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Journal of Virology, July 2000, p. 6401-6407, Vol. 74, No. 14
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Characterization of a Baculovirus Alkaline
Nuclease
Lulin
Li and
George F.
Rohrmann*
Department of Microbiology, Oregon State
University, Corvallis, Oregon 97331-3804
Received 10 February 2000/Accepted 17 April 2000
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ABSTRACT |
All baculovirus genomes sequenced to date encode a homolog of an
alkaline nuclease that has been characterized in the
Herpesviridae. In this report we describe the
characterization of the alkaline nuclease (AN) homolog of the
Autographa californica multinucleocapsid nucleopolyhedrovirus (AcMNPV) (open reading frame 133).
His-tagged AN constructs were expressed in recombinant baculoviruses
and affinity purified, and then their enzymatic activity was
characterized. AN was found to degrade linear DNA at alkaline pH,
preferred Mg2+ over Mn2+, had optimal
activity at 35°C, and did not appear to have a salt requirement. To
rule out contamination by the endogenous baculovirus gene product
or a cellular enzyme, point mutations were introduced into a highly
conserved domain of the gene. These mutations were found to markedly
reduce or eliminate most of the activity of the affinity-purified
enzyme. An antibody generated against the protein was used to analyze
its expression by Western blot analysis. AN was found to be expressed
at low levels by 12 h postinfection, with maximal expression at
24 h postinfection. Attempts to generate a virus with this gene
inactivated were unsuccessful, suggesting that AN may be encoded
by an essential gene.
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INTRODUCTION |
Baculoviruses are a large family of
viruses that infect invertebrates, particularly insects of the order
Lepidoptera. They contain circular, supercoiled,
double-stranded DNA genomes of 100 to 180 kb. These genomes are
punctuated by repeated sequences called homologous regions that
function as origins of DNA replication in transient assays (18,
26). Evidence suggests that genome replication occurs through a
rolling-circle intermediate, resulting in large concatemers that are
resolved into unit-length molecules during virion maturation (21,
25, 34). Although a number of genes have been identified that are
involved in DNA replication (17, 23), neither
cis-acting genome sequences nor the genes required for
proper genome processing have been identified.
The complete sequences of a number of baculovirus genomes have recently
been reported (1, 2, 12, 15, 19). All encode a homolog of an
alkaline nuclease present in members of the Herpesviridae
(reviewed in reference 9). In herpes simplex virus
type 1 (HSV-1), the alkaline nuclease (AN) has the properties of an
exonuclease and functions optimally at pH 9 on linear DNA (4, 9,
10, 16). Recombinant cell lines expressing AN have been used to
produce HSV-1 AN deletion mutants. These virus synthesize wild-type
(wt) levels of DNA and produce encapsidated genomes. However, the
virions are of low infectivity in certain cell lines and are not
detected in the infected cell cytoplasm, suggesting that AN is required
for the production of viable nucleocapsids that are capable of exit
from the nucleus into the cytoplasm (30). This may involve
the processing of branched replication intermediates into genomic DNA
that can be encapsidated (10, 24). It has also been
suggested that it may play a role in the generation of 3'OH-terminal
single-stranded DNA tails that are thought to be involved in repair of
breaks in homologous DNA regions as part of a DNA recombination system
(16).
Because AN homologs appear to be universally present in baculovirus
genomes, are likely to play an essential role in baculovirus replication, and may be involved in the final processing steps leading
to the production of mature genomes, we initiated investigations of this enzyme. In this report, we describe the purification and characterization of the Autographa californica
multinucleocapsid nucleopolyhedrovirus (AcMNPV) AN and
compare it properties to those of the herpesvirus enzyme.
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MATERIALS AND METHODS |
Virus and cell lines.
Spodoptera frugiperda (Sf-9)
cells (32) were cultured in TNM-FH medium (14)
supplemented with 10% fetal bovine serum, penicillin G (50 U/ml),
streptomycin (50 µg/ml; Whittaker Bioproducts), and amphotericin B
(Fungizone; 375 ng/ml; Flow Laboratories). Cell culture maintenance was
carried out according to published procedures (31). Sf-9
cells were also cultured in Sf-900 II medium (Gibco-BRL) as previously
described (11). AcMNPV (strain E-2) was used for
wt infections.
