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Journal of Virology, January 2000, p. 483-492, Vol. 74, No. 1
0022-538X/0/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
cis Expression of the F12 Human Immunodeficiency Virus
(HIV) Nef Allele Transforms the Highly Productive NL4-3 HIV Type 1 to
a Replication-Defective Strain: Involvement of both Env gp41
and CD4 Intracytoplasmic Tails
Eleonora
Olivetta,1
Katherina
Pugliese,1
Roberta
Bona,1
Paola
D'Aloja,1
Flavia
Ferrantelli,1
Anna Claudia
Santarcangelo,1
Gianfranco
Mattia,2
Paola
Verani,1 and
Maurizio
Federico1,*
Laboratory of
Virology1 and Laboratory of Clinical
Biochemistry,2 Istituto Superiore di
Sanità, Rome, Italy
Received 12 March 1999/Accepted 10 September 1999
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ABSTRACT |
F12 human immunodeficiency virus type 1 (HIV-1) nef is
a naturally occurring nef mutant cloned from the provirus
of a nonproductive, nondefective, and interfering HIV-1 variant
(F12-HIV). We have already shown that cells stably transfected with a
vector expressing the F12-HIV nef allele do not
downregulate CD4 receptors and, more peculiarly, become resistant to
the replication of wild type (wt) HIV. In order to investigate the
mechanism of action of such an HIV inhibition, the F12-HIV
nef gene was expressed in the context of the NL4-3 HIV-1
infectious molecular clone by replacing the wt nef gene
(NL4-3/chi). Through this experimental approach we established the
following. First, NL4-3/chi and nef-defective (
nef) NL4-3 viral particles behave very similarly in
terms of viral entry and HIV protein production during the first
replicative cycle. Second, no viral particles were produced from cells
infected with NL4-3/chi virions, whatever the multiplicity of infection used. The viral inhibition apparently occurs at level of viral assembling and/or release. Third, this block could not be relieved by
in-trans expression of wt nef. Finally,
NL4-3/chi reverts to a producer HIV strain when F12-HIV Nef is deprived
of its myristoyl residue. Through a CD4 downregulation competition
assay, we demonstrated that F12-HIV Nef protein potently inhibits the
CD4 downregulation induced by wt Nef. Moreover, we observed a
redistribution of CD4 receptors at the cell margin induced by F12-HIV
Nef. These observations strongly suggest that F12-HIV Nef maintains the
ability to interact with the intracytoplasmic tail of the CD4 receptor
molecule. Remarkably, we distinguished the intracytoplasmic tails of
Env gp41 and CD4 as, respectively, viral and cellular targets of the
F12-HIV Nef-induced viral retention. For the first time, the inhibition
of the viral life cycle by means of in-cis expression
of a Nef mutant is here reported. Delineation of the F12-HIV Nef
mechanism of action may offer additional approaches to interference
with the propagation of HIV infection.
 |
INTRODUCTION |
The in vivo role of human
immunodeficiency virus (HIV) and simian immunodeficiency virus (SIV)
Nef proteins has gained increasing consideration in the past few years,
both in experimental models (e.g., HIV-infected [35,
38] or nef transgenic SCID mice
[25], SIV-infected monkeys [28]) and
in humans, in which the presence of HIV genomes expressing heavily
mutated or even truncated forms of the nef gene was
correlated with an impaired progression of the disease (16, 29,
44). Of note, it has been proposed that the pathogenicity of
full-length HIV or SIV strains may be, at least in part, the
consequence of the effects that Nef elicits directly on immune system
(13).
On the other hand, conflicting results about the role of Nef in in
vitro HIV replication have been reported (11, 24, 37, 50).
There is now agreement that Nef induces the downregulation of both CD4
and major histocompatibility complex class I molecules (3, 21,
47) and dramatically improves the HIV replication efficiency in
"resting" peripheral blood lymphocytes (PBLs). The stimulating
effect of Nef in the HIV replication cycle acts in the producer cells
at the stage of virus formation and could be appreciated in the target
cells at the step of proviral DNA synthesis (2, 12, 46).
