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Journal of Virology, December 2000, p. 11296-11303, Vol. 74, No. 23
Nessel Gene Therapy Center and Departments of
Medicine and Molecular Biology, Massachusetts General Hospital,
Boston, Massachusetts
Received 31 May 2000/Accepted 30 August 2000
We have constructed a recombinant adenovirus gene delivery system
that is capable of undergoing growth phase-dependent site-specific recombination. When propagated in 293 producer cells, the vector retains its linear double-stranded form and can be propagated to high
titer and purified by conventional procedures. Upon introduction into
target cells, the viral chromosome undergoes cyclization to generate an
autonomously replicating circular episome and a detached linear
fragment. The viral enhancer and reporter gene segregate with the
circular episome, which contains no adenovirus open reading frames. The
effect of rearrangement of adenovirus gene expression was assessed by
quantitative reverse transcription-PCR measurement of the abundance of
transcripts encoding the tripartite leader sequence (TPL) of the major
late promoter. Whereas nonrearranging viruses produced approximately
104 TPL transcripts per 106 infecting genomes
in the HepG2 liver cell line, no transcripts were detectable in the
same cells infected with comparable levels of circularizing vector.
Because no helper virus is required to propagate these vectors, the
problems of recombination with and contamination by helper virus are
eliminated. We also present an efficient and reliable method for
generating recombinant adenoviruses.
Adenovirus vectors (AdV) have a
recognized potential for gene delivery, founded on their broad host
range, robust growth in culture, and capacity to infect mitotically
quiescent cells (13, 45). AdV can be propagated in a helper
cell line, 293, a human embryonic kidney cell line transformed by
adenovirus type 5 (14). 293 cells express the viral E1 gene
products (E1a and E1b) that are the master regulatory proteins for
subsequent viral gene expression. E1-deleted viruses can propagate in
293 cells but not in other cells. Although it would be expected that
E1-deleted viruses lack the machinery to express viral genes, several
studies have demonstrated that cellular E1-like components can
stimulate viral gene expression (24, 39, 43). The expression
of these viral genes results in the relatively rapid elimination of
transduced cells in vivo as a result of a cytotoxic T-cell responses
(46-48). Thus, attention has focused on eliminating the
remaining vestiges of viral expression. Viral genes that have been
deleted for this purpose include the gene for E4 proteins (4, 29,
51), DNA-binding protein (9, 12), DNA polymerase
(3), and the preterminal protein (42). The most
aggressive approach has been the creation of helper virus-dependent vectors that lack all viral genes (18, 28, 32, 34, 40). These vectors have high capacity, evoke reduced cellular immune responses, and show prolonged expression in vivo (37).
However to deploy these viruses on the scale required for human
clinical application presents major challenges because a CsCl gradient is needed to remove the helper virus.
We have developed a different approach to the problem of creating a
gene expression unit devoid of vector-derived open reading frames. In
this strategy, the vector is propagated as a linear, helper-independent
virus in the conventional way on 293 cells. Upon introduction into the
host cell, the viral chromosome undergoes a site-specific rearrangement
to form a circular episome expressing the gene of interest. The viral
enhancer is excised as a result of the rearrangement, leaving a deleted
linear DNA without enhancer function.
The adenoviral enhancer and packaging signals are found as a mosaic
structure at the left end of the viral genome and are essential for
viral gene expression and encapsidation of the viral genome (19,
20). In principle, viral gene expression in target cells should
be decreased by disconnecting this sole enhancer element from the
genome. This approach should also allow more sophisticated
rearrangements to be incorporated, in which the linear remnant is
subjected to additional genoclastic remodeling. Like the vector systems
recently described by Berk, Perricaudet, and coworkers, the
rearrangement is carried out by Cre recombinase acting on
loxP sites (31, 44). However the present system does not rely on a helper virus expressing Cre and, perhaps because of
this, is not subject to the unexplained toxicity seen in the two-virus
system (44).
We also introduce here a convenient and effective strategy for
producing recombinant adenoviruses that is based on the use of intron
endonucleases and bacteriophage lambda in vitro packaging. Due to its
simplicity and reliability, this approach has substantial advantages
over traditional methods, which rely on homologous recombination
between plasmids cotransfected into 293 cells, and over various
recently described strategies (7, 18, 27, 35, 36, 38) that
aim to circumvent the rate-limiting in vivo recombination step. In this
report we present a two-cosmid system for generating AdV, based on Adenovirus type 2 (Ad2) DNA was purchased from Sigma.
