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Journal of Virology, October 2000, p. 9144-9151, Vol. 74, No. 19
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Putative Immunodominant Human Immunodeficiency Virus-Specific
CD8+ T-Cell Responses Cannot Be Predicted by Major
Histocompatibility Complex Class I Haplotype
Michael R.
Betts,1
Joseph P.
Casazza,1
Brent A.
Patterson,1
Shar
Waldrop,2
Wendy
Trigona,3
Tong-Ming
Fu,3
Florian
Kern,4
Louis J.
Picker,2 and
Richard
A.
Koup1,*
Department of Internal Medicine, Division of
Infectious Diseases, The University of Texas Southwestern Medical
Center, Dallas, Texas 753901; Vaccine
and Gene Therapy Institute, Oregon Health Sciences University,
Portland, Oregon 97201-30982; Merck
Research Laboratories, West Point, Pennsylvania
194863; and Institute for Medical
Immunology, Charité, Humboldt Universität zu Berlin, 10098 Berlin, Germany4
Received 25 April 2000/Accepted 26 June 2000
 |
ABSTRACT |
Recent studies of human immunodeficiency virus (HIV)-specific
CD8+ T cells have focused on responses to single, usually
HLA-A2-restricted epitopes as surrogate measures of the overall
response to HIV. However, the assumption that a response to one epitope
is representative of the total response is unconfirmed. Here we assess
epitope immunodominance and HIV-specific CD8+ T-cell
response complexity using cytokine flow cytometry to examine CD8+ T-cell responses in 11 HLA-A2+
HIV+ individuals. Initial studies demonstrated that only 4 of 11 patients recognized the putative immunodominant HLA-A2-restricted
p17 epitope SLYNTVATL, suggesting that the remaining subjects might
lack significant HIV-specific CD8+ T-cell responses.
However, five of six SLYNTVATL nonresponders recognized other HIV
epitopes, and two of four SLYNTVATL responders had greater responses to
HIV peptides restricted by other class I alleles. In several
individuals, no HLA-A2-restricted epitopes were recognized, but
CD8+ T-cell responses were detected to epitopes restricted
by other HLA class I alleles. These data indicate that an individual's overall CD8+ T-cell response to HIV is not adequately
represented by the response to a single epitope and that individual
major histocompatibility complex class I alleles do not predict an
immunodominant response restricted by that allele. Accurate
quantification of total HIV-specific CD8+ T-cell responses
will require assessment of the response to all possible epitopes.
 |
INTRODUCTION |
CD8+ T-cell responses
are an integral part of the total immune response to lentiviruses. The
effect of lentivirus-specific CD8+ T-cell responses has
best been demonstrated in primate studies, wherein the removal of
CD8+ T cells from simian immunodeficiency virus
(SIV)-infected monkeys leads to increased viral replication (11,
27). SIV-specific CD8+ T-cell responses inhibit viral
replication after primary infection (8) and have been shown
to select for cytotoxic T-lymphocyte (CTL) escape mutations within
recognized epitopes (7). Additionally, the induction of
strong SIV-specific CD8+ T-cell responses has, in some
cases, correlated with protection from infection after challenge
(12). These findings and others support the hypothesis that
CD8+ T-cell responses are a correlate of protection in SIV
infection. Many lines of evidence also suggest that CD8+
T-cell responses are involved in protection from infection and progression in human immunodeficiency virus (HIV) infection. The appearance of HIV-specific CD8+ T cells is concomitant with
the suppression of viral load during primary infection (2,
18), and the loss of HIV-specific CD8+ T-cell
activity is often associated with rapid progression to AIDS
(16). Escape mutations in CD8+ T-cell epitopes
occur in many infected individuals, suggesting that HIV-specific
CD8+ T-cell surveillance exerts considerable selective
pressure on the virus (3, 9, 23). Finally, HIV-specific
CD8+ T-cell responses have been identified in multiply
exposed uninfected individuals (25, 26). Despite these
findings, however, we still do not have a full understanding of the
correlates of protection from infection or progression in HIV infection.
With the development of major histocompatibility complex (MHC) class I
tetramer technology (1), studies have quantified the
CD8+ T-cell populations specific for individual HIV
peptides and correlated these findings with various HIV disease
parameters (21, 22). The very nature of MHC class I
tetramers, however, imposes a critical limitation on the conclusions
that can be drawn from these studies. Over 100 different HIV type 1 (HIV-1) peptides recognized by HIV-specific CD8+ T cells
have been identified, likely representing only a fraction of the total
number of potential epitopes within the virus itself (17).
In most infected individuals the CD8+ T-cell response to
HIV is broad (6, 10, 24), with multiple epitopes restricted
by HLA-A, -B, or -C alleles being recognized. This suggests that the
use of MHC class I tetramers to examine responses to single peptides
could dramatically underestimate the total or most relevant response in
any tested individual. Because a unique tetramer molecule must be
produced for every single HIV peptide, it remains difficult to quantify
accurately the responses to multiple peptides in an individual and to
develop a hierarchy of responses in order to identify potentially
immunodominant peptides. Comparison of peptide responses between
individuals using MHC class I tetramers depends on immunodominance of
those peptides and assumes that those responses are representative of the total CD8+ T-cell response in each individual. It
remains to be determined if putative immunodominant epitopes are
dominant compared to all other epitopes or only those epitopes
restricted by the same MHC class I protein.
To begin to address these issues, we assessed intracellular gamma
interferon (IFN-
) production by CD8+ T cells from
HLA-A2+ donors in response to 95 optimally defined HLA
class I-restricted HIV-derived epitopes, using peptide mixes and a
peptide matrix system. Peptide-specific CD8+ T-cell
responses quantified by intracellular IFN-
production are directly
comparable to the responses observed when MHC class I tetramers bearing
the same peptide are used and are superior to peptide-specific
responses quantified by enzyme-linked spot analysis (20).
