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Journal of Virology, October 2000, p. 8953-8965, Vol. 74, No. 19
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Remodeling the Endoplasmic Reticulum by Poliovirus Infection and
by Individual Viral Proteins: an Autophagy-Like Origin for
Virus-Induced Vesicles
David A.
Suhy,1,
Thomas H.
Giddings Jr.,2 and
Karla
Kirkegaard1,*
Department of Microbiology and Immunology,
Stanford University School of Medicine, Stanford, California
94305,1 and Department of Molecular,
Cellular and Developmental Biology, University of Colorado,
Boulder, Colorado 803092
Received 2 May 2000/Accepted 14 July 2000
 |
ABSTRACT |
All positive-strand RNA viruses of eukaryotes studied assemble RNA
replication complexes on the surfaces of cytoplasmic membranes. Infection of mammalian cells with poliovirus and other picornaviruses results in the accumulation of dramatically rearranged and vesiculated membranes. Poliovirus-induced membranes did not cofractionate with
endoplasmic reticulum (ER), lysosomes, mitochondria, or the majority of
Golgi-derived or endosomal membranes in buoyant density gradients,
although changes in ionic strength affected ER and virus-induced
vesicles, but not other cellular organelles, similarly. When expressed
in isolation, two viral proteins of the poliovirus RNA
replication complex, 3A and 2C, cofractionated with ER membranes. However, in cells that expressed 2BC, a proteolytic precursor of the 2B
and 2C proteins, membranes identical in buoyant density to those
observed during poliovirus infection were formed. When coexpressed with
2BC, viral protein 3A was quantitatively incorporated into these
fractions, and the membranes formed were ultrastructurally similar to
those in poliovirus-infected cells. These data argue that
poliovirus-induced vesicles derive from the ER by the action of viral
proteins 2BC and 3A by a mechanism that excludes resident host
proteins. The double-membraned morphology, cytosolic content, and
apparent ER origin of poliovirus-induced membranes are all consistent
with an autophagic origin for these membranes.
 |
INTRODUCTION |
Infection with positive-strand RNA
viruses results in a range of membrane morphologies, many of which
involve complex membrane rearrangements. Cells infected with poliovirus
and other picornaviruses, for example, accumulate large quantities
of membranous vesicles 150 to 400 nm in diameter (Fig.
1) (5, 12). Most of
these vesicles are surrounded by double lipid bilayers (Fig. 1B
and C) (41), precluding a simple budding mechanism.
Instead, the presence of a double membrane suggests a wrapping
mechanism for vesicle formation akin to the process of cellular
autophagy, as suggested previously (12, 41). For all
positive-strand RNA viruses studied to date, the RNA synthesis
machinery is associated with the cytoplasmic surface of these
cytoplasmic membranes, and many of the proteins required for viral RNA
synthesis are membrane associated when expressed in isolation.

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FIG. 1.
Electron micrographs of COS-1 cells preserved by
high-pressure freezing show the ultrastructure of uninfected cells and
cells infected with poliovirus for 4 h at 37°C. (A) Uninfected
cell. N, nucleus; G, Golgi. Bar = 1 µm. (B) Infected cell;
bar = 1 µm. (C) Infected cell; bar = 0.2 µm. (D)
Immunostaining of infected cell to identify poliovirus 2C epitopes
using 15-nm gold particles conjugated to secondary antibodies. Arrows
indicate double-membraned vesicles. Bar = 0.3 µm.
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Studies of several different positive-strand RNA viruses, including
costaining and coisolation of viral and cellular proteins known to be
residents of individual organelles, have diversely implicated the
endoplasmic reticulum (ER), trans-Golgi endosomes, or
lysosomes as likely sources for virally induced membranes. For
example, Semliki Forest virus has long been thought to replicate on
cellular endosomes modified during viral infection (19), and
cowpea mosaic virus replication complexes colocalize with ER marker
proteins (9). For poliovirus-infected cells, although images
consistent with the budding of these vesicles from ER membranes have
been reported (5), immunoisolation of the vesicles showed the presence of protein markers from the entire secretory apparatus, including ER, trans-Golgi, and lysosomal markers
(41). It was concluded that the poliovirus-induced vesicles
either derive from a pooled compartment or acquire many of their
cellular markers after their formation (41).
To identify viral proteins which can, in isolation, cause
membrane rearrangements, individual proteins from several
positive-strand RNA viruses have been expressed in a variety of
cell types. For poliovirus, the viral 2C protein, a 329-amino-acid
membrane-associated protein with RNA-dependent ATPase
activity (31, 38), is required for RNA replication and was
shown to cause both membrane vesiculation and the formation of
multilamellar structures when expressed in isolation (1,
10). When the 426-amino-acid precursor protein, 2BC, was
expressed in human cells, a greater amount of vesiculation was
observed, which was morphologically more consistent with the pattern
seen in poliovirus-infected cells. The more authentic ultrastructural
changes were seen only when 2B and 2C were covalently linked (1,
10, 48).
An 87-amino-acid protein, 3A, when expressed in isolation, associates
with membranes of the ER, as shown by immunoelectron microscopy
(13) and by coimmunofluorescence (14). Near the C
terminus of the 3A coding region is a hydrophobic region whose integrity is required for membrane association in vitro (49) and is presumed to anchor 3A and 3AB to cellular membranes during poliovirus RNA synthesis. Membrane-associated 3AB binds directly to the
poliovirus RNA-dependent RNA polymerase (22), stimulating protease activity of the polymerase precursor 3CD (25), and thus is thought to anchor 3D polymerase in the RNA replication complexes. Either the 22-amino-acid 3B or its precursor 3AB serves as
the primer for RNA synthesis (33). Although 3A protein
expression causes the inhibition of ER-to-Golgi protein traffic
(14) and dramatically alters ER ultrastructure
(13), these morphological changes do not in
themselves resemble those observed in poliovirus-infected cells.
