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Journal of Virology, December 2000, p. 11744-11753, Vol. 74, No. 24
0022-538X/00/$04.00+0
Wide Range of Viral Load in Healthy African Green
Monkeys Naturally Infected with Simian Immunodeficiency Virus
Simoy
Goldstein,1
Ilnour
Ourmanov,1
Charles R.
Brown,1
Brigitte E.
Beer,1
William R.
Elkins,2
Ronald
Plishka,1
Alicia
Buckler-White,1 and
Vanessa M.
Hirsch1,*
Laboratory of Molecular
Microbiology1 and Laboratory of
Infectious Disease,2 National Institute of
Allergy and Infectious Diseases, National Institutes of Health,
Rockville, Maryland 20852
Received 3 March 1999/Accepted 21 September 2000
 |
ABSTRACT |
The distribution and levels of simian immunodeficiency virus (SIV)
in tissues and plasma were assessed in naturally infected African green
monkeys (AGM) of the vervet subspecies (Chlorocebus pygerythrus) by limiting-dilution coculture, quantitative PCR for
viral DNA and RNA, and in situ hybridization for SIV expression in
tissues. A wide range of SIV RNA levels in plasma was observed among
these animals (<1,000 to 800,000 copies per ml), and the levels
appeared to be stable over long periods of time. The relative numbers
of SIV-expressing cells in tissues of two monkeys correlated with the
extent of plasma viremia. SIV expression was observed in lymphoid
tissues and was not associated with immunopathology. Virus-expressing
cells were observed in the lamina propria and lymphoid tissue of the
gastrointestinal tract, as well as within alveolar macrophages in the
lung tissue of one AGM. The range of plasma viremia in naturally
infected AGM was greater than that reported in naturally infected sooty
mangabeys. However, the degree of viremia in some AGM was similar to
that observed during progression to AIDS in human
immunodeficiency virus-infected individuals. Therefore,
containment of viremia is an unlikely explanation for the
lack of pathogenicity of SIVagm in its natural host species, AGM.
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INTRODUCTION |
Human immunodeficiency virus type 1 (HIV-1) is a member of a large family of nonhuman primate lentiviruses
which have been designated simian immunodeficiency viruses (SIVs). At
the present time, SIVs from at least seven African monkey species have
been identified and molecularly characterized. The genetic
relationships among five of these SIV strains isolated from sooty
mangabey monkeys (Cercocebus atys; SIVsm), mandrills
(Mandrillus sphinx; SIVmnd), Sykes monkeys
(Cercopithecus albogularis mitis; SIVsyk), African green
monkeys, (AGM; Chlorocebus spp.; SIVagm), and
chimpanzees (Pan troglodytes; SIVcpz) have been reviewed
previously (23, 25, 44). Briefly, SIV isolates segregate
phylogenetically, based upon their species of origin, into at least
five lineages represented by SIVsm, SIVagm, SIVsyk, SIVlhoest
(9, 26), and SIVcpz with a number of additional novel
strains from other primates recently characterized (12, 18).
The SIVagm lineage consists of four distinct subtypes that cluster
depending upon the species of AGM from which they were isolated, i.e.,
grivets (Chlorocebus aethiops; SIVagm/gri [14,
29]), vervets (Chlorocebus pygerythrus;
SIVagm/ver [1, 4, 5, 15, 20, 29]), sabaeus monkeys
(Chlorocebus sabaeus; SIVagm/sab
[1-3, 28]), and tantalus monkeys
(Chlorocebus tantalus; SIVagm/tan [22, 33]).
The lack of virulence of SIV isolates for their particular natural host
species is intruiging (reviewed in references 3 and
21). SIV-infected African monkeys such as sooty
mangabeys infected with SIVsm or AGM infected with SIVagm exhibit
no evidence of immunodeficiency (3, 7, 8, 13, 16, 20, 21, 34, 36,
37, 42). However, experimental infection of Asian species of
monkeys (Macaca sp.) with SIVsm or the highly related SIVmac
strain (6, 11, 31, 36, 45, 48) or SIVagm (20) can induce an AIDS-like syndrome. SIVlhoest isolated from L'Hoest monkeys also appears to induce AIDS in macaques while apparently resulting in asymptomatic infection in its natural host
(26). The comparative study of the pathogenesis of such
viruses in their natural host and a disease-susceptible host such as
macaques thus may shed light on the pathogenesis of AIDS in humans. The
SIV strains which have been the best characterized in terms of
virulence for macaques are SIVsm (6, 21, 31, 48) and the
related SIVmac strains (11, 41, 45).
In the susceptible macaque host, the semi-steady-state level at which
plasma viremia plateaus after the primary phase of infection is an
excellent predictor of the subsequent disease course in SIVsm- and
SIVmac-infected macaques (24, 47). Macaques with persistently high plasma viremia succumb more rapidly to disease than
those with lower levels of plasma viremia. This correlation suggests
that the extent of viral replication is a major determinant of disease
pathogenesis. A similar association has been observed in HIV-1-infected
humans (32).
However, the paradigm that pathogenesis is associated with the extent
of viral replication does not appear to be maintained in some of the
natural models of SIV infection. Recent viral load studies of naturally
infected sooty mangabey monkeys demonstrated active ongoing viral
replication as measured by plasma viral RNA assays (42). As
observed in SIVsm-infected macaques (24) and HIV-infected
humans (38), the degree of plasma viremia was reflected in
the extent of virus expression in lymphoid tissues. Since the viral
load in asymptomatic mangabeys is comparable to that observed in
macaques inoculated experimentally with pathogenic SIV (24, 47), it appears unlikely that strict containment of viremia is a likely explanation for the lack of pathogenicity of SIVsm in its
natural host species.