Restriction enzymes, intron endonucleases I-CeuI and PI-PspI, and
Moloney murine leukemia virus reverse transcriptase (RT) were purchased from New England Biolabs, Stratagene, or Promega. DNA fragments amplified by PCR were confirmed by DNA sequencing. Nucleotide (nt)
positions refer to the wild-type Ad2 sequence in GenBank (J019017).
Two-cosmid system.
The EcoRI-BsaI
fragment that spans the ampicillin resistance gene in pBR322 was
deleted and replaced by a synthetic adapter, and the bacteriophage
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Episomal Segregation of the Adenovirus Enhancer
Sequence by Conditional Genome Rearrangement Abrogates Late Viral
Gene Expression
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
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INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
phage packaging and the use of highly specific intron-encoded
endonucleases, I-CeuI and PI-PspI. Inclusion of intron endonuclease
cleavage sites at the ends of the viral DNA allows the viral genome to
be liberated from its cosmid context, resulting in improved (10- to
100-fold) generation of recombinant viruses compared to a related
cosmid approach (10).
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MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
cos site was inserted between the unique StyI and
BsmI sites. A PCR-amplified Ad2 fragment containing the left-end inverted terminal repeat (ITR) enhancer elements, and the
encapsidation signal (nt 1 to 376) was created and inserted into the
adapter (Fig. 1) to yield the
tetracycline-resistant left-end plasmid pLEP. The right end of Ad2 from
the AflII site to the right end (nt 3527 to 35937) was
assembled into an ampicillin-resistant cosmid vector, pACKrr3, by
multiple steps of PCR amplification and fragment interchange. The
resultant cosmid was termed pREP7. To expand vector capacity, two
deletions were incorporated into the pREP7 cosmid, an E3 gene deletion
(nt 27901 to 30841, 2,840 bp; cosmid pREP8) and a 1.3-kb deletion (nt
34121 to 35469) in the E4 region of the Ad2 region (pREP12). Complete
vector sequences are available from the authors.

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FIG. 1.
Schematic structure of the AdV system. (A) Diagram of
the pLEP cosmid polylinker region and its position relative to the
adenoviral left ITR. The adenovirus enhancer (Enh)/packaging sequence
(
) is boxed. (B) Generation of a single cosmid encoding the AdV
genome by the direct ligation of two smaller plasmids. A gene
expression unit (CMV-GFP) was inserted into the pLEP cosmid at the
polylinker region. pLEP and pREP cosmids were digested with an intron
endonuclease (PI-PspI), ligated, and packaged in vitro to generate
pAd2CMVGFP. This DNA was then digested with another intron endonuclease
(I-CeuI) to expose the ITRs at both ends of the viral genome (L., left;
R., right). Finally, cosmid digestion mixtures were transfected into
293 cells. Plaques generated by recombinant viruses are detected in 7 to 10 days. MCS, multiple cloning site; WT, wild type; TP, terminal
protein.
Preparation of recombinant AdV.
One microgram of
PI-PspI-digested pLEP plasmid was dephosphorylated and ligated to 1 µg of a PI-PspI-cleaved pREP plasmid in a 20-µl reaction for 2 h at room temperature, and 4 µl of the ligated DNA was packaged in a
phage extract (MaxPlax lambda packaging extracts; Epicentre
Technologies). One-tenth of the packaged material was used to transduce
Escherichia coli DH5
or DK1 cells. Transductants
containing pLEP fused to pREP were selected on agar containing
ampicillin (25 µg/ml) and tetracycline (12.5 µg/ml) (Amp/Tet).
Colonies were selected and DNA was isolated (Qiagen). DNA was used
either for restriction analysis or for transfection of 293 cells as
described below.
Cultured cells and primary human hepatocytes. 293 (human embryonic kidney) cells were obtained from Microbix Biosystems (Ontario, Canada). HepG2 (human hepatocellular carcinoma), HeLa (human cervical epitheloid carcinoma), A-431 (human epidermoid carcinoma), and HT29 (human colon adenocarcinoma) cells were all obtained from the American Type Culture Collection. All cells were cultured in complete Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% fetal bovine serum (FBS), 2 mM glutamine, and penicillin-streptomycin (Gibco-BRL) and maintained at 37°C and 5% CO2 atmosphere in an incubator. Primary human hepatocytes, generously provided by Albert Edge (Diacrin, Inc., Charlestown, Mass.), were isolated and cultured as described (15).
