This pellet was
resuspended in 5 ml of TNE and extracted with an equal volume of
trichlorotriflouroethane. Octyl glucoside was added to the aqueous
portion to a final concentration of 0.5%. This was then pelleted
through a 30% sucrose cushion in a Beckman SW28 rotor at 28,000 rpm
for 2.5 h. The pellet was resuspended in 5 ml of TNE buffer,
extracted again with trichlorotriflouroethane, and then preadsorbed
with protein A-agarose beads. The resulting supernatant was then
adsorbed to protein A-agarose beads which had been cross-linked to MAb
5B7 with dimethylpimelimidate, washed with radioimmunoprecipitation
assay buffer, and eluted by boiling in Laemmli sample buffer. Purified
protein was run on sodium dodecyl sulfate-polyacrylamide gel
electrophoresis (SDS-PAGE), transferred to polyvinylidene difluoride
paper, and sequenced by automated N-terminal Edman degradation on an
Applied Biosystems automated Sequenator.
Pulse-chase experiments.
Caco-2 cells were infected with
astrovirus at a multiplicity of infection of 5 to 10 for 2 h,
washed twice, and then incubated overnight (12 h) in the presence of
10% FBS with no added trypsin. Monolayers were washed several times
with methionine-free medium and pulsed for 30 min with
[35S]methionine at 1,000 µCi/ml. The monolayers were
again washed, and the cells were refed medium containing 10×
methionine. At 0, 2, and 4 h, the supernatants were collected and
the monolayers were harvested in ice-cold lysis buffer containing 2 mM
phenylmethylsulfonyl fluoride, 2% aprotinin, and 5% FBS. After 30 min, the cell lysates were cleared by centrifugation at
10,000 × g for 15 min. Supernatants were
immunoprecipitated as previously described with MAb 5B7 and protein
A-agarose beads and then analyzed by SDS-PAGE and fluorography.
EIA.
Serotype 1 astrovirus was grown in the absence of
trypsin and purified by differential centrifugation as described above. A portion of the virus was then treated with trypsin at 10 µg/ml or
mock treated for 1 h at 37°C. The virus preparations were
diluted identically to 2 µg/ml and used to coat microtiter plates
that were incubated for 3 h at 37°C. The plates were then washed
twice with PBS and blocked overnight with 20% FBS in PBS. Plates were washed twice more with PBS and then exposed to a 1:5,000 dilution of
MAb ascites or immune rabbit serum. Controls included wells precoated
with purified rhesus rotavirus with and without trypsin, as well as
astrovirus-coated wells probed with an irrelevant antibody. Plates were
developed with peroxidase-conjugated anti-mouse immunoglobulin G
(immunoglobulin M for MAb 7C2). TMB substrate from Kirkegaard & Perry
(Gaithersburg, Md.) was used, and the plates were read on a Bio-Rad EIA
reader at 450 nm after the reaction had been stopped with 1 M
phosphoric acid. The reported absorbances were obtained by subtracting
the values obtained with negative-control wells.
 |
RESULTS |
Astrovirus capsid protein is intracellularly postranslationally
processed during trypsin-free astrovirus infection.
In order to
determine whether the capsid precursor underwent any posttranslational
modification within cells prior to extracellular proteolysis by
trypsin, we performed pulse-chase experiments with astrovirus-infected
Caco-2 cells in the absence of trypsin with 5% FBS present as an
inhibitor of the trypsin present in the original inoculum. Both the
cell supernatant and the lysed cells were analyzed by
radioimmunoprecipitation using astrovirus-specific antibodies, SDS-PAGE, and fluorography. The results (Fig.
1) confirm that the initial product of
translation is an approximately 87-kDa protein which is observed mainly
in the cell lysate throughout the experiment. During the subsequent
hours of chase, there is increasing accumulation of an approximately
79-kDa product in both the supernatant and the cellular fraction.
Neither protein was observed in mock-infected cells (data not shown).
The cell lysates contained much more of the 79-kDa product than did the supernatant, but a longer exposure time was used for the supernatant phase of Fig. 1 for better visualization. Continuation of the chase
phase of the experiment to 24 h showed only a slight decrease in
the 87-kDa protein compared to the 4-h time point (data not shown).

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FIG. 1.
Pulse-chase analysis of processing of the serotype 1 astrovirus capsid in the absence of trypsin. Caco-2 cells in 10% FBS
were infected for 12 h with astrovirus, pulsed for 30 min with
[35S]methionine, and then chased with 10× methionine.