Enzymes, radioisotopes, DNA purification, PCR, and DNA
sequencing.
Restriction and DNA-modifying enzymes were purchased
from Life Technologies and New England Biolabs and were used according to the manufacturer's instructions. Isotopes were purchased from New
England Nuclear, Inc. DNA sequence analysis and PCR were carried out as
described previously (22). DNA was purified using Qiagen columns (Qiagen, Inc.).
Recombinant baculovirus and construction of mutants.
Recombinant baculoviruses were produced using pBlueBacHis2B vector and
BacNBlue linear DNA (Invitrogen) as instructed by the manufacturer. To
remove the BamHI site in pBlueBacHis2B, the plasmid was
digested with BamHI, blunted with T4 DNA polymerase, and
religated. The vector was then digested with XhoI and
PstI and ligated to a SalI (nucleotide [nt]
112551)-to-NsiI (nt 114840) (2) fragment containing the AcMNPV AN homolog. The SalI site
is 9 nt upstream of the predicted translational initiation codon of
AcMNPV AN, whereas the NsiI site is about 1,000 nt downstream of the stop codon. This resulted in a
His6-tagged fusion protein with a predicted mass of 52.6 kDa and the sequence MPRGSHHHHHHGMASMTGGQQMGRDLYDDDDKDASELDIM upstream of the wt ATG.
Mutant AN construction took advantage of unique StyI (nt
112975) and BamHI (nt 113032) (2) sites that
flanked a motif (motif II) which is predicted to encode a metal binding
domain (30) and is conserved between baculoviruses and
herpesviruses. Two oligomers were synthesized for each mutant so that
they could be annealed and inserted into DNA cut with these two
enzymes. The double-stranded oligomers (translation products are
indicated above the nucleotide sequences; mutant nucleotide and amino
acids are underlined)
were AN-G141A
L A L H A A S P D A . . .
+5'CTTGGCTTTGCACGCCGCTTCGCCCGATGCGTATTTTTCTCTCGCCGACGGAACGTG3'
3' CGAAACGTGCGGCGAAGCGGGCTACGCATAAAAAGAGAGCGGCTGCCTTGCACCTAG5'
and
AN-S146A
L G L H A A A P D A . . .
+5'
CTTGGGTTTGCACGCCGCTGCGCCCGATGCGTATTTTTCTCTCGCCGACGGAACGTG3'

3'
CCAAACGTGCGGCGACGCGGGCTACGCATAAAAAGAGAGCGGCTGCCTTGCACCTAG5'
After cloning of each mutant sequence, the alteration was
confirmed by DNA sequence analysis (
1).
Deletion of AN.
We attempted to delete the AN gene from
AcMNPV. To accomplish this, the
-galactosidase gene under
the Drosophila heat shock promoter (hsp) (pAcDZ1
[33]) was cut with XbaI and SmaI
to isolate the hsp-lacZ-containing fragment, the
XbaI end was blunted with T4 DNA polymerase, and the
fragment was inserted into pAN1 (see below) between the StyI
(nt 112975) and HpaI (nt 113148) sites such that about 175 nt, including the highly conserved motif II, were deleted. The
resultant plasmid, pANlacZ, was linearized and transfected
with wt AcMNPV DNA into Sf-9 cells to construct recombinant virus.
Preparation of extracts of Sf-9 cells.