Autophagic vacuoles form in normal cells in response to nitrogen or
amino acid starvation. Membranes thought to be derived from the ER
(16) wrap around small pools of cytoplasm, forming immature
autophagic vacuoles. The lumen of these double-membraned, immature
autophagic vacuoles contains material morphologically indistinguishable
from cytoplasm, sometimes including intact mitochondria or other small
organelles. The evidence that autophagic vacuoles form from the ER has
been predominately ultrastructural (16). Biochemical
identification of the origin of the limiting membranes in these
structures has proven difficult, possibly because these membranes are
relatively depleted for protein markers (37, 45). However,
those proteins present in immature autophagic vacuoles include the ER
lumenal proteins calreticulin, protein disulfide isomerase (PDI), ER60
protease, and BiP (51). As the double-membraned autophagic
vacuoles mature, they acquire from vesicles in the endosomal and
lysosomal pathway protein markers and lumenal contents such as
-hexaminidase (17). The degradation of the inner lipid bilayer marks the transition to single-membraned, mature autophagic vacuoles (17). Poliovirus-induced vesicles resemble immature autophagic vacuoles in that they are frequently bounded by double membranes, bear markers from the late as well as early secretory pathway, and contain lumenal material indistinguishable from cytoplasm, sometimes including cytoplasmic organelles such as mitochondria (12, 41).
Here, we provide biochemical and ultrastructural evidence for the
effects of expression of individual viral proteins on host cytoplasmic
membranes. Density gradient centrifugation was used to identify the
host membranes with which the individual viral proteins 2C, 2BC, and 3A
associate when expressed in isolation and during poliovirus infection.
Corresponding ultrastructural studies of infected cells and cells
transfected with individual viral proteins were performed using
high-pressure freezing and cryosubstitution to preserve membrane
morphology (reviewed in reference 11). The combined
actions of 2BC and 3A were found to mimic both the biochemical
and ultrastructural alterations in poliovirus-infected cells,
forming structures consistent with an autophagic mechanism for
the formation of the virus-induced vesicles from the ER.
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MATERIALS AND METHODS |
Cell culture and virus infection.
COS-1 cells were cultured
as monolayers in Dulbecco's modified Eagle's medium supplemented with
10% calf serum, 5 mM glutamine, and 30,000 U of
penicillin-streptomycin (Life Technologies, Inc., Gaithersburg, Md.)
per liter at 37°C in a 5% CO2 incubator. Wild-type poliovirus type 1 Mahoney was used to infect cells as previously described (30). All infections were performed at a
multiplicity of 50 PFU per cell. Virus titers were determined by plaque
assays on COS-1 cells.
Plasmids and DNA transfections.
The pLINK-based DNA plasmids
used in these experiments have been previously described
(14). Briefly, these constructs, which are under the
transcriptional control of the simian virus 40 late promoter, contain
an internal ribosomal entry site followed by the coding sequence for
the vesicular stomatitis G protein (VSV-G). In the parental pLINK
plasmid, only VSV-G is produced. No effect of VSV-G expression from
pLINK was observed in either ultrastructural or gradient fractionation
experiments (data not shown). The dicistronic pLINK derivatives used
here encode poliovirus protein 2B, 2C, 2BC, or 3A in the first cistron
as well as VSV-G in the second cistron. DNA transfections were
performed using Lipofectamine or Lipofectamine Plus reagents as
described by the manufacturer (Life Technologies). Twelve micrograms of
each plasmid DNA was used for transfection of each 150-mm-diameter
plate of 4 × 106 COS-1 cells. Following a 48-h
incubation period, cells were harvested and either used in biochemical
fractionation experiments or prepared for electron microscopic
analysis. The 48-h incubation time point yielded ultrastructural
results similar to results of 24-h incubations for those proteins
tested (data not shown), but expression levels of the viral proteins
were higher at the later time point, which facilitated biochemical analysis.
Biochemical fractionation.
Cells were infected with
poliovirus at 37°C for 4 h unless otherwise specified or
transfected for 48 h at 37°C with the pLINK-based DNA plasmids.
Each sample of 1.5 × 108 infected, transfected, or
control cells was scraped into phosphate-buffered saline (PBS),
collected by low-speed centrifugation, and resuspended in 1 ml of
homogenization buffer (0.25 M sucrose, 5 mM morpholinepropanesulfonic acid [pH 7.4]). The plasma membranes were disrupted by pressure filtration through 14-µm-pore-size polycarbonate track-etch membranes (Osmonics, Livermore, Calif.), a technique useful in preserving the
integrity of organelles during cell lysis (46). The low-salt conditions used were found to be optimal for the separation of cytoplasmic organelles from the poliovirus-induced membranes (Fig. 2
and 8) and did not lead to nonspecific aggregation, as evidenced by the
successful separations achieved. The filtrate was centrifuged twice for
10 min at 4°C and 1,000 × g to sediment intact
cells, nuclei, and large sheets of plasma membranes. The resultant
supernatant was loaded onto 20 ml of self-forming Percoll density
gradient medium (Pharmacia Biotech, Piscataway, N.J.); the Percoll
concentrations indicated for each experiment were achieved by diluting
stock isotonic Percoll (9 parts Percoll, 1 part 2.5 M sucrose
[vol/vol]) with homogenization buffer. For some experiments, both the
homogenization buffer and the Percoll suspension medium were adjusted
to 60 mM KCl. The samples were centrifuged in a Beckman type 60 Ti
rotor at 25,000 rpm for 23 min at 4°C. Density marker beads
(Pharmacia Biotech) were used to calibrate the initial gradients (data
not shown).