Conversely, a much smaller enhancing effect on viral replication has
been observed in both activated PBLs and immortalized cell lines
(11, 37, 50). Furthermore, Nef interacts with several types
of cellular kinases (for a review, see reference
43). The enhancement of HIV replication and the CD4
downregulation are the most accurately characterized functions of Nef.
From the provirus of a naturally occurring, nonproducer, and
interfering HIV-1 variant, we have recently cloned and characterized an
HIV-1 nef allele (F12-HIV nef) whose expression
in stably transfected cells fails to downregulate the CD4 receptors
and, more originally, induces an antiviral state (15).
Interestingly, despite the dramatic phenotypic differences with respect
to wild-type (wt) forms, this Nef mutant shows only three amino acid
substitutions (9) never detected at the same time in any
nef allele sequenced so far. Preliminary studies indicated
that the block of infecting HIV induced in cells stably expressing
F12-HIV Nef occurs at the stage of viral assembly and/or release
(15). In view of the uniqueness of its phenotype, we decided
to look more deeply at the molecular mechanism of the HIV inhibition
induced by F12-HIV Nef. We analyzed the phenotype of a chimeric HIV
molecular clone where the wt nef was replaced by the F12-HIV
gene (NL4-3/chi). We established that in-cis expression of
F12-HIV nef induces a complete block of viral replication
through a mechanism acting at the step of viral assembly and/or
release. Our efforts to determine both cellular and viral targets of
the F12-HIV Nef inhibitory effect allowed us to obtain strong
indications that the CD4-F12-HIV Nef interaction is involved in the
F12-HIV Nef-induced viral retention. This was consistently observed by
either transfecting or infecting cells lacking the expression of the
CD4 intracytoplasmic domain. Furthermore, data obtained by
cotransfecting an F12-HIV Nef expression vector together with diverse
env mutant HIV molecular clones highlight the Env gp41
intracytoplasmic tail as a major viral target of the F12-HIV Nef
inhibitory effect.
A model of HIV inhibition induced by in-cis expression of a
mutated nef allele is described here for the first time.
This seems only in part reminiscent of the negative trans
dominance previously reported for other structural or regulatory HIV
protein mutants (i.e., Gag, Rev, and Tat) (20, 33, 51).
Furthermore, our results allow us to propose novel molecular
interactions among Nef, the CD4 intracytoplasmic tail, and the HIV Env
gp41 glycoprotein.
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MATERIALS AND METHODS |
HIV molecular clones and expressing vectors.
In order to
obtain the NL4-3/chi chimeric construct, the F12-HIV nef
gene was amplified by PCR from the pcDNAI/F12-HIV nef construct (15) with oligoprimers carrying the
MluI (5' end) and ClaI (3' end) restriction sites
and overlapping the nef initiation and stop codons,
respectively. The amplified F12-HIV nef gene was then
inserted into a derivative of the pNL4-3 plasmid (1) carrying the MluI (present in a linker inserted between the
env stop and the nef start codons) and
ClaI (downstream of the nef stop codon, by
mutagenizing the ATC GAG sequence to ATC GAT) sites. pNL4-3 molecular
clones defective in nef (
nef) (11),
env (
env) (48), the Env gp120 CD4
binding domain (pNL-A1[CD4
]) (54), the Env
gp41 intracytoplasmic tail (HIV Tr712Env) (53), or the Nef
myristoylation signal (pMD) (11) were as previously described. A Nef myristoylation-defective (
myr) NL4-3/chi
molecular clone was obtained by reproducing the experimental strategy
pursued to recover the NL4-3/chi construct, except that the oligoprimer overlapping the F12-HIV nef start codon used for the PCR
amplification was designed by including nucleotide changes leading to
Ala-Ala consensus in place of the two N-terminal glycines. An
env-defective (
env) NL4-3chi molecular clone
was obtained by replacing the SalI/BamHI region
of the NL4-3/chi provirus with the homologous fragment from the wt
env HIV molecular clone (48).
wt and F12-HIV nef sequences were obtained by PCR
amplifications from pNL4-3 and pUc/F12-HIV (18) molecular
clones, respectively. Both primer sequences and the PCR methodology
have been described (15). After appropriate digestions,
nef genes were inserted into the
HindIII/BamHI sites of a pcDNA3 vector
(Invitrogen, San Diego, Calif.).