Intracellular IFN-
production has a considerable advantage over
tetramer analysis in that peptides alone are required to assess
CD8+ T-cell responses, rather than separate MHC class
I-peptide complexes for each peptide to be examined. Our results
indicate that the CD8+ T-cell response to a single HIV
peptide is rarely representative of the total HIV-specific
CD8+ T-cell response. Additionally, responses to a
putative immunodominant HIV epitope, if present at all, may be lower
than the response to other recognized HIV epitopes. Definition of
immunodominant HIV epitopes therefore requires a complete analysis of
all HIV peptides recognized within an HIV-infected individual.
Furthermore, given the diversity of MHC class I haplotypes within the
human population and our lack of understanding of the relationships between them, an extensive analysis of HIV-specific responses in large
numbers of individuals will be required to identify truly immunodominant HIV epitopes. The identification and characterization of
the role of immunodominant CD8+ T-cell epitopes are
critical in analyzing the immune response to HIV and other human
pathogens and developing appropriate vaccine strategies.
 |
MATERIALS AND METHODS |
Subjects.
Eleven HIV-1-infected HLA-A2+
individuals (as determined by molecular typing for 10 subjects or
serology for 1) with detectable viral load (
400 copies/ml) and CD4
T-cell counts greater than 200/µl were recruited into this study.
These individuals ranged from acute seroconverters to long-term
nonprogressors, and antiretroviral therapy within this cohort varied
between untreated, triple-drug therapy (highly active antiretroviral
therapy), and salvage regimens. Molecular subtyping of the HLA-A2
allele in 10 of the patients was performed as previously described
(4).
Peptides.
HIV peptides corresponding to the 95 optimally
defined HIV epitopes as described in the HIV Molecular Immunology
Database (17) were used; these included peptides from the
HIV gag, pol, env, and nef
gene products. The peptides were synthesized as free acids, and the
purity was greater than 80% in all cases. Lyophilized peptides were
resuspended in dimethyl sulfoxide at stock concentrations of 100 mg/ml
for peptide mixes and 10 mg/ml for peptide matrix and single-peptide
experiments. Peptide mixes contained the optimally defined epitopes
from a particular HIV protein (37 Gag, 18 Pol, 20 Env, and 20 Nef),
while the peptide matrix consisted of 20 pools containing up to 10 peptides. The matrix pools were arranged such that any particular
peptide could be found in only two pools, as described by Kern et al.
(15). The final concentration of each individual peptide was
2 µg/106 cells in all experiments described.
Cell stimulation.
Peripheral blood mononuclear cells (PBMC)
were obtained by standard Ficoll-Hypaque density centrifugation
(Pharmacia, Uppsala, Sweden). Stimulation was performed as described
elsewhere (14). Freshly isolated PBMC (106 in 1 ml of complete RPMI 1640 medium containing 10% fetal calf serum) were
incubated with 1 µg each of the costimulatory CD28 and CD49d
monoclonal antibodies and 2 µg of each peptide to be tested. To
control for spontaneous production of cytokine, cells incubated with
only costimulatory antibodies were included in every experiment. The
cultures were incubated at 37°C in a 5% CO2 incubator
for 1 h, followed by an additional 5-h incubation with the
secretion inhibitor brefeldin A (10 µg/ml; Sigma, St. Louis, Mo.).
Immunofluorescent staining.
Peptide-stimulated and control
cultures were washed (1,200 rpm, 8 min) in cold Dulbecco's
phosphate-buffered saline containing 1% bovine serum albumin and 0.1%
sodium azide and transferred into 5-ml Falcon polystyrene tubes for
staining. After an additional wash, the cells were surface stained with
directly conjugated CD3 and CD8 antibodies for 30 min on ice. The cells
were washed once, resuspended in 750 µl of 2× concentration
fixation/permeabilization solution (Becton Dickinson Immunocytometry
Systems, San Jose, Calif.), and incubated for 10 min in the dark at
room temperature. Permeabilized cells were washed twice and stained
with fluorochrome-conjugated IFN-
and CD69 antibodies for 30 min on
ice. After a final wash, the cells were resuspended in Dulbecco's
phosphate-buffered saline containing 1% paraformaldehyde (Electron
Microscopy Systems, Fort Washington, Pa.) prior to analysis.
Flow cytometric analysis.
Six-parameter flow cytometric
analysis was performed on a FACScalibur flow cytometer (Becton
Dickinson Immunocytometry Systems), using fluorescein isothiocyanate
(FITC), phycoerythrin (PE), peridinin-chlorophyll protein (PerCP), and
allophycocyanin (APC) as the fluorescent parameters. Between 100,000 and 130,000 live events were acquired, gated on small viable
lymphocytes and CD3 and CD8 expression. List mode data files were
analyzed using PAINT-A-GATEPlus software (Becton Dickinson
Immunocytometry Systems). In all experiments, responses were rated
positive when a population of IFN-
+ and
CD69+ events
0.05% (above background) of
CD3+ CD8+ lymphocytes was observed.
Antibodies.
Unconjugated mouse anti-human CD28, unconjugated
mouse anti-human CD49d, FITC-conjugated mouse anti-human IFN-
,
PE-conjugated mouse anti-human CD69, PerCP-conjugated mouse anti-human
CD3 and CD8, and APC-conjugated mouse anti-human CD3 and CD8 monoclonal antibodies, along with immunoglobulin G1 and G2 isotype-matched controls, were obtained from Becton Dickinson Immunocytometry Systems.
 |
RESULTS AND DISCUSSION |
In our initial experiments, we examined the response to the
HLA-A*0201-restricted HIV-1 Gag epitope p17 77-85 (SLYNTVATL) in 11 HLA-A2+ HIV-infected subjects. This epitope has been
reported to be an immunodominant epitope (4, 5), suggesting
that responses to this epitope should account for the majority of
Gag-specific responses in our HLA-A2+ HIV-infected cohort.
