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Journal of Virology, October 2000, p. 9125-9133, Vol. 74, No. 19
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Full-Length GB Virus C (Hepatitis G Virus) RNA
Transcripts Are Infectious in Primary CD4-Positive T Cells
Jinhua
Xiang,1
Sabina
Wünschmann,1
Warren
Schmidt,1
Jianqiang
Shao,2 and
Jack T.
Stapleton1,*
Departments of Internal Medicine and
Research1 and the University of Iowa
Central Microscopy Research Facility,2 Iowa City
Veterans Administration Medical Center and The University of Iowa
College of Medicine, Iowa City, Iowa 52242
Received 24 February 2000/Accepted 21 June 2000
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ABSTRACT |
GB virus C (GBV-C or hepatitis G virus) is a recently described
flavivirus which frequently leads to chronic viremia in humans. Although GBV-C is associated with acute posttransfusion hepatitis, it
is not clear if the virus is pathogenic for humans. We constructed a
full-length cDNA from the plasma of a person with chronic GBV-C viremia. Peripheral blood mononuclear cells (PBMCs) transfected with
full-length RNA transcripts from this GBV-C clone resulted in viral
replication. This was demonstrated by serial passage of virus from cell
culture supernatants, detection of increasing concentrations of
positive- and negative-sense GBV-C RNA over time, and the detection of
the GBV-C E2 antigen by confocal microscopy. In addition, two types of
GBV-C particles were identified in cell lysates; these particles had
buoyant densities of 1.06 and 1.12 to 1.17 g/ml in sucrose gradients.
PBMCs sorted for expression of CD4 contained 100-fold-more GBV-C RNA
than CD4-negative cells. Taken together, these data demonstrate that
RNA transcripts from GBV-C full-length cDNA are infectious in primary
CD4-positive T cells. In contrast, RNA transcripts from an infectious
hepatitis C virus clone did not replicate in the same cell culture
system. Infectious RNA transcripts from GBV-C cDNA should prove useful for studying viral replication and may allow identification of differences between GBV-C and hepatitis C virus cultivation in vitro.
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INTRODUCTION |
GB virus type C (GBV-C, also called
hepatitis G virus) is a recently described virus whose genomic
organization and nucleotide sequence place it in the
Flaviviridae. It is the most closely related human virus to
hepatitis C virus (HCV) (25, 27, 41). Although GBV-C was
originally associated with posttransfusion hepatitis in humans
(27), subsequent epidemiological studies indicated that it
does not cause acute or chronic hepatitis (4, 5). In
addition, experimental GBV-C infection of chimpanzees was not
associated with acute hepatitis (8). Nonetheless, persistent GBV-C viremia (as detected by reverse transcriptase PCR [RT-PCR]) is
common, with 0.9 to 3% of healthy U.S. blood donors and approximately 20 to 30% of patients with HCV infection persistently infected with
GBV-C (11, 15, 17, 41, 42, 45). Following infection, about
80% of people clear their viremia, concomitantly developing antibodies
to the GBV-C E2 protein (15, 17, 47). Thus, it is estimated
that approximately 20% of infected people remain viremic for long
periods of time. GBV-C appears to be transmitted primarily by
parenteral exposure (41), although there are data suggesting
that sexual and/or household transmission of GBV-C infection may occur
(2, 12, 31, 46, 49).
Like other members of the Flaviviridae, GBV-C is a
positive-strand RNA virus which encodes a single long open reading
frame (ORF) (25). The GBV-C polyprotein is predicted to be
cleaved into two envelope proteins (E1 and E2), an RNA helicase, a
trypsin-like serine protease, and an RNA-dependent RNA polymerase. A
major difference between GBV-C and HCV is in the amino terminus of the polyprotein. In many of the reported viral sequences, this region is
truncated and no core (or nucleocapsid) coding region is present (41, 51). In vitro translation experiments suggest that the AUG immediately upstream of the coding sequence for the putative E1
protein is preferentially used to initiate translation, although there
may be as many as four AUGs in frame with the polyprotein coding
sequence upstream of this AUG (40). In addition, the mutation frequency in codon positions 1 and 2 of the region upstream of
this AUG suggests that it is a noncoding region (32). These observations have led to speculation that GBV-C may not have a core
protein or nucleocapsid (13, 40). However, we and others have shown that the sedimentation profiles of GBV-C particles are
consistent with the presence of a nucleocapsid (30, 52), and
electron microscopy of plasma-derived GBV-C demonstrated enveloped particles with a nucleocapsid structure (51). Although the
amino acid composition of the nucleocapsid remains undefined, some
infected individuals have antibodies to a peptide representing amino
acids upstream of the predicted E1 protein in frame with the
polyprotein (52). Thus, this region may encode the nucleocapsid.