Similar to the species-specific virulence of SIVsm in sooty mangabeys
and macaques, AGM infected with SIVagm remain asymptomatic (3,
7, 8, 13, 19, 20, 21, 34, 35, 37) whereas experimental
transmission of virus to pigtailed (PT) macaques (Macaca
nemestrina) can result in an AIDS-like syndrome (20). As confirmation that this virus has not changed in pathogenesis by
passage in macaques, experimental infection of SIV-seronegative AGM
with this pathogenic isolate does not result in disease
(20). Quantitative studies of viral loads in naturally
infected AGM revealed that the proviral load in peripheral blood
mononuclear cells (PBMC) and lymph nodes of such animals is similar to
that observed during asymptomatic infection of humans with HIV-1
(8, 19), and viral populations in infected AGM appear to
undergo significant evolution (34). The purpose of the
present study was to characterize the virus load and distribution in
tissues and blood of healthy AGM of the vervet species (C. pygerythrus) that were naturally infected with SIVagm.
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MATERIALS AND METHODS |
Animals and tissues.
Two SIVagm-infected, healthy,
wild-caught AGM of the vervet species (AGM90 and AGM155) that were
imported from Kenya in 1987 (29) were euthanatized, and a
complete necropsy was performed. Fresh lymphoid tissues collected at
autopsy were disrupted by gentle douncing, and the resulting
mononuclear cells were washed and viably frozen in 90% fetal calf
serum-10% dimethyl sulfoxide in liquid nitrogen. Representative
samples were also collected from a variety of gastrointestinal sites
and parenchymal organs, including the kidneys, liver, salivary glands,
and brain. Tissues samples were collected in formalin for routine
histopathology and in situ hybridization (ISH) and aliquots were frozen
on dry ice in phosphate-buffered saline (PBS) and stored in liquid
nitrogen. Sequential plasma samples (collected with EDTA as an
anticoagulant) and formalin-fixed lymph node biopsies were obtained
from an additional AGM (AGM219) from the same cohort. Plasma samples
were assayed for SIV RNA by real-time reverse transcriptase (RT)-PCR,
and lymph node biopsies were assessed for SIV expression by ISH. Plasma samples and PBMC were also obtained from five naturally infected vervets, and paraffin-embedded tissue blocks were obtained from another
six naturally infected vervet monkeys from the Paul Ehrlich Institute,
Langen, Germany. Finally, sequential plasma samples were collected from
two vervets and two sabaeus monkeys inoculated with SIVagm9063
(20). Animals were housed in accordance with the guidelines
of the National Institutes of Health Animal Care and Use Committee.
Tissue culture and cells.
Virus was isolated from viably
frozen, disrupted lymph node mononuclear cells (LNMC) from lymphoid
tissues of AGM155 and AGM90 by cocultivation with CEMss cells. The
minimum number of infected cells was determined by limiting 10-fold
dilution coculture of LNMC with CEMss cells; each dilution was
cocultured in quadruplicate, and a 50% tissue culture-infective dose
(TCID50) was determined based on RT-expressing wells. Virus
was isolated from cryopreserved tissues such as those of the
gastrointestinal tract, brain, lungs, and liver following thawing on
ice by douncing tissues in Hanks balanced saline solution. The
resulting homogenate was centrifuged, and the pelleted material was
used to isolate genomic DNA. The supernatant was then filtered
(0.45-µm-pore-size filter), and the filtrate was used to isolate SIV
by incubation with CEMss cells. These cultures were sequentially
monitored for supernatant RT activity. Plasma samples were evaluated
for the presence of SIV p27gag antigen using a
commercial antigen capture assay (Coulter Corp., Hialeah, Fla.), and
also the infectious titer of SIV within these samples was evaluated by
incubation of limiting 10-fold dilutions with CEMss cells.
To evaluate cell populations in the peripheral blood that harbored SIV,
PBMC were separated by centrifugation through lymphocyte separation
medium (Organon Teknica). The monocyte population was allowed to adhere
to plastic tissue culture wells for 5 days in RPMI 1640 medium
containing 10% fetal calf serum and 10% normal rhesus macaque serum,
washed extensively to remove nonadherent cells, and cocultivated with
CEMss cells. Purification of CD4 and CD8 subsets was performed using
positive selection with CD4 (Leu3A) or CD8 (Leu2), followed by
Dynabeads conjugated with anti-mouse immunoglobulin G. Genomic DNA was
isolated from a portion of these CD4+ or CD8+
cells for PCR analysis, and another portion was cocultivated with CEMss
cells after blasting for 4 days in RPMI 1640 with 10% fetal calf
serum-5 µg of phytohemagglutinin per ml-10% interleukin-2. Cell
cultures were monitored for supernatant RT activity by standard methods.
SIV-specific ISH.
Nonradioactive ISH for SIV expression was
performed as previously described on formalin-fixed, paraffin-embedded
tissues utilizing sense or antisense digoxigenin-labeled
riboprobes that spanned the entire SIVagm9063-2 genome
(20). SIVagm9063-2 is an infectious, pathogenic,
molecularly cloned provirus derived from a virus isolate from a PT
macaque (PT63) inoculated a year previously with SIVagm90 isolated
directly from naturally infected vervet AGM90. Briefly, slides were
heated for 5 min and washed sequentially in xylene, 100% ethanol, 95%
ethanol, and diethylpyrocarbonate-treated water. Slides were then
incubated with 5 mM levamisole-1× SSC (0.15 M NaCl plus 0.015 M
sodium citrate)-25 µg of proteinase K per ml of 10 mM Tris (pH
7.4)-0.2 mM CaCl2 at 37°C, followed by 0.1 M glycine in
PBS, 1× PBS, and 0.1 M triethanolamine-0.25% acetic anhydride.