Surprisingly, we found that only 4 of 11 patients (patients 1, 4, 9, and 10) had significant responses to this epitope (Fig.
1). Three individuals (patients 2, 5, and 7) demonstrated very weak responses (~0.05%) to SLYNTVATL.
One of the nonresponders is HLA-A*0205/08 (patient 3 [Table
1]), which, although unlikely, may
explain why this individual failed to recognize SLYNTVATL. High levels
of SLYNTVATL-specific CD8+ T cells were found in patient 9 (3.53%), a moderate response was found in patient 4 (1.21%), and low
responses were found in patients 1 and 10 (0.3 and 0.33%,
respectively). Indeed, if responses to SLYNTVATL were assumed to
accurately reflect the total HIV-specific CTL response in these
individuals, the majority of them would be considered nonresponders.
However, since most HIV-infected individuals elicit broad HIV-specific
CD8+ T-cell responses, it is likely that these individuals
would recognize other HIV-derived peptides, restricted to HLA-A2 or
other MHC class I molecules.

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FIG. 1.
Assessment of p17 SLYNTVATL-specific IFN- production
in 11 HLA-A2+ HIV-positive patients. PBMC from each patient
were stimulated with 2 µg of SLYNTVATL peptide per ml and
costimulatory antibodies as described in Materials and Methods. The
number shown in each plot represents the percentage of CD3+
CD8+ CD69+ IFN- + events, with
background IFN- production subtracted. The background IFN-
production was 0.02% in all patients except patients 1 (0.03%), 4 (0.15%), and 11 (0.07%). Responses equal to or greater than 0.05%
above background are considered positive.
|
|
To test HIV-specific CD8+ T-cell responses to 95 optimally
defined CTL epitopes in these patients, we made four mixtures of HIV
epitopes such that each mixture contained all defined epitopes from a
particular HIV protein. These mixtures contained as many as 37 separate
epitopes (Gag) to as few as 18 (reverse transcriptase [RT]), with the
envelope and Nef mixtures containing 20 epitopes each. Little to no
appreciable IFN-
(<0.05%) was produced in response to these
peptide mixtures in HIV-negative controls (Fig. 2A). In contrast, nearly all (10 of 11)
of the HLA-A2+ HIV-infected subjects demonstrated IFN-
production by CD8+ T cells in response to the HIV epitope
mixes. Two representative examples shown in Fig. 2B indicate the wide
range of responses and specificities present within the cohort. Patient
9 had strong responses to the Gag, RT, and Nef epitope mixtures and a
weak response to the Env mixture. Patient 1 had moderate responses to
the Gag and RT epitope mixes and a weak response to the Env and Nef
mixtures. All patients except patient 8 showed recognition of at least
one epitope mixture (data not shown), and all 11 recognized an
HLA-A2-restricted control peptide (cytomegalovirus [CMV] pp65 NLVPMVATV [Table 1]). Comparison of the responding populations to the
Gag epitope mixtures and the individual peptide responses to p17
SLYNTVATL indicated that only in patient 4 were the Gag epitope mixture
and p17 SLYNTVATL peptide responses equivalent (Gag mix, 1.20%; p17
SLYNTVATL, 1.21%). This indicates that in the majority of these
patients, responses to the HLA-A2-restricted p17 SLYNTVATL epitope are
not representative of either the total Gag-specific CD8+
T-cell response or the overall HIV-specific response. These results call into question whether the HLA-A2-restricted p17 SLYNTVATL epitope
is immunodominant in the context of other HLA-A2-restricted HIV-1
epitopes or of the total array of HIV-1 epitopes restricted by other
HLA class I alleles.

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FIG. 2.
Intracellular IFN- production from CD8+ T
cells in response to HIV-1 peptide mixes. PBMC from HIV-seronegative
(A) or HIV-seropositive (B) individuals were incubated with HIV-1
peptide mixes for 6 h in the presence of the costimulatory
anti-CD28 and anti-CD49d antibodies and brefeldin A (final 5 h
only). After incubation, the cells were surface stained as described in
Materials and Methods. The number shown in the upper right corner of
each plot represents the percentage of CD69+
IFN- + CD3+ CD8+ cells responding
to the indicated peptide mixture.
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|
To identify candidate peptides to which each individual responded, we
used an epitope pool matrix system (Fig.
3A). Twenty pools of peptides were made,
such that each pool contained up to 10 individual epitopes. The
peptides were arranged so that each peptide was found in two pools,
allowing identification of candidate peptides by combining the results
of responding pools. The complete results of these analyses are shown
in Table 1. As an example, Fig. 3 shows the complete matrix analysis of
patient 10. Eleven of the 20 epitope pools stimulated IFN-
production from CD8+ T cells, suggesting that up to 28 separate peptides were potentially recognized. Analysis of these 28 peptides identified 7 recognized by CD8+ T cells in this
patient (peptides 1, 14, 43, 45, 46, 77, and 78 shown in Fig. 3B). The
majority of the patients recognized multiple peptides, and only patient
4 exhibited a monospecific response to p17 SLYNTVATL. With the
exception of patient 8, who failed to respond to any HIV epitopes
tested, all SLYNTVATL nonresponders recognized at least two HIV-1
peptides (Table 1, group 1), restricted to either HLA-A2 or other HLA
alleles. Three of the seven SLYNTVATL nonresponders recognized
other HLA-A2-restricted HIV-1 peptides, patients 2 and 6 recognizing RT 476-484 (ILKEPVHGV) peptide and patient 7 recognizing
gp120 818-827. In four of the SLYNTVATL nonresponders, there was no
response to any HLA-A2-restricted HIV epitope, although all the
subjects recognized the HLA-A2-restricted CMV epitope. For example,
Fig. 4A shows the peptides recognized by
CD8+ T cells in subject 11. This patient recognizes five
different peptides (and one additional overlapping peptide [Table
1]), restricted to HLA-A32 or HLA-B57. The response to peptide 83 (p24 147-155 [ISPRTLNAW]), restricted by HLA-B57, is quite strong (2.14% of CD3+ CD8+ lymphocytes) compared to the other
responses. Thus, in these HLA-A2+ individuals, examination
of responses to the p17 SLYNTVATL epitope alone would severely
underestimate the total CD8+ T-cell response to HIV, and
most would be inappropriately classified as having low or absent
HIV-specific CD8+ T-cell responses.