Full-length cDNAs or RNA transcripts of several RNA viruses including
hepatitis A virus, GBV-B, and HCV are infectious in cell culture or
animal inoculation studies (6, 7, 9, 14, 18, 22, 53, 54).
These infectious clones are useful for genetic studies and allow a
precise method for evaluating the evolution of viruses that normally
exist in molecular quasispecies. The site of GBV-C replication has not
been clearly identified, but it appears that replication in the
hepatocyte, if it occurs, is not the primary source of virus in
infected individuals (24, 33, 37). Recently, there were
reports that human peripheral blood mononuclear cells (PBMCs) and
interferon-resistant Daudi cells are permissive for GBV-C replication
(16, 38). In addition, transient replication of GBV-C in
MT-2 cells (a human T-cell line) (19) and PH5CH cells (a
human hepatocyte line immortalized with simian virus 40 large T
antigen) (37) was described. In this study, we describe the
construction of a full-length cDNA clone of GBV-C. GBV-C RNA
transcripts synthesized in vitro were transfected into PBMCs and a
T-cell line and proved to be infectious in PBMCs. By comparison, RNA
transcripts of a full-length cDNA infectious HCV clone (22)
were not infectious under identical conditions.
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MATERIALS AND METHODS |
Isolation and preparation of cells.
PBMCs from healthy blood
donors (HCV RNA and antibody negative, GBV-C RNA negative, and
hepatitis B virus surface antigen negative) were isolated from
heparinized blood by centrifugation on Ficoll-Hypaque gradients, washed
twice with phosphate-buffered saline (PBS), and suspended in RPMI 1640 medium (Sigma, St. Louis, Mo.) supplemented with 10% fetal calf serum
(FCS) and antibiotics as previously described (10). PBMC
cultures (2 × 106 cells/ml) were maintained in RPMI
1640 containing phytohemagglutinin (PHA; 10 µg/ml; Difco, Detroit,
Mich.) and 5% interleukin-2 (IL-2) (Cellular Products Inc., Buffalo,
N.Y.) at 36°C in 5% CO2. PBMC cultures used for
transfection were maintained in the same medium, except that
Escherichia coli lipopolysaccharide (10 µg/ml; Sigma) was
added to the medium for 48 h prior to transfection. Following transfection, cells were maintained in RPMI 1640 supplemented with PHA
(5 µg/ml) and IL-2 only. MOLT-4 cells were maintained in RPMI 1640 containing 10% FCS and antibiotics as previously described
(50a). All blood donors volunteered to participate in these
studies, and informed consent was obtained. These studies were approved
by the University of Iowa Institution Review Board.
GBV-C RNA preparation and RT-PCR.
A previously described
GBV-C RNA-positive patient with a diagnosis of chronic liver disease
was selected for this study (52). This patient did not have
detectable HCV antibodies (EIA 2.0; Abbott Laboratories, North Chicago,
Ill.) or RNA. RNA was prepared from plasma using a previously described
guanidinium isothiocyanate RNA extraction method (36). GBV-C
RNA was detected using nested oligonucleotide primers from the 5'
nontranslated region (NTR) as previously described (52).
Primers used for producing the full-length clone are described below.
All RT-PCRs utilized Moloney murine leukemia virus (MMLV) RT (40 U) as
previously described (43); the addition of MMLV RT was
followed by 35 cycles of PCR (94°C for 30 s, 55°C for 30 s, and 72°C for 45 s). Three microliters of the first-round PCR
mixture served as the template for 35 cycles of second-round PCR using
nested primers and the same time and temperature settings
(36). To ensure that our RT-PCR methods were specific for
GBV-C and did not amplify bovine diarrhea virus (BVDV) potentially
present in FCS, we utilized BVDV primers which were previously shown to
amplify most strains of BVDV (34). RT-PCR was performed with
the sense (5'-CATGCCCATAGTAGGAC-3') and antisense
(5'-CCATGTGCCATGTACAG-3') primers (34). BVDV and BVDV-negative cells (for a negative control) were kindly provided by
Julia Ridpath, USDA Agricultural Research Laboratory, Ames, Iowa.
Cloning and sequencing of PCR products.
PCR products were
separated by agarose gel electrophoresis, visualized by ethidium
bromide staining, excised, and purified using a DNA purification system
kit (Promega Co., Madison, Wis.). Amplicons were ligated into pCR 2.1 (Original TA cloning kit; Invitrogen, Carlsbad, Calif.), and plasmid
DNA was sequenced in both directions using primers complementary to the
T7 polymerase or the M13 universal primer sequences present in the
vector as previously described (43). Automated
fluorescent-dye terminator cycle sequencing was performed by the
University of Iowa DNA Core Facility (automated DNA sequencer 373A;
Applied Biosystems, Foster City, Calif.).