Prehybridization under a coverslip in a preheated humidity chamber was
performed for 15 min, followed by hybridization with either the sense
or the antisense probe at a final concentration of 2.5 ng/ml overnight
at 52°C. Following hybridization, the sections were washed in 2×
SSC-50% formamide solution at 50°C, followed by a wash in 2×
SSC, and treated with RNase solution. Slides were blocked with a buffer
containing 2% horse serum, 0.3% Tween 20, 150 mM NaCl, and 100 mM
Tris (pH 7.4) for 1 h. Slides were then incubated for 1 h
with a 1:5,000 dilution of sheep antidigoxigenin alkaline phosphatase
conjugate in 2% horse serum, washed twice, and incubated with the
nitroblue tetrazolium-5-bromo-4-chloro-3-indolylphosphate substrate in the dark, at room temperature, overnight. This
technique is as sensitive as radioactive methods (unpublished data).
For example, SIVsm riboprobes are sensitive enough to detect the
initial infected cells following rectal inoculation of macaques with
SIVsmPBj (27).
QC-PCR for viral RNA in plasma.
To quantitate viral RNA
levels in plasma, a PCR assay was developed based upon an internally
controlled quantitative competitive (QC)-PCR-based assay
(40) adapted for SIVagm from vervets. A 270-bp region of
gag was generated by PCR amplification from
pSIVagm9063-2 using primers 2548 and 2549 (see below), which
incorporated BamHI and EcoRI sites to facilitate
cloning. The PCR product was cloned into the BamHI and
EcoRI sites of pGEM-7Zf (Promega, La Jolla, Calif.) to
generate wild-type plasmid pGagWT. A 93-bp deletion was introduced by
inverse PCR with primers gagF and gagR (see below) to generate the
competitive template (pGagCT), where the underlined bases highlight an
introduced EcoRV site used to facilitate religation. Primers
RTgagF and RTgagR for the RT-PCR were designed in a region of
gag that is highly conserved among SIVagm clones from
vervet monkeys (see Fig. 2A). The following primers amplify 277- and
184-bp fragments, respectively, from the wild-type and competitive
templates: 2548-F (5'-gttgaattctaacagggagacaacagcgccacctgg-3') and 2549-R (5'-tacggatccggtggtgggtgtgttacatcccactgg-3'),
gagF-2565 (5'-gttgatatctccttgttgttgcgctgggaa-3') and
gagR-2566 (5'-tacgatatccaagcactctcagaagggtgt-3'), and
RTgagF (5'-ctggtggcagtcaaatttcccagcgcaac-3') and RTgagR
(5'-cagtgggatgtaacacacccaccacc-3').
RT-PCR was employed for quantitation of viral RNA in plasma using a
purified in vitro T7 runoff transcript from pGagCT as
the competitive
template, a GeneAmp RNA PCR Core kit (Perkin-Elmer
AB, Foster City,
Calif.), and 2548-F, RTgagF, and RTgagR as primers.
Plasma samples for
analysis were collected using acid citrate
dextrose as an anticoagulant
and stored in a freezer at

70°C.
Virions were pelleted by
ultracentrifugation, and viral RNA was
isolated using a
QIAmp-Viral RNA kit (Qiagen Inc., Valencia, Calif.).
Fourfold
dilutions of the test RNA were mixed with various known
copy numbers of
the competitive template and subjected to reverse
transcription at
42°C for 30 min. The resulting cDNA was then
amplified (45 cycles of
94°C for 1 min, 55°C for 2 min, and 72°C
for 1 min), and the
products were separated by electrophoresis
on 3% agarose HT gels (ISS
Corp.) containing ethidium bromide
at 0.25 µg/ml. Viral RNA levels
were calculated using the dilution
factor for the sample dilution which
gave a wild-type visual signal
equivalent to that of the competitive
template, normalized to
the volume of plasma extracted, and expressed
as the number of
SIV RNA copies per milliliter of plasma. As controls
for the accuracy
of RNA determinations of the competitive template, the
number
of copies was quantified by measurements of
A260 based on the
extinction coefficient
calculated for the transcript sequence.
The copy number of the standard
was confirmed by RT-PCR of serial
10-fold dilutions with detection of a
percentage of the replicates
predicted to contain one copy. The
efficiencies of amplification
of the competitive and wild-type RNA
templates were similar when
assessed separately in modeling
experiments. Finally, SIVagm155-4
and SIVagm9063-2 virus stocks
were prepared as described above
for plasma samples and subjected to
QC-PCR
analysis.
Semiquantitative PCR assay for viral DNA in tissues and
blood.