Following centrifugation, 40 individual 0.5-ml fractions were collected
from each sample using a density gradient fractionator
(Brandel,
Gaithersburg, Md.); each fraction was adjusted to 1
mM
phenylmethylsulfonyl fluoride and 0.1% Triton X-100. For direct
analysis of lysosome-derived material, equivalent volumes of each
fraction were measured for

-hexosaminidase activity (
36).
Briefly,
200 µl of substrate buffer (50 mM sodium citrate [pH 4.8],
0.1%
Triton X-100, 1.7 mg of
p-nitrophenol-

-
N-acetylglucosamide [Sigma,
St. Louis, Mo.] per ml) was added to 100 µl of each sample. After
incubation for 60 min at 37°C, the reaction was developed by adding
0.9 ml of 0.15 M glycine (pH 10.8). Release of the
p-nitrophenol
product was measured by increased absorbance
at 412
nm.
For immunoblot analysis, equivalent volumes of each sample were
subjected to centrifugation at 100,000 ×
g at 4°C
for 45 min
in a Beckman TLA-100 rotor to pellet the Percoll resin. The
proteins
in the resultant supernatants were precipitated
(
55), resuspended
in a minimal volume, and displayed by
glycine-sodium dodecyl sulfate
(SDS)-polyacrylamide gel electrophoresis
(PAGE) or tricine-SDS-PAGE
(
40). The proteins were then
transferred to Immobilon-P polyvinylidene
fluoride membranes
(Millipore, Bedford, Mass.), which were probed
directly using
antibodies generated against specific viral proteins
or to resident
marker proteins of cellular organelles. To identify
the distribution of
poliovirus proteins, anti-2C monoclonal antibodies,
kindly provided by
K. Bienz and D. Egger (University of Basel,
Basel, Switzerland), were
used at a dilution of 1:1,500, and anti-3A
monoclonal antibodies
(
13) were used at a dilution of 1:50.
Fractions containing
proteins from the ER were identified either
by an anticalnexin
polyclonal serum (Stressgen, Victoria, British
Columbia, Canada) at a
dilution of 1:4,000 or by anti-p63 monoclonal
antibodies, kindly
provided by H.-P. Hauri (University of Basel).
Anti-p115 (7DI)
monoclonal antibodies, kindly provided by G. Waters
(Princeton
University) and used at a dilution of 1:20,000, and
anti-1,4-galactosyltransferase polyclonal serum, kindly provided
by E. Berger (Universität Zurich, Zurich, Switzerland) and used
at a
dilution of 1:250, were used to identify Golgi-containing
fractions.
Mitochondrial fractions were tracked using anti-mitochondrial
HSP70
(mtHSP70) monoclonal antibodies, kindly provided by S. Pierce
(Northwestern University), at a dilution of 1:500. Finally, endosomes
were traced with anti-Rab9 monoclonal antibodies, kindly provided
by S. Pfeffer (Stanford University), at a dilution of 1:100. Anti-mouse
and
anti-rabbit secondary antibodies, conjugated to alkaline phosphate
(Zymed, South San Francisco, Calif.), were used at 1:4,000. Enhanced
chemifluorescence (Amersham, Arlington Heights, Ill.) coupled
with
PhosphorImager analyses utilizing ImageQuant (version 4.0)
software
(Molecular Dynamics, Sunnyvale, Calif.) was used to generate
signals
that were linearly responsive to protein concentrations
and to quantify
the relative level of each protein marker. The
results are presented as
the percentage of the specific protein
found within each fraction; the
total amount of the protein of
interest was determined by summing the
enhanced chemifluorescence
signals from the 40 gradient
fractions.
High-pressure freezing and freeze-substitution.
For
cryofixation and electron microscopy, transfected, infected, or
untreated COS-1 cells from one 100-mm-diameter plate were washed twice
with PBS, removed from the plates by treatment with trypsin, and
collected by centrifugation. The cell pellet was resuspended in a
minimal volume of 0.15 M sucrose in PBS. Aliquots of the cell slurry
were frozen in a Balzers HPM 010 high-pressure freezing apparatus as
described previously (41) and stored in liquid nitrogen. For
observation of cellular morphology, samples were freeze-substituted in
0.1% tannic acid in acetone at
80°C, rinsed in acetone, then
warmed to
20°C in the presence of 2% osmium tetroxide in acetone
for 16 h, and incubated at 4°C for 4 h. After being rinsed
in acetone at 4°C, samples were embedded in Epon-Araldite resin. Thin
sections were stained with 2% uranyl acetate and lead citrate and then
imaged at 80 kV in a JEOL 100C or Philips CM10 electron microscope.
For immunostaining, high-pressure-frozen samples were
freeze-substituted in 0.1% glutaraldehyde-0.05% uranyl acetate in
acetone
and then embedded in Lowicryl K4M. Sections were mounted on
Formvar-coated
nickel grids and immunolabeled with either anti-2C or
anti-3A
monoclonal antibodies. Grids were floated on a drop of blocking
solution in PBS that contained primary antibody as described previously
(
13,
41). Mouse monoclonal primary antibodies were detected
with goat anti-mouse secondary antibodies coupled to gold particles
15 nm in diameter (Ted Pella, Inc., Redding, Calif.).
 |
RESULTS |
Poliovirus-induced vesicles do not cofractionate with ER, Golgi,
lysosomal, or mitochondrial protein markers.