The His-tagged enzyme
expressed in Sf-9 cells was purified using a modification of a
published procedure (30). Log-phase Sf-9 cells (about 2 × 106/ml) in about 100 ml of Sf-900 II medium (Life
Technologies) in a 2-liter tissue culture flask were infected at a
multiplicity of infection of about 10 and incubated on a shaker at
27°C. After 1 h of incubation, the volume was increased to 200 ml with Sf-900 II and incubated at 27°C for 48 h. Cells were
then harvested by centrifugation (3,000 rpm for 15 min), resuspended in
10 ml of phosphate-buffered saline, pH 7.4 (Sigma Chemical Co.), and
centrifuged again; the pellet was stored at
80°C. For enzyme
purification, the frozen pellets were resuspended in 8 ml of buffer A
(20 mM Tris-HCl [pH 7.5], 1 mM MgCl2, 5 mM
-mercaptoethanol, 80 mM KCl, 0.2% NP-40), freeze-thawed twice, and
then incubated on ice for 20 min in the presence of 1 mM
phenylmethylsulfonyl fluoride (PMSF) and the following proteinase
inhibitors from Life Technologies: aprotinin (10 µg/ml), leupeptin (7 µg/ml), and pepstatin (7 µg/ml). Cells were homogenized 20 to 25 times in a Dounce homogenizer with a type B pestle and centrifuged at
10,000 × g in a Sorvall GSA rotor, and the pellet and
supernatant were saved. The pellet was treated again as described
above, and the supernatants were combined and then centrifuged at
100,000 × g in an SW28 rotor. The supernatant (about
16 ml) was precipitated with 3.2 g of ammonium sulfate (20%) for
45 min at 10°C. The precipitate was pelleted by centrifugation at
17,000 × g in a Sorvall SS-34 rotor for 30 min. An
additional 5.6 g of ammonium sulfate was added to the supernatant
(to about 55%) and incubated for 1 h at 10°C. This preparation
was centrifuged as described above, and the two pellets were suspended
in 5 ml of buffer B (20 mM Tris-HCl, 150 mM NaCl, 5 mM
-mercaptoethanol, 20% glycerol [pH 8.0]) and dialyzed overnight against buffer B. The dialysate was then centrifuged at
17,000 × g to remove insoluble material, and then the
preparation was affinity purified on TALON resin (Clontech, Inc.)
essentially as recommended by the manufacturer. The resin (150 µl)
that had been washed with 10 ml of wash buffer (buffer B containing
0.1% Triton X-100) was mixed with the dialysate and rotated for 30 min
at 4°C. The resin was centrifuged at 1,000 rpm in an International centrifuge for 5 min. The supernatant was removed and designated the
flowthrough. The resin was then treated with four 1-ml aliquots of wash
buffer (wash fractions 1 to 4 [W1 to W4] and 1-ml solutions of wash
buffer containing the following imidazole concentrations: four times,
10 mM (W5 to W8); four times, 30 mM (elution fractions 1 to 4 [E1 to
E4]), four times, 50 mM (E5 to E8); and two applications, 100 mM (E9
and E10). Protein concentration was determined by Coomassie blue
staining, Western analysis, and spectrophotometric quantification using
a Coomassie Plus protein assay kit (Pierce, Inc.). Fractions E6 and E7
were used for the assays described below.
Cloning, expression, and antibody production against bacterially
expressed His-tagged AN.
The AN open reading frame (ORF) was
cloned as a SalI (nt 112551)-NsiI (114840)
(2) fragment inserted into the XhoI and PstI sites of pKS(
) to construct pAN1. pAN1 was cut with
KpnI and XbaI; the insert containing the AN gene
was gel purified and inserted into pHT4 cut with the same enzymes. pHT4
was constructed by cloning AcMNPV DNA polymerase gene, with
a NcoI site at the initial ATG and extended to the
downstream SacI site, into NcoI and
SacI sites of pTrc-7Hpro (7). The resultant
plasmid was digested with NcoI and KpnI, blunted
with T4 DNA polymerase, and then religated to produce pHT-AN. This
His7-tagged fusion contained the sequence
MMHHHHHHHAMGPPLDIM upstream of the AN ATG and has a predicted molecular
size of about 50.4 kDa. For protein production, Escherichia
coli BL21 cells transformed with pHT-AN were inoculated into 2 ml
of Luria-Bertani (LB) broth (29) containing 50 µl of
ampicillin per ml. After 3 h at 37°C, this culture was used to
seed a 100-ml LB culture and incubated for 3 to 4 h until the cells reached an optical density at 600 nm of 0.6 to 1.0. Isopropyl-
-D-thiogalactopyranoside (IPTG) (dissolved in
2% ethanol) was added to a final concentration of 1 mM, and the
culture was incubated overnight at 22°C. Cells were harvested and
washed with 10 ml of phosphate-buffered saline and the pellet was
