INTRODUCTION

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Lentiviruses can be divided into two subgroups based on whether they express an RNA sequence-dependent transcriptional transactivator functionally equivalent to the human immunodeficiency virus type 1 (HIV-1) Tat protein (reviewed in references 10 and 35). All primate lentiviruses, as well as equine infectious anemia virus (EIAV) and bovine immunodeficiency virus (BIV), encode an HIV-1 Tat homolog (4-7, 13, 16, 25, 37). In contrast, feline immunodeficiency virus and the ovine and caprine lentiviruses lack an equivalent RNA sequence-dependent transcriptional activator (11, 29).

In addition to its unique RNA sequence dependence, HIV-1 Tat (hTat) is also unusual in that it acts mainly at the level of transcription elongation rather than initiation (14, 22). hTat activity requires the recruitment of both hTat and a cellular cofactor, termed cyclin T1 (CycT1), to the HIV-1 TAR (hTAR) RNA stem-loop structure (2, 18, 38, 42). CycT1, together with cdk9, forms part of positive transcription elongation factor b (P-TEFb) (27, 38, 39). Recruitment of P-TEFb to TAR has been proposed to be both necessary and sufficient for activation of transcription elongation from the HIV-1 long terminal repeat (LTR) promoter (3).

Binding of hTat and CycT1 to hTAR is highly cooperative. Thus, human CycT1 (hCycT1) is unable to bind hTAR in the absence of hTat, and hTat binding to hTAR, while detectable, is very inefficient in the absence of hCycT1 (2, 4, 20, 26, 38). Recruitment of the hTat-hCycT1 heterodimer to hTAR involves a direct interaction between hTat and a U-rich RNA bulge, while hCycT1 is believed to bind the TAR terminal loop (12, 26, 32, 38, 41). Interestingly, the ability of CycT1 to bind TAR is not evolutionarily conserved, so that the murine CycT1 (mCycT1) protein, for example, can bind to hTat but is unable to mediate the recruitment of the hTat-mCycT1 heterodimer to hTAR (2, 18). This deficiency, which results from a single amino acid difference between mCycT1 and hCycT1 (2, 17, 18, 24), renders hTat inactive in murine cells and can explain the observed species tropism of hTat (1, 26).

Analysis of Tat function in HIV-2, in the simian immunodeficiency viruses (SIVs), and in the distantly related EIAV has demonstrated that these Tat proteins also recruit CycT1 to their cognate TAR elements and, in particular, has revealed that TAR binding by the relevant Tat-CycT1 heterodimer is again highly cooperative (4, 5, 38). Further, HIV-2, SIV, and EIAV Tat all show species tropisms, and this is again due to the inability of the CycT1 proteins present in certain species to contribute to TAR binding (1, 4, 5, 26). Thus, both hCycT1 and equine CycT1 bind EIAV Tat, but the former differs from the latter in being unable to mediate binding of the resultant heterodimer to EIAV TAR (4).

While CycT1 is critical for both transcriptional activation and TAR binding by the Tat proteins enumerated above, it has been proposed that BIV Tat (bTat) is distinct in being competent for efficient BIV TAR (bTAR) binding in the absence of any cellular cofactor (7). Thus, the 17-amino-acid basic domain of bTat was shown to bind to bTAR with high affinity and specificity in vitro and could also efficiently recruit a fused heterologous effector domain to bTAR when expressed in bacteria (7, 20, 31). While these earlier experiments did not address a possible role for CycT1 in facilitating bTAR binding by bTat, the similarity in domain organization of bTat and hTat, and in particular the conservation of the cysteine-rich and core domains that mediate CycT1 binding to hTat (2, 16, 23, 25, 26, 38), suggests that CycT1 is likely to play a role in mediating bTat function.

In this report we present data strongly supporting the hypothesis that bTat, like hTat, SIV Tat, and EIAV Tat, activates viral gene expression by recruitment of the cellular P-TEFb transcription factor. However, bTat is shown to differ from these other lentiviral Tat proteins in that bTAR binding by the bTat-CycT1 heterodimer is no more efficient than binding by bTat alone.

	MATERIALS AND METHODS

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Construction of molecular clones. The indicator plasmids pHIV/hTAR/CAR and pHIV/SLIIB/CAT have been previously described (4, 26, 36). Plasmid pHIV/bTAR/CAT was constructed by substituting bTAR in place of hTAR in pHIV/hTAR/CAT. Unique BglII and SacI sites allowed the excision of hTAR and the subsequent insertion of annealed oligonucleotides encoding the entire bTAR sequence.