Buoyant density
gradients were used to determine the proportion of protein markers from
ER, Golgi, lysosomes, and mitochondria found in
poliovirus-induced vesicles and in subcellular organelles during
poliovirus infection. Separation of cellular components by
centrifugation in polydisperse solutes such as Percoll is based on a
combination of sedimentation rate and isopycnic effects, with the
density of the organelles being the most critical parameter for
separation (43). To fractionate the cytoplasmic organelles in uninfected and in poliovirus-infected COS-1 cells, plasma membranes were disrupted by pressure filtration homogenization (46);
nuclei and intact cells were removed by low-speed centrifugation, and the postnuclear supernatants were fractionated on Percoll gradients. Fractions were collected and assayed either enzymatically or by SDS-PAGE followed by transfer to membranes for Western blot analysis. Membranes associated with poliovirus RNA replication complexes were
identified using antibody to poliovirus protein 2C, known to be
associated with the virus-induced vesicles and with active RNA
replication complexes (7). The poliovirus 2C-containing fractions were narrowly distributed upon fractionation in 20% stock
isotonic Percoll (Fig. 2A), although the
fractions that contained the poliovirus RNA replication complexes
became more disperse at lower Percoll concentrations (Fig. 2B and C).
Thus, the range of buoyant densities displayed by the
poliovirus-induced vesicles is narrow and Percoll gradients can be
efficiently used in their purification.

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FIG. 2.
Density gradient analyses of the distributions of
subcellular membranes of uninfected and poliovirus-infected cells.
Following infection with poliovirus for 4 h, the plasma membranes
of COS-1 cells were disrupted and the cytoplasmic organelles were
separated on Percoll density gradients. Individual fractions (lightest
fractions are at the left) were collected and either tested for
enzymatic activity or analyzed by immunoblot assays to identify
poliovirus 2C protein (A, B, and C), ER marker p63 (A), Golgi marker
p115 (B), and mtHSP70 [HSP70m(mito)] (C). -Hexosaminidase activity
assays were used to identify fractions derived from lysosomes [ -Hex
(Lyso)] (C). Stock isotonic Percoll concentrations were 20% (A) and
9.5% (B and C).
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To determine the location of ER membranes in Percoll gradients, the
relative amount of the ER resident protein p63 (
42)
in each
fraction was determined by quantitative immunoblot analysis
(Materials
and Methods). Although some initial controversy surrounded
the
intracellular location of p63, recent data have confirmed
its ER
localization (
42). The distribution of p63 was similar
in
mock-infected and poliovirus-infected cells (Fig.
2A). In the
20% stock isotonic Percoll gradient shown in Fig.
2A, the peak
of
poliovirus-induced vesicles displayed a lower buoyant density
than the
p63-containing fractions. Therefore, the majority of
the virus-induced
vesicles do not cofractionate with ER
membranes.
Immunoblot analysis using an antibody generated against p115
(
53) was used to determine the distribution of Golgi
membranes
in buoyant density gradients. In both poliovirus-infected and
uninfected cells, p115 was widely scattered across 9.5% stock
isotonic
Percoll gradients (Fig.
2B). To address the concern that
this diffuse
distribution might have resulted from the removal
of p115, a peripheral
membrane protein, from the Golgi membranes
during extraction, the
fractionation of another Golgi marker,
1,4-galactosyltransferase
(
54), was tested and found to display
an identical
distribution in this gradient (data not shown). Despite
the diffuse
distribution of the Golgi membranes in these Percoll
gradients, it is
clear that these membranes were not consumed
by the formation of the
poliovirus-induced membranes, and the
poliovirus-induced vesicles did
not cofractionate with the majority
of the Golgi
membranes.
A lysosomal origin for poliovirus-induced vesicles would be consistent
with immunoelectron microscopic analysis that showed
staining of
poliovirus-induced vesicles with LAMP-1, a marker
of endosomes and
lysosomes (
41), and with the documented increases
in
lysosomal enzymes in the cytoplasm of poliovirus-infected cells
(
21). All fractions from uninfected and virus-infected cells
were assayed for

-hexosaminidase activity (Fig.
2C) to identify
the
lysosome-containing fractions in 9.5% stock isotonic Percoll
gradients. The discrete peak of

-hexosaminidase activity
observed
in uninfected cells was not significantly altered after 4 h of
poliovirus infection, and very little overlap was seen between
the

-hexosaminidase- and poliovirus 2C-containing
fractions.
Mitochondria form an unlikely source for the poliovirus-induced
vesicles, and no disruption of mitochondria has been reported
during
poliovirus infection. Therefore, as a representative organelle
that
should not be disrupted during poliovirus infection, the
fractionation
of mitochondria in 9.5% stock isotonic Percoll gradients
was
determined by immunoblot analysis using antibodies generated
against
the mtHSP70 (
20). In mock- and poliovirus-infected cells,
mitochondria formed a discrete peak that cofractionated with
lysosomes
(Fig.
2C). The mitochondrial peak was not disrupted by
poliovirus
infection, and the majority of the poliovirus 2C-containing
membranes
did not contain the GRP75 mitochondrial
marker.
Thus, the poliovirus-induced vesicles are either generated de novo,
formed from a subcellular compartment whose resident proteins
were not
tested, or generated from one of the tested organelles
(ER, Golgi,
lysosomes, or mitochondria) by a mechanism that excludes
at least some
of the resident proteins. To test the latter possibility,
we sought to
determine whether the characteristic biochemistry
and
intracellular morphology of poliovirus-infected cells could
be
mimicked by the expression of a subset of the viral proteins
and, if
so, to determine their intracellular
localization.
Viral proteins 2C and 3A fractionate as resident ER proteins and
alter ER morphology when expressed in isolation.
Previous studies
have shown that the ER membranes of cells that expressed the 3A protein
displayed a characteristic swollen and distended morphology by electron
microscopy (13). Immunoelectron microscopy demonstrated that
3A protein localizes to these swollen membranes (13).
