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Journal of Virology, September 2000, p. 8048-8052, Vol. 74, No. 17
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
ATP Is Required for Correct Folding and Disulfide
Bond Formation of Rotavirus VP7
Ali
Mirazimi and
Lennart
Svensson*
Department of Virology, Swedish Institute for
Infectious Disease Control, Karolinska Institute, 171 82 Solna,
Sweden
Received 15 February 2000/Accepted 8 June 2000
 |
ABSTRACT |
Rotavirus is one of very few viruses that utilize the endoplasmic
reticulum (ER) for assembly, and therefore it has been used as an
attractive model to study ER-associated protein folding. In this study,
we have examined the requirements for metabolic energy (ATP) for
correct folding of the luminal and ER-associated VP7 of rotavirus. We
found that VP7 rapidly misfolds in an energy-depleted milieu and is not
degraded within 60 min. We also found that VP7 attained a stable
minimum-energy state soon after translation in the ER. Most
surprisingly, energy-misfolded VP7 could be recovered and establish
correct disulfide bonds and antigenicity following a shift to an
ATP-rich milieu. Using a Semliki Forest virus expression system, we
observed that VP7 requires ATP and cellular, but not viral, factors for
correct disulfide bond formation. Our results show for the first time
that the disulfide bond formation of rotavirus VP7 is an ATP-dependent
process. It has previously been shown that chaperones hydrolyze ATP
during interaction with newly synthesized polypeptides and prevent
nonproductive intra- and intermolecular interactions. The most
reasonable explanation for the energy requirement of VP7 is thus a
close interaction during folding with an ATP-dependent chaperone, such
as BiP (Grp78), and possibly with protein disulfide isomerase. Taken
together, our observations provide new information about folding of
ER-associated proteins in general and rotavirus VP7 in particular.
 |
INTRODUCTION |
Rotavirus undergoes a unique
maturation process in the endoplasmic reticulum (ER). The assembly
process, which includes translocation of subviral particles across the
ER membrane and retention of mature virus in the ER, has provided a
system in which posttranslational events, such as folding, targeting,
and retention, can be studied (1, 13, 15, 19, 22, 23, 26).
One of the rotavirus glycoproteins is the VP7 outer capsid protein,
which is a luminal and ER-associated polypeptide with only N-linked
high-mannose oligosaccharide residues (10). The VP7 protein
of group A contains eight cysteine residues. These cysteines are highly
conserved and important for the conformation of VP7 (10).
Biochemical and morphological studies have established that calcium, an
oxidizing milieu, and N-linked glycosylation are critical for the
correct folding of VP7 (8, 15, 18, 20, 24). It has also been shown that VP7 becomes endo-
-N-acetylglucosaminidase H
(endo-H)-resistant after brefeldin A treatment, which suggests
modifications by Golgi-associated enzymes (16).
While it has previously been shown that protein folding in bacteria and
mitochondria requires metabolic energy (2, 9), the role of
ATP in the folding of proteins in the ER is still incompletely known.
There are only a few studies of the effect of energy-depleting
conditions on the posttranslational process of exporting proteins
(3, 7), and there is no information available concerning the
role of ATP in the folding of ER-associated proteins.
Previous studies have shown that major histocompatibility complex class
I antigens require ATP for assembly in vitro (11), and it
has also been shown that the hemagglutinin protein of influenza virus
and the G protein of vesicular stomatis virus require ATP for
posttranslational processing (3, 7). Furthermore, it has
been demonstrated that ATP depletion blocks the export of proteins from
the ER to the Golgi apparatus (25). More recently, it has
also been shown that ATP is required for the assembly of herpesvirus
and the release of retrovirus (6, 27).
In previous studies, we found that calnexin and protein disulfide
isomerase (PDI) interact with NSP4 and VP7 during maturation (14,
15). In this study, we extend these observations and report that
metabolic energy is required for correct disulfide bond formation and
folding of VP7. We also found that VP7 reaches a stable minimum-energy
state immediately after translation. These results provide new
information about the role of ATP in the posttranslational processing
of VP7.
 |
MATERIALS AND METHODS |
Cells, viruses, and antibodies.