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FIG. 3.
Identification of individual peptide responses using a
peptide pool matrix. PBMC from patient 10 were incubated in the
presence of costimulatory antibodies and brefeldin A as described in
Materials and Methods with 20 epitope pools (in bold), each containing
up to 10 HIV-1 peptides (A). The percentage of IFN- production to
each pool from CD3+ CD8+ CD69+
small lymphocytes is shown at the right and along the bottom. Those
peptides that could potentially be recognized, as determined by the
pool responses, are in gray boxes. The actual peptides recognized (B)
are in red-bordered gray boxes. The plots in panel B show the
CD8+ T-cell response to the peptide mixes and individual
peptides (as identified through the matrix analysis) in patient 10, where the number shown in each box represents the percentage of
CD3+ CD8+ CD69+
IFN- + events. The response to each peptide is shown in
the top of each plot, as is the peptide source (i.e., HIV protein) and
sequence of the peptide. Background IFN- production in patient 10 was less than 0.01%.
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FIG. 4.
Additional HIV epitopes recognized in a p17 SLYNTVATL
nonresponder and responder. Potentially recognized epitopes were
identified by peptide matrix analysis in all 11 subjects.
Single-peptide analysis was performed to determine the peptides
recognized in each subject. Shown are those responses identified in a
representative SLYNTVATL nonresponder (A) and SLYNTVATL responder (B).
As in the previous figures, all events shown are CD3+ and
CD8+ gated events. The percentages represent those events
that are CD69+ and IFN- + within the
CD8+ T-cell subset. Peptide numbers correspond to those
shown in Fig. 3A. Each plot also shows the HLA restriction, source of
peptide, and sequence, consecutively, of the peptide tested. The
HLA-A2-restricted CMV peptide pp65 NLVPMVATV was included in all
experiments as a positive control to demonstrate that all
HLA-A2+ patients recognized an HLA-A2-restricted peptide.
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|
Similarly, the SLYNTVATL responders also recognized other HIV-1
epitopes (Table 1, group 2). Three of four SLYNTVATL
responders (patients 1, 9, and 10) recognized two or more additional
peptides. Only patient 4 showed recognition of SLYNTVATL alone.
However, only two peptides restricted to HLA-B44 were included in the
epitope matrix, and no peptides restricted to HLA-B70 were included.
Thus, it is quite possible that patient 4 responds to presently
undefined HIV epitopes restricted to either of these alleles. Figure 4B shows the additional CD8+ T-cell responses identified in
patient 1. This patient has responses to two additional epitopes,
peptide 10 (A3-restricted p17 RLRPGGKKK) and peptide 78 (B51-restricted
RT TAFTIPSI). In this patient, the CD8+ response to the
TAFTIPSI epitope was, in fact, higher than the response to the
SLYNTVATL epitope. Thus, patients that respond to SLYNTVATL are likely
to respond to other HIV epitopes restricted to HLA alleles, and in some
SLYNTVATL responders, more potent CD8+ T-cell activity may
exist to other epitopes restricted by other HLA alleles.
To use single-peptide responses as a predictor for overall T-cell
responses, it is first necessary to identify truly immunodominant epitopes. Immunodominance of CD8+ T-cell epitopes has been
well documented in the relatively controlled environment of the inbred
mouse (28, 30), but in these inbred populations,
heterogeneity in the MHC and non-MHC genes influencing T-cell receptor
repertoire, epitope processing, and presentation is at a minimum.
Predicting immunodominant CD8+ T-cell responses in humans,
however, is more complicated, given the high diversity of MHC class I
haplotypes found within the general population and the likely similar
heterogeneity among non-MHC class I genes influencing this process.
Several putative immunodominant peptides have been identified for some
human MHC class I haplotypes, including the HLA-A2-restricted epitopes
influenza virus M1 58-66 (19) and CMV pp65 495-503
(29). It is unclear, however, whether these peptides are
immunodominant for their particular MHC class I allele or for the
entire response specific for the virus. Furthermore, response
hierarchies resulting from different combinations of the many available
MHC class I genes are virtually unexplored. These issues apply to
HIV-specific CD8+ T-cell responses as well, where most
studies have focused on relatively few peptides, in particular
the HLA-A2-restricted epitopes p17 77-85 (SLYNTVATL) and Pol
476-484 (ILKEPVHGV) (21, 22). These epitopes are often
referred to as immunodominant epitopes (4, 5, 13), yet it
remains unclear whether they are immunodominant compared to other
HLA-A2-restricted epitopes only or compared to all recognized HIV
epitopes within an infected individual. Our results suggest that
SLYNTVATL may be a common HLA-A2-restricted HIV epitope (if a
HLA-A2-restricted response is present) but is not necessarily the
immunodominant epitope compared to other HIV-derived epitopes.