The pcDNA3/CD4 expressing vector was obtained by inserting the human
CD4 sequence (
32) into the polylinker
EcoRI/
EcoRV restriction
sites after excision from
the T4-pM7 construct (
31) by
EcoRI/
BamHI
digestions. The
BamHI
filling in was performed as described earlier
(
45).
The CD88X (
5), CD884, and CD44x receptors (
3), as
well as the amphotropic murine leukemia virus (MLV) and HIV T-tropic
(from HXB2c strain) Env proteins were expressed by a cytomegalovirus
immediate-early promoter-based vector. pCNefsg25GFP (a vector
expressing the NL4-3 Nef-green fluorescence protein [GFP] fusion
protein) and its counterpart expressing the GFP protein alone
were
already described (
39). F12-HIV
nef-GFP-expressing vector
was obtained by excising the wt
nef from the former construct
through
SacII/
NheI digestions and inserting the F12-HIV
nef gene
amplified by using primers carrying the
SacII (5' end) and
NheI
(3' end) restriction
sites overlapping the
nef initiation and
stop codons,
respectively. All the sequences obtained by PCR amplifications
were
checked by the dideoxy chain termination method with the
Sequenase II
kit (U.S. Biochemicals, Cleveland,
Ohio).
Cell cultures and transfections.
C8166 and CEMss cells were
grown in RPMI 1640 (Life Technologies, Gaithersburg, Md.) supplemented
with 10% heat-inactivated fetal calf serum (FCS). 293 cells, HeLa
cells and derivatives thereof were grown in Dulbecco modified minimal
essential medium supplemented with 10% of heat-inactivated FCS.
Stably transfected cell lines were maintained in the presence of 0.5 mg
of G418 antibiotic (70% activity; GIBCO Bethesda Research
Laboratories, Gaithersburg, Md.) per ml, except HeLaCD4-LTR-

gal
cells, which grow in G418 (0.1 mg/ml) plus hygromycin B (0.1 mg/ml)
(Boehringer GmbH, Mannheim, Germany). Human PBLs from healthy
donors
were activated for 48 h with phytohemagglutinin (PHA),
depleted of
the CD8 subpopulation through immunomagnetic negative
selection by
using anti-CD8-coupled beads (Dynal, Oslo, Norway),
and cultivated in
RPMI 1640 medium supplemented with 20% of heat-inactivated
FCS and 50 U of interleukin-2 (Roche, Nutley, N.J.) per
ml.
Transfections and cotransfections were performed by the calcium
phosphate method (
52).
HIV infections and detection.
Supernatants from transiently
transfected 293 cells were used as the source of wt,
nef,
or NL4-3/chi strains. For the infection experiments, supernatants were
concentrated by ultracentrifugation as described earlier
(10). Infections were performed by adsorbing the virus on
cells in a small volume for 1 h at 37°C with occasional shaking.
Cells were then extensively washed and refed. Virus detection in
supernatants of infected cells was performed by reverse transcriptase (RT) assay (41). RT activities of supernatants were measured as counts per minute per milliliter and normalized for 106
cells after background subtraction. Viral titrations were performed either by scoring the syncytium number on C8166 cells 5 days after infection (17) or by evaluating the number of blue cells 2 days after the infection of HeLaCD4-LTR-
gal cells (7).
Protein analyses.
To determine the pattern of intracellular
HIV structural proteins, Western blot assays of on infected cells were
performed by the enhanced chemiluminescence method (Amersham
Buckinghamshire, United Kingdom) as previously described
(15) by using a strongly reactive HIV-positive human serum.
Either specific polyclonal rabbit antisera or monoclonal antibodies
(MAbs) (all obtained by the AIDS Research and Reference Program) were
used in order to detect HIV regulatory proteins in infected or
transfected cells. Detection of virionic proteins in supernatants of
infected cells was performed as described earlier (6) by
ultracentrifuging clarified (22-µm-pore-size filtration) supernatants
at 100,000 × g, for 45 min at 4°C. Viral pellets
were then loaded onto a 20% sucrose cushion, ultracentrifuged at
95,000 × g for 150 min at 4°C, and finally dissolved
in a Western blot loading buffer (45).