Coimmunofluorescence of the ER marker PDI secretory cargo (
-1
protease inhibitor) whose transport was disrupted by 3A function, and
3A protein showed that the swollen membranes that contain both 3A and
arrested secretory cargo are ER (13, 14). To examine
the distribution of 3A protein in Percoll gradients, COS-1 cells were
transfected with a plasmid that expressed 3A protein from a dicistronic
RNA that also encoded VSV-G (14). Cell extracts were
prepared and fractionated on 12% stock isotonic Percoll gradients, the
concentration found to be optimal for separation of the organelles of
interest. The fractions that contained 3A protein were identified by
immunoblot analysis. The positions of ER, Golgi, lysosomal, and
mitochondrial membranes were also determined, although only a subset of
these distributions is shown for simplicity. In both transfected and
untransfected COS-1 cells, the ER marker calnexin was dispersed over
many fractions; 3A protein in the transfected cells cofractionated with
the ER fractions of the lightest buoyant density (Fig.
3A). The expression of 3A protein did not
perturb the distribution of ER membranes in Percoll gradients compared
to untransfected cells (data not shown); because only 30 to 40% of the
cells were transfected, a subtle disturbance in the transfected cells
may not have been detectable. Electron microscopy was performed on
populations of cells that were transfected with 3A-expressing plasmids.
Approximately 40% of the cells displayed the characteristic morphology
reported previously to be caused by 3A expression (Fig. 3B)
(13).

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FIG. 3.
Density gradient and ultrastructural analysis of COS-1
cells that expressed poliovirus 3A protein. (A) Cytoplasmic membranes
from cells expressing 3A protein were separated on a 12% stock
isotonic Percoll; proteins in each fraction were detected by
immunoblotting using antibodies directed against the poliovirus 3A
protein, calnexin (ER), and mtHSP70 [HSP70m(mito); mitochondria];
lightest fractions are at the left. The distribution profiles of Golgi
and lysosomal proteins did not vary significantly from the patterns
displayed in Fig. 2 and were not included for simplicity. (B)
Ultrastructure of COS-1 cell expressing poliovirus 3A protein. N,
nucleus. Bar = 1 µm.
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To test whether the expression of poliovirus 2C protein altered the
ultrastructure of 3A-expressing cells, and to localize
2C protein
expression in the presence of 3A protein, COS cells
were cotransfected
with plasmids that expressed 2C and 3A proteins.
When cytoplasmic
extracts of these transfected cells were separated
on 12% stock
isotonic Percoll gradients, 2C and 3A cofractionated
with each other as
well as with the ER-containing fractions of
the lightest buoyant
density (Fig.
4A).

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FIG. 4.
Density gradient and ultrastructural analysis
of COS-1 cells that expressed poliovirus proteins 2C and 3A. (A)
Cytoplasmic membranes from cells expressing 2C and 3A proteins were
separated on a 12% stock isotonic Percoll gradient; proteins in each
fraction were detected by immunoblotting using antibodies directed
against poliovirus 2C, poliovirus 3A, calnexin (ER), and mtHSP70
[HSP70m(mito) mitochondria]; lightest fractions are at the left. (B)
Electron microscopy reveals the effects of 2C and 3A expression on the
ultrastructure of COS-1 cells. N, nucleus. Bar = 1 µm. (C)
Section labeled with 15-nm gold particles coupled to secondary
antibodies. The primary antibody was directed against poliovirus
protein 2C. Bar = 0.5 µm.
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Electron micrographs of cells that express both 2C and 3A (Fig.
4B)
showed that, like in 3A-expressing cells, the ER membranes
were
distended and the lumen was highly enlarged. Unlike the majority
of the
ER membranes in 3A-expressing cells, the ER in cells that
expressed
both 2C and 3A showed apparent invaginations, so that
the swollen
membranes encircled cellular material similar in morphology
and
electron density to cytosol. Immunostaining of sections prepared
for
electron microscopy showed that the swollen ER membranes
contained
2C protein (Fig.
4C). Often, these cells also contained
clusters
of large, clear, single-membraned vesicles. No small
double-membraned
vesicles such as those seen in poliovirus-infected
cells were
observed.
Viral protein 2BC in isolation forms membranes of the buoyant
density observed in poliovirus-infected cells.
Previous electron
microscopic studies of cells that express individual poliovirus
proteins have suggested that the expression of poliovirus 2BC protein
mimics the morphology of poliovirus-infected cells (1, 10,
48). To test the effect of 2BC protein expression on the
biochemical distribution of cytoplasmic membranes in Percoll gradients, COS-1 cells were transfected with a DNA plasmid that expressed 2BC and cytoplasmic extracts were fractionated on a 12%
stock isotonic Percoll gradient (Fig.
5A). The virally encoded protease
responsible for cleavage of the 2BC protein was not expressed in the
transfected cells; therefore, only the 48 kDa 2BC protein, and not its
final processing products, was detected by immunoblot analysis (data
not shown). Like the membranes from poliovirus-infected cells, but
unlike cells expressing 3A and 2C, the peak of the 2BC-containing
membranes displayed a lighter buoyant density, centered at fraction 11, than even the lightest of the ER-containing fractions, centered at
fraction 13 (Fig. 5A). Therefore, 2BC expression in isolation was
sufficient to generate membranes of buoyant densities similar to those
observed in poliovirus-infected cells.

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FIG. 5.
Density gradient and ultrastructural analysis
of COS-1 cells that expressed poliovirus 2BC protein. (A) Cytoplasmic
membranes from cells expressing 2BC protein were separated on a 12%
stock isotonic Percoll gradient; proteins in each fraction were
detected by immunoblotting using antibodies directed against poliovirus
2C, calnexin (ER), and mtHSP70 [HSP70m(mito) mitochondria]; lightest
fractions are at the left. (B) Ultrastructure of COS-1 cells
transfected with a 2BC-expressing plasmid. G, Golgi. Bar = 2 µm.
(C) An immunostained section using anti-2C antibodies and secondary
antibodies coupled to 15-nm gold particles. Bar = 0.5 µm.
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Expression of 2BC in COS-1 cells induced the formation of at least two
distinct membrane morphologies, as visualized by high-pressure
freezing
and freeze-substitution followed by electron microscopy.