These results call into question the validity of using the response to
a single HIV epitope as a surrogate measure of the total HIV-specific
CD8+ T-cell response. As we have clearly shown, SLYNTVATL
responses, often used as a predictor of the total immune response in
HLA-A2+ HIV-infected patients (21, 22), are not
comparable to the total HIV-specific CD8+ T-cell responses
in most individuals. This suggests that it may be difficult to
interpret relationships between viral load and single-epitope responses
to define the functional antiviral activity of HIV-specific
CD8+ T-cells in vivo. Recently, these relationships have
been examined using MHC class I tetramers containing single HIV-1
peptides, typically p17 SLYNTVATL and RT ILKEPVHGV (21),
where a negative correlation between SLYNTVATL- and ILKEPVHGV-specific
CD8+ T-cell numbers and viral load was found. As we have
demonstrated, most HIV-infected patients recognize multiple HIV-1
peptides, and rarely is a monotypic response identified. It would be
prudent to reexamine the relationship between CD8+ T-cell
responses and viral load using a more representative panel of
peptides to obtain an accurate assessment of the total HIV-specific CD8+ T-cell response. Certainly, many HLA-A2+
individuals identified in previous studies as having poor SLYNTVATL recognition could have potent CD8+ T-cell responses
specific for other HIV-1 peptides restricted by other HLA alleles.
It should be noted that even multiple-peptide analysis described here
may still underestimate the total CD8+ T-cell response in
these individuals, since there are likely to be more than 95 epitopes,
many of which remain to be identified. These could be rapidly
identified using peptide matrices containing overlapping peptides
comprising the entire amino acid sequence of the viral protein of
interest. Using epitope mixes and pools, it is clear that the response
obtained to the individual peptides is representative of the responses
obtained to the pools containing those same peptides. Additionally, the
response obtained with the epitope mixes (Fig. 3B, top four panels) is
approximately equal to the sum of the responses to the individual
peptides (Fig. 3B, bottom six panels). Through the use of epitope
matrices, large numbers of peptides can be screened to identify the
individual epitopes being recognized. Importantly, the techniques
described here are not constrained by the availability of unique
peptide-MHC tetramer combinations.
Precise identification of immunodominant HIV epitopes will require
extensive characterization of the CD8+ T-cell responses in
a large number of infected individuals of various MHC class I
haplotypes. Our results suggest that SLYNTVATL alone should not
be used as a predictor of an individual's CD8+ T-cell
response to HIV, and potential vaccines should not be dismissed solely
on the basis of an inability to stimulate a SLYNTVATL response in
HLA-A2+ subjects. Until truly immunodominant epitopes have
been identified, assessment of candidate vaccine regimens, as well as
analysis of immune reconstitution during viral therapy, should be
performed without the assumption that the response to a single peptide
represents the total HIV-specific response.
 |
ACKNOWLEDGMENTS |
We thank Daniel C. Douek for helpful conversations and review of
the manuscript.
This work was supported by grants AI35522 and AI47603 to R.A.K. from
the National Institutes of Health. R.A.K. is an Elizabeth Glaser
Scientist of the Elizabeth Glaser Pediatric AIDS Foundation.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Internal Medicine, University of Texas Southwestern Medical Center,
Dallas, TX 75390-9113. Phone: (214) 648-2807. Fax: (214) 648-2431. E-mail: richard.koup{at}emailswmed.edu.
 |
REFERENCES |
| 1.
|
Altman, J. D.,
P. A. H. Moss,
P. J. R. Goulder,
D. H. Barouch,
M. G. McHeyzer-Williams,
J. I. Bell,
A. J. McMichael, and M. M. Davis.
1996.
Phenotypic analysis of antigen-specific T lymphocytes.
Science
274:94-96[Abstract/Free Full Text].
|
| 2.
|
Borrow, P.,
H. Lewicki,
B. H. Hahn,
G. M. Shaw, and M. B. Oldstone.
1994.
Virus-specific CD8+ cytotoxic T-lymphocyte activity associated with control of viremia in primary human immunodeficiency virus type 1 infection.
J. Virol.
68:6103-6110[Abstract/Free Full Text].
|
| 3.
|
Borrow, P., and G. M. Shaw.
1998.
Cytotoxic T-lymphocyte escape viral variants: how important are they in viral evasion of immune clearance in vivo?
Immunol. Rev.
164:37-51[CrossRef][Medline].
|
| 4.
|
Brander, C.,
K. E. Hartman,
A. K. Trocha,
N. G. Jones,
R. P. Johnson,
B. Korber,
P. Wentworth,
S. P. Buchbinder,
S. Wolinsky,
B. D. Walker, and S. A. Kalams.
1998.
Lack of strong immune selection pressure by the immunodominant, HLA- A*0201-restricted cytotoxic T lymphocyte response in chronic human immunodeficiency virus-1 infection.
J. Clin. Investig.
101:2559-2566[Medline].
|
| 5.
|
Brander, C.,
O. O. Yang,
N. G. Jones,
Y. Lee,
P. Goulder,
R. P. Johnson,
A. Trocha,
D. Colbert,
C. Hay,
S. Buchbinder,
C. C. Bergmann,
H. J. Zweerink,
S. Wolinsky,
W. A. Blattner,
S. A. Kalams, and B. D. Walker.
1999.
Efficient processing of the immunodominant, HLA-A*0201-restricted human immunodeficiency virus type 1 cytotoxic T-lymphocyte epitope despite multiple variations in the epitope flanking sequences.
J. Virol.
73:10191-10198[Abstract/Free Full Text].
|
| 6.
|
Dalod, M.,
M. Dupuis,
J. C. Deschemin,
D. Sicard,
D. Salmon,
J. F. Delfraissy,
A. Venet,
M. Sinet, and J. G. Guillet.
1999.