Immunofluorescence analyses.
CD4 and CD8 membrane markers
were detected by direct immunofluorescence analyses as previously
described (4) by using, respectively, phycoerythrin
(PE)-conjugated Leu3a and Leu2a MAbs (Becton Dickinson, Mountain View,
Calif.).
Cells transfected with GFP fusion proteins and labeled with
PE-conjugated anti-CD4 MAbs were observed, and images were analyzed
by
using a TCS4D confocal microscope (Leika, Heidelberg,
Germany).
 |
RESULTS |
Production and titration of NL4-3/chi viral particles.
We
previously demonstrated that CD4+ cells stably transfected
with a vector expressing the F12-HIV nef gene maintain
levels of CD4 receptors similar to those in control cells and became resistant to the HIV infection (15). To explore the
mechanism of action underlying the F12-HIV nef-induced
inhibition of HIV release, we constructed the pNL4-3/chi chimeric
molecular clone by replacing the nef gene of the pNL4-3
molecular clone with the F12-HIV nef allele. In this manner,
large amounts of F12-HIV Nef protein could be coexpressed with the
remainder of the HIV protein pattern, excluding wt Nef. In most of our
experiments, both wt and Nef-defective (
nef) NL4-3 HIV
infectious molecular clones or viral strains were used as controls.
Infectious retroviral particles carrying the NL4-3/chi genome were
generated by transfection of 293 cells. The ability of
the pNL4-3/chi
genome to code for the F12-HIV Nef protein was
assessed by Western blot
analysis (not shown). Results obtained
by the RT assay performed on
supernatants from 293 cells at 48
h posttransfection are reported
in Fig.
1A. Transfection with
the pNL4-3/chi
molecular clone generated ca. threefold fewer viral
particles than in
cells transfected with wt HIV molecular clone,
but these results were
similar to the levels detectable in supernatants
from
nef
HIV-transfected cells. In contrast, titration on C8166
cells of
supernatant volumes normalized for RT activity demonstrated
a sevenfold
reduction and a >3-log decrease in HIV infectivity
for
nef and NL4-3/chi virions, respectively, compared to wt
HIV
(Fig.
1B).

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FIG. 1.
Amounts (A) and infectivity (B) of HIV particles
released by 293 cells transfected with pNL4-3, nef, or
pNL4-3/chi HIV molecular clones (3 µg in semiconfluent 6-cm dishes).
In panel A, RT activities in 1 ml of supernatant from each transfected
cell culture are reported as the mean values ± the standard
deviation (SD) from eight independent experiments. In panel B, fold
reductions of infectivity (as measured by scoring either the formation
of syncytia in C8166 cells infected with serial dilutions of
supernatants or the relative number of blue cells after the infection
of HeLaCD4-LTR- gal cells) with respect to volumes of supernatants
normalized for RT activity from pNL4-3 transfected 293 cells are
reported as the average values ± the SD from four separate
experiments. Viral titers of supernatants from pNL4-3 transfected cells
ranged from 1 × 106 to 3.5 × 106
50% tissue culture infective doses/ml. Columns: , wt; ,
nef; , NL4-3/chi.
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In order to assess a possible overhanging presence of noninfectious
viral particles in supernatants from pNL4-3/chi-transfected
cells, we
repeated viral titrations on HeLaCD4-LTR-

gal cells.
As shown in Fig.
1B and in contrast to the results obtained with
C8166 cells, viral
titers of supernatants from 293 cells transfected
with either
nef or NL4-3/chi were similar and both were reduced
ca.
fourfold compared to wt HIV. Thus, we can exclude the possibility
that
the results obtained in C8166 viral titrations depended on
the
generation of largely noninfectious NL4-3/chi viral
populations.
From these data we deduced that (i) the expression of the F12-HIV
nef gene does not positively influence the level of HIV
production upon transfection, as does wt
nef, and that (ii)
HIV
viral particles emerging from 293 cells transfected by
nef or
NL4-3/chi molecular clones show similar abilities
to enter target
cells (i.e., HeLaCD4-LTR-

gal). However, data from
the viral titrations
on C8166 cells suggest a dramatic impairment in
the replicative
capacity of NL4-3/chi viral
particles.