The number of viral DNA copies in total cellular DNA
samples extracted from tissues was estimated using a semiquantitative limiting-dilution PCR assay. A 250-bp region of gag was
amplified by nested PCR (60 cycles of 94°C for 1 min, 55°C for 2 min, and 72°C for 1 min with outer primers 1807 and 1808 and nested
inner primers 1809 and 1810 [see below]). Serial 10-fold dilutions of cellular DNA ranging from 50 pg to 500 ng were subjected to PCR amplification. PCR products were separated on a 0.9% agarose gel and transferred to nitrocellulose, and Southern blot
hybridization was performed using a probe synthesized by PCR from
pSIVagm155 cloned DNA using primers 1923 and 1924 (see
below). Assuming the average DNA content of a eukaryotic cell to be 5 pg, these samples were equivalent to 10 (50 pg) to 100,000 (500 ng)
cells. Based upon detection of a PCR signal in a dilution, the minimum
number of cells required to produce a PCR signal was extrapolated. This assay was validated using 10 µg of total cellular DNA extracted from
uninfected CEMss cells to which 14 pg of full-length SIVagm9063-2 plasmid had been added, which is roughly equivalent to infected cells
containing one viral DNA copy per cell. Dilutions of this DNA were
assayed by limiting-dilution PCR analysis of 500 ng to 0.05 pg,
with a specific amplification product observed in samples containing 5 pg of DNA or more (data not shown). The
primer sequences were as follows: 1807, 5'-cctcagagctgcataaaagcagat-3'; 1808, 5'-tcactcaagtccctgttcgggcgc-3'; 1809, 5'-tactaggagaccagcttgagcctg-3'; 1810, 5'-tgctggagtttctctcgcctgggt-3'; 1923, 5'-tgttcgctggttagcctaacc-3'; 1924, 5'-gagagagaacccagtaaggaa-3'; 2013, 5'-tgccactaagagaaataacataca-3'; 2014, 5'-cagtgctgaggtagacgcccccat-3'; 2015, 5'-atttttcgcactttttaaaagaaa-3'; 2016, 5'-actcaagtccctgttcgggcgcca-3'.
Real-time RT-PCR assay.
A real-time RT-PCR assay for levels
of viral RNA in plasma was developed using methodology based on the
Prism 7700 Sequence Detection System (Applied Biosystems, Foster City,
Calif.) that was used previously for SIVsm/mac-specific real-time PCR
(46). The real-time PCR assay required three adjacent areas
with a high degree of nucleotide conservation, and the fragment
amplified by the gag primers derived for QC-PCR was not
sufficiently conserved to allow the derivation of a conserved probe
sequence. Therefore, an alignment of known SIVagm full-length
sequences (SIVagm155-4, SIVagmTYO-1, SIVagm 3, and
SIVagm9063-2) from vervets was used to identify a highly conserved
region within the transmembrane glycoprotein-encoding region of the
envelope (see Fig. 1). The forward and reverse primers used to amplify
a 122-nucleotide fragment and an internal fluorogenic probe primer were
generated using inosine (i) residues at positions that were not
conserved between SIVagm sequences. The sequences were as follows:
AgmF, 5'-GTC CAG TCT CiG CAi TTi CTT G-3'; AgmR, 5'-CGG GCA TTG AGG TTT
TTi AC-3'; probe, 5'-R-CAG iTG TTG AAG CTi ACC ATT TGG G-Q-3' (where R indicates a FAM group and Q indicates a TAMRA group
conjugated through linker arm nucleotide linkage). A
high-performance liquid chromatography-purified probe was obtained from
Applied Biosystems or Perkin-Elmer.
A 1.9-kb fragment (
HindIII/
HincII) of the
envelope of pSIVagm9063-2 was cloned into the pTRI-10 [poly(A)]
plasmid vector,
and sense RNA was transcribed from an
EcoRI-linearized plasmid
using T7 polymerase
(
46). After DNase treatment, the full-length
RNA transcript
was purified using oligo(dT) beads and quantitated
by determining the
A260. The copy number of the standard was
confirmed
by RT-PCR of serial 10-fold dilutions with detection of a
percentage
of the replicates predicted to contain one copy. Four serial
10-fold
dilutions, followed by two 5-fold dilutions, of 10
9
copies of the RNA transcript were used as a standard for the
assay
(1:5,000 to 1:125,000,000 dilutions) to develop a standard
curve that
exhibited minimal interrun variability. Plasma samples
were isolated as
described above and assayed in triplicate. RT
reactions were performed
with 96-well plates, and reaction mixtures
contained identical
concentrations of the following components
in RNase-free water: random
hexamers (2.5 µM; Promega, Madison,
Wis.), 5.0 mM MgCl
2,
1.0 mM deoxynucleoside triphosphates, 5.0
mM dithiothreitol, and
20 U of Superscript
RT.
 |
RESULTS |
In the present study, viral loads were assessed by using a
combination of ISH, semiquantitative virus isolation, and measurement of viral RNA levels in plasma samples from naturally infected AGM with
a focus on monkeys of the vervet species (C. pygerythyrus). We focused our efforts on one subtype of SIVagm because of the tremendous diversity within SIVagm isolates from different AGM species (as much as 30% in conserved genes such as gag and
pol). To gain insight into the tissue distribution and viral
loads in such monkeys, lymphoid tissues from eight naturally infected
vervet monkeys, plasma samples from six naturally infected vervets, and plasma samples from two vervets and two sabaeus monkeys that had been
experimentally inoculated with SIVagm9063 were evaluated. A wide
range of tissues were available from two naturally infected vervets, allowing the evaluation of tissue-associated viral loads and distribution. These two vervets (AGM90 and AGM155) are the sources
of infectious molecular clones SIVagm9063-2 and SIVagm155-4, respectively. Sequential plasma samples from one naturally infected vervet and two experimentally infected vervets provided us the opportunity to evaluate viral-load stability over time.
QC-PCR assay for viral RNA in plasma.
To evaluate viral
RNA levels in the plasma of infected animals, a QC-RT-PCR assay
specific for SIVagm was developed using primers based on a region
of gag conserved among SIVagm155-4, SIVagmTYO-1, SIVagm3, and SIVagm9063-2 (Fig.
1A). The effectiveness of these primers
was evaluated on viral RNAs extracted from culture supernatants of SIV
isolates from AGM90 and AGM155. As shown in Fig.