Construction of full-length GBV-C cDNA.
Based on conserved
sequences throughout the GBV-C genome, a series of primers which
contained suitable restriction sites in their overlapping sequences
were designed. Primer sets that generated products were used to prepare
the full-length clone. Table 1 and Fig.
1 demonstrate the six primer sets and
fragments generated in this study. The rapid amplification of cDNA ends
(RACE) method was used to prepare the 5'- and 3'-terminal RNA (GIBCO
BRL, Rockville, Md.). The eight DNA fragments were ligated into a
full-length clone by using the restriction enzymes in either the
overlapping sequences or in the vector DNA.

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FIG. 1.
Cloning strategy for GBV-C full-length clone. (A)
Schematic presentation. The full-length GBV-C cDNA sequence is at the
top. Each box beneath the full-length sequence represents a cDNA
amplified by RT-PCR used to make the full-length clone. The 5' and 3'
ends were generated using the RACE methods. The specific primer sets
used for RT-PCR are shown in Table 1. (B) RNA transcripts from GBV-C
and HCV full-length cDNA. The RNA size marker is depicted.
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RNA transcription and transfection.
Ten micrograms of GBV-C
full-length DNA in pCR 2.1 was digested into linear DNA by
SpeI and transcribed using T7 RNA polymerase (Promega) for
1 h at 37°C. An infectious HCV clone (22) was kindly
provided by Charles Rice, Washington University, St. Louis, Mo.
(GenBank accession no. AF009606). This clone was digested with
SpeI, and RNA transcription was carried out in the same
fashion. To eliminate plasmid DNA sequences, RQ1 RNase-free DNase (1 U/µg) digestion of template DNA was completed for 15 min at 37°C.
RNA transcripts were purified by chloroform extraction and ethanol precipitation. RNA from transcription reactions was denatured with
formamide and formaldehyde and analyzed on a 1% agarose-formaldehyde gel. Transcribed RNA in DEAE-dextran (1 mg/ml in Hanks balanced salt
solution) was added to washed PHA-, IL-2-, and
lipopolysaccharide-stimulated PBMCs or MOLT-4 cells (106),
and the cells were incubated for 30 min at 36°C in 5%
CO2. RPMI 1640 supplemented with PHA, IL-2, and 10% FCS
was added, and the cells were incubated at 36°C for 6 h with
gentle rocking. After 6 h the medium was removed and the cells
were washed twice and incubated in RPMI 1640 (10% FCS) at 36°C in
5% CO2. Fresh PHA- and IL-2-stimulated donor cells (4 × 106) were added each week to the cultured cells. After 4 weeks, cell culture supernatant from the transfected cells was used to
inoculate fresh PBMCs (2 × 106/ml) for at least four
consecutive passages.
Negative-strand GBV-C RT-PCR.
For detection of GBV-C
antisense RNA, cDNA synthesis was performed with an oligonucleotide
primer containing a sequence unrelated to GBV-C
(5'-TCATGGTGGCGAATAAAAGCCCCAGAAACCGACGCC-3';
boldface letters indicate non-GBV-C sequences), as described by
others (24). cDNA synthesis was stopped by heating at 99°C
for 1 h, and samples were treated with 50 µg of RNase A/ml at
37°C for 30 min. Subsequent amplification of plus-sense RNA by
Taq polymerase used only the tag sequence
(5'-TCATGGTGGCGAATAA-3') for both the first round
of amplification and the nested PCR.
CD4 staining and flow cytometry.
Five days postinfection
with passage 5 culture supernatant, PBMCs (2 × 107)
were pelleted and resuspended in PBS containing 10% normal goat serum
for 30 min at 4°C prior to incubation with a mouse anti-CD4 antibody
or a murine isotype control antibody (10 µg/ml; Molecular Probes,
Eugene, Oreg.) for 45 min at 4°C. Anti-CD4 binding was detected
using Texas red-conjugated goat anti-mouse antibody (10 µg/ml;
Molecular Probes) for 45 min at 4°C. Between each step, cells were
washed two times with PBS. CD4-positive and CD4-negative cells were
sorted by flow cytometry (FACScan; Becton Dickinson, San Jose,
Calif.), and the two populations were collected for analysis.
Immunofluorescence.