stored at
80°C. Protein purification was adapted from reference
4. The pellet was resuspended in 20 ml of lysis buffer (20 mM Tris-HCl [pH 8.0], 100 mM NaCl, 5 mM
-mercaptoethanol, 1 mM PMSF, 20% sucrose) containing 1 mg of
lysozyme per ml, incubated on ice for 20 min, subjected to two
freeze-thaw cycles, and then sonicated for 30 s. This sample was
centrifuged at 20,000 × g for 15 min, and the
supernatant was transferred to a fresh tube. The pellet was resuspended
in 20 ml of lysis buffer and centrifuged as above. The two supernatants
were combined and mixed with 150 µl of TALON (Clontech) resin
previously treated with wash buffer (20 mM Tris-HCl [pH 8.0], 100 mM
NaCl, 5 mM
-mercaptoethanol, 1 mM PMSF, 0.1% Triton X-100, 10 mM
imidazole) and rotated for 1 h at 4°C. The suspension was
centrifuged at 1,000 rpm and washed sequentially with 2-ml aliquots of
wash buffer containing the following concentrations of imidazole: 25 mM, four times; 100 mM, twice; and 200 mM, once. The 100 and 200 mM
eluates were pooled, and the protein content and purity were assayed by
Coomassie blue staining of polyacrylamide gels after polyacrylamide gel
electrophoresis (PAGE) and spectrophotometrically using a Coomassie
Plus protein assay kit (Pierce). A rabbit was injected with 100 µg of
this preparation in complete Freund's adjuvant. Beginning 3 weeks
after the first inoculation, the animal was subjected to three boosts of 30 µg at 14-day intervals in incomplete Freund's adjuvant. One
week after the final boost, the animal was bled and the serum was
prepared for use in this study.
Assay for AN activity using [3H]DNA.
E.
coli DNA was labeled with [3H]thymidine as described
elsewhere (13), and assays for AN activity were similar to
the procedures of Goldstein and Weller (9). Two micrograms
(about 240,000 cpm) of labeled single-stranded DNA plus 4 µg of
single-stranded salmon sperm DNA were mixed with 10 ng of
affinity-purified AN. Standard conditions used were 200 µl of 50 mM
Tris (pH 9.0) per ml-5 mM Mg2+-0.1 mg of bovine serum
albumin (BSA) per ml at 37°C for 20 min. The digested DNA was mixed
with 0.25 mg of BSA, precipitated with 5% trichloroacetic acid and
microcentrifuged for 5 min. The supernatant was mixed with 3.5 ml of
scintillation cocktail (formula A-989; Packard, Inc.) and counted.
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RESULTS AND DISCUSSION |
Baculovirus AN homologs.
Five baculovirus homologs of
the herpesvirus AN are aligned in Fig.
1A. These ORFs are from AcMNPV
(orf133) (2), Orgyia pseudotsugata
MNPV (OpMNPV) (orf131)
(1), Lymantria dispar MNPV
(LdMNPV) (orf157) (19),
Choristoneura fumiferana MNPV (CfMNPV) (A. Poloumienko and P. Krell, unpublished data [GenBank
accession no. AAB53344]), and a granulovirus of Xestia
c-nigrum (XcGV) (orf145) (12). The following
amino acid sequence identities of the predicted baculovirus ORFs were
observed: OpMNPV and CfMNPV, 80%;
OpMNPV and CfMNPV to AcMNPV,
53%; OpMNPV, CfMNPV, and
AcMNPV to LdMNPV, 37 to 40%;
and XcGV to the NPVs, about 30%. The sequence identity is concentrated
in the N-terminal 240 amino acids with six regions of limited sequence
variation. Several of these regions are related to conserved motifs
found in herpesvirus AN (9, 16). The baculovirus motif I,
Ia, II, and III sequences are 15/16, 3/3, 5/11, and 6/11
identical to the corresponding alphaherpesvirus consensus sequence
(Fig. 1B). There is a highly conserved domain at amino acids 190 to 200 that does not appear to correspond to a herpesvirus motif. In
addition, there is a conserved region that shows limited homology to
motif VI. The baculovirus predicted proteins are about 200 amino acids
shorter than those from HSV-1 (Fig. 1B). This is evident in a
significantly truncated baculovirus amino-terminal region upstream of
motif I (218 amino acids in HSV-1, versus 56 in
AcMNPV). A form of the HSV-1 AN has been described that results from initiation at an internal ATG codon such that it too
lacks a significant portion (126 amino acids) of this N-terminal region
(5). It has been found to retain its enzymatic activity and
is capsid associated. However, the predicted baculovirus AN sequences
all also lack motifs IV, V, and VII. In addition, the region
between motifs III and VI contains 151 amino acids in HSV-1, versus about 40 in AcMNPV (Fig. 1B), but the
distance from motif VI to the C terminus is longer in
AcMNPV (180 amino acids, versus 112 in HSV-1).