Generation of AdV by transfecting linearized cosmid DNA. 293 cells were cultured in 10-cm dishes in DMEM-FBS. Cells were grown to ~50% confluence on the day of transfection. Ten micrograms of cosmid DNA was digested with I-CeuI in a volume of 50 µl. The reaction mixture was transfected into 293 cells by calcium phosphate precipitation (13) without purification. After transfection, cells were cultured and examined daily for the appearance of cytopathic effects. Virus propagation and purification, plaque assay, and viral DNA isolation were performed by established protocols (13).
To compare the efficiency of AdV generation by homologous recombination, 20 µg of pREP7 was cotransfected into 293 cells with 10 µg of a plasmid encoding the left end of the adenoviral genome and a green fluorescent protein (GFP) reporter gene (pLITREF1
GFP). pLITREF1
GFP contains the Ad2 left end (nt 1 to 376), an EF1
promoter-GFP expression unit, and Ad2 sequence (from 3525 to 8120) that
overlaps the same sequence in pREP7. This overlap fragment served as
the region for homologous recombination. Each cotransfection was
performed in duplicate.
Liver-specific promoter. Human hepatic control regions 1 and 2 (HCR1 and -2) of the ApoE/C gene locus (2, 8) were amplified by PCR using 293 cell genomic DNA as the template. The following primers were used to amplify both HCR1 and HCR2 fragments: HCRtop (5'GCGGAATTCGGCTTGGTGACTTAGAGAACAGAG3') and HCRbot (5'GCGGGATCCTTGAACCCGGACCCTCTCACACTA3'). The amplified PCR fragments (~0.39 kb) were cloned into pUC19. The HCR1 and HCR2 sequences were confirmed by dideoxy DNA sequencing. The two fragments were assembled in a head-to-tail orientation, fused with a synthetic basal TATA element (B. Seed, unpublished), and cloned in a parental pLEP vector containing a GFP reporter gene. The resultant plasmid was named pLEPHCR12GFP.
Self-resolving AdV.
The self-resolving AdV was generated
using the two-cosmid system. A plasmid, pAd2237 (Eunchung Park,
personal communication), containing loxP sites, a GFP
reporter gene (16), EBNA-1/OriP, and sequences encoding Cre
recombinase was used to incorporate these elements into the pLEP
plasmid to yield pLEP1BHCRGFP. To generate the self-resolving AdV, 1 µg of pLEP1BHCRGFP DNA and 1 µg of pREP8 (
E1
E3) were digested
with PI-PspI, ligated, packaged, and assembled into one cosmid named
pAdVEBV as described above.
Assessment of GFP expression and titering. GFP expression was assessed by fluorescence microscopy (Olympus IX70) or microtiter plate reader (PerSeptive Biosystem CytoFluor II). For the latter, 5 × 104 293 cells were seeded into each well of a 96-well plate. The cells were infected with serially diluted virus stock and cultured for 48 h, and GFP intensity was measured. Titers were estimated by interpolation into the linear region of a standard curve prepared from virus of known (plaque-derived) titer. All titers were determined in triplicate.
Virus infection, DNA, RNA isolation, and blot analysis. HepG2 and HeLa cells were seeded in 35-mm dishes and cultured to approximately 80% confluence in DMEM-FBS. Cells were infected with the desired multiplicity of virus in a volume of 1 ml at 37°C for 2 h. At the end of the incubation, cells were washed with phosphate-buffered saline (PBS) twice and cultured in 2 ml of medium. Cells were collected in parallel at desired points for low-molecular-weight DNA and RNA extraction. Low-molecular-weight DNA was extracted from the infected cells as described (22), and total RNA was prepared using RNAzol solution (Tel-Test, Inc.).