No viral particles could be detected in the supernatants of
CD4+ cells infected with the NL4-3/chi HIV strain.
In
order to better delineate the virological features of NL4-3/chi
virions, infection experiments were performed by challenging either
CEMss or PHA-stimulated CD8-depleted PBLs with a large dose (i.e., MOI
of 0.5, as determined by titration on HeLaCD4-LTR-
gal cells)
of NL4-3,
nef, or NL4-3/chi viral particles. At 24 h
after the challenge, infected cells were extensively washed and
reseeded, and the supernatants were tested for RT activity at different days postinfection. The data reported in Fig.
2 clearly demonstrate that strain NL4-3/chi
is unable to replicate in either CEMss cells or PHA-stimulated
CD8-depleted human PBLs despite the very high MOI used. Infection
experiments performed by utilizing a lower viral input produced
qualitatively superimposable results (not shown).

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FIG. 2.
RT activities at different days after infection with
nef or NL4-3/chi HIV strains of either CEMss cells (A) or
CD8-depleted PHA-stimulated human PBLs (B) (MOI, 0.5). Data from one
representative of five (CEMss cells) or two (CD8-depleted PBLs)
independent experiments are reported. Symbols: , wt; ,
nef; , NL4-3/chi.
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The lack of even aberrant viral particles in supernatants from
NL4-3/chi-infected cells was assessed by Western blot analysis
on
supernatant ultracentrifuged through a 20% sucrose cushion
(not
shown). Of note, infection with strain NL4-3/chi induced
a typically
prompt formation of enlarged cells and syncytia (whose
number depended
on viral input) that were much larger and more
prevalent with respect
to those detectable after infection with
either wt NL4-3 or
nef viral strains (not shown). As in cells
infected with
wt or
nef HIV, the infection with NL4-3/chi viral
particles at a higher MOI (1 to 2) led to a rapid death of the
whole
cell culture (not shown). Both virological and morphologic
observations
were reproduced by infecting C8166, 293/CD4, and
HeLaCD4 cells (not
shown).
NL4-3/chi infection leads to a viral protein pattern highly
reminiscent of that from
nef NL4-3-infected cells.
As demonstrated by infecting HeLaCD4-LTR-
gal cells, both the viral
entry efficiency and the ability to transactivate the
-galactosidase
gene appear to be indistinguishable between the
nef and
NL4-3/chi viral strains. In order to assess whether the block of the
viral release observed in NL4-3/chi-infected cells originated from a
defect in structural viral protein synthesis, CEMss cells were infected
(MOI, 0.5) and Western blot analyses were carried out 48 h after
challenge. As shown in Fig. 3A, the intracellular HIV protein pattern appears to be essentially
indistinguishable between
nef- and NL4-3/chi-infected
cells. As a control, the amounts of Nef protein on the same cell
lysates were also determined (Fig. 3B). The apparent reduced levels of
Nef production in NL4-3/chi with respect to wt HIV-infected cells is
the likely consequence of an impaired ability of the anti-Nef
polyclonal antibody used to bind the F12-HIV Nef protein. This was also
observed by testing a large panel of poly- or monoclonal anti-Nef
antibodies under different experimental conditions (not shown).

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FIG. 3.
Western blot analyses performed with 20 µg of proteins
from CEMss cells lysed 2 days after infection with either wt (lane A),
nef (lane B), or NL4-3/chi (lane D) HIV strains (MOI,
0.5). Cell lysates from uninfected CEMss cells (lane C) were included
as a negative control. Protein revelations were performed by using a
strong HIV-reactive serum from an AIDS patient (A) or a polyclonal
anti-Nef rabbit serum (B). HIV proteins are indicated on the right side
of each panel. Molecular size markers (in kilodaltons) are given on the
left side.
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Finally, cells infected with strain NL4-3/chi did not show variations
in the expression of the
tat,
rev,
vif,
vpr, or
vpu gene with respect to
either wt or
nef HIV-infected cells (not
shown).