MA-104 cells were grown in
Dulbecco's modified Eagle's minimal essential medium (DMEM)
supplemented with 10% fetal calf serum. Rhesus rotavirus (RRV) was
obtained from infected MA-104 cells by freezing and thawing. The
monoclonal antibody (MAb) used in this study, M60, recognizes a
cross-reactive nonneutralizing epitope on VP7 (21) which is
dependent on correct disulfide bond formation (15, 24).
Rotavirus infection.
RRV was activated with 10 µg of
trypsin (Sigma, St. Louis, Mo.) per ml for 30 min at 37°C before
inoculation of MA-104 cells. After 1 h of infection, the inoculum
was replaced with serum-free Eagle's MEM. Virus titers were determined
by peroxidase staining, as previously described (15, 16).
DNA constructs.
cDNAs encoding the open reading frame of VP7
(SA11) were synthesized by reverse transcription followed by PCR. The
primers used (5'-3') were
5'-ACTAGTCCTAGGTAGCTCCTTTTAATG-3' and
5'-ACTAGTCCTAGGCTAACCTAAGTTATA-3'. The
underlined sequences are restriction sites for SpeI and
AvrIII. The PCR product was cloned in a PCR-script plasmid
(Stratagene, La Jolla, Calif.). After transfection into
Escherichia coli (Stratagene), positive clones were purified
and plasmids were digested with SpeI. The gene was then
ligated into the SpeI site of a Semliki Forest virus (SFV)
expression vector plasmid. The recombinant plasmid (pSFV-VP7) was then
transfected into E. coli as described previously
(12).
Generation of recombinant SFV.
Recombinant plasmids were
purified using plasmid minipreps (Qiagen, Valencia, Calif.),
linearized, and used as templates for in vitro transcription with SP6
RNA polymerase as described previously (12, 17), with the
exception that recombinant plasmids were linearized with
NruI instead of SpeI.
In vitro transcripts made from a recombinant pSFV-VP7 plasmid were
electroporated into BHK-21 cells together with an equal amount of mRNA
transcript from SpeI-linearized pSFV-Helper 1 (12, 17). Electroporated BHK-21 cells were then diluted in medium, seeded onto tissue culture dishes, and incubated for 24 h at
37°C. The media, including recombinant SFV, were collected and frozen at
70°C until use.
Treatment of cells with DTT and ATP-depleting medium.
To
deplete cells of intracellular ATP, monolayers were incubated with
glucose-free DMEM containing 20 mM 2-deoxy-D-glucose and 10 mM sodium azide as described previously (3, 6, 27).
To produce metabolically labeled proteins synthesized under reducing
conditions, 2 mM dithiothreitol (DTT) was added to the
medium 30 min
before a pulse and maintained during the chase periods
(
15).
Metabolic labeling of viral proteins.
To produce
metabolically labeled cell lysates, MA-104 cells were infected with
trypsin-activated RRV at a multiplicity of infection (MOI) of 10 as
described previously (14, 16). At 7 h postinfection
(p.i.), infected cells were starved for 1 h in methionine- and
cysteine-free medium before being labeled for 5 min with 250 µCi of
[35S]methionine-cysteine (Trans-label; Dupont). For chase
experiments, cells were washed and incubated with Eagle's MEM or
ATP-depleting medium containing an excess of methionine (10 mM) and 1 mM cycloheximide. At the end of each radioactive pulse or after a chase
period, the cells were incubated with ice-cold phosphate-buffered
saline containing 40 mM N-ethylmaleimide (NEM) (Sigma) for 2 min to prevent disulfide bond rearrangement (15,
24). The cells were then lysed in ice-cold lysis buffer
{2% 3-[(3-cholamidopropyl)-dimethylammonio]-1-propanesulfonate (CHAPS), 150 mM NaCl, and 50 mM HEPES}, and the lysate was
clarified of cell debris by centrifugation at 13,000 × g for 2 min in a microcentrifuge before use.
Endo-H digestion.