For Southern blot analysis, 5 µg of DNA was digested with BglII, fractionated on a 1% agarose gel, and subjected to blot analysis using a labeled EBNA-1 gene fragment as the probe.RT-PCR, PCR, and quantitative PCR. Four micrograms of total RNA was reverse transcribed into cDNA using Moloney murine leukemia virus RT by a standard protocol (Promega). The cDNA from each sample (1 µl) was used in subsequent PCRs. PCR primers were designed to amplify the tripartite leader sequence of the adenovirus late genes: TPL1 (5' ACT CTC TTC CGC ATC GCT GT 3') and TPL2 (5' CTT GCG ACT GTG ACT GGT TAG 3'). For detection of the AdV genome in the Hirt DNA samples, 1 µg of DNA was employed in the PCR amplification using the following primers, which are specific for the adenovirus DNA in the fiber gene: Fiber1 (5' CCG CAC CCA CTA TCT TCA TA 3') and Fiber2 (5' GGT GTC CAA AGG TTC GGA GA 3'). PCRs were performed as 95°C for 30 s, 54°C for 30 s, and 72°C for 30 s for 30 cycles. All amplified products were analyzed on a 2% agarose gel.
For quantitative PCR, a molecular beacon-based universal amplification and detection system was used (Intergen). A common leading sequence (Z sequence; 5' ACT GAA CCT GAC CGT ACA 3') was added to the TPL1 and Fiber1 primers. The TPL2 and Fiber2 primers, described above, were used in the quantitative PCRs. cDNA (1 µl) and 1 µg of Hirt DNA from each sample were used in the assay. The PCRs were carried out in a 96-well spectrofluorometric thermal cycler (Applied Biosystems Prism 7700). The number of template molecules in the PCR was calculated from the standard curve using linearized plasmid as the templates.| |
RESULTS |
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Development of a two-cosmid system for efficient construction of recombinant AdV. To simplify and facilitate the generation of recombinant AdV, we established a system to assemble the desired AdV genome in a single plasmid by ligation (Fig. 1). The system consists of two component vectors, a left-end plasmid, pLEP, and a right-end plasmid, pREP. The left-end adenovirus sequences (nt 1 to 376) in pLEP include the viral inverted terminal repeat, the cis-acting packaging sequences, and the viral enhancer. The adenovirus sequences are followed by the gene expression unit intended for delivery and an intron endonuclease (PI-PspI) cleavage site. The right-end plasmid contains a PI-PspI site followed by the Ad2 genome from the end of the E1 locus rightward (nt 3527 to 35937).
pLEP is a small tractable vector for cloning, whereas pREP is much larger and contains less frequently manipulated genes. Both pLEP and pREP contain a bacteriophage
cos site, oriented to
generate a single cosmid of appropriate length for in vitro packaging
following ligation of the two plasmids at the PI-PspI cleavage site.
pLEP is tetracycline resistant (Tetr), and pREP is
ampicillin resistant (Ampr), allowing the recombinants to
be selectively isolated by coselection for both markers. In the
resulting assembled cosmid, the adenoviral sequences are closely
flanked by cleavage sites for the intron endonuclease I-CeuI. Digestion
with I-CeuI liberates the entire recombinant AdV genome from the parent
cosmid (Fig. 1).
Three classes of pREP have been constructed to allow the preparation of
AdV bearing E1 (pREP7), E1 and E3 (pREP8), or E1, E3, and E4 (pREP12)
deletions. pREP7 contains nt 3527 to 35937 of the Ad2 genome; pREP8
carries an additional deletion in the E3 region (
nt 27901 to
30841). pREP12 has deleted open reading frames 1 to 4 of the E4 region
(
nt 34121 to 35469, 1,348 bp). AdV generated with these cosmids
should be able to accommodate inserts of 5, 8, and 10 kb, respectively.
An example of the construction of an AdV carrying a cytomegalovirus
major immediate-early promoter-GFP expression unit (CMV-GFP) is
outlined in Fig. 1. pLEPCMVGFP (Tetr) was digested with
PI-PspI and ligated to pREP7 (
E1, Ampr) digested with
the same enzyme. The ligation mixture was packaged with
phage
extracts, and a fraction of the packaged phage was used to infect a
recombination-deficient E. coli host, with selection for the
assembled plasmid on Amp/Tet plates. Figure
2A shows typical results for the
BglII digestion pattern of a pLEP3CMVGFP/pREP7 hybrid
cosmid, pAd2-7CMVGFP. Because of the size minimum (~40 kbp) for
phage in vitro packaging and the double antibiotic selection, most
of the colonies growing on Amp/Tet plates are the desired hybrid
cosmids, and undesired rearrangements are rarely seen. In the present
example, all four pAd2-7CMVGFP clones exhibited the digestion pattern
predicted from the inferred sequence. The entire recombinant AdV genome
was then released from the cosmid by I-CeuI digestion (Fig. 2B). I-CeuI
digestion leaves 10 nt to the left of the left ITR and 8 nt to the
right of the right ITR. Short flanking sequences have been reported to
be eliminated during replication of recombinant viruses after
transfecting the DNA into 293 cells (17).