Broad, intense anti-human immunodeficiency virus (HIV) ex vivo CD8+ responses in HIV type 1-infected patients: comparison with anti-Epstein-Barr virus responses and changes during antiretroviral therapy.
J. Virol.
73:7108-7116[Abstract/Free Full Text].
|
| 7.
|
Evans, D. T.,
D. H. O'Connor,
P. Jing,
J. L. Dzuris,
J. Sidney,
J. da Silva,
T. M. Allen,
H. Horton,
J. E. Venham,
R. A. Rudersdorf,
T. Vogel,
C. D. Pauza,
R. E. Bontrop,
R. DeMars,
A. Sette,
A. L. Hughes, and D. I. Watkins.
1999.
Virus-specific cytotoxic T-lymphocyte responses select for amino-acid variation in simian immunodeficiency virus Env and Nef.
Nat. Med.
5:1270-1276[CrossRef][Medline].
|
| 8.
|
Gallimore, A.,
M. Cranage,
N. Cook,
N. N. Almond,
J. Bootman,
E. Rud,
P. Silvera,
M. Dennis,
T. Corcoran,
J. Stott,
A. McMichael, and F. Gotch.
1995.
Early suppression of SIV replication by CD8+ nef-specific cytotoxic T cells in vaccinated macaques.
Nat. Med.
1:1067-1073[CrossRef][Medline].
|
| 9.
|
Goulder, P. J.,
R. E. Phillips,
R. A. Colbert,
S. McAdam,
G. Ogg,
M. A. Nowak,
P. Giangrande,
G. Luzzi,
B. Morgan,
A. Edwards,
A. J. McMichael, and S. Rowland-Jones.
1997.
Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS.
Nat. Med.
3:212-217[CrossRef][Medline].
|
| 10.
|
Harrer, E.,
T. Harrer,
S. Buchbinder,
D. L. Mann,
M. Feinberg,
T. Yilma,
R. P. Johnson, and B. D. Walker.
1994.
HIV-1-specific cytotoxic T lymphocyte response in healthy, long-term nonprogressing seropositive persons.
AIDS Res. Hum. Retroviruses
10:S77-S78.
|
| 11.
|
Jin, X.,
D. E. Bauer,
S. E. Tuttleton,
S. Lewin,
A. Gettie,
J. Blanchard,
C. E. Irwin,
J. T. Safrit,
J. Mittler,
L. Weinberger,
L. G. Kostrikis,
L. Zhang,
A. S. Perelson, and D. D. Ho.
1999.
Dramatic rise in plasma viremia after CD8(+) T cell depletion in simian immunodeficiency virus-infected macaques.
J. Exp. Med.
189:991-998[Abstract/Free Full Text].
|
| 12.
|
Johnson, R. P., and R. C. Desrosiers.
1998.
Protective immunity induced by live attenuated simian immunodeficiency virus.
Curr. Opin. Immunol.
10:436-443[CrossRef][Medline].
|
| 13.
|
Johnson, R. P.,
A. Trocha,
L. Yang,
G. P. Mazzara,
D. L. Panicali,
T. M. Buchanan, and B. D. Walker.
1991.
HIV-1 gag-specific cytotoxic T lymphocytes recognize multiple highly conserved epitopes: fine specificity of the gag-specific response defined by using unstimulated peripheral blood mononuclear cells and cloned effector cells.
J. Immunol.
147:1512-1521[Abstract].
|
| 14.
|
Kern, F.,
I. P. Surel,
C. Brock,
B. Freistedt,
H. Radtke,
A. Scheffold,
R. Blasczyk,
P. Reinke,
J. Schneider-Mergener,
A. Radbruch,
P. Walden, and H. D. Volk.
1998.
T-cell epitope mapping by flow cytometry.
Nat. Med.
4:975-978[CrossRef][Medline].
|
| 15.
|
Kern, F.,
I. P. Surel,
N. Faulhaber,
C. Frommel,
J. Schneider-Mergener,
C. Schonemann,
P. Reinke, and H. D. Volk.
1999.
Target structures of the CD8+-T-cell response to human cytomegalovirus: the 72-kilodalton major immediate-early protein revisited.
J. Virol.
73:8179-8184[Abstract/Free Full Text].
|
| 16.
|
Klein, M. R.,
C. A. van Baalen,
A. M. Holwerda,
S. R. Kerkhof-Garde,
R. J. Bende,
I. P. M. Keet,
J.-K. M. Eeftinck-Schattenkerk,
A. D. M. E. Osterhaus,
H. Schuitemaker, and F. Miedema.
1995.
Kinetics of gag-specific cytotoxic T lymphocyte responses during the clinical course of HIV-1 infection: a longitudinal analysis of rapid progressors and long-term asymptomatics.
J. Exp. Med.
181:1365-1372[Abstract/Free Full Text].
|
| 17.
|
Korber, B. T. M.,
C. Brander,
B. D. Walker,
R. A. Koup,
J. P. Moore,
B. F. Haynes, and G. Myers.
1998.
HIV Molecular Immunology Database.
Los Alamos National Laboratory, Los Alamos, N. Mex.
|
| 18.
|
Koup, R. A.,
J. T. Safrit,
Y. Cao,
C. A. Andrews,
Y. Wu,
G. McLeod,
W. Borkowsky,
C. Farthing, and D. D. Ho.
1994.
Temporal association of cellular immune response with the initial control of viremia in primary human immunodeficiency virus type 1 syndrome.
J. Virol.
68:4650-4655[Abstract/Free Full Text].
|
| 19.
|
Lalvani, A.,
R. Brookes,
S. Hambleton,
W. J. Britton,
A. V. Hill, and A. J. McMichael.
1997.