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FIG. 1.
Comparison of baculovirus AN sequences. (A)
Alignment of baculovirus sequences. Indicated are:
AcMNPV (ac133) (2), CfMNPV
(cfexo) (Poloumienko and Krell, unpublished),
OpMNPV (op131) (1),
LdMNPV (ld157) (19), and XcGV (xc145)
(12). The domains conserved with the
Herpesviridae AN are boxed. Dots indicate positions where
all amino acids are identical, and dashes indicate gaps in the
alignment. (B) Comparison of conserved domains between HSV-1
(9) and baculovirus AN. Below are shown the sequences with
the consensus Baculoviridae (bac) (four out of five
identical) and Herpesviridae (hpv) sequences indicated.
Asterisks indicate nonconsensus amino acids. The mutations within motif
II that were constructed and tested are also shown.
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Expression and purification of AcMNPV orf133.
Since amino-terminal regions of the homologs of
AcMNPV orf133 are highly variable (Fig. 1), we
reasoned that alteration of amino-terminal amino acids would be
unlikely to affect the activity of the enzyme. We used a
SalI site at nt 112551 on the AcMNPV genome (2) which is 9 nt upstream of the orf133 ATG and an NsiI site at nt 114845 that is about 1,000 nt downstream of
the stop codon in our cloning protocols. A His7-tagged
construct was expressed in bacteria, and the protein was processed
using a renaturing protocol that was successfully used to generate
active HSV-1 AN (4). However, we were unsuccessful in
generating an active protein using this technique. Therefore, we
constructed a recombinant baculovirus expressing a
His6-tagged version of orf133.
Sf-9 cells infected with the recombinant Ac
MNPV
expressing orf133 were processed using a combination of ammonium
sulfate precipitation
and affinity chromatography (Fig.
2A). The resuspended ammonium
sulfate
precipitate is shown in Fig.
2A, lane 1. After binding
of this extract
to the affinity resin, the unbound material looked
similar to the
starting material (lane 2). The resin was washed
initially without
imidazole (lane 3) and then with buffer containing
10 mM imidazole
(lane 4). A slight amount of protein was evident
in the latter wash
(lane 4). When treated with 30 mM imidazole,
two major Coomassie
blue-stained bands of about 43 and 53 kDa
were eluted (lane 5).
Subsequent washes with 30 and 50 mM imidazole
showed similar elution
profiles (lanes 5 to 12). Elution with
100 mM imidazole yielded only a
small amount of these two bands.

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FIG. 2.
Purification and characterization of His-tagged alkaline
exonuclease. Sf-9 cells were infected with baculovirus expressing the
His-tagged AN gene and affinity purified as described in Materials and
Methods. (A) PAGE analysis of affinity purification. Lane 1, infected
cell extract (CE) after dialysis; lane 2, flowthrough (FT) from the
TALON resin; lane 3, W4 without imidazole; lanes 4 to 14, W8 with 10 mM
imidazole and elution with imidazole at 30 mM (lanes 5 to 8; E1 to E4),
50 mM (lanes 9 to 12; E5 to E8), and 100 mM (lanes 13 and 14; E9 and
E10). Lanes 1 and 2 represent 5 µl of the 5.0-ml dialysate before and
after binding the affinity resin; lanes 3 to 14 represent 15 µl from
1-ml fractions. Samples were analyzed by PAGE through a 10% gel and
stained with Coomassie brilliant blue. The positions of selected size
standards (Life Technologies 10-kDa ladder) are shown on the left, and
the estimated masses (in kilodaltons) of the polypeptides binding to
the affinity resin are shown at the right. (B) Identification of
His-tagged polypeptides. The enzyme was characterized using the INDIA
HisProbe-HRP reagent (Pierce) according to the manufacturer's
instructions. Lane 1, uninfected Sf-9 cells (Sf); lane 2, wt
AcMNPV-infected Sf-9 cells (Wt). Lanes 3 to 8 are
from the samples described for panel A.