Supernatants and cell lysates were harvested at 0, 2, and 4 h
after completion of the pulse and immunoprecipitated with MAb 5B7. The
supernatant portion was exposed to film four times longer than the cell
lysates were. Molecular size markers (in kilodaltons) are indicated.
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|
Purification of trypsin-free viral particles.
Because Monroe
et al. had previously described intracellular viral particles in
trypsin-free astrovirus infections (23), we wished to
examine their protein composition. Therefore, we used our standard
astrovirus purification protocol to purify products of such infections.
In CsCl gradients, the particle density was 1.35 g/ml, slightly higher
than the 1.34 g/ml obtained with standard trypsin-grown astrovirus.
When the resulting material was examined by negatively stained EM, we
observed numerous viral particles visually indistinguishable in size
and morphology from trypsin-grown astrovirus (Fig.
2). When we measured 150 particles in EM
photomicrographs in a blinded fashion, we found that the
non-trypsin-treated particles had an average diameter that was slightly
larger than that of particles treated with trypsin (40.5 versus 39.0 nm; P < 0.01). Analysis of this material by SDS-PAGE
(Fig. 3, lane NT) showed that the
particles consisted mainly of a 79-kDa protein analogous to that
observed during the chase phase of our pulse-chase experiments as shown
in Fig. 1. This 79-kDa band comigrated on SDS-PAGE with material
immunoprecipitated from trypsin-free infection (lane IP).

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FIG. 2.
Human serotype 1 astrovirus particles grown in the
presence (A) or absence (B) of trypsin with negative staining with
phosphotungstic acid. Particles were grown and purified as described in
Materials and Methods.
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FIG. 3.
Protein composition of serotype 1 astrovirus particles
by SDS-PAGE. Virus was purified as described in Materials and Methods.
Lanes: IP, viral protein immunoprecipitated with MAb 5B7 from
trypsin-free astrovirus infection; NT, virus grown in the absence of
trypsin; T, virus grown in the presence of trypsin at 10 µg/ml; NT+T,
virus grown in the absence of trypsin and subsequently treated for 30 min at 37°C with trypsin at 10 µg/ml. Estimated molecular masses of
astrovirus proteins (left) are indicated, as well as molecular size
markers, in kilodaltons.
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|
Activation of trypsin-free particles.
Because earlier studies
had shown that treatment of crude approximately 90-kDa viral protein
from trypsin-free astrovirus-infected cells yielded smaller peptides
consistant with astrovirus capsid proteins (23), we treated
the purified, trypsin-free particles with trypsin and then assayed them
for protein content and infectivity. After 1 h of exposure to
trypsin at 10 µg/ml, the 79-kDa protein was converted to three
smaller proteins with molecular masses of approximately 34, 29, and 26 kDa which comigrated on SDS-PAGE with the proteins derived from
purified trypsin-grown astrovirus (Fig. 3, lanes T and NT+T).
When we compared the infectivity of the 79-kDa particles with that of
the trypsin-treated particles by titration on Caco-2
cells, we observed
a striking 50,000- to 100,000-fold increase
(Fig.
4). A minimal three- to fourfold increase
was observed when
the trypsin-free virus was treated with chymotrypsin.
Chymotrypsin
treatment of trypsin-free astrovirus particles resulted in
a different
pattern of proteins by SDS-PAGE featuring a major band of
approximately
38 kDa (data not shown). Indeed, the scant measurable
infectivity
of the trypsin-free 79-kDa protein (300 foci/ml) might be
accounted
for by residual trypsin-activated virus which was used as
inoculum
for the generation trypsin-free particles. Thus, it is likely
that the minimally infectious astrovirus particles containing
only the
79-kDa protein are the precursors to the infectious virions
which have
three capsid proteins.

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FIG. 4.
Enhancement of astrovirus infectivity by trypsin or
chymotrypsin (chymo) treatment. Purified, trypsin-free astrovirus was
incubated with the indicated concentrations of trypsin or chymotrypsin
(N -p-tosyl-L-lysine chloromethyl
ketone [TLCK] treated; Sigma-Aldrich, St. Louis, Mo.) at 37°C for
30 min prior to titration on Caco-2 cells by immunoperoxidase focus
assay. The experiment was performed three times with three replicate
titrations each time. Shown are mean values from a typical experiment.
Error bars indicate 1 standard deviation.
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|
Antigenic comparison of trypsin-free astrovirus and trypsin-treated
astrovirus.
Although we observed no obvious morphologic
differences between trypsin-treated virus and untreated virus, we
suspected that there would be significant differences in their surface
topology given the huge difference in infectivity observed between the two particle types. Therefore, we devised EIAs employing several previously described MAbs (2) directed against astrovirus
capsid epitopes to compare the two species of viral particle (Fig.