Rapid effector function in CD8+ memory T cells.
J. Exp. Med.
186:859-865[Abstract/Free Full Text].
|
| 20.
|
Murali-Krishna, K.,
J. D. Altman,
M. Suresh,
D. J. Sourdive,
A. J. Zajac,
J. D. Miller,
J. Slansky, and R. Ahmed.
1998.
Counting antigen-specific CD8 T cells: a reevaluation of bystander activation during viral infection.
Immunity
8:177-187[CrossRef][Medline].
|
| 21.
|
Ogg, G. S.,
X. Jin,
S. Bonhoeffer,
P. R. Dunbar,
M. A. Nowak,
S. Monard,
J. P. Segal,
Y. Cao,
S. L. Rowland-Jones,
V. Cerundolo,
A. Hurley,
M. Markowitz,
D. D. Ho,
D. F. Nixon, and A. J. McMichael.
1998.
Quantitation of HIV-1-specific cytotoxic T lymphocytes and plasma load of viral RNA.
Science
279:2103-2106[Abstract/Free Full Text].
|
| 22.
|
Ogg, G. S.,
X. Jin,
S. Bonhoeffer,
P. Moss,
M. A. Nowak,
S. Monard,
J. P. Segal,
Y. Cao,
S. L. Rowland-Jones,
A. Hurley,
M. Markowitz,
D. D. Ho,
A. J. McMichael, and D. F. Nixon.
1999.
Decay kinetics of human immunodeficiency virus-specific effector cytotoxic T lymphocytes after combination antiretroviral therapy.
J. Virol.
73:797-800[Abstract/Free Full Text].
|
| 23.
|
Price, D. A.,
P. J. Goulder,
P. Klenerman,
A. K. Sewell,
P. J. Easterbrook,
M. Troop,
C. R. Bangham, and R. E. Phillips.
1997.
Positive selection of HIV-1 cytotoxic T lymphocyte escape variants during primary infection.
Proc. Natl. Acad. Sci. USA
94:1890-1895[Abstract/Free Full Text].
|
| 24.
|
Rinaldo, C.,
X.-L. Huang,
Z. Fan,
M. Ding,
L. Beltz,
A. Logar,
D. Panicali,
G. Mazzara,
J. Liebmann,
M. Cottrill, and P. Gupta.
1995.
High levels of anti-human immunodeficiency virus type 1 (HIV-1) memory cytotoxic T-lymphocyte activity and low viral load are associated with lack of disease in HIV-1-infected long-term nonprogressors.
J. Virol.
69:5838-5842[Abstract].
|
| 25.
|
Rowland-Jones, S.,
J. Sutton,
K. Ariyoshi,
T. Dong,
F. Gotch,
S. McAdam,
D. Whitby,
S. Sabally,
A. Gallimore,
T. Corrah,
M. Takiguchi,
T. Schultz,
A. McMichael, and H. Whittle.
1995.
HIV-specific cytotoxic T-cells in HIV-exposed but uninfected Gambian women.
Nat. Med.
1:59-64[CrossRef][Medline].
|
| 26.
|
Rowland-Jones, S. L.,
D. F. Nixon,
F. Gotch,
N. Hallam,
K. Froebel,
M. C. Aldhous,
K. Ariyoshi,
J. S. Kroll, and A. McMichael.
1993.
HIV-specific cytotoxic T-cell activity in an HIV-exposed but uninfected infant.
Lancet
341:860-861[CrossRef][Medline].
|
| 27.
|
Schmitz, J. E.,
M. J. Kuroda,
S. Santra,
V. G. Sasseville,
M. A. Simon,
M. A. Lifton,
P. Racz,
K. Tenner-Racz,
M. Dalesandro,
B. J. Scallon,
J. Ghrayeb,
M. A. Forman,
D. C. Montefiori,
E. P. Rieber,
N. L. Letvin, and K. A. Reimann.
1999.
Control of viremia in simian immunodeficiency virus infection by CD8+ lymphocytes.
Science
283:857-860[Abstract/Free Full Text].
|
| 28.
|
van der Most, R. G.,
A. Sette,
C. Oseroff,
J. Alexander,
K. Murali-Krishna,
L. L. Lau,
S. Southwood,
J. Sidney,
R. W. Chesnut,
M. Matloubian, and R. Ahmed.
1996.
Analysis of cytotoxic T cell responses to dominant and subdominant epitopes during acute and chronic lymphocytic choriomeningitis virus infection.
J. Immunol.
157:5543-5554[Abstract].
|
| 29.
|
Wills, M. R.,
A. J. Carmichael,
K. Mynard,
X. Jin,
M. P. Weekes,
B. Plachter, and J. G. P. Sissons.
1996.
The human cytotoxic T-lymphocyte (CTL) response to cytomegalovirus is dominated by structural protein pp65: frequency, specificity, and T-cell receptor usage of pp65-specific CTL.
J. Virol.
70:7569-7579[Abstract].
|
| 30.
|
Yewdell, J. W., and J. R. Bennink.
1999.
Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses.
Annu. Rev. Immunol.
17:51-88[CrossRef][Medline].
|
Journal of Virology, October 2000, p. 9144-9151, Vol. 74, No. 19
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-
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-
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-
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[Abstract]
[Full Text]
-
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(2002). Differences Between T Cell Epitopes Recognized After Immunization and After Infection. J. Immunol.
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[Abstract]
[Full Text]
-
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(2002). Mice Deficient in Perforin, CD4+ T Cells, or CD28-Mediated Signaling Maintain the Typical Immunodominance Hierarchies of CD8+ T-Cell Responses to Influenza Virus. J. Virol.
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[Abstract]
[Full Text]
-
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(2002). Comprehensive Analysis of CD8+-T-Cell Responses against Hepatitis C Virus Reveals Multiple Unpredicted Specificities. J. Virol.