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To determine whether these bands were composed of His-tagged
recombinant AN, we used a reagent that specifically stains His-tagged
proteins (Fig.
2B). We found that extracts from uninfected Sf-9
cells
(lane 1) or wt Ac
MNPV-infected cells (lane 2)
showed no
evidence of a reactive His-tagged protein. However, when
fractions
described above were examined, we found that the starting
material
before affinity purification contained a His-tagged protein
(lane
3), as did fractions E2, E6, and E9. This demonstrated that the
two major bands of 43 and 53 kDa were His-tagged molecules and
indicated that the His-tagged An was present as two species; one
full
length (53 kDa) and a shorter (43-kDa) form that apparently
retained
the N-terminal His tag and therefore likely lacked the
carboxyl
terminus.
Nuclease activity of affinity-purified AN.
To determine if the
purified His-tagged protein had nuclease activity, we tested it with
both linear and supercoiled DNA templates at neutral and alkaline pH
(Fig. 3). We found that under the
conditions that we examined, most of the linear template was degraded
in 20 min at pH 9.0, whereas at pH 7.0 most of the starting material remained at 60 min (Fig. 3A). In contrast, the effect on supercoiled templates was not nearly so dramatic. At pH 9, there appeared to be an
initial conversion of some DNA to linear-sized fragments at 1 min (Fig.
3B). Although this linear DNA was subsequently degraded, substantial
amounts of the supercoils remained after 20 min. The effect at pH 7 was
even less than at pH 9, with some conversion to linear-sized DNA at 1 min; however, by 60 min almost all of the supercoiled DNA remained.
Therefore, the purified AN has a strong preference for linear over
supercoiled DNA and showed the highest levels of activity at an
alkaline pH, suggesting that the baculovirus-encoded protein is an
alkaline exonuclease.

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FIG. 3.
Characterization of AN activity on DNA at pH 7.0 and
9.0. (A) Time course of digestion of linear pKS( ) DNA at the times
and pH indicated. Qiagen column-purified pKS( ) was linearized with
EcoRI. DNA (0.2 µg) was mixed with 10 ng of
affinity-purified enzyme and incubated for various times in 200 µl of
the standard buffer (50 mM Tris-HCl, 5 mM MgCl2) at 37°C
and the indicated pH. The digests were then electrophoresed on a 1.0%
agarose gel. (B) Time course of digestion of supercoiled pKS DNA at the
times and pH indicated. Supercoiled DNA (0.2 µg) for each sample was
processed as described above. Positions of markers (M) are indicated in
kilobases.
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Characterization of the AcMNPV alkaline
exonuclease.
We characterized the properties of the baculovirus AN
in more detail by quantifying its ability to hydrolyze
3H-labeled linear DNA (Fig.
4). We found that the optimal temperature was 35°C (Fig. 4A), and as expected from Fig. 3, the highest activity was observed in an alkaline pH range of 9 to 10 (Fig. 4B). Divalent cations were required for activity, and the enzyme showed optimal activity over a broad range (2 to 10 mM); Mg2+ gave about a
10-fold-higher level of activity than Mn2+ (Fig. 4C). The
enzyme did not appear to require salt, and increasing concentrations
were inhibitory (Fig. 4D). These optimal conditions are similar to
those reported for HSV-1 AN with the exception of salt concentration,
for which the HSV-1 enzyme showed a broad optimum of up to 40 mM
(4).

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FIG. 4.
Effects of temperature (A), pH (B), divalent cations
Mg2+ and Mn2+ (C), and salt concentration (D)
on purified AcMNPV alkaline exonuclease activity.