Digestion with Endo-H (Boehringer,
Mannheim, Germany) was performed essentially as described previously
(16). Briefly, cell lysates were diluted 1/10 with 50 mM
sodium acetate (pH 5.5) and digested with 5 mU of Endo-H at 37°C overnight.
RIPA.
Immunoprecipitation was performed essentially as
described previously (24). Briefly, radiolabeled lysates
(100 µl) were incubated with 10 µl of the desired antibody and 400 µl of radioimmunoprecipitation (RIPA) buffer (150 mM NaCl, 50 mM
HEPES, and 0.5% CHAPS) overnight at 4°C. Fifty microliters of
Staphylococcus aureus protein A-Sepharose CL-4B (Pharmacia,
Uppsala, Sweden) was subsequently added to the mixture, which was then
incubated for 2 h at 4°C. The immune complexes were washed three
times with RIPA buffer, suspended in nonreducing (10 mM Tris-HCl [pH
6.8], 0.5% sodium dodecyl sulfate [SDS], and 10% glycerol) or
reducing (nonreducing sample buffer with 2%
-mercaptoethanol) sample buffer and boiled for 5 min before separation by
SDS-polyacrylamide gel electrophoresis (PAGE).
SDS-PAGE.
Polypeptide separation was performed by SDS-PAGE
with a 4.5% stacking gel and a 10% separation gel as previously
described (24). Electrophoresis was carried out at a
constant voltage of 50 V at room temperature, followed by fixation with
10% glacial acetic acid and 35% methanol for 1 h at room
temperature. Autoradiography was performed as previously described
(24). Molecular mass standards (Amersham, Little
Chalfont, United Kingdom) included myosin (200 kDa), phosphorylase B
(97 kDa), bovine serum albumin (69 kDa), ovalbumin (46 kDa), carbonic
anhydrase (30 kDa), and lysozyme (14 kDa).
 |
RESULTS AND DISCUSSION |
Metabolic energy is required to support correct folding and
disulfide bond formation of VP7.
To study the role of ATP in the
posttranslational folding of rotavirus VP7, RRV-infected cells were
treated with 2 mM DTT in Eagle's MEM for 30 min before and
during a metabolic pulse. To study posttranslational processing, the
cells were chased in ATP or ATP-depleted medium (3, 6,
27) for up to 60 min (Fig. 1). The
cells were then harvested in lysis buffer and immunoprecipitated by MAb M60, a disulfide bond-dependent MAb (15, 24).

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FIG. 1.
Correct disulfide bond formation of rotavirus VP7
requires metabolic energy during posttranslational processing. MA-104
cells were infected with RRV (MOI, 10) and, at 7 h p.i., starved
for 1 h in methionine-cysteine-free medium and subsequently
labeled with [35S]methionine-cysteine (250 µCi) for 5 min. DTT (2 mM) was added to the medium at 7.5 h p.i. and
maintained during the 5-min metabolic pulse and a 5-min chase. To
examine posttranslational processing, labeled proteins were chased in
ATP medium (Eagle's MEM supplemented with 1 mM cycloheximide and 10 mM
methionine) or ATP-depleted medium (20 mM
2-deoxy-D-glucose, 10 mM sodium azide, 1 mM cycloheximide,
and 10 mM methionine in glucose-free DMEM) for the indicated times. At
the end of the pulse and each chase, the monolayers were incubated with
ice-cold phosphate-buffered saline containing 40 mM NEM for 2 min,
followed by cell lysis, immunoprecipitation by MAb M60, and analysis by
reducing SDS-PAGE. Molecular mass markers (in kilodaltons) are shown on
the left side of the panel.
|
|
As expected (
24), shifting the conditions from a reducing
(with DTT) to an oxidizing (without DTT) milieu (Fig.
1) rapidly
restored the disulfide-dependent VP7 M60 epitope. However, in
contrast
to the ATP-rich milieu, VP7 folding was not restored
within 60 min in
the ATP-depleted milieu (Fig.
1), suggesting
that VP7 misfolds in the
absence of metabolic energy during posttranslational
processing. We
have previously (
24) shown that misfolded VP7
can be
restored and can establish correct disulfide bonds upon
incubation in
oxidizing medium. Here we extend this information
and show for the
first time that the folding process not only
requires an oxidizing
milieu but also metabolic
energy.