Vertebrate cell transfection assays. Human 293T cells were transfected by the calcium phosphate method (9) with 500 ng of reporter plasmid (pHIV/bTAR/CAT, pHIV/hTAR/CAT, or pHIV/SLIIB/CAT) and 200 ng of effector plasmid (pbTat, pRev-bTat, pRev-C38S, pcTat, or pBC12/CMV as a negative control). In addition, 1,000 ng of pBC12/CMV and 50 ng of the pBC12/CMV/-gal internal control plasmid were added to each transfection. Mouse L cells and quail QCl-3 cells were transfected using DEAE-dextran (8, 9). At 48 h after transfection, induced levels of chloramphenicol acetyltransferase (CAT) and -galactosidase (-Gal) activity were determined as previously described (2, 26).

Protein-protein and RNA-protein interactions in yeast. For two-hybrid assays (15), Saccharomyces cerevisiae Y190 cells were transformed with pGBT9, pGBT9/bTat, or pGBT9/C38S and either pVP16, pVP16/hCycT1, or pVP16/mCycT1. For three-hybrid assays (33), L40uraMS2 yeast cells (Invitrogen) were transformed with three expression plasmids expressing a hybrid MS2-(b or h)TAR RNA, the VP16-bTat (wild type or C38S), or VP16-hTat fusion protein, along with unfused human or murine CycT1. In other experiments, L40uraMS2 yeast cells were instead transformed with a hybrid RNA expression plasmid, an expression plasmid encoding nonfusion bTat or C38S and an expression plasmid encoding either the VP16-mCycT1 or VP16-hCycT1 fusion protein. After growth on selective media, -Gal activity in cell lysates was determined as previously described (2-5).

RNA gel shift analyses. Recombinant GST-bTat, GST-hTat, and GST-hCycT1 were expressed in the BL21 codon plus strain of Escherichia coli and affinity purified as previously described (4). A ³²P-labeled bTAR RNA probe was generated by in vitro transcription using T7 RNA polymerase and the linearized plasmid pGEM3/bTAR. RNA-protein interactions were then analyzed by electrophoretic mobility shift assay as previously described (4).

	RESULTS

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As noted above, the Tat proteins encoded by HIV-1 and EIAV show distinct species tropisms. As tethering to the viral LTR via a heterologous RNA binding domain fully rescues both hTat function in otherwise nonpermissive rodent cells and EIAV Tat function in nonpermissive human cells (1, 26), these tropisms must largely reflect inefficient recruitment of Tat to TAR. Therefore, if bTat binding to bTAR is indeed cofactor independent, one might predict that bTat would not show a comparable species tropism. Earlier reports have not resolved this issue, as bTat has been reported to be active in bovine, human, and murine cells but poorly active in lapine cells (16). Also, while the bTat protein has been reported to activate the HIV-1 LTR in certain tissue culture cell lines (16, 25), in vitro data indicate that bTat binding to bTAR is far more efficient than binding to hTAR (7).

To address the species tropism and RNA sequences specificity of bTat, we cotransfected human 293T cells, murine L cells, and quail QCl-3 cells with expression plasmids encoding either hTat or bTat and indicator constructs consisting of the cat indicator gene linked to either the wild-type HIV-1 LTR or an HIV-1 LTR in which hTAR had been replaced by bTAR. By comparing indicator constructs in which only the TAR element was varied, confounding effects resulting from the presence or absence of transcription factors that bind the U3 regions of the HIV-1 or BIV LTR are avoided.

As previously reported (2, 8), hTat efficiently activated expression of a cat indicator gene linked to the wild-type HIV-1 LTR in human cells but was only weakly active in the tested murine and avian cells (Fig. 1). No hTat-induced activation of the modified HIV-1 LTR containing the bTAR RNA element was detected. In contrast, bTat potently activated cat gene expression directed by the HIV-1 LTR containing bTAR in all three cell lines tested. However, bTat had only a very weak activating effect on wild-type HIV-1 LTR-driven cat gene expression (Fig. 1). These data therefore suggest that bTat function is indeed less subject to species restriction than is hTat function and are consistent with a previous report (7) demonstrating that bTAR is a better target for bTat binding than is hTAR.

View larger version (22K): [in this window] [in a new window]   FIG. 1.   Comparison of hTat and bTat function in cells from three distinct species. Human 293T cells, murine L cells, and avian QCl-3 cells were transfected with indicator constructs consisting of the wild-type HIV-1 LTR, or an HIV-1 LTR in which the hTAR element had been substituted with bTAR, linked to the cat gene. These plasmids were cotransfected with pBC12/CMV-based expression constructs expressing full-length hTat or bTat as well as a pBC12/CMV-based internal control plasmid encoding -Gal. Plasmid pBC12/CMV also served as a negative control. Cultures were harvested at ~48 h after transfection, and CAT and -Gal activities were determined as described elsewhere (2-5). The indicated data are corrected for minor differences in transfection efficiency, as measured by the -Gal internal control, and are representative of three independent transfection experiments.