In summary, these data indicate that the NL4-3/chi viral particles are
able to enter the cells and express both regulatory
and structural
viral proteins at levels comparable to those of
the
nef
HIV strain, but they fail to produce either infectious
or noninfectious
retrovirions.
The block of viral release from cells infected by NL4-3/chi strain
is not relieved by the coexpression of wt nef and is not
mediated by soluble factors.
To test whether the presence of wt
Nef protein could in some way relieve the F12-HIV Nef-induced
inhibition of viral assembly and release, 293/CD4 cells were
transfected with the pcDNA3/wt nef-expressing vector 24 h after infection (MOI, 1) with the NL4-3/chi or
nef
NL4-3 strain. After an additional 48 h, the RT activity was
measured in cell supernatants. As shown in Fig.
4, whereas the expression of wt
nef in
nef NL4-3-infected cells favors, as
expected, HIV production, no increase in RT activity could be
conversely seen in supernatants from NL4-3/chi-infected cells. From
these data we deduced that the possible positive action of wt Nef
protein expression on HIV replication is not sufficient to overcome the
block of viral replication imposed by the expression of F12-HIV Nef.

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FIG. 4.
RT activities in supernatants of 293/CD4 cells infected
with either nef or NL4-3/chi HIV and, after 24 h,
transfected with different amounts of a pcDNA3-wt nef
expressing vector. Viral input (MOI, 1) was adsorbed in 200 µl for
1 h at 37°C on 2 × 105 cells seeded in a
12-well plate. Cells were then extensively washed and refed. After
24 h, transfections with either 1 ( ) or 2 ( ) µg of
pcDNA3-wt nef vector were performed. After an additional
48 h, supernatants were collected and RT activities were measured.
Supernatants from mock-transfected infected cultures ( ) were
included as a control. Data from one representative of two independent
experiments are shown.
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Moreover, we checked whether the release of a soluble factor(s) from
NL4-3/chi-infected cells could mediate, through an autocrine
loop, the
inhibition of HIV release. Thus, supernatants of CEMss
cells infected
with a high MOI (0.5 to 1) of NL4-3/chi viral particles
were collected
24, 48, and 72 h postinfection and added to CEMss
cells infected
24 h in advance with different MOIs (0.1 or 0.01)
of either wt or
nef NL4-3 strains. No variations in RT activity
were
observed in supernatants from
nef or wt NL4-3-infected
CEMss
cells treated with CEMss-NL4-3/chi-conditioned medium with
respect
to the infected control cultures, even after the clearance of
viral particles by ultracentrifugation (data not shown). Thus,
we could
exclude the possibility that the block of viral release
observed in
CD4
+ cells infected with NL4-3/chi viral strain is mediated
by soluble
factors.
Membrane association is essential for the F12-HIV Nef inhibitory
effect.
Attempting to distinguish possible molecular targets of
the F12-HIV Nef action, we first decided to monitor whether the F12-HIV Nef membrane association is important for the above-described viral
retention. The N-terminal myristoylation allows Nef protein to localize
in the inner side of the cytoplasmic membranes and, in particular, of
the cell membrane (55). It has been demonstrated that Nef
myristoylation is necessary for the interaction with CD4 at the cell
membrane and, consequently, for the CD4 downregulation (27).
F12-HIV Nef does not show amino acid substitutions in the Nef
myristoylation signal (18) (i.e., GGXXS at the N-terminal end), and thus it presumably retains its capacity to be myristoylated and localized at the inner side of the membranes. We questioned whether
the F12-HIV Nef membrane association was necessary to induce the block
of the NL4-3/chi viral cycle. CEMss cells were then infected with
either the parental or
myr forms of NL4-3/chi and, as controls, with
wt or
myr NL4-3 HIV strains. In Fig.
5, the reversion of the NL4-3/chi to an
infectious strain as the consequence of the lack of the Nef N-terminal
myristoylation is clearly demonstrated. This result indicates that the
myristoylation and the consequent membrane association are essential
for the HIV-inhibitory effect of F12-HIV Nef protein.

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FIG. 5.