Indirect immunofluorescence was
performed using a mouse monoclonal antibody against GBV-C E2 protein
(Biodesign, Saco, Maine). Two and five days postinfection with passage
5 virus, PBMCs were fixed with 3.7% formaldehyde for 15 min
(29) and then permeabilized in acetone at
20°C for 5 min
(3). Following blocking with 10% normal goat sera, the
cells were incubated for 1 h at room temperature with the
anti-GBV-C E2 antibody (10 µg/ml). After being washed, cells were
incubated for 1 h with fluorescein-Texas red-labeled goat
anti-mouse immunoglobulin G (5 µg/ml; Molecular Probes). Images were
recorded using confocal microscopy (519 nm; Zeiss, Jena, Germany) as
previously described (50). The ×100 objective was used to
produce these images.
Equilibrium centrifugation in sucrose.
Five hundred
microliters of either infected-cell culture supernatant fluid or the
infected-cell lysates was layered onto 10 ml of a 20 to 60% sucrose
gradient, and centrifugation was performed using a Beckman SW41 rotor
at 156,000 × g for 16 h at 4°C as previously described (51). Fourteen fractions (750 µl each) were
collected, RNA was extracted as described above, and GBV-C RNA was
detected by RT-PCR.
Nucleotide sequence accession number.
The nucleotide
sequence determined in this study has been assigned GenBank accession
no. AF121950.
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RESULTS |
To construct full-length GBV-C cDNA, nested RT-PCR was performed
on plasma RNA obtained from a GBV-C-infected individual using a variety
of oligonucleotide sets spanning the entire genome. Six primer sets,
which generated overlapping products containing restriction sites
useful for ligation, were identified (Table 1). These six fragments
started at nucleotide 25 and ended at nucleotide 9340. To identify the
5' and 3' ends of the genome, the 5' and 3' RACE methods were used.
Primers used for these reactions were located from nucleotide (nt) 284 to 305 (antisense) for 5' RACE and from nt 9085 to 9106 (positive
sense) for the 3' RACE. Each of these eight PCR amplification products
was cloned into the pCR 2.1 vector, and the nucleotide sequence was
determined (Fig. 1A). Following ligation of the eight fragments shown
in Fig. 1A, a clone containing the full-length GBV-C sequence of our
GBV-C isolate was obtained. All cloning sites were again sequenced to
exclude the possibility of cloning artifacts. Restriction digests of
this full-length cDNA in the pCR 2.1 vector were consistent with the
sequence data (data not shown).
GBV-C sequence analysis and comparison with GBV-B and HCV.
The
GBV-C sequence we obtained (AF121950) contained an ORF beginning at nt
351 and extending to nt 9080. This ORF is predicted to encode a
2,910-amino-acid polyprotein with a molecular mass of 314,548 Da. Based
on the predicted site of translation initiation at the start of the E1
protein (40), the polyprotein would be 2,677 amino acids
(molecular mass, 288,940 Da) if none of the putative "core" protein
upstream of E1 is translated. The complete GBV-C sequence of this
isolate was compared with those of 19 full-length human isolates
obtained by searching GenBank for complete GBV-C sequences (GenBank
accession no. AB320090, AB320091, AB320092, AB003293, AB008335, D90600,
D90601, D87255, D87272, D87708, D87709, D87710, D87711, D87712, D87713, D87714, D87715, U44402, and U63715). Nucleotide and predicted amino
acid sequences were aligned, and the evolutionary distances between
sequences were determined using the Jukes-Canter method (DNAMAN
software; Lynnon BioSoft Inc., Quebec, Canada). Twelve of these
sequences contained the complete 5' NTR and 3' NTR. A comparison of
these 12 isolates and our virus revealed 92.79% homology at the
nucleotide level.
A consensus predicted amino acid sequence was generated for these 20 GBV-C polyproteins (initiating translation at nt 554 of AF121950). Our
full-length clone and the consensus sequence differed at 115 amino
acids (4.3%). Based on the predicted protein-encoding regions of the
genome, most of the differences between our sequence and the consensus
sequence occurred in the NS5b (polymerase)-coding region (8%),
followed by the E1 region (7%), E2 (3.5%), NS4 (3.2%), NS2 (1.7%),
NS3 (1.5%), and NS5a (1.2%). The high rate of differences in the
predicted polymerase region was surprising; however, 40 of the 53 amino
acids differing from those of the consensus sequence occurred in the
carboxy-terminal 45 amino acids. If only the amino-terminal 518 amino
acids (of 563) had been evaluated, the AF121950 sequence would have
only varied from the consensus by 2.5%.