While it is known that protein folding in mitochondria and the cytosol
of bacteria is energy dependent (
2,
9), the situation
is
less clear for the ER of mammalian cells. The fact that ATP
is present
in the ER lumen became evident recently with the discovery
of an ATP
translocator in the ER membrane (
5), but there is
only a
very limited amount of information about the role of ATP
in protein
folding in the ER (
3,
7). However, it has previously
been
shown that molecular chaperones require ATP in order to prevent
misfolding of newly synthesized polypeptides (
3). As we and
others have previously shown that PDI and BiP (Grp78) interact
with VP7
during maturation (
15,
28), we believe that the most
reasonable explanation for the energy requirement for correct
folding
of VP7 is that ATP is required for chaperone-assisted
maturation of
VP7.
Misfolded VP7 is not degraded in energy-depleted cells.
To
examine if VP7 in ATP-depleted cells was degraded during chase, we
analyzed the cell lysates shown in Fig. 1 under reducing conditions. To
identify VP7, an Endo-H experiment was performed (Fig.
2b). Quantification by densitometry
revealed that VP7 was not degraded within 60 min (Fig. 2a and c). This
observation leads to the conclusion that the lack of MAb M60 reactivity
to VP7 in the ATP-depleted cells (Fig. 1) could not be explained as
degradation of VP7. As no VP7 aggregates could be detected in
nonreducing gels (not shown), we propose two possible explanations for
the disappearance of VP7: VP7 remains in a reduced form during ATP depletion, or VP7 oxidizes and obtains aberrant intradisulfide bonds
during ATP depletion. It has previously been shown that an ATP-depleted
milieu does not diminish disulfide bond formation (3).
Furthermore, we show below that VP7 establishes disulfide bonds during
ATP deficiency, which suggests that VP7 does not remain in a reduced
form after a shift from reducing to oxidizing conditions during ATP
depletion.

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FIG. 2.
VP7 is not degraded during ATP depletion. (a) Analysis
of the cell lysates shown in Fig. 1 under reducing SDS-PAGE conditions.
Molecular mass markers (in kilodaltons) are shown on the left side of
the panel. (b) Aliquots of cell lysates (panel a, lanes 6 and 11) were
diluted 1/10 with sodium acetate and mock or Endo-H treated (5 mU) at
37°C for 4 h. After digestion, the cell lysates were separated
by SDS-PAGE under reducing conditions. The cell lysate in panel a, lane
6, was immunoprecipitated with MAb M60. Arrowheads, digested VP7. (c)
The amount of VP7 was measured by densitometry from the fluorograph
shown in panel a, lanes 2 to 11, and the results are presented relative
to the total amount of VP6.
|
|
It is possible that ATP-depleted VP7 forms large aggregates, which may
not enter the gel. However, as we did not detect any
intermediate forms
of aggregates during our chase protocol under
nonreducing conditions,
we believe that VP7 does not aggregate
in ATP-depleted media. As no VP7
aggregates could be detected
in nonreducing gels and no degradation was
observed within 60
min, we favor the idea that VP7 obtains aberrant
intradisulfide
bonds during energy deficiency. This is further
supported by the
lack of reactivity with MAb M60 during ATP depletion
(Fig.
1).
Energy-misfolded VP7 is rescued and establishes correct disulfide
bonds following a shift to an oxidizing and ATP-rich milieu.
Next,
we asked if energy-misfolded VP7 could be recovered if ATP was
restored. To address this question, RRV-infected cells were treated
with 2 mM DTT for 30 min before and during a 5-min metabolic pulse
followed by chase as described in the legend to Fig.