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GFP and 20 µg of pREP7 were cotransfected into 293 cells. Initial plaques took longer to
appear (14 days posttransfection) and were less abundant (0 to 3 plaques per plate).
Data in the literature suggest that exposed ITR ends favor efficient
virus production (17). To assess the importance of this
effect, we constructed an AdV cosmid, pIAdEF1
GFPB, in which the AdV
ITRs were flanked with a different restriction site at each end.
pIAdEF1
GFPB DNA was digested with BsaBI to expose the right ITR, I-CeuI to expose the left ITR, or both together to expose
both ends. Digested cosmid DNA samples were transfected into 293 cells,
and plaques were allowed to develop. Ten days after transfection, the
viruses were harvested, and viral titers were determined. The average
titer for the viral stocks (Fig. 3) was
1.3 × 104 PFU/ml from transfection with undigested
DNA; 2.4 × 105 PFU/ml from
BsaBI-linearized DNA (free right ITR); 1.1 × 105 PFU/ml from I-CeuI-linearized DNA (free left ITR); and
2.7 × 106 PFU/ml for the BsaBI/I-CeuI
doubly digested DNA (both ITRs free). Thus, liberation of each end
results in an approximately 10-fold increase in the efficiency of
generating virus (Fig. 3).
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Construction of an AdV capable of self-rearrangement. One approach to attenuating adenoviral gene expression and improving transgene persistence is the creation of viruses capable of undergoing internal, self-directed rearrangement upon delivery to the target tissue. In principle, this objective can be achieved through the regulated expression of site-specific recombinases in vectors that contain the cis-acting target of recombinase action. To allow such vectors to be created, the recombinase activity must be suppressed during propagation in the packaging cell line. We have explored a number of strategies to achieve this end; one of the more effective to date has been the use of a lineage-specific promoter to control recombinase expression.
An example of this is shown in Fig. 4. The expression of Cre recombinase is controlled by a liver-specific promoter. In 293 cells, this promoter is silent, allowing the viral chromosome to be propagated with minimal rearrangement. Any rearranged viruses that are formed lack packaging signals and so disappear from the pool of propagating vectors. In liver cells, the Cre recombinase is induced by the action of the tissue-specific promoter. The resulting Cre-induced recombination excises a circular episome and redirects the transcriptional output of the liver-specific promoter so that it directs the synthesis of the transgene of interest. The remaining linear fragment consists of an adenoviral genome lacking the enhancer and packaging signals and a Cre expression unit devoid of promoter sequences.
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gene. After cyclization, the HCR12 promoter
lies upstream of the transgene (in this case, GFP), and the distal
segment of the intron (beyond the loxP site) contains the
adenoviral enhancer. To facilitate manipulation of the plasmids in
E. coli, the human immunoglobulin G1 (IgG1) hinge-CH2 intron (118 bp) was inserted in the Cre coding sequence at nt 237, suppressing Cre expression in bacteria. The circularized episome contains the
latent origin of replication (OriP) and trans-acting DNA
replication protein (EBNA-1) of Epstein-Barr virus (EBV) and hence is
capable of autonomous replication in synchrony with the host mitotic
cycle (50).
Using the system described above, the pLEP plasmid containing the
self-resolving components, pLEP1BHCR12, was ligated with pREP8
(
E1
E3) to create pAdVHCRGFP/EBV. The latter was digested with
I-CeuI and transfected into 293 cells. Appearance of plaques from
AdVHCRGFP/EBV was retarded (by 8 days) compared to nonrearranging viruses, perhaps as a result of basal expression of the liver-specific promoter in 293 cells. However, high-titered viral stocks of
1012 nominal (absorbance-determined) particles/ml could be achieved.
Rearrangement in target and nontarget cells.