The
predominant consequence of 2BC expression was the formation
of clusters
of empty vacuoles limited by a single membrane, usually
in
peripheral regions of the cell (Fig.
5B and C). These membranes
contained a high concentration of the 2C epitope. A few
transfected
cells showed small numbers of a second class of
vesicle, morphologically
more reminiscent of those formed during
poliovirus infection (Fig.
5C). As in poliovirus-infected cells, these
vesicles were limited
by double membranes, had more intensely stained
lumen, and were
clustered. However, even in these cells, the vast
majority of
the 2BC protein was associated with the empty vacuoles.
Expression
of 2BC in the absence of other poliovirus proteins resembled
poliovirus
infection in that it caused the formation of membranes of
lighter
buoyant density than ER but induced the formation of
morphologically
similar membranes to only a very limited
extent.
2BC expression causes 3A protein to change its localization from
the ER to a fraction with a lower buoyant density.
The effect of
coexpression of 2BC and 3A was tested in an attempt to mimic more
closely the biochemistry and ultrastructure of poliovirus-infected
cells. COS-1 cells were cotransfected with plasmids that expressed 2BC
and 3A, and cytoplasmic extracts were displayed on 12% stock isotonic
Percoll gradients (Fig. 6A). As in Fig.
5A with 2BC alone, 2BC and 3A coexpression led to the formation of a
peak of lighter buoyant density than the calnexin-containing ER
membranes. In addition, the vast majority of the 3A protein in these
transfected cells was also detected in this light fraction. Therefore,
2BC expression was sufficient to recruit the 3A protein quantitatively
into membranes similar in buoyant density to those induced during
poliovirus infection, even though 3A colocalized to ER membranes when
expressed in isolation (Fig. 3) (13).

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FIG. 6.
Density gradient and ultrastructural analysis
of COS-1 cells cotransfected with plasmids that encode the poliovirus
2BC and 3A proteins. (A) Cytoplasmic membranes from cells expressing
2BC and 3A proteins were separated on a 12% stock isotonic Percoll
gradient; proteins in each fraction were detected by immunoblotting
using antibodies directed against poliovirus 2C, poliovirus 3A,
calnexin (ER), and mtHSP70 [HSP70m(mito) mitochondria]; lightest
fractions are at the left. (B) Ultrastructure of COS-1 cells
transfected with 2BC- and 3A-expressing plasmids. N, nucleus. Bar = 1 µm. (C) Higher-resolution image of a section of a 2BC- and
3A-transfected cell. Bar = 0.2 µm. (D) A 2BC- and 3A-transfected
cell that was immunostained with antibodies directed against the 2C
protein. Secondary antibodies were coupled to 15-nm gold particles.
Arrows indicate double-membraned vesicles. Bar = 0.5 µm.
|
|
The morphology of cells that express 2BC and 3A resembles that of
poliovirus infection.
Ultrastructural analysis of COS-1 cells
transfected with the 2BC and 3A expression plasmids revealed
morphologies highly reminiscent of poliovirus infection, with both
small clustered vesicles and large clear vacuoles formed (Fig. 6B).
Higher magnifications revealed that many of the smaller membranous
vesicles formed contained double membranes and cytoplasmic lumen (Fig.
6C), were similar in size and shape to the vesicles induced during
poliovirus infection (Fig. 1B and C), and tended to be clustered in the
centrosomal regions of the transfected cells. As in poliovirus
infection (Fig. 1D), the 2C epitopes were found predominantly on
or in the immediate vicinity of the double-membraned vesicles
(Fig. 6D). Although empty vacuoles such as those found during
expression of 2BC alone (Fig. 5B) were observed, they were not heavily
labeled with the anti-2C antibody (Fig. 6D). Therefore, the vesicles
induced by coexpression of 3A and 2BC resembled the vesicles induced
during poliovirus infection more closely than the vesicles induced by expression of 2BC alone.
3A protein colocalizes with 2C in fractions less dense than ER
during poliovirus infection.
To determine whether, during
poliovirus infection, viral 3A protein relocalized from the ER to
lighter, 2BC-containing fractions as it did during coexpression with
2BC protein, the cytoplasmic organelles from poliovirus-infected COS-1
were separated on 12% stock isotonic Percoll gradients. The
3A-containing fractions completely colocalized with the 2C-containing
fractions at a buoyant density lighter than that of the
calnexin-containing ER fractions in extracts from infected cells
(Fig. 7A). In these fractions, 2C, 3A,
and their precursors 3AB and 2BC were all present (data not shown), as
expected for poliovirus replication complexes (6, 18).

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FIG. 7.
Effect of increased ionic strength on cellular membranes
and poliovirus-induced vesicles. Following infection with wild-type
poliovirus for 4 h, the plasma membranes of COS-1 cells were
disrupted in homogenization buffer and the cellular organelles were
separated on a 12% stock isotonic Percoll density gradient that did
not (A and C) or did (B and D) contain 60 mM KCl; lightest fractions
are at the left. (A and B) Distributions of ER membranes and
poliovirus-induced vesicles identified by immunoblotting as indicated.
(C and D) Distributions of Golgi, mitochondrial, and lysosomal (Lyso)
membranes identified by immunoblotting against p115, immunoblotting
against mtHSP70 [HSP70m(mito), and -hexosaminidase ( -Hex) assays
as indicated.
|
|
The buoyant density of both virally induced and ER membranes
increases after KCl treatment.
To monitor physical attributes of
the various membrane organelles other than protein composition, we
tested the effect of increased KCl concentration on their fractionation
in Percoll gradients. When organelles from poliovirus-infected and
uninfected COS-1 cells were separated in the presence and absence of 60 mM KCl, the buoyant densities of Golgi, lysosomes, and mitochondria remained unchanged (Fig. 7C and D). However, both the
calnexin-containing ER membranes and the 3A- and 2C-containing
membranes showed large increases in buoyant density in the presence of
60 mM KCl (Fig. 7A and B). Thus, the membranes incorporated into the
virus-induced vesicles and ER membranes responded similarly to ionic change.