For these experiments, single-stranded DNA (2 µg of labeled DNA plus
4 µg of salmon sperm DNA) was mixed with 10 ng of purified AN.
Samples were prepared for each condition tested and then incubated for
20 min. Standard conditions were 37°C, 50 mM Tris (pH 9.0), 5 mM
MgCl, and 0.1 mg of BSA per ml in 200 µl unless otherwise indicated.
The digested DNA was mixed with 0.25 mg of BSA, then precipitated with
5% trichloroacetic acid, and centrifuged for 5 min in a
microcentrifuge; the supernatants were mixed with 3.5 ml of
scintillation cocktail (formula A-989; Packard) and counted. All
samples were done in triplicate, and each point represents an average
of the values. Very little deviation from the average was observed.
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The fact that the baculovirus-encoded enzyme has properties similar to
those of the enzyme characterized from HSV-1 suggests
that the shared
motifs (I, Ia, II, III, and VI) may contribute
to this activity, but
the other motifs common to the
Herpesviridae but lacking in
the
Baculoviridae (IV, V, and VII) (Fig.
1) may
be involved
in some other
function.
Mutations in a highly conserved domain.
To ensure that the
enzyme activity that we observed was due to the affinity-purified
recombinant AN (rAN) and not contamination from the endogenous AN
encoded by the virus or from a cellular enzyme, we constructed a number
of mutants with single amino acids altered at positions in motif II
that are conserved in all baculovirus and herpesvirus sequences (Fig.
1B). Selected mutations in this region of the HSV-1 AN led to
inactivation of the enzyme (9). We produced three mutations
in this region: amino acid mutations G141A and S146A and deletion of
amino acids 142 to 148. The His-tagged rAN and two of the mutants were
expressed and could be detected by Western blot analysis using a rabbit
antiserum that we generated against a bacterially expressed form of the
protein (Fig. 5, lanes 1 to 3). However,
the mutant with amino acids 142 to 148 deleted was apparently unstable
and was not evident in extracts of cells infected with recombinant
viruses expressing this construct. An immunoreactive band was not
observed in affinity-purified extracts from uninfected Sf-9 cells or
cells infected with wt AcMNPV (lane 4 or 5, respectively). In contrast, the antiserum reacted with an
appropriate-sized band in extracts that had not been affinity purified
from cells infected with either wt virus or the recombinant virus
expressing His-tagged rAN (lane 6 or 7, respectively).

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FIG. 5.
Western blot analysis of wt and mutant AN. AN was
purified as described in Materials and Methods. Samples include
His-tagged rAN (lane 1) and the mutants indicated (lanes 2 and 3).
Controls show that there is no material binding to the affinity resin
from extracts of uninfected Sf-9 cells (lane 4) or wt
AcMNPV-infected cells (lane 5). For these control
assays (lanes 4 and 5), the cells were carried through the purification
protocol, fractions E6 and E7 (Fig. 2) were pooled, and about three
times the volume used for the His-tagged enzyme-containing extracts
(about 24 µl) was loaded onto the gel. Lanes 6 and 7 contain 10 µl of dialysate from cells infected with wt
AcMNPV and recombinant AcMNPV
expressing AN, respectively. Samples were electrophoresed through
sodium dodecyl sulfate-10% polyacrylamide gels (20) and
electroblotted onto polyvinylidene difluoride membranes (Micron
Separations, Inc.) for 2 h at 185 mA; then, Western blot analyses
were carried out as previously described (27). Samples were
treated with 1:1,000 dilution of the antiserum, and the second antibody
(goat anti-rabbit conjugated to horseradish peroxidase; Promega) was
used at 1:2,500. The positions of selected size standards are shown in
kilodaltons on the left. The estimated values for the major
immunoreactive bands are shown on the right.
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We then examined the ability of the affinity-purified mutant protein to
hydrolyze linear [
3H]DNA (Fig.
6). We found that G141A showed about 35%
the activity
of the rAN, whereas S146A showed less than 10% the
activity of
the nonmutant enzyme. No activity was evident from
affinity-purified
extracts of cells that had been infected with wt
virus indicating
that, as expected, the native enzyme which would lack
the His
tag was not affinity purified by our protocol (Fig.
6, lane 4).