To test excision
efficiency, HepG2 (hepatocellular carcinoma) and HeLa (cervical
carcinoma) cells were infected with virus at a multiplicity of
infection (MOI) of 1,000 nominal particles/cell. This titer corresponds
to approximately 10 PFU per cell. Cells were examined for GFP
expression before extraction of DNA for analysis of chromosomal
rearrangement. Hirt DNA (5 µg) was digested with BglII and
analyzed by DNA blot techniques (Fig. 5).
The BglII fragment from the noncircularized AdV is 3,162 bp,
generated from the 5' end of the AdV to the first BglII site
in the AdV. The circularized fragment, created from the two
loxP sites, has a size of 4,915 bp (Fig. 5A). Densitometry
revealed that at 72 h postinfection, 95% or more of the input
genomes had undergone circularization in HepG2 cells. In contrast, low
but detectable levels of circularized fragment could be visualized in
HeLa cells infected at the same time and at the same MOI used for the
HepG2 cells (Fig. 5B).
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Diminished viral gene expression in rearranged AdV.
After
excision, the adenovirus major enhancer/packaging signal segregates
with the episomal DNA, yielding a linear fragment containing the
remainder of the AdV genome without this important cis
element (Fig. 4). To assess the impact of enhancer deletion, quantitative RT-PCR measurement of late viral gene expression was
performed. As most late adenoviral gene transcripts have a common
~200-bp tripartite leader (TPL) sequence (1), the TPL sequence was chosen as a marker of viral gene expression. HepG2 cells
were infected with the first-generation vectors Ad2CMVGFP and Ad2HCRGFP
or the self-resolving vector Ad2HCRGFP/EBV using increasing MOIs. Total
cellular RNA and low-molecular-weight DNA were isolated in parallel.
RT-PCR was performed to quantitate the amount of RNA encoding the TPL
in the cDNA samples. PCR amplification of a 201-bp fiber gene fragment
from the AdV genome was used to detect the amount of viral genome in
the DNA samples. A representative result of three experiments is shown
in Fig. 7A. TPL sequences were detected,
72 h postinfection, with either 100 or 1,000 viruses infected per
cell using both the first-generation adenoviruses (upper panel). In
contrast, no TPL signal was detected in the self-resolving
Ad2HCRGFP/EBV-infected cells, even at an MOI of 100,000/cell. PCR
amplification of the AdV fiber gene revealed comparable levels of AdV
genomic DNA in cells infected at comparable MOIs (Fig. 7A, lower
panel). The cDNA samples in which the TPL signals were detected were
further analyzed by real-time fluorescence PCR. The corresponding
genomic DNA samples were also analyzed to determine the number of AdV
genomes present in each sample. The results are summarized in Fig. 7B.
Approximately 104 TPL per 106 AdV genomes were
detected in the Ad2HCRGFP-infected cells, but no detectable TPL was
found in the self-resolving Ad2HCRGFP/EBV-infected cells. These results
suggest that adenoviral gene expression is dramatically reduced by the
separation of the viral enhancer sequences occasioned by the
rearrangement of the self-resolving vector.
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DISCUSSION |
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Viral gene delivery vehicles are attractive vectors for human gene therapy. They transduce foreign genes efficiently and deliver large amounts of genetic material without incurring the high mutation rate that naked DNA undergoes upon transfection (5, 6, 30, 41). Large-scale production of recombinant viruses appears feasible, and clinically acceptable formulations could be deployed therapeutically without investment in a substantial infrastructure for local production and use.
Evading the genetically honed ability of the immune system to recognize and destroy viruses and virus-infected cells poses a substantial challenge. Both the humoral and cellular arms of the immune system participate in viral rejection, the humoral arm through antibody recognition and neutralization of the viral particle (11, 48), and the cellular arm through recognition of intracellular peptides either synthesized de novo by viral genes or borne into the cell during infection (25, 48). This paper reports the development of a vector designed to enhance the persistence of virally delivered genes and evade the cellular immune response by severing the connection between the sole adenoviral enhancer and the sequences encoding potentially antigenic viral proteins. Our data indicate that segregation of the enhancer from the multiple adenoviral genes that utilize the common TPL sequence results in a dramatic reduction in viral gene expression.