Endosomal and poliovirus-induced membranes do not
cofractionate.
Modified endosomal membranes have been
suggested to support the RNA replication complexes of other
positive-strand RNA viruses such as Semliki Forest virus and rubella
virus (19, 29). The distribution of organelles containing
Rab9, an endosomal marker, was determined for poliovirus-infected
cells. The distribution of Rab9 was disperse, making it
difficult to determine the extent of colocalization, or lack
thereof, with the 2C-containing poliovirus-induced membranes. However, upon the addition of 60 mM KCl to the Percoll gradients, the 2C-containing and Rab9-containing membranes responded quite differently (Fig. 8). Specifically,
the distribution of the Rab9-containing endosomal fractions obtained
from the poliovirus-infected cells was not substantially altered by the
addition of KCl (Fig. 8A), whereas the 2C-containing membranes
displayed a higher apparent buoyant density in the presence of 60 mM
KCl (Fig. 8B). Therefore, although there may be some endosomal
membranes or proteins present in the poliovirus-induced membranes, the
virally induced membranes did not display the osmotic properties of
endosomes and the cellular endosomal population was not consumed during
poliovirus infection.

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FIG. 8.
Effect of increased ionic strength on buoyant density
distribution of endosomes and poliovirus-induced vesicles. Following
infection with poliovirus for 4 h, the plasma membranes of COS-1
cells were disrupted in homogenization buffer in the presence and
absence of 60 mM KCl, and the cellular organelles were separated on
12% stock isotonic Percoll density gradient that did or did not
contain 60 mM KCl; lightest fractions are at the left. (A) Distribution
of Rab9-containing membranes in the presence and absence of 60 mM KCl;
(B) distribution of poliovirus 2C-containing membranes in the presence
and absence of 60 mM KCl.
|
|
 |
DISCUSSION |
Poliovirus-induced vesicles derive from the ER by the action of 2BC
and 3A proteins.
Several hypotheses have been proposed to explain
the origin of the large numbers of membranous vesicles that accumulate
in poliovirus-infected cells. Ultrastructural evidence for the budding of poliovirus-induced vesicles from ER membranes has been reported (5). The disappearance of the Golgi apparatus in
poliovirus-infected cells (8, 10, 12, 41, 48) is consistent
with the idea that the virus-induced vesicles derive from dispersed
Golgi membranes (39). The inhibition of poliovirus
replication by brefeldin A (24, 30), which inhibits
retrograde traffic from the Golgi to the ER and causes mixing of the
Golgi and ER compartments, argues that either Golgi-to-ER traffic or
the integrity of the ER and Golgi are critical in supporting poliovirus infection.
Although the buoyant densities of the poliovirus-induced vesicles were
not identical to either ER, Golgi, lysosomes, endosomes,
or
mitochondria, they were closest to that of ER membranes (Fig.
2 and
8).
Upon changes in ionic strength of the density gradient
media, the
poliovirus-induced vesicles behaved most like ER (Fig.
7).
Poliovirus 2C and 3A cofractionated with ER membranes in Percoll
gradients when expressed together in the absence of other
viral
proteins (Fig.
4). In contrast, 3A protein coexpressed with
2BC or in
the context of poliovirus infection quantitatively localized
to
membranes whose buoyant density was lighter than that of ER
(Fig.
6 and
8). The simplest explanation of these data is that
2BC localizes to the
ER and causes the formation of membranous
vesicles into which viral 3A
protein is recruited but most resident
cellular ER proteins are
excluded.
Further support for the derivation of the poliovirus-induced vesicles
from the ER comes from studies in which host cells exhibited
an
increase in free cytosolic calcium concentrations as the infectious
cycle of poliovirus progressed. The independent expression of
2BC, but
not 2C, was sufficient to cause this increase in intracellular
calcium
concentration (
23). The loosely bound pool of calcium
utilized in second messenger signaling systems is stored within
the ER
(reviewed in reference
50), suggesting the
possibility
that the large increase in cytosolic calcium that occurs
during
poliovirus infection may result from the disruption of ER
membranes
by the action of
2BC.
It has been reported previously (
1,
10,
48) that the
expression of poliovirus 2BC protein mimics the morphology of
poliovirus-infected cells. Consistent with this idea, the same
decrease
in buoyant density was observed for membranes isolated
from
poliovirus-infected and 2BC-transfected cells. Furthermore,
we observed
in the present study a small number of membranous
vesicles similar in
morphology to those observed during poliovirus
infection. However, most
of the membranous vesicles containing
2C epitopes (Fig.
6C) that formed
during the expression of 2BC
in isolation were much larger than those
observed during poliovirus
infection. The 2BC-induced membranes further
differed from poliovirus-induced
vesicles in that they displayed single
membranes and lacked electron-dense
material in the lumen (Fig.
6B and
C).
In contrast, by both biochemical and ultrastructural criteria, the
membrane rearrangements observed in cells that expressed
both 3A and
2BC resembled those observed during poliovirus infection.
Membrane
vesicles that displayed double membranes, cytoplasmic
lumenal contents,
and substantial immunolabeling by anti-2C antibody
were observed both
in poliovirus-infected cells (Fig.
1B and C)
(
41)
and in cells that coexpressed 3A and 2BC (Fig.
6B and C).
Furthermore,
3A was recruited into the membranes that contain
2BC protein in
both poliovirus-infected (Fig.
7A) and 3A- and
2BC-transfected (Fig.
6A) cells. Whether the interaction between
2BC and 3A proteins is
direct or indirect, mediated by cellular
proteins or lipids, remains to
be
determined.