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[Abstract]
[Full Text]
-
Currier, J. R., deSouza, M., Chanbancherd, P., Bernstein, W., Birx, D. L., Cox, J. H.
(2002). Comprehensive Screening for Human Immunodeficiency Virus Type 1 Subtype-Specific CD8 Cytotoxic T Lymphocytes and Definition of Degenerate Epitopes Restricted by HLA-A0207 and -CW0304 Alleles. J. Virol.
76: 4971-4986
[Abstract]
[Full Text]
-
Douek, D. C., Betts, M. R., Brenchley, J. M., Hill, B. J., Ambrozak, D. R., Ngai, K.-L., Karandikar, N. J., Casazza, J. P., Koup, R. A.
(2002). A Novel Approach to the Analysis of Specificity, Clonality, and Frequency of HIV-Specific T Cell Responses Reveals a Potential Mechanism for Control of Viral Escape. J. Immunol.
168: 3099-3104
[Abstract]
[Full Text]
-
Boon, A. C. M., de Mutsert, G., Graus, Y. M. F., Fouchier, R. A. M., Sintnicolaas, K., Osterhaus, A. D. M. E., Rimmelzwaan, G. F.
(2002). The Magnitude and Specificity of Influenza A Virus-Specific Cytotoxic T-Lymphocyte Responses in Humans Is Related to HLA-A and -B Phenotype. J. Virol.
76: 582-590
[Abstract]
[Full Text]
-
Betts, M. R., Ambrozak, D. R., Douek, D. C., Bonhoeffer, S., Brenchley, J. M., Casazza, J. P., Koup, R. A., Picker, L. J.
(2001). Analysis of Total Human Immunodeficiency Virus (HIV)-Specific CD4+ and CD8+ T-Cell Responses: Relationship to Viral Load in Untreated HIV Infection. J. Virol.
75: 11983-11991
[Abstract]
[Full Text]
-
Ortiz, G. M., Wellons, M., Brancato, J., Vo, H. T. T., Zinn, R. L., Clarkson, D. E., Van Loon, K., Bonhoeffer, S., Miralles, G. D., Montefiori, D., Bartlett, J. A., Nixon, D. F.
(2001). Structured antiretroviral treatment interruptions in chronically HIV-1-infected subjects. Proc. Natl. Acad. Sci. USA
10.1073/pnas.221452198v1
[Abstract]
[Full Text]
-
Lieberman, J., Shankar, P., Manjunath, N., Andersson, J.
(2001). Dressed to kill? A review of why antiviral CD8 T lymphocytes fail to prevent progressive immunodeficiency in HIV-1 infection. Blood
98: 1667-1677
[Abstract]
[Full Text]
-
Day, C. L., Shea, A. K., Altfeld, M. A., Olson, D. P., Buchbinder, S. P., Hecht, F. M., Rosenberg, E. S., Walker, B. D., Kalams, S. A.
(2001). Relative Dominance of Epitope-Specific Cytotoxic T-Lymphocyte Responses in Human Immunodeficiency Virus Type 1-Infected Persons with Shared HLA Alleles. J. Virol.
75: 6279-6291
[Abstract]
[Full Text]
-
Casazza, J. P., Betts, M. R., Picker, L. J., Koup, R. A.
(2001). Decay Kinetics of Human Immunodeficiency Virus-Specific CD8+ T Cells in Peripheral Blood after Initiation of Highly Active Antiretroviral Therapy. J. Virol.
75: 6508-6516
[Abstract]
[Full Text]
-
Addo, M. M., Altfeld, M., Rosenberg, E. S., Eldridge, R. L., Philips, M. N., Habeeb, K., Khatri, A., Brander, C., Robbins, G. K., Mazzara, G. P., Goulder, P. J. R., Walker, B. D., the HIV Controller Study Collaboration,
(2001). The HIV-1 regulatory proteins Tat and Rev are frequently targeted by cytotoxic T lymphocytes derived from HIV-1-infected individuals. Proc. Natl. Acad. Sci. USA
98: 1781-1786
[Abstract]
[Full Text]
-
Goulder, P. J.R., Altfeld, M. A., Rosenberg, E. S., Nguyen, T., Tang, Y., Eldridge, R. L., Addo, M. M., He, S., Muckerjee, J. S., Phillips, M. N., Bunce, M., Kalams, S. A., Sekaly, R. P., Walker, B. D., Brander, C.
(2001). Substantial Differences in Specificity of HIV-Specific Cytotoxic T Cells in Acute and Chronic HIV Infection. JEM
193: 181-194
[Abstract]
[Full Text]
-
Goulder, P. J.R., Tang, Y., Brander, C., Betts, M. R., Altfeld, M., Annamalai, K., Trocha, A., He, S., Rosenberg, E. S., Ogg, G., O'Callaghan, C. A., Kalams, S. A., McKinney, R. E. Jr., Mayer, K., Koup, R. A., Pelton, S. I., Burchett, S. K., McIntosh, K., Walker, B. D.
(2000). Functionally Inert HIV-Specific Cytotoxic T Lymphocytes Do Not Play a Major Role in Chronically Infected Adults and Children. JEM
192: 1819-1832
[Abstract]
[Full Text]
-
Ortiz, G. M., Wellons, M., Brancato, J., Vo, H. T. T., Zinn, R. L., Clarkson, D. E., Van Loon, K., Bonhoeffer, S., Miralles, G. D., Montefiori, D., Bartlett, J. A., Nixon, D. F.
(2001). Structured antiretroviral treatment interruptions in chronically HIV-1-infected subjects. Proc. Natl. Acad. Sci. USA
98: 13288-13293
[Abstract]
[Full Text]