2, both of these viral genomes were
amplified efficiently. The efficiencies of amplification of the
wild-type and competitive RNA templates were similar. Serial dilutions
of viral RNA samples were amplified with a constant amount of a
competitive template that contained a distinguishing 93-bp deletion. An
equivalence point was achieved for each sample that allowed
semiquantiative evaluation of the number of RNA genomes present in
these two samples. As summarized in Table
1, the viral stocks contained 1.5 × 107 and 4 × 106 copies of viral RNA per
ml, respectively.

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FIG. 1.
Oligonucleotide primers used for quantitative PCR for
viral RNA. (A) Primers used for QC-PCR assay. Shown is an alignment of
portions of the gag gene of SIVagm clones from vervet
monkeys compared with SIVagm9063-2, where identity is shown as a
dot and nucleotide substitutions are indicated. Nucleotide positions
within the genome of SIVagm9063-2 are indicated at the right. The
forward (F) and reverse (R) primers used for the QC-PCR assay are shown
below the sequence alignment. (B) Primers used for real-time PCR assay.
Shown is an alignment of portions of the envelope gene of SIVagm
clones compared with that of SIVagm9063-2, where identity is shown
as a dot and nucleotide substitutions are indicated. The primers used
for real-time PCR analysis are shown below the alignment, with the
letter i indicating insertion of an inosine at a variable amino acid.
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FIG. 2.
Analysis of SIVagm isolates by QC-PCR. PCR
amplifications of reactions containing 100 copies of the
competitive template (CT) and of serial fourfold dilution series of
viral RNAs extracted from SIVagm90- and
SIVagm155-infected-cell culture supernatants are shown. The
plus and minus signs on the top line indicate whether RT was included
in the reaction mixture. Virus was used undiluted (lane 2) or diluted
1:4 (lane 3), 1:16 (lane 4); 1:64 (lane 5), 1:256 (lane 6), 1:1,024
(lane 7), 1:4,096 (lane 8), or 1:16,384 (lane 9).
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TABLE 1.
Quantitation of SIVagm155 and SIVagm90 in culture
supernatants of SIV isolates and plasma of naturally
infected monkeys
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To evaluate whether this represented a valid estimate of the number of
viral particles in the samples, parallel analysis of
particle numbers
by electron microscopy, p27 antigen content determination
(Coulter
Corp.), and TCID
50 measurement was also performed. The
ratio of the p27 antigen level to the number of viral RNA
copies
was similar to that which we have observed for SIVsm isolates
and plasma samples (~4,000 copies of viral RNA per pg of p27).
As
expected, a similar rank order of these various assays was
observed. In
all of the assays used to quantitate virus (antigen,
particles), the
number of viral particles quantitated was always
slightly higher in the
SIVagm155 virus stock. The TCID
50 was approximately
5,000-fold lower than the levels of viral RNA. Thus, we concluded
that
this assay system efficiently detected both SIVagm155 and
SIVagm90 in these viral
isolates.
As shown in the bottom portion of Table
1, we then applied this
assay to heparinized plasma samples collected from AGM90
and AGM155.
Viral RNA in the plasma of AGM155 was below the limit
of detection of
the assay (<1,000 copies per ml). In contrast,
two sequential
plasma samples from AGM90 contained 10,000 and
20,000 viral RNA
copies per ml, respectively. Virus was isolated
from undiluted
plasma from AGM90 but could not be rescued from
AGM155 plasma samples,
consistent with a higher level of plasma
viremia for AGM90. Since these
initial samples contained heparin,
which could inhibit a PCR, these
estimates of viral RNA represented
a minimum estimate. To obtain a more
accurate picture of the viral
load in such monkeys, plasma samples from
eight additional SIVagm-infected
vervets were assayed using a
real-time
assay.
Measurement of viral RNA in plasma using a real-time PCR
assay.
Since the two samples were widely divergent in terms of
viral RNA levels, we obtained fresh plasma samples from six additional naturally infected vervets and two vervets inoculated experimentally with SIVagm9063 (Table 2). Virus was
isolated by coculture of CEMss cells with PBMC of two of these animals
(386 and 5319), and new isolates of SIVagm155 and
SIVagm90 were generated. A real-time RT-PCR assay specific
for the vervet subtype of SIVagm was developed using primers
specific for a highly conserved region of the envelope (Fig. 1B)
which readily amplified SIVagm90, SIVagm155,
SIVagm386, and SIVagm5319. Sequence analysis of the 120-bp
product of the real-time PCR primers demonstrated that the SIVs
infecting these five vervets were relatively well conserved in this
region of the genome (96 to 97% nucleotide identity). A dilution
series of an RNA transcript of the SIVagm9063-2 envelope was used
to develop a standard curve (Fig. 3A)
from which viral RNA levels were extrapolated.
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TABLE 2.
Quantitation of SIVagm in culture supernatants of SIV
isolates and plasma of naturally infected monkeys using
real-time RT-PCR
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FIG. 3.
Analysis of SIVagm RNA levels in plasma of naturally
and experimentally infected AGM using a real-time RT-PCR assay. This
plot of the input control template (in vitro envelope transcript) copy
number versus the threshold cycle demonstrates the assay's precision
and broad dynamic range. The plotted values represent mean values ± 1 standard deviation for triplicate determinations. (B) SIV RNA
levels in plasma through 3 years of chronic infection in a naturally
infected vervet (AGM219). Sequential SIV RNA levels in plasma are also
shown for two vervet monkeys (374 and 649) and two sabaeus monkeys (233 and 234) that were experimentally inoculated with SIVagm9063 in
1994.
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Quantitation was not performed on the plasma samples from AGM90 and
AGM155 due to the confounding presence of heparin. Viral
RNA levels in
plasma samples from six additional naturally infected
AGM ranged from
<1,000 to 800,000 copies (Table
2), consistent
with the range observed
in samples from AGM90 and previously.