The complete 3' NTRs from 11 of the 21 full-length isolates studied
were available. There was 96.46% homology among these sequences, with
AF121950 containing no unique nucleotide sequences. Of the 312 nt
present in the 3' NTR, there was only a single nucleotide difference
between AF121950 and D90600. In both HCV and GBV-B, additional 3'-NTR
sequences were found at the 3' terminus subsequent to the original
publication of the sequence (7, 23). Because of this, we
were concerned that there may be additional sequences on the 3' end of
GBV-C. Consequently, we performed 3' RACE experiments eight times and
also carried out RT-PCR across 5'- to 3'-end-ligated viral RNA four
times in an attempt to identify additional sequences downstream of the
previously published 3' terminus. However, no additional nucleotide
sequences were identified.
Not surprisingly, a comparison of the 3' NTR of GBV-C with the 3' NTRs
of an infectious GBV-B clone and the infectious HCV clone we used as a
control demonstrated only 45.69% homology among the three sequences.
GBV-C was more closely related to GBV-B than HCV, and, of the two GB
hepatitis agents, GBV-C was more closely related to HCV than was GBV-B
(Fig. 2A). Although there was little sequence homology in this region, analysis of the predicted secondary structures demonstrated several similarities (Fig. 2B to D),
particularly at the extreme 3' end (RNAdraw, an integrated program for
RNA secondary structure calculation and analysis under 32-bit Microsoft Windows) (28). Although GBV-C does not have a polypyrimidine tract, the 3' end has three stem-loop structures, closely resembling the HCV and GBV-B 3' ends (Fig. 2B to D, respectively). In addition, the 5' end of this region bears remarkable structural resemblance to
that of GBV-B (Fig. 2B and C). The predicted free energies of the
GBV-C, GBV-B, and HCV 3'-NTR RNA structures (37°C) were
92.98,
109.01, and
55.08 kcal, respectively (28).

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FIG. 2.
(A) Phylogenetic relationship of the 3'-NTR sequences of
GBV-C, GBV-B, and HCV. (B to D) Predicted secondary structures of
3'-NTR regions for GBV-C (B), GBV-B (C), and HCV (D).
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Full-length GBV-C RNA is infectious in cell culture.
Full-length GBV-C transcripts were generated using T7 polymerase. For
comparison, full-length HCV RNA was also transcribed from an infectious
cDNA clone using T7 polymerase (22). RNA from the
transcription reactions was denatured with formamide and analyzed on a
1% agarose-formaldehyde gel (Fig. 1B). The GBV-C transcript was
approximately 9.4 kb, whereas the HCV transcript was approximately 9.7 kb. GBV-C and HCV RNA transcripts were transfected into PBMCs and
MOLT-4 and HepG2 cell lines. Mock-transfected cells (PBMCs
and MOLT-4) were also maintained under identical conditions. Following transfection, PBMCs were supplemented with fresh, PHA- and
IL2-stimulated PBMCs weekly for 4 weeks. Culture supernatants and cell
lysates were evaluated for GBV-C and HCV RNA using 5'-NTR primers in
RT-PCR experiments described in Materials and Methods. GBV-C RNA
was detected in all PBMC lysates and culture supernatants (Table
2). In contrast, HCV RNA was not detected
in PBMC cell lysates or culture supernatants after 3 weeks in culture
(Table 2). GBV-C and HCV RNA was detected in MOLT-4 cell lysates for 3 or fewer weeks and was detected in the culture supernatants for only
the week of transfection (Table 2). GBV-C and HCV RNA was not detected
in HepG2 cells within 1 week of transfection (data not shown) or in any
of the mock-transfected control cells (Table 2). Cell lysates and cell
culture supernatants from the GBV-C-transfected cells were used to
infect fresh PHA- and IL2-stimulated PBMC cultures for four passages,
and persistent GBV-C infection was demonstrated (Table 2). All
experiments were performed in duplicate or triplicate, and
transfections were repeated twice.
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TABLE 2.
Passage history of in vitro transfection of GBV-C and HCV
full-length RNAs and subsequent infection of PBMCs and
MOLT-4 cells
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To ensure that the GBV-C RNA detected in PBMC cell lysates and culture
supernatants did not represent amplification of residual plasmid DNA,
the cell lysate and supernatant fluids from which GBV-C RNA was
detected were amplified in PCR mixtures not containing MMLV RT. These
reactions did not produce PCR products (data not shown). In addition,
the relative concentrations of GBV-C positive- and negative-sense RNA
in culture supernatants and cell lysates were determined by terminal
dilution. Figure 3 demonstrates that a
low concentration of negative-strand RNA was present in culture supernatants following 7 days of infection (passage 5 virus), concomitantly with an increase in positive-strand RNA. The finding of
negative-strand GBV-C RNA in the culture supernatant was not expected.