5). All four MAbs recognized both forms
of virus particle, while a control MAb against rotavirus VP5 (2G4)
recognized neither form. Two antibodies (5B7 and 8G4) react
significantly more readily with trypsin-free particles, while the other
two (3B2 and 7C2) react much more strongly with trypsin-treated
virions. Rabbit antiserum prepared to trypsin-grown, purified
astrovirus particles reacts equally well with both species.
Interestingly, 3B2 and 7C2 have previously been shown to react in
immunoprecipitation exclusively with the 29-kDa capsid protein found in
trypsin-treated virus, in contrast to the broader reactivity of 5B7,
which reacts with a variety of precursors, including the 87- and 79-kDa
forms. Thus, we conclude that trypsin cleavage of the 79-kDa protein simultaneously activates viral infectivity while unmasking key epitopes
involved in viral neutralization.

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FIG. 5.
Reactivity of various antibodies with trypsin-treated
(ASTRO +T) and non-trypsin-treated (ASTRO T) astrovirus 1. Plates
were precoated with trypsin-treated or trypsin-free astrovirus or
rhesus rotavirus (ROTA) and then probed with various antibodies as
described in Materials and Methods. Bars indicate the mean
A450 of four replicate wells for each condition.
Error bars indicate 1 standard deviation.
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|
N-terminal sequence of the 79-kDa capsid protein.
Hoping to
gain a better understanding of the genesis the 79-kDa capsid protein,
we immunoaffinity purified the latter and submitted it for N-terminal
amino acid sequencing via automated Edman degradation. The results
(KQGVTGPK) showed that the N terminus of the 79-kDa protein began at
residue 71 of the ORF2 product. The cleaved 70 amino acids account for
a calculated loss of 8,105 kDa. This change in molecular mass accounts
for virtually all of the observed apparent change observed by SDS-PAGE
(Fig. 1) and suggests that the amino-terminal cleavage is the only
major intracellular modification in the ORF2 product.
 |
DISCUSSION |
Although several studies have previously examined proteolytic
processing of the astrovirus ORF2 product, the capsid precursor, ours
is the first to document trypsin-independent cleavage of the initial
87-kDa translation product. Monroe and coworkers studied trypsin-free
human astrovirus infection in LLCMK2 cells and observed only an
approximately 90-kDa product by immunoprecipitation using hyperimmune
rabbit serum (23). It should be noted that a number of
cellular proteins were coprecipitated in their experiments and may have
obscured the 79-kDa protein. Sanchez-Fauquier et al. performed
pulse-chase experiments with immunoprecipitations similar to our
experiments but always included trypsin in the medium (25).
They did observe a prominent 74-kDa band during the chase phase which
is probably equivalent to our 79-kDa band, but the finding was somewhat
obscured by a variety of smaller viral proteins which were
coprecipitated. These smaller proteins were most likely the
intermediates formed by simultaneous trypsin degradation of the 74-kDa
protein. In our experiments, we used MAb 5B7 instead of antiserum and
observed minimal coprecipitation of cellular proteins. Furthermore,
since the experiments were performed in the presence of FBS, as well as
other potent trypsin inhibitors, no trypsin activity was present.
We found that the 87-kDa primary translation product of ORF2 was mainly
intracellular (Fig. 1) but that the 79-kDa form appeared in the cell
lysates and at lower concentrations in the cell supernatants. It is not
surprising that this extracellular form was not observed by
Sanchez-Faquier et al., given that their extracellular medium contained
a high concentration of trypsin (10 µg/ml). It is possible that
Monroe et al. failed to observe the 79-kDa capsid protein in
trypsin-free supernatants due to the rather low level of infection they
were able to achieve (15 to 25% of cells versus our 90 to 100%) and
the fact that their assay for antigen in the supernatant was an EIA
which is probably less sensitive than radioimmunoprecipitation.
We then purified virions from trypsin-free infections and found that
the main protein component was the 79-kDa form of the ORF2 product.
When treated in vitro with trypsin, these particles had a dramatic 4- to 5-log10 rise in infectivity (Fig. 4) which correlated
with conversion of the 79-kDa protein to three proteins of
approximately 34, 29, and 26 kDa (Fig. 3). The increased infectivity is
several orders of magnitude higher than that observed with other
enteric viruses, such as rotavirus and reovirus, which typically increase by 10- to 100-fold after proteolytic activation. We do not
believe that this increase in infectivity is due to disaggregation of
virus particles because we did not observe such aggregation in
negatively stained electron micrographs of purified trypsin-free virus.