The bTat protein binds CycT1 specifically. The conserved cysteine-rich domain of hTat is critical for both CycT1 binding and hTat function, and mutation of cysteine 22 in hTat to serine (C22S) therefore blocks both of these activities (2, 23, 26). Because hTat cysteine 22 is conserved in bTat (16, 23, 25), we examined whether mutation of the equivalent residue, i.e., mutation of bTat cysteine 38 to serine (C38S), would also affect bTat function and CycT1 binding. As we do not have access to a bTat-specific antiserum, we performed this mutational analysis in the context of an HIV-1 Rev-bTat fusion protein that can be readily detected using an anti-Rev antiserum. Further, in the case of hTat, we and others have previously demonstrated that an hTat-Rev fusion protein can potently activate an HIV-1 LTR in which the hTAR element has been replaced with Rev response element stem-loop IIB (SLIIB), the RNA target for HIV-1 Rev (19, 26, 34). As shown in Fig. 2A, bTat and the Rev-bTat fusion protein equivalently activate cat gene expression directed by the HIV-1 LTR containing the bTAR RNA target when tested by cotransfection into 293T cells. When the bTat and Rev-bTat proteins were instead coexpressed with an indicator construct containing the HIV-1 LTR linked to the SLIIB RNA binding site for Rev (4, 26, 36), the Rev-bTat fusion protein proved highly active whereas the bTat protein was, as expected, inactive. Thus, bTat, like hTat, can activate HIV-1 LTR-dependent gene expression when tethered to a heterologous promoter-proximal RNA target. In contrast, a fusion protein containing wild-type Rev fused to the C38S mutant of bTat was inactive on both indicator constructs (Fig. 2A), even though Rev-bTat and Rev-C38S were expressed at equivalent levels, as determined by Western analysis using an anti-Rev antiserum (Fig. 2C). As the C38S mutation inactivates Rev-bTat function via both bTAR and SLIIB (Fig. 2A), this inhibition must occur by a mechanism independent of RNA targeting, i.e., most probably by blocking cofactor recruitment.

View larger version (16K): [in this window] [in a new window]   FIG. 2.   Interaction of bTat with CycT1. (A) Mutation of the bTat cysteine motif blocks bTat function. Human 293T cells were cotransfected with either the pHIV/bTAR/CAT or pHIV/SLIIB/CAT indicator construct together with an effector plasmid encoding bTat or the Rev-bTat or Rev-C38S fusion protein. Data were derived as described in the legend to Fig. 1. (B) The bTat protein binds CycT1 specifically. The S. cerevisiae two-hybrid indicator strain Y190 was transformed with plasmids expressing the GAL4 DNA binding domain fused to wild-type or mutant bTat and with plasmids expressing the VP16 transcription activation domain in an unfused form (Neg.) or fused to wild-type hCycT1 or mCycT1. Induced -Gal activities were determined as previously described (2-5) after selection for transformants. (C) Western analyses of GAL4 fusion protein expression levels in yeast (lanes 1 to 4) and Rev fusion expression in 293T cells (lanes 5 to 7) were performed using a commercial GAL4 DNA binding domain antibody or a rabbit polyclonal anti-Rev antiserum as previously described (3). Neg., control cells not expressing a GAL4 (lane 1) or Rev (lane 5) fusion protein. OD 595 (here and in Fig. 3 and 4), optical density at 595 nm.

The bTat protein binds bTAR effectively in the absence of CycT1. We next asked whether bTat would bind bTAR cooperatively with CycT1 in vivo or whether bTat binding to bTAR would instead be unaffected by CycT1. For this purpose, we used the three-hybrid RNA-protein interaction assay in yeast (33). The tested plasmids express RNA hybrids consisting of the MS2 operator linked to either hTAR or bTAR and protein hybrids consisting of the VP16 activation domain linked to full-length hTat or bTat.

View larger version (26K): [in this window] [in a new window]   FIG. 3.   The bTat and hTat proteins differ in the ability to bind their cognate TAR elements. In these three-hybrid protein-RNA interaction assays, S. cerevisiae L40uraMS2 cells were transformed with an expression plasmid encoding the MS2 operator linked to full-length hTAR (A) or bTAR (B). In addition, these cells were transformed with a plasmid encoding the VP16 activation domain fused to hTat, bTat, or the C38S bTat mutant and finally with a plasmid encoding the nonfused form of hCycT1 or mCycT1. The appropriate empty vectors served as negative controls. Induced -Gal activity was measured in pooled transformants as previously described (2-5).

View larger version (29K): [in this window] [in a new window]   FIG. 4.   The bTat protein can recruit CycT1 to bTAR. This yeast three-hybrid assay was performed essentially as described for Fig. 5 except that the CycT1 proteins were expressed as VP16 fusions whereas bTat and the C38S bTat mutant were expressed in a nonfused form.