However, negative-strand HCV RNA that is resistant to nucleases has
been found in the plasma of infected people, and this RNA is associated
with both membranes and the HCV glycoprotein E1 (39). Thus,
the negative-strand GBV-C RNA in the culture supernatants may represent
membrane-associated particles containing minus-strand RNA.
Negative-strand RNA was detected 14 days postinfection in the cell
lysates and increased on days 21 and 28. Cell culture supernatants
remained infectious for 12 serial passages (data not shown).

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FIG. 3.
Detection of GBV-C RNA in cell culture supernatants (A)
and cell lysates (B). Results are expressed as the relative GBV-C RNA
end point dilution titers per milliliter of initial culture supernatant
fluid. GBV-C RNA was detected 1 day following infection and after 7, 14, 21, and 28 days of culture.
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To ensure that the negative-strand RT-PCR methodology was strand
specific, sense and antisense control RNAs were generated by utilizing
clones produced by the ligation of amplicons shown in Fig. 1 into the
pCR 2.1 vector (amplicons 2 and 3; nt 1 to 2564; specific primers are
shown in Table 1) and by ligation in the reverse orientation (nt 2564 to 1). RNA was transcribed from each clone using T7 polymerase to
generate a positive- or negative-sense RNA control. Both transcription
products were treated with DNase and used as templates in RT-PCRs.
Figure 4 demonstrates that the
negative-sense-specific primer only generated products with the
negative-strand RNA template and was dependent on the presence of RT.
Because the standard RT-PCR is not specific for the positive or
negative strand (24), this reaction generated products from
both the positive-strand and negative-strand templates (Fig. 4).

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FIG. 4.
Validation of strand-specific RT-PCR methods.
Strand-specific RNA was transcribed from a plasmid carrying either nt 1 to 2564 or nt 2564 to 1 of GBV-C using T7 polymerase as described in
Materials and Methods. The negative-strand-specific RT-PCR with the Tag
internal primer generated 298-bp products only when the negative-strand
RNA template was used, not with the positive-strand template or the
water control (wc). Templates were tested neat (n) or were diluted
1:10. The standard RT-PCR is not specific for either strand, and 220-bp
products were generated with both positive- and negative-strand
templates. These reactions were dependent on the presence of RT. M, DNA
marker.
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To determine the immunophenotype of the PBMCs that supported GBV-C
replication, cells were infected with passage 4 supernatant and 5 days
later CD4-positive and CD4-negative cells were sorted by flow
cytometry. RNA was extracted from 1.5 × 105
CD4-positive cells and from 2 × 105 CD4-negative
cells, and GBV-C RNA was evaluated by RT-PCR in each cell population.
The relative concentrations of both positive- and negative-strand viral
RNA were 100-fold higher in CD4-positive cells than in CD4-negative
cells, indicating that 99% of viral replication in PBMCs occurred in
the CD4+ subset (Fig. 5).
This experiment was repeated, and cells were sorted for the
CD4+ CD3+ phenotype to ensure that the
CD4+ cells were of T-cell origin. In both experiments,
GBV-C negative-strand RNA synthesis was only seen in the
CD4+ CD3+ cells and the concentration of the
positive-strand RNA was 100-fold higher than in the CD4
cell population (data not shown).

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FIG. 5.
CD4-positive and CD4-negative cells were sorted and
collected by flow cytometry. RNA was extracted from 1.5 × 105 CD4+ or 2 × 105
CD4 cells, and the end point dilution titers (serial
log10 dilution titer shown above the agarose gels) of sense
and antisense GBV-C RNA were measured. FITC, fluorescein
isothiocyanate.
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To further confirm that GBV-C RNA detection in cells represented viral
replication, the fifth passage of cells with GBV-C infection was
evaluated by indirect immunofluorescence (IFA). Two and five days
postinfection, PBMCs were fixed and GBV-C E2 expression was assessed
using a commercial anti-E2 monoclonal antibody. Figure
6 demonstrates E2 expression in the
cytoplasm of cells from passage 4 (A and B) but not in that of
mock-infected cells (D). Figure 6C shows infected cells evaluated as
for Fig. 6A; however, an isotype control monoclonal antibody was used
in place of the GBV-C E2-specific monoclonal antibody. Five days postinfection, 5% of the PBMCs demonstrated GBV-C E2 expression by
IFA. Since 24 to 26% of the PBMCs were CD4+ in the cell
sorting experiments described above, approximately 20% of the
CD4+ T cells in our cultures were positive for E2 antigen
expression.

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FIG. 6.