The viral RNA levels in plasma
samples from the experimentally
infected AGM were within the range
observed in the naturally infected
vervets, with mean levels of 28,000 and 86,000 copies/ml (Table
2). These moderate levels contrasted with
the high SIV RNA levels
in the plasma of two PT macaques that had been
experimentally
inoculated with SIVagm9063-2. As shown in Fig.
3B,
longitudinal
analysis of plasma samples collected from the two
experimentally
inoculated vervet monkeys (AGM374 and AGM649) during the
period
from January 1997 to January 2000 revealed that the viral RNA
levels in plasma were remarkably stable over time. Similarly,
sequential viral RNA levels in the plasma of the one naturally
infected
vervet for which multiple samples were available were
also stable over
time (Fig.
3). Interestingly, viral RNA levels
in plasma were
consistently lower in two sabaeus monkeys (AGM233
and AGM234) that had
been experimentally inoculated with SIVagm9063-2.
Distribution of virus in naturally infected AGM.
As detailed
in Table 3, virus isolation, PCR and ISH
were used to determine the distribution and loads of SIV in tissues of
AGM90 and AGM155. Virus isolation from a range of tissues was attempted utilizing CEMss to rescue infectious virus. Virus was isolated from all lymphoid tissues (lymph nodes, spleen, and thymus) and samples from the gastrointestinal tract (esophagus, stomach, duodenum, jejunum, ileum, cecum, and colon). Virus was not isolated from other tissues, such as the kidneys, liver, salivary glands, skin,
muscle, or brain, with the exception of the kidneys and liver of AGM90.
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|
TABLE 3.
Detection of infectious virus by virus isolation,
viral DNA by PCR, and viral RNA by ISH in tissues from
naturally infected AGM
|
|
To evaluate the cell types in the blood that harbored SIV, virus
isolations were performed on activated PBMC, monocyte-derived
macrophages, and CD4
+ lymphocytes (selected with CD4
Dynabeads [Dynal]). Virus was
isolated from PBMC of both animals. In
addition, SIVagm was isolated
from the monocyte-derived
macrophage populations of both animals
and from CD4-selected and
CD8-selected cells of AGM90. A minimum
of 10
4 cells was
required for isolation of SIV from PBMC from AGM90,
whereas isolation
of virus from AGM155 required 10
6 cells. The
isolation of virus from CD8
+ lymphocytes is not entirely
unexpected, since the majority of
CD4
+ lymphocytes of AGM
coexpress CD8 (
35).
Analysis of tissues by PCR for viral DNA yielded results that were
generally concordant with virus isolation; 32 of 38 virus
isolation-PCR
pairs were concordant. Discordant pairs were the
AGM90 stomach, which
was positive for virus isolation but negative
for proviral DNA and
AGM155 urinary bladder, ovary, liver, kidney,
and pancreas, for which
proviral DNA was detected but virus was
not isolated. The latter virus
isolations were performed on frozen-tissue
homogenates that could
potentially reduce the sensitivity of virus
isolation.
In order to provide a more accurate quantitation of the virus load in
tissues, limiting-dilution coculture was performed on
viable
single-cell suspensions from various lymphoid tissues,
as summarized in
Table
3. Virus isolation from lymphoid tissues
required a minimum of
10
4 to 10
5 cells, consistent with a viral load
of 10 to 100 infected cells
per 10
6 total lymphocytes. This
estimate of infected cell numbers was
compared with the approximate
number of cells harboring provirus
as evaluated by a semiquantitative
PCR assay for viral DNA in
tissues. Based on reconstruction experiments
using genomic DNA
spiked with full-length pSIVagm155-4 plasmid DNA
to estimate 1
copy per cell, the semiquantitative PCR assay was capable
of detecting
a minimum of 1 to 10 copies. Viral-load estimates based on
the
PCR assay were similar to those obtained for virus isolation,
although in some individual tissues the estimates differed by
10-fold.
For example, PCR analysis estimated 10
3 cells per
10
6 in the mesenteric lymph node tissue of AGM90 harbored
viral DNA,
whereas the estimate based on recovery of infectious virus
was
100 cells per 10
6. This could be due to the relative
sensitivities of the two assays
or the presence of a minor population
of latently infected cells.
Overall, the combined PCR and virus
isolation data suggest that
these naturally infected AGM had moderate
viral burdens and the
general agreement in the estimates of cells
harboring infectious
virus and those containing provirus is consistent
with the lack
of a significant reservoir of latently infected
cells.
Variable SIV expression in tissues revealed by ISH analysis.
We next analyzed expression of SIV in tissues of AGM90 and AGM155. ISH
for SIV expression was performed on a variety of tissues to map the
distribution of infected cells in tissues. As shown in Fig.
4, tissue sections were hybridized with
sense or antisense probes in parallel to confirm the specificity of
hybridization and in all cases hybridizing cells were observed only in
sections incubated with the antisense probe. The expression of viral
RNA correlated well with the presence of viral DNA as detected by PCR
or virus isolation and with the assessment of the relative viral load.
SIV-expressing cells were observed only rarely in lymphoid tissues and
gastrointestinal sections from AGM155 and were not observed in other
tissues (brain, lung, kidney, and liver). In contrast, SIV-expressing
cells were more frequently detected in tissues of AGM90 (Table 3).