3. The figure shows that the
disulfide bond-dependent epitope was absent before ATP was
restored. After about 30 min in ATP medium, correct disulfide bonds
were catalyzed and a significant amount of VP7 was recognized by MAb
M60. Careful examination of Fig. 3 also reveals that slightly more VP7
was immunoprecipitated after 5 min than after 60 min of chase (
DTT
ATP), and as we did not detect any measurable degradation of VP7
during ATP deficiency, we suggest that a prolonged ATP deficiency may
lead to permanent misfolding of VP7. We and others have previously
shown that reduced and misfolded proteins can be rescued by incubation
in oxidizing medium (4, 15, 24). We now extend these
observations and show that not only is an oxidizing milieu required to
rescue misfolded proteins, metabolic energy is also required, an
observation not previously reported for ER-associated proteins.

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FIG. 3.
Energy-misfolded VP7 is refolded and establishes correct
disulfide bonds following a shift to an oxidizing and ATP-rich milieu.
At 7 h p.i., RRV-infected cells were starved for 1 h in
methionine- and cysteine-free medium and subsequently metabolically
labeled (250 µCi) for 5 min. DTT (2 mM) was added to the medium at
7.5 h p.i. and maintained during pulse and chase for 5 min. The
reducing medium (+DTT ATP) was then replaced with oxidizing medium
( DTT ATP) for 5 or 60 min followed by incubation in oxidizing ATP
medium ( DTT +ATP). At the end of each chase, the monolayers were
incubated with ice-cold PBS-NEM, followed by cell lysis,
immunoprecipitation by M60, and analysis under reducing SDS-PAGE
conditions. Molecular mass markers (in kilodaltons) are shown on the
left side of the panel.
|
|
Rotavirus VP7 reaches a stable minimum-energy state during or soon
after translation.
To determine if VP7 reaches a stable
minimum-energy conformation during or soon after translation, infected
cells were labeled for 5 min in oxidizing ATP medium and chased in
ATP-deficient medium for up to 60 min. As illustrated in Fig.
4, and in contrast to results with
reducing ATP medium (with DTT) (Fig. 1), VP7 was recognized by MAb M60
after the pulse, suggesting that the disulfide bond-dependent epitope
critical for recognition by MAb M60 was catalyzed during translation.
Most surprisingly, the epitope was intact during ATP depletion for up
to 60 min of chase, suggesting that VP7 had reached a conformation
during translation which did not depend on metabolic energy to remain
intact.

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FIG. 4.
Rotavirus VP7 reaches an ATP-resistant conformation
during or soon after translation. Infected cells were labeled for 5 min
with [35S]methionine-cysteine (250 µCi) in oxidizing
and ATP-containing medium followed by chase in ATP-deficient medium (20 mM 2-deoxy-D-glucose, 10 mM sodium azide, 1 mM
cycloheximide, and 10 mM methionine in glucose-free DMEM). At the end
of the pulse and each chase, monolayers were incubated with ice-cold
PBS-NEM for 2 min, followed by cell lysis, immunoprecipitation by M60,
and analysis under nonreducing (upper panel) or reducing (lower panel)
SDS-PAGE conditions. Molecular mass markers (in kilodaltons) are shown
on the right side of the panel.
|
|
Critical examination of Fig.
4 reveals that migration of VP7 increased
during the chase (Fig.
4, upper panel), suggesting
additional
processing of VP7 in the absence of metabolic energy.
Analysis of the
same lysates under reducing conditions (Fig.
4,
lower panel) revealed
that the migration differences disappeared
(Fig.
4), indicating that
the increased mobility of VP7 under
nonreducing conditions was not a
result of oligosaccharide trimming
of VP7 but rather an effect of the
catalysis of intramolecular
disulfide
bonds.
Based on the results presented in Fig.
4, we propose that VP7 reaches a
minimum-energy state during or soon after translation
(detected by MAb
M60) which does not depend on ATP to remain intact.
This is in contrast
to influenza hemagglutinin, whose monomers
depend on energy to remain
oxidized and correctly folded and which
do not reach a stable
minimum-energy state soon after translation
(
3). The most
reasonable explanation for the two different
folding pathways would be
that influenza hemagglutinin is a secretory
protein that undergoes a
series of trimming and folding events
during its transport through the
secretory pathway, whereas rotavirus
VP7 remains in the ER and only
contains a few N-linked
carbohydrates.
Careful examination of Fig.