Previous studies have demonstrated that excision of the enhancer element could affect late gene transcription either directly (21), by diminishing the expression of other early gene products (19, 20, 33), or through a combination of these factors. Conversely, early viral genes can be upregulated by insertion of the adenovirus enhancer element, even in the absence of E1 function (23). Although the relative potency of the different possible contributions to diminished expression is not known, the magnitude of the observed effect is substantial and supports the utility of regulated rearrangement as a strategy for the creation of scaleable AdV for clinical uses. Because of the intermingling of the adenovirus enhancer and packaging sequences, it has been difficult to assess enhancer function by generating an enhancerless virus without compromising viral growth or viability (20). The self-resolving AdV system provides a tool to analyze the roles of the enhancer in viral gene regulation and virus growth.
The circularization of the vector via the action of Cre recombinase has the additional benefit of placing the therapeutic gene on a self-replicating episome. Vector circularization occurs in a tissue-targeted manner, in this case as a result of the activation of a synthetic liver-specific promoter upstream of Cre. Once circularized, the EBV replicon in the episome confers improved persistence on the therapeutic gene, as detected by reporter gene expression and direct assay for the presence of vector DNA sequences (26, 31, 49, 50).
The self-resolving adenovirus/EBV vector used in the present study differs from two previously reported adenovirus/EBV hybrid vectors (31, 44), both by removal of the enhancer and by the method by which Cre recombinase is delivered to the host cell to induce vector rearrangement. In these Cre helper virus-dependent systems, coinfection with an AdV expressing Cre recombinase is required to initiate the cyclization process. The present system places the Cre recombinase and loxP recombination sites on a single vector. Because manipulation of plasmids containing both Cre and loxP sites in this study was occasionally frustrated by the expression of low levels of Cre in E. coli, we introduced an intron into the Cre cDNA. Constructs bearing the intron were easily manipulated in E. coli and gave robust expression in mammalian cells. The use of hepatic locus control elements from the apoE/C gene region allows adequate suppression of expression in 293 cells while permitting recombination and subsequent gene expression in the target tissue. This approach eliminates the requirement for a helper virus, thus avoiding two potential limitations of that system. First, the continuous expression of Cre recombinase may lead to toxicity in host cells, either as a direct consequence of the protein's activity or via its immunogenicity. Second, the Cre helper virus may itself produce antigenic viral proteins that contribute to the immunologic elimination of infected host cells. In contrast, the self-resolving adenovirus/EBV vector system provides no alternative source of viral proteins, and Cre expression is terminated upon rearrangement.
The synthetic liver-specific promoter used in this work provided a means to control Cre recombinase expression during propagation of the vector in 293 cells and allowed us to test the consequences of abstracting the enhancer from the linear vector DNA upon delivery of the DNA to the target cells. However, promoter activity was not completely extinguished in some nonhepatic cells, as revealed by cyclization of the input DNA in HeLa cells. Despite this, expression of the transduced gene was minimal in HeLa cells compared to that seen in HepG2 cells or primary hepatocytes. Future efforts will be directed at creating more efficient molecular switches to improve control of circularization and gene expression.
We have also reported here a convenient general system for creating
recombinant adenoviruses, which may increase their attractiveness as
gene transduction tools for basic research. The system employs two
conventional plasmid vectors and a
phage packaging step. The entire
recombinant AdV genome is assembled into a single cosmid that is easily
amplified in E. coli. A similar approach using a
three-plasmid ligation system (10) appears to be less
effective, probably due to the inefficiency of initiating viral
replication from DNA embedded within a larger plasmid structure. The
use of intron endonuclease recognition sequences flanking the ITRs
enhances virus production while simplifying insertion of therapeutic
gene sequences into the pLEP shuttle plasmid. The convenience of this vector system has facilitated the construction of over 200 recombinant viruses to date.
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ACKNOWLEDGMENTS |
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We thank Luojing Chen and Eun Chung Park for provision of several plasmids used in this work and an anonymous reviewer for helpful suggestions. We are also grateful to Albert Edge and Eric Johnson of Diacrin Inc. for providing the human primary hepatocytes.
The work was partially supported by NIH grants HL53694 and HL45098 and funds provided by DARPA. X.W. was the recipient of individual NRSA fellowship F32 AI10059.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Molecular Biology, Wellman 9, Massachusetts General Hospital, Boston, MA 02114. Phone: (617) 726-5975. Fax: (617) 726-5962. E-mail: seed{at}molbio.mgh.harvard.edu.
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