SIV-expressing cells were observed in the spleen, the lymph nodes
(axillary, bronchial, inguinal, and mesenteric), the gut-associated
lymphoid tissues, and the lamina propria and submucosa of the
gastrointestinal tract (Fig. 5). SIV
expression was observed in cells within bronchus-associated lymphoid tissues and in alveolar macrophages of the lung tissue of AGM90 (a tissue positive by PCR analysis). As predicted from the
virus load assessment, only occasional cells (zero to two per
high-power field) expressing SIV RNA were observed in tissues of
AGM155. Within lymphoid tissues, these SIV-expressing cells were
generally within the paracortical regions of the lymph node. Riboprobe deposition in germinal centers, as observed in SIVmac and SIVsm infection of macaques, was not observed. Indeed, the lymph
nodes of these infected AGM were quiescent, with no evidence of either
follicular or paracortical hyperplasia.

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FIG. 4.
Specificity of detection of SIV expression by ISH. SIV
expression in the gastrointestinal tract of AGM90 showing the
specificity of hybridization. (A) Section hybridized with the antisense
SIV probe showing an SIV-expressing cell near an intestinal crypt. (B)
Same field as in panel A on a serial section hybridized with the sense
SIV probe demonstrating no specific hybridization.
|
|

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FIG. 5.
Examples of SIV-expressing cells in lymphoid and
nonlymphoid tissues. SIV expression in the gastrointestinal tracts of
naturally infected AGM90 and AGM155 was detected by ISH. Panels: A,
mesenteric lymph node of AGM90; B, spleen of AGM90; C, tonsil of AGM90;
D and E, macrophages within the lung tissue of AGM90; F, ileum of
AGM155; G, stomach of AGM90; H, colon of AGM90.
|
|
Variable expression of SIV in six additional naturally infected
AGM.
To determine whether these two vervets were representative of
the spectrum of viral expression in tissues of naturally infected AGM,
we examined lymph node biopsies from a selection of seven additional
naturally infected AGM (Table 4). One of
these monkeys was the original source for the SIVagm3 molecular
clone (AGM37; reference 5). Some of these animals
had been evaluated previously for viral loads in plasma and PBMC
(8, 19), and these data, which were similar to those
measured in the present study, are summarized in Table 4. Plasma
samples from these vervets were negative for SIV antigen and contained
antibodies that reacted solely with the envelope glycoproteins. Of the
four plasma samples evaluated, only two contained low levels of
infectious virus (2 and 0.2 TCID50/ml for AGM37 and AGM38).
A variety of tissues from these animals were evaluated for SIV
expression by ISH as detailed in Table 4. SIV-expressing cells were
detectable only in the lymph nodes of three of these AGM (Z4, F3, and
AGM37). SIV-expressing cells were infrequent in lymph node biopsies of
two of the animals (Z4 and F3). AGM37 tissues were particularly
interesting, since high virus expression was restricted to peripheral
lymph node biopsies and, to a lesser extent, within the spleen.
Sections of lung, intestine, mesenteric lymph node, and brain tissues
from AGM37 were negative by ISH. Interestingly, virus expression was not observed in lymph node biopsies from AGM219, despite moderate to
high plasma viremia (Table 2 and Fig. 3). Thus, AGM90 and AGM155 appeared to fit within the spectrum of viral expression levels
of this larger subset of SIV-infected AGM. While the majority of
naturally infected AGM had restricted virus expression, higher expression levels were observed in two animals (AGM90 and AGM37).
 |
DISCUSSION |
The lack of immunodeficiency in SIV-infected African monkeys
provides a valuable opportunity to examine the host and viral factors
responsible for the virulence of primate lentiviruses. Many potential
mechanisms have been proposed to explain the lack of disease in African
monkeys that are naturally infected with their own unique SIV
isolates. Some of these mechanisms include reduced in vivo viral
replication due to intrinsic target cell resistance or CD8 suppressor
factors, lack of cytopathology of SIV for CD4+ lymphocytes
of these monkeys, selective infection of macrophages rather than
lymphocytes, immune tolerance, and lack of immune activation as a
consequence of SIV infection. AGM and sooty mangabeys are the only two
monkey species naturally infected with SIV that have been studied to
any extent. Unfortunately, the assays performed to assess viral loads
in naturally infected AGM and sooty mangabeys have not allowed
comparisons of these two animal models. Recent studies of sooty
mangabeys demonstrated high levels of viral RNA in plasma and extensive
expression of SIVsm in lymphoid tissues (42), whereas viral
RNA levels in plasma and distribution of SIV-expressing cells in tissue
have not been reported for naturally infected AGM. Recent studies of
primary infection in AGM experimentally inoculated with a primary
SIVagm isolate revealed extensive primary viremia that was rapidly
and strongly controlled (13).
In the present report, AGM naturally infected with SIVagm were
evaluated for viral expression in tissue and plasma. Viral RNA levels
in the plasma of naturally infected AGM ranged from undetectable to
800,000 copies per ml of plasma, a considerably wider range than that
observed in sooty mangabeys. The viral DNA loads in lymph node
mononuclear cells from AGM (2 to 100 copies per 106 cells)
were also 100-fold lower than the viral DNA loads observed in naturally
infected sooty mangabey monkeys (103 to
104 copies per 106 cells). Suppressed
plasma viremia in two AGM in the present study fell within the range of
plasma viremia observed in long-term nonprogression (LTNP) after SIVsm
or HIV infection (10, 39). The moderate viremia observed in
the other five AGM was comparable to the spectrum of viremia observed
during the chronic stage of primate lentivirus infection (24, 40,
47). This study suggests that the viral load in
SIVagm-infected AGM is generally lower than that observed in
SIVsm-infected sooty mangabeys. In addition, this study suggests that
viral loads may vary widely between individual infected AGM without
apparent adverse pathologic consequences.