3 also reveals that more VP7 precipitated
in the chase than in the pulse (Fig.
4); we therefore
believe that
additional or shifted disulfide bonds (posttranslationally)
make the
M60 epitope more available for this antibody during the
chase.
VP7 establishes correct disulfide bonds without the presence of
additional rotavirus proteins.
The results presented so far were
obtained with infectious rotavirus under various experimental
conditions. To examine the ability of VP7 to assemble and establish
correct disulfide bonds in the absence of additional rotavirus
proteins, VP7 was cloned and expressed by an SFV expression system. To
analyze the expression efficiency of VP7, cells were infected with
recombinant SFV VP7. Figure 5 shows that
VP7 was efficiently expressed concomitant with a significant reduction
in host cell protein synthesis. To ensure that VP7 established correct
disulfide bonds, it was immunoprecipitated with the disulfide
bond-dependent MAb M60. Figure 5 shows that M60 recognized VP7,
indicating that VP7 expressed by SFV established correct disulfide
bonds and that this conformation was not dependent on additional
rotavirus proteins.

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FIG. 5.
SFV-expressed VP7 establishes correct disulfide bonds.
Cells were mock or SFV VP7 infected (MOI, 10) and, at 18 h p.i.,
starved for 1 h in methionine- and cysteine-free medium and
subsequently labeled with [35S]methionine-cysteine (250 µCi) for 45 min. At the end of the pulse, the monolayers were
incubated with ice-cold PBS-NEM, harvested in lysis buffer,
immunoprecipitated with M60, and analyzed under reducing SDS-PAGE
conditions. Molecular mass markers (in kilodaltons) are shown on the
left side of the panel.
|
|
To analyze the role of ATP in VP7 folding, MA-104 cells were infected
with recombinant SFV and treated with 2 mM DTT before
a metabolic
pulse. DTT was maintained during pulse and chase but
removed 60 min
before lysis. As shown in Fig.
6, energy
depletion
caused misfolding of VP7, most likely due to aberrant
disulfide
bond formation.

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FIG. 6.
SFV-expressed VP7 requires ATP for correct folding.
MA-104 cells were infected with recombinant SFV VP7 (MOI, 10). At
18 h p.i., the cells were starved for 1 h in methionine- and
cysteine-free medium and subsequently labeled with
[35S]methionine (250 µCi) for 15 min. DTT (2 mM) was
added to the medium at 18.5 h p.i. and maintained during the
pulse. The cells were chased in oxidizing ATP (+ATP) or ATP-deficient
( ATP) medium for 60 min. The monolayers were subsequently incubated
with ice-cold PBS-NEM, harvested in lysis buffer, immunoprecipitated
with M60, and analyzed by reducing SDS-PAGE. Molecular mass markers (in
kilodaltons) are shown on the right side of the panel.
|
|
In summary, we report for the first time that metabolic energy is
required to ensure the correct folding and disulfide bond
formation of
ER-associated proteins, such as rotavirus VP7. We
have also shown that
misfolded VP7 can be correctly refolded in
the presence but not in the
absence of ATP. Furthermore, we found
that VP7 reaches a stable
minimum-energy state during or immediately
after translation. We and
others (
14,
28) have previously
shown that chaperons and
foldase enzymes, such as BiP and PDI,
participate in VP7 folding. It is
most reasonable to assume that
the energy-dependent misfolding of VP7
was influenced by the ATP-dependent
chaperone BiP (
3) and
possibly also by PDI, which participates
in the disulfide bond
formation of VP7 (
15).
 |
ACKNOWLEDGMENTS |
This project received financial support from the Swedish Medical
Council (grant K98-06X-10392-06B), the Karolinska Research Foundation,
and the Swedish Society for Medical Research.
We are grateful to Harry Greenberg for MAb M60.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Virology, Swedish Institute for Infectious Disease Control, Karolinska Institute, 171 82 Solna, Sweden. Phone: 46-8-4572696. Fax: 46-8-301635. E-mail: Lensve{at}mbox.ki.se.
 |
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Journal of Virology, September 2000, p. 8048-8052, Vol. 74, No. 17
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
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