Given that the increased infectivity seen in some other enteric viruses
after protease treatment is due to enhanced viral penetration of target
cells (1, 15), it is tempting to speculate that a similar
mechanism is responsible for trypsin activation of astrovirus.
Sanchez-Fauquier et al. have previously shown that the amino termini of
the 26- and 29-kDa capsid proteins of trypsin-grown serotype 2 human
astrovirus are at amino acids 395 and 362, respectively (25). Both of these amino acids follow arginine residues,
lending credence to the notion that they are the result of trypsin
cleavage. More recently, Monroe et al. have reported preliminary
evidence of the same termini in other human astrovirus serotypes
(3). In our laboratory, we have identified residue 395 as
the amino terminus of the 29-kDa capsid protein (data not shown).
Unfortunately, we have been unable to obtain N-terminal sequence data
from the 26- and 34-kDa capsid components, possibly because the N
termini are blocked.
Trypsin treatment also produced a shift in the antigenicity of the
virus, with epitopes recognized by MAbs 3B2 and 7C2 becoming more
reactive while epitopes related to MAbs 5B7 and 8G4 became less
reactive (Fig. 5). MAbs 3B2 and 7C2 are directed against capsid-specific epitopes on the 29-kDa protein and fail to
immunoprecipitate either higher-molecular-weight precursors or the
smaller 26-kDa capsid protein (2). MAb 5B7
immunoprecipitates not only the 26- and 29-kDa capsid components but
also a variety of higher-Mr precursors,
including the 87-kDa primary ORF2 product and the 79-kDa modification
(Fig. 1 and 3).
Our observation of the intracellular modification of the 87-kDa capsid
protein precursor led us to wonder what the nature of this processing
is. The N-terminal sequence which we obtained from the 79-kDa form
suggests that cleavage at amino acid 71 is responsible for the observed
shift in molecular weight. The amino-terminal 415 residues of ORF2 are
remarkably conserved across serotypes (28), and the sequence
surrounding the cleavage site (amino acids 69 to 89) is completely
conserved among the eight complete astrovirus capsid sequences
available. The cleavage site follows an arginine residue and is a
potential trypsin site. Preliminary observations made while expressing
astrovirus ORF2 alone in BHK cells show similar processing of the
initial 87-kDa product to a 79-kDa form (S. Matsui and T. Chu, personal
communication), strongly suggesting that cellular proteases can mediate
this change.
The functional significance of the intracellular capsid protein
processing is not known. It is possible that the modification promotes
capsid formation and/or facilitates the association of viral genomic
RNA with nascent virions. It is noteworthy that we observed no 87-kDa
form of the capsid protein when we purified trypsin-free virions by
differential centrifugation. This observation supports the notion that
the conversion to the 79-kDa form is important for the formation of an
intact capsid. The proposed processing of the capsid is depicted in
Fig. 6.

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FIG. 6.
Schematic model of proposed astrovirus capsid
processing. Astrovirus ORF2 is translated as an 87-kDa protein. Within
the cell, the 70 amino-terminal amino acid residues are removed,
probably by a cellular protease. This may facilitate capsid formation.
Outside the cell, trypsin cleavage at sites which include residue 395 results in the mature, infectious virion consisting of three proteins
of approximately 26, 29, and 34 kDa.
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The fate of the cleaved 8-kDa portion of the ORF2 product is not clear
from our studies. We have not observed the protein in purified virus or
immunoprecipitation experiments using 4 to 20% acrylamide gradient
gels, but that may reflect the fact that this peptide does not react
with any of our MAbs or polyclonal antibodies. If the peptide
noncovalently associates with the nascent viral particles, it may be
eluted by conditions used during our viral purification. Similar-size
capsid components have been reported in some, but not all, descriptions
of purified astrovirus particles, raising the possibility that this
portion could remain associated with the virion.
Further studies are necessary to completely map the main constituents
of the mature trypsin-treated viral capsid within the initial ORF2
product. It is possible that some elements of ORF2 play a role in viral
assembly and are not present in the final capsid structure.
 |
ACKNOWLEDGMENTS |
We thank Suzanne Matsui for viral stocks and helpful discussion.
We also thank Usha Upadhyayula for technical assistance and Nafissa
Ghori for excellent assistance with EM.
This work was supported by Public Health Service grant DK52389 from the
National Institutes of Health.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Pediatrics, Stanford University School of Medicine, Stanford, CA 94305. Phone: (650) 723-5070. Fax: (650) 724-3106. E-mail:
Dorsey.Bass{at}Forsythe.Stanford.edu.
 |
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Journal of Virology, February 2000, p. 1810-1814, Vol. 74, No. 4
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
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