These data indicated that the wt enzyme was not a major contaminant
of
our affinity-purified preparations, and as with HSV-1 AN
(
9),
motif II is critical for the activity of the
baculovirus enzyme.

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FIG. 6.
Quantification of activity of mutant and wt AN. For
details, see Materials and Methods. All samples were done in
triplicate, and the error bars represent 1 standard deviation. The
experiment is representative of at least two different infection and
extract preparations for each mutant virus. Lane 4 is a sample from wt
AcMNPV-infected cells processed as described in
the legend to Fig. 5.
|
|
Construction of a mutant of AcMNPV with AN
deleted.
In an attempt to construct a mutant of
AcMNPV with the AN gene inactivated, we
constructed a plasmid with the
-galactosidase gene under the control
of the Drosophila heat shock promoter inserted within the AN
gene such that the gene was disrupted and a portion was deleted. We
used cotransfection with the wt virus and linearized plasmid DNA to
produce the deletion mutants. We isolated and extensively plaque
purified a number of isolates expressing
-galactosidase. However,
upon PCR analysis, we found that although the
-galactosidase-expressing construct was present in the genome, the
wt gene was also present. In addition, attempts to delete the AN
homolog from the Bombyx mori NPV genome have been
unsuccessful (S. J. Gomi, personal communication). The data from both
of these viruses suggest that this enzyme plays a vital role in the
baculovirus replication cycle.
Characterization of AN expression in AcMNPV-infected
cells.
The anti-AN antiserum that we prepared against bacterially
expressed, His-tagged AN was used to examine the time course of infection of AN in AcMNPV-infected cells (Fig.
7). As a control we used the
affinity-purified recombinant AN (Fig. 7, lane 1). We found that a
polypeptide of the predicted molecular mass (48 kDa) was first observed
at about 12 h postinfection (p.i.) and the peak level of
expression occurred at 24 h p.i., consistent with late gene
expression. There is a possible RNA polymerase II promoter (TATTT) and
mRNA start site consensus sequence (CAGT) (3) starting about
140 nt upstream of the predicted initiation codon. There is also a late
promoter element (GTAAG) located 22 nt upstream of the ATG
(2). This suggests that AcMNPV AN may be expressed as both an early and a late gene. There was also a
smaller, 38-kDa band present at a lower concentration that may represent a breakdown product similar to that observed with rAN (Fig.
2); however, an immunoreactive band of this size was also observed in
extracts of uninfected cells.

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|
FIG. 7.
Western blot analysis of AN expression in extracts of
infected insect cells. Monolayers of Sf-9 cells were infected with
AcMNPV at a multiplicity of infection of 10 and
prepared as previously described (28). Lane 1, rAN (300 ng);
lanes 3 to 10, time course of wt AN expression in
AcMNPV-infected Sf-9 cells. The hour postinfection
is indicated above the lanes; sizes are indicated in kilodaltons.
|
|
We previously reported the presence of a nuclease active against linear
DNA templates in nuclear extracts of
Ac
MNPV-infected
cells that were used for in
vitro transcription assays (
8).
Although the extracts from
uninfected or early infected cells
lacked the nuclease activity, those
at 24 h p.i. showed a high
level of activity. The reaction
conditions for these investigations
were buffered at pH 8.4, which is
well within the active range
of the AN we have described in this
report. A nuclease activity
associated with baculovirus infection was
also reported by others
(
6). It is likely that the
Ac
MNPV AN that we have characterized
is
responsible for the nuclease activities described in these
reports.
 |
ACKNOWLEDGMENTS |
We thank Doug Leisy for reviewing the manuscript and Doug
Grossenbach and Dennis Hruby for assistance in characterization of
His-tagged proteins.
This project was supported by a grant from the NSF (MCB-9630769).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Nash Hall 220, Department of Microbiology, Oregon State University, Corvallis, OR
97331-3804. Phone: (541) 737-1793. Fax: (541) 737-0496. E-mail:
rohrmann{at}bcc.orst.edu.
Technical Report no. 11656 from the Oregon State University
Agricultural Experiment Station.
 |
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Journal of Virology, July 2000, p. 6401-6407, Vol. 74, No. 14
0022-538X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
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