Similarities between vesicles induced by positive-strand RNA
viruses and autophagic vacuoles.
The appearance of
double-membraned vesicles is not unique to cells infected with
picornaviruses; double-membraned vesicles have been observed in cells
infected with arteriviruses (34) and coronaviruses
(15) as well. The observation that these virus-induced vesicles are bounded by double lipid bilayers argued that they might
form by a mechanism similar to that of autophagic vacuoles (12,
41). Other observations consistent with an autophagy-like origin
for the poliovirus-induced vesicles are (i) the apparent ER origin
(reference 5 and this work), even though resident ER
proteins are, for the most part, excluded (Fig. 2); (ii) the presence
of lysosomal enzymes in the vesicles (41), even though they
derive from the ER; and (iii) the ability of 2C protein to cause
invaginations into ER membranes such that pools of cytoplasm are
trapped within ER membranes that contain 3A protein (Fig. 4), providing
a potential intermediate in the formation of double-membraned vesicles
with cytoplasmic lumen (12, 41). Like the poliovirus-induced vesicles studied here, autophagic vacuoles isolated from primary rat
hepatocytes migrate very similarly to ER membranes in Percoll gradients, at a lower buoyant density than lysosomes (32).
For both autophagic vacuoles and poliovirus-induced vesicles, the apparent exclusion from the ER of protein markers such as calnexin and
PDI could be a selective sorting process.
A model for the formation of poliovirus-induced membranes is shown in
Fig.
9. In the presence of both 2BC and
3A, double-membraned
vesicles that surround cytoplasm and contain both
2BC and 3A protein
but exclude resident ER proteins are formed. The
formation of
predominately single-membraned vesicles by 2BC in
isolation can
be rationalized by two models. First, it is possible that
in the
absence of 3A protein, the engagement of the second membrane
that
changes a budding mechanism into a wrapping mechanism is not
accomplished.
A second possibility is that, by analogy to the
maturation of
autophagic vacuoles, 2BC induces the formation of
double-membraned
vesicles, but in the absence of 3A protein, they
rapidly mature
into degradative organelles that have lost their inner
membranes
and cytoplasmic lumen.

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FIG. 9.
Model for the formation of poliovirus-induced vesicles.
Proteins of the poliovirus replication complex, especially 2BC and 3A
(open squares and circles), accumulate in patches on the ER.
Double-membraned vesicles derive from these ER membranes by a mechanism
that excludes cellular membrane proteins (closed squares and circles)
but includes cytoplasmic material (black) in the lumen.
|
|
Formation of viral RNA replication complexes on intact or
rearranged intracellular membranes.
There is disparity in the
literature concerning the cellular origin of the membranes on which
positive-strand RNA viruses assemble their RNA replication complexes.
If, as we suggest, virus-induced membranes for many positive-strand RNA
viruses are formed from the ER by a process that is similar to cellular
autophagy, the presence of markers from later in the secretory pathway
as well as endosomal contents can be readily explained. For autophagic vacuoles, delivery of extracellular materials such as colloidal gold
has been reported to occur within 10 min of its addition to the
extracellular milieu (28). Therefore, the presence of these
markers does not necessary argue for an endosomal or lysosomal origin
for the membranous vesicles induced by positive-strand RNA viruses and
is just as consistent with an autophagic origin for the cytopathic
vacuoles formed during alphavirus, rubella virus, and mouse hepatitis
virus infection (19, 29, 35, 52).
The molecular biology of autophagy in mammalian cells is just beginning
to be investigated but may play a significant role
in host-pathogen
interactions. Twelve genes in
Saccharomyces cerevisiae are
known to be required for autophagy in yeast (
4); it has
been
demonstrated recently that the human homolog of one of them,
beclin-1,
is required for the induction of autophagy in human
cells
(
27) and reduces Sindbis virus pathogenesis in mice
(
26).
The maturation of vaccinia virus (
44) and
African swine fever
virus (
2), both DNA viruses, involves
the addition of two membranes
acquired by wrapping subviral particles
by the intermediate compartment
and the ER, respectively. The
pathogenic bacterium
Legionella pneumophila grows in
modified membranous compartments within infected
mammalian cells; these
compartments are thought to form by an
autophagic mechanism by virtue
of their double lipid bilayers
derived, at least in part, from the ER
(
47). Mutant bacteria
that fail to thrive in mouse
macrophages showed an increase in
the accumulation of lysosomal markers
and degradative enzymes
in these compartments, suggesting that the
wild-type bacterial
proteins prevent normal maturation of the
autophagic vacuoles
into degradative compartments (
3).
Finally, as we have shown
here, poliovirus proteins 2BC and 3A, which
mimic the biochemical
and morphological changes that occur during
poliovirus infection,
are likely to promote a process similar to
cellular autophagy,
potentially providing valuable tools to dissect
this crucial cellular
process.
 |
ACKNOWLEDGMENTS |
We thank our colleagues Peter Sarnow, Amy Clewell, Stephen Deitz,
Dana Dodd, Stanley Falkow, Erin Gaynor, Richard Scheller, and Elizabeth
Stillman for comments on the manuscript, and we are grateful to John
Doedens and Dana Dodd for performing initial transfection experiments.
We thank Kurt Bienz, Denise Egger, Gerry Waters, Sue Pierce, Hans-Peter
Hauri, and Suzanne Pfeffer for antibodies used in this study.
This work was supported by the National Institutes of Health and by the
Hutchison Program for Translational Medicine of Stanford University.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305. Phone: (650) 498-7075. Fax: (650) 498-7147. E-mail:
karlak{at}leland.stanford.edu.
Present address: PPD Discovery, Inc., Menlo Park, CA
94025-1435.
 |
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Journal of Virology, October 2000, p. 8953-8965, Vol. 74, No. 19
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