GBV-C E2 expression in PBMCs. PBMCs were infected with
supernatant from the passage 4 cell culture supernatant fluid, and, 2 (A) and 5 days (B) postinfection, the cells were fixed and processed as
described in Materials and Methods. GBV-C E2 expression was detected
using a murine monoclonal anti-GBV-C E2 antibody as described in
Materials and Methods. The same cells (2 days postinfection) did not
show specific cytoplasmic fluorescence when evaluated with an isotypic
control antibody (C), nor did mock-infected PBMCs evaluated with the
GBV-C anti-E2 antibody as for panel A (D).
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GBV-C particle characterization.
In order to determine the
biophysical properties of GBV-C particles generated by the infectious
clone, concentrated supernatants and cell lysates from infected PBMCs
(fourth passage) were characterized by sucrose gradient centrifugation
(Fig. 7A and B, respectively). RNA was
extracted from each fraction, and GBV-C RNA was detected by RT-PCR. A
very-low-density (1.06 g/ml) particle type, similar to GBV-C particles
found in plasma (53), was identified in cell lysates (Fig.
7A). This particle type and an intermediate-density particle were
identified in supernatant samples (buoyant densities of 1.06 and 1.12 to 1.17 g/ml, respectively) (Fig. 7B).

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FIG. 7.
Cell lysate and concentrated cell culture supernatant
from the fourth passage of GBV-C in PBMCs were separated on a 20 to
60% (wt/wt) sucrose equilibrium gradient. The sucrose density of each
fraction in grams per milliliter is shown at the top. GBV-C RNA was
extracted from each fraction and detected by RT-PCR.
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To ensure that the PCR products observed in Fig. 7 represented GBV-C
and not BVDV contamination of the FCS, RT-PCR for BVDV and GBV-C was
performed on the concentrated cell culture supernatant. GBV-C RNA was
present in these preparations (6 × 105 copies/ml),
whereas no BVDV RNA was identified (data not shown). The BVDV RT-PCR
was able to amplify BVDV RNA from the positive-control virus RNA
preparation (data not shown).
 |
DISCUSSION |
Persistent GBV-C infection is remarkably common in humans, yet the
virus does not appear to cause chronic hepatitis (4, 5). In
fact, no specific disease has been clearly associated with GBV-C, and
the original association with posttransfusion hepatitis has not been
supported by subsequent human epidemiological studies (4, 5,
48) or experimental chimpanzee inoculation studies
(8). Nevertheless, GBV-C is the most closely related human
flavivirus to HCV, a major worldwide pathogen (35). In addition, GBV-C and HCV appear to utilize the low-density lipoprotein receptor for viral entry (1). Thus, comparison of GBV-C and HCV may provide insight into the reasons why HCV does not appear to
replicate as efficiently in cell culture as GBV-C and why GBV-C is
cleared more efficiently by the host immune response than HCV (17,
47, 48). Although several infectious HCV clones have been
described, all of these rely on inoculation of transcribed RNA into
susceptible primate species, and none were shown to be infectious in
vitro (7, 18, 22, 53, 54). Thus, these HCV infectious clones
have only limited application (6, 18, 22, 53, 54). The
construction of an infectious GBV-C cDNA clone that replicates in vitro
provides an important tool for studying the replication of human
Flaviviridae.
Several full-length GBV-C sequences have been submitted to GenBank;
however, our data are the first to demonstrate that full-length GBV-C
RNA transcripts are infectious in PBMC cultures. Our construction was
unlike most previous full-length HCV constructions in that we did not
attempt to produce a consensus sequence but rather produced the
authentic GBV-C amino acid sequence obtained from direct amplification
of viral RNA. The sequence of our virus isolate differs from the
consensus sequence by 4.3%, mostly in the carboxyl terminus of NS5b
and in the E1 and E2 structural proteins. Viral replication was
demonstrated by serial passage of culture supernatants, expression of
the envelope glycoprotein E2, RNA replication (positive- and
negative-strand RNA synthesis), and detection of the viral particles by
sucrose gradient centrifugation. Characterization of PBMC subsets
identified the CD4+ T cells as the cells supporting GBV-C
replication. Although early studies suggested that GBV-C replicates in
the liver, most reported studies indicate that GBV-C is not
hepatotropic (20, 24). Our inability to demonstrate
infection of HepG2 cells is consistent with this, although we were also
unable to demonstrate persistent replication in the CD4+
T-cell line (MOLT-4). Thus, host cell factors in primary cells may be
necessary for replication. Studies with primary hepatocyte cultures to
test this hypothesis are under way. Nevertheless, several studies have
found GBV-C replication in PBMCs, and the concentration of virus in
plasma relative to liver tissues suggests that the hepatocyte is not a
prominent source of virus (21). Taken together, these data
suggest that GBV-C may be lymphotropic.