View larger version (39K): [in this window] [in a new window]   FIG. 5.   The bTat protein binds bTAR in vitro. In this RNA gel shift experiment, a labeled bTAR RNA probe was incubated with the indicated recombinant GST fusion proteins, and the resultant RNA-protein complexes were then resolved by nondenaturing gel electrophoresis. C1 indicates the position of the proposed bTAR-bTAT complex, while C2 indicates the position of the proposed bTAR-bTat-CycT1 ternary complex.

	DISCUSSION

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The mechanism of action of the essential HIV-1 Tat transcription factor now appears fairly well understood (10, 35). The Tat protein first binds to the CycT1 component of P-TEFb via the Tat cysteine and core motifs (2, 18, 38), and the resultant Tat-CycT1 heterodimer then binds the TAR element. This binding, which is highly cooperative, is mediated by direct interactions between the Tat basic domain and a TAR RNA bulge and, most probably, between CycT1 and the terminal TAR loop (12, 26, 32, 38, 41). Subsequently, the cdk9 component of P-TEFb is believed to activate efficient elongation from the HIV-1 LTR promoter by phosphorylating the carboxy-terminal domain of initiated RNA polymerase II molecules, and also possibly other substrates (3, 10, 19, 27, 35, 38, 40-42). Recent evidence demonstrating that the HIV-1 LTR can be fully activated if P-TEFb is recruited to the promoter by tethering to a heterologous RNA target (3, 19) suggests that P-TEFb recruitment, either by Tat or by some other means, is both necessary and sufficient for activation of viral transcription. Reports examining the mechanism of action of the HIV-2, SIV, and EIAV Tat proteins demonstrate that CycT1 is also critical for both TAR recruitment and activation of transcription in these other lentiviruses (4, 5).

As EIAV Tat shares far less sequence homology with hTat than does bTat (4), it was surprising that the isolated bTat basic domain had, uniquely, been reported to be fully competent for binding to bTAR (7, 20, 34). We hypothesized that an analysis of bTAR binding by full-length bTat in vivo might therefore reveal cooperative binding with CycT1, as previously reported for all other lentiviral Tat proteins (4, 5). However, as clearly demonstrated in this report, full-length bTat is in fact competent to bind to bTAR in the absence of CycT1 both in vivo (Fig. 3) and in vitro (Fig. 5), and our data therefore fully confirm the earlier work of Frankel and coworkers (7, 20, 34). Nevertheless, bTat, like all other Tat proteins, does bind to CycT1 specifically (Fig. 2B) and can recruit CycT1, and hence presumably P-TEFb, to the viral TAR element (Fig. 4 and 5). Because bTat does not depend on CycT1 for assistance in binding TAR (Fig. 3), bTat should differ from hTat in being able to recruit a wider range of CycT1 proteins to TAR, as is indeed demonstrated in Fig. 4 using mCycT1. This presumably explains the ability of bTat to function in a wider range of species than hTat (Fig. 1).

It is of interest to speculate as to why bTat has evolved a functionally autonomous RNA binding domain while all other Tat proteins can bind to TAR only as part of a CycT1-Tat heterodimer. One advantage of this latter strategy is that free Tat would not be able to compete with CycT1-Tat complexes for TAR binding, thus preventing any inhibition of transactivation by free Tat when Tat expression is saturating. Possible advantages of the noncooperative RNA binding strategy exhibited by bTat include the expanded potential species host range mentioned above and, perhaps, the ability to recruit a form of P-TEFb lacking CycT1 to TAR, i.e., a P-TEFb variant that contains one of the two known isoforms of CycT2 (30). We and others have, in fact, previously shown that a CycT2 mutant, differing by only one residue from wild-type CycT2, can fully support HIV-1 Tat function in vivo, although wild-type CycT2 is normally unable to bind to hTat (2, 5, 24). In contrast, we have observed that bTat can specifically bind to both isoforms of wild-type CycT2 in vivo and that CycT2 can, in fact, be recruited to bTAR as efficiently as CycT1 in the yeast three-hybrid assay (data not shown). As bTat is active in all cells tested, it has not been possible to confirm that this is a functionally relevant interaction by, for example, rescuing bTat function by expression of human CycT2 in trans. Nevertheless, this observation does raise the possibility that bTat, unlike hTat, may be able to utilize all forms of P-TEFb, as opposed to only the dominant CycT1 variant, for activation of viral gene expression. CycT1 is known to be expressed at low levels in, for example, resting T cells (21, 39), and the ability of bTat to recruit forms of P-TEFb lacking CycT1 to bTAR could therefore enhance bTat-dependent BIV gene expression, and hence replication, in certain contexts.