In an attempt to understand the basis for the lack of disease in
natural models of SIV infection, it is useful to compare them with
pathogenic infections such as SIVsm or SIVmac infection of macaques and
HIV-1 infection of humans. The most obvious comparison is with LTNP in
SIV and HIV infections. A hallmark of LTNP in SIV-infected macaques and
HIV-infected humans is marked suppression of viral replication to
almost undetectable levels (10, 39). Clearly, SIVsm-infected
sooty mangabeys do not fit this profile and the present study suggests
that ongoing viral replication in many naturally infected AGM is
considerably higher than in HIV-infected human LTNP. Comparative
virologic studies with a common SIVagm isolate will be important to
elucidate the differences in pathogenesis between AGM and macaques.
Most studies compare the virologic characteristics of naturally
infected AGM to the asymptomatic phase of HIV infection in humans
(8, 13, 19). However, many characteristics of the immune
responses in natural SIVagm infection are considerably different
from those observed in asymptomatic HIV infection (10, 39).
Naturally infected AGM frequently lack a Gag-specific antibody response
(3, 37); such reduced Gag-specific antibody responses are
never observed in the asymptomatic phase of HIV infection but are
associated with advanced disease progression and development of AIDS.
In addition, although moderate levels of envelope-specific antibody are
observed, this antibody does not appear to neutralize their own SIV
isolates (37). SIV-infected AGM also maintain normal
lymphoid morphology (8). This differentiates it from the
lymphadenopathy, characterized by pronounced follicular and paracortical lymphoid hyperplasia and trapping of viral RNA complexes on follicular dendritic cells in germinal centers, that is evident even
in asymptomatic HIV infection (38). Finally, CD4 lymphocytes of AGM, whether SIV infected or naive, are highly underrepresented in
the peripheral blood and coexpress the CD8 antigen (35). Less than 10% of the lymphocytes of the AGM in the present study expressed CD4, resulting in absolute CD4 lymphocyte counts of 100 to
200 per µl of blood. Such a CD4 lymphocyte count in an HIV-infected
human would be consistent with AIDS and would likely be associated with
the onset of opportunistic infections. Clearly, neither of these
animals exhibited any evidence of immunodeficiency.
One of the most intriguing findings was the viral-load range in
naturally infected AGM. The range of normal viremia in
SIVagm-infected AGM overlapped the lower range of viremia observed
in pathogenic models of SIV infection, such as SIVsm or SIVmac
infection of macaques (24, 47). The range of plasma
viremia was similar to that observed recently in experimentally
inoculated AGM of the sabaeus species (13). Longitudinal
assessment of SIV RNA in the plasma of five different AGM revealed a
semi-steady-state level that was characteristic for the individual
monkey, similar to that observed in HIV infection of humans and SIV
infection of macaques (24, 32, 47). The lack of AIDS in AGM
suggests that the consequences of persistent viremia are quite
different from those in humans infected with HIV-1 or macaques infected with either SIVagm or SIVsm/mac. Our data suggest that at least some naturally infected AGM appear to strictly contain viral
replication whereas other individuals exhibit persistent viral
replication. There did not appear to be any obvious trivial
explanations for the difference in virus expression between AGM155 and
AGM90. Both were geriatric, and both were coinfected with simian
T-cell lymphotropic virus type 1 (STLV-1). Virus expression in tissues
of AGM90, however, was increased almost uniformly throughout the
lymphoid tissues and gastrointestinal tract relative to that observed
in AGM155. However, comparison of semiquantitative limiting-dilution
coculture and PCR (Table 3) revealed only minor differences, suggesting that the higher viremia in AGM90 may be the result of enhanced viral
expression. The virus distribution in AGM90 was also broadened to
include expression within the lung. Based upon morphology, SIV-expressing cells appeared to be macrophages, suggesting an altered spectrum of cell types infected in AGM90. In addition, pathologic evaluation of the lungs of AGM90 revealed interstitial infiltration of lymphocytes and eosinophils, as well as evidence of
mite debris consistent with active lung mite
(Pneumonyssis sp.) infestation. Since there was no
evidence of lung mite infestation in AGM155, increased expression
of SIV in the lungs of AGM90 suggests a role of this parasitic
infection in enhancing virus replication.
In summary, the present study suggests that suppression of in vivo
viral replication is an unlikely explanation for the lack of virulence
of SIVagm in its natural host. This conclusion is consistent with
that reached in the study of SIVsm infection of sooty mangabeys.
However, the range of plasma viremia observed among naturally infected
AGM was wider than that reported for sooty mangabeys (42).
Despite viral-load differences between these two animal models, it is
unlikely that suppression of viral replication in vivo will explain the
lack of AIDS-like disease in either of these two host species. The
mechanisms responsible for attenuation of disease in AGM are likely to
be multifactorial and complex, including decreased destruction of
CD4+ lymphocytes. Continued comparative studies of
the virologic and immune responses in these two models will be
important to delineate the mechanistic basis for the avirulence of SIV
in natural host species.
 |
ACKNOWLEDGMENTS |
The first two authors contributed equally.
We thank R. Byrum at Bioqual, Inc., for assistance with the
SIV-infected monkeys; R. Elkins for performing necropsies; C. Erb, S. Whitted, and R. Goeken for technical assistance; and S. Norley of the
Paul Ehrlich Institute and A. Schmeel from Chiron-Behring, Marburg,
Germany, for providing samples from naturally infected AGM.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: NIAID Twinbrook
Facility, 12441 Parklawn Dr., Rockville, MD 20852. Phone: (301)
496-2976. Fax: (301) 480-2618. E-mail: vhirsch{at}nih.gov.
 |
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Journal of Virology, December 2000, p. 11744-11753, Vol. 74, No. 24
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