Simons et al. demonstrated that the AUG codon encoding an amino acid at
the amino terminus of the putative E1 protein (AUG-554 in our isolate)
was capable of initiating translation, whereas the upstream AUGs were
not (40). In many isolates, the amino terminus of the
predicted GBV-C polyprotein is truncated or absent (25, 27,
32), and the frequency of polymorphisms in codon positions 1 and
2 in the upstream ORF suggests that the region is not a coding region
(32). Thus, it has been suggested that GBV-C may not have a
core protein (13). We previously showed that GBV-C particles
have densities and sedimentation characteristics in sucrose and cesium
chloride gradients similar to those of HCV (52) and
subsequently found particles approximately 65 nm in diameter with
50-nm-diameter nucleocapsid structures (51). In this study,
two GBV-C particle types were identified by sucrose gradient
sedimentation; they had densities of 1.07 and 1.18 g/ml, consistent
with virions and nucleocapsids respectively (52). Thus our
data support previous work identifying a nucleocapsid for GBV-C. The
truncation of the polyprotein upstream of the amino acid encoded by
AUG-554 would be abolished if most isolates did not contain a
single-nucleotide deletion at position 381. Given the fact that all
sequences have been produced thus far by nested RT-PCR, this deletion
may represent a polymerase artifact. Nevertheless, propagation of GBV-C
in culture should allow the production of sufficient virus for ultimate
characterization of the protein content of the GBV-C nucleocapsid. With
the exception of the 5'-NTR region, the remaining GBV-C sequences are
highly conserved among geographically diverse isolates. Although there
is less than 50% sequence homology in the 3'-NTR region among GBV-C,
GBV-B, and HCV, the predicted secondary structures of these viruses
bear striking similarities. GBV-C does not include a polypyrimidine tract but does have three stem-loop structures at the extreme 3' end
(Fig. 2). This suggests that the polypyrimidine regions of HCV and
GBV-B are not necessarily required for replication.
In summary, we have constructed the first GBV-C infectious cDNA clone.
We utilized an approach to produce the authentic GBV-C sequence, not a
consensus sequence, and our synthetic GBV-C RNA was capable of
initiating replication in vitro. Since GBV-C has much less sequence
divergence than HCV, this approach may not be as suitable for producing
HCV infectious clones; however, one group has reported construction of
an infectious "nonconsensus" HCV clone of genotype 1b
(6). Our data indicate that construction of a consensus
sequence is not a prerequisite for infectivity among the human
Flaviviridae. This system may serve as a model to compare
the replication requirements of GBV-C and HCV and may prove useful for
identifying blocks in HCV replication and for addressing questions of
pathogenesis. Since GBV-C appears to be a common, nonpathogenic,
persistent human virus, it could potentially serve as a gene therapy
vector for lifelong expression of foreign genes in humans. In addition,
recent data indicate that GBV-C viremia occurs in 35 to 40% of human
immunodeficiency virus (HIV)-infected individuals (31, 43),
and two clinical reports suggest that GBV-C viremia delays clinical
disease progression and mortality in HIV-infected people (26,
44). Since we demonstrated that GBV-C replicates in
CD4+ T cells in vitro, it is tempting to speculate that
GBV-C may cause viral interference with HIV, leading to delayed disease progression. Thus, the study of GBV-C-HIV interactions may lead to new
approaches to treat or prevent HIV infection.
 |
ACKNOWLEDGMENTS |
We thank Donna Klinzman and Donna Brashear for helpful
discussions, Lee Ann Allen for suggestions on immunofluorescence and confocal microscopy, Douglas LaBrecque and Mary Jean Perino-Phillips for assistance with clinical specimens, Charles Rice (Washington University) for kindly providing the full-length infectious HCV clone,
Judith Ridpath and Margaret Walker (USDA Agricultural Research Laboratory) for providing BVDV and BVDV-negative cells, and Donald Smith for helpful discussions regarding sequence and RNA structure analyses. The University of Iowa Flow Cytometry Core Program was utilized for these studies.
This work was supported in part by a Merit Review and a Career
Development Enhancement Award from the Veterans Administration (J.T.S.)
and NIH grant RO1 AA12671 (J.T.S.). In addition, W. Schmidt was
supported by NIH K08 A101460. The Central Microscopy Research Facility
received support from the University of Iowa Office of the Vice
President for Research.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Internal Medicine, SW 54, GH UIHC, 200 Hawkins Dr., The University of Iowa, Iowa City, IA 52242. Phone: (319) 356-3168. Fax: (319) 356-4600. E-mail: jack-stapleton{at}uiowa.edu.
 |
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Journal of Virology, October 2000, p. 9125-9133, Vol. 74, No. 19
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
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