RT activities of supernatants recovered on different
days after infection of CEMss cells with myr NL4-3 ( )
or myr NL4-3/chi ( ) HIV (MOI, 0.5). As controls,
infections with strains NL4-3 ( ) and NL4-3/chi ( ) were
replicated. Data from one representative of two independent experiments
are reported.
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F12-HIV Nef may interact with CD4. (i) Inhibition of the CD4
downregulation induced by wt Nef.
The data presented above
strongly suggest that the block of the HIV replication cycle takes
place during viral assembly and/or release. Furthermore, we showed that
the membrane association of F12-HIV Nef is required for the HIV
inhibitory effect. The cell membrane is the cellular compartment where
a major Nef molecular target (i.e., CD4 receptor) is localized in its
biologically active conformation. Moreover, it is well documented that
wt Nef actively interacts with the CD4 intracytoplasmic domain
(22, 23, 26, 40). We tried to establish whether F12-HIV Nef
retains the ability to interact with CD4. This is conceivable, since
amino acidic sequences involved in binding of the CD4 intracytoplasmic
domain are well conserved in F12-HIV Nef (9). We also sought
to determine, if this is true, whether F12-HIV Nef-CD4 interaction is
involved in the block of HIV release.
We reasoned that if F12-HIV Nef interacts with CD4, a competition with
wt Nef for CD4 binding may be observed in cells coexpressing
both
nef alleles. Thus, we tested the possibility of the
expression
of F12-HIV Nef protein interfering with the wt Nef-induced
CD4
downregulation, assumed to be an indicator of wt Nef-CD4 binding.
Both the extent of CD4 downregulation induced by the expression
of wt
Nef protein and the lack of CD4 downregulation in cells
transiently
expressing F12-HIV Nef are shown in Fig.
6A.
The transfection
efficiency throughout these experiments was >80%, as
assessed
either by cotransfecting a GFP expressing vector or by using
vector
expressing Nef-GFP fusion proteins (not shown).

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FIG. 6.
FACS analyses on 293/CD4 cells transfected (A) or
cotransfected (B) with pcDNA3 vectors expressing either the wt or the
F12-HIV nef alleles. Transfections were performed on 2 × 105 cells seeded in a 12-well plate. (A) Levels of CD4
receptors were measured by using the Leu3A anti-CD4 PE-conjugated MAb
on mock-transfected 293/CD4 cells (b) and on cells transfected with 1 µg of either wt (c)- or F12-HIV nef (d)-expressing
vectors. (B) CD4 levels were measured on 293/CD4 cells transfected with
1.5 µg of empty pcDNA3 vector (b), 0.5 µg of pcDNA3-wt
nef plus 1 µg of empty pcDNA3 vector (c), 0.5 µg of
pcDNA3-wt nef plus 0.5 µg of pcDNA3-F12-HIV
nef vectors (d), or 0.5 µg of pcDNA3-wt nef
plus 1 µg of pcDNA3-F12-HIV nef vectors (e). Transfected
cells labeled with PE-conjugated nonspecific mouse immunoglobulin G
isotype were used as a control (lane a in both panels).
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293/CD4 cells were then cotransfected with the minimal amount of wt
nef expressing vector able to induce an easily
distinguishable
CD4 downregulation, together with equal or twofold
amounts of
F12-HIV
nef expressing vector (Fig.
6B). As
controls, 293/CD4
cells were also cotransfected with wt
nef
and empty pcDNA3 vectors
or with pcDNA3 alone. We observed that the
expression of F12-HIV
Nef inhibited in a dose-dependent manner the CD4
downregulation
induced by wt Nef protein (Fig.
6B). This finding is in
keeping
with the hypothesis that F12-HIV Nef may directly or indirectly
interact with the CD4 intracytoplasmic
domain.
(ii) Influence on CD4 distribution at the cell membrane.
It
was previously reported that the expression of wt Nef-GFP induces a CD4
redistribution from a uniform to a distinct punctate pattern at the
cell margin (22). The ability of wt Nef protein to induce a
CD4 clusterization was interpreted as a consequence of the interaction
with the CD4 intracytoplasmic tail and considered as an intermediate
step in CD4 downregulation (22). In order to highlight the
ability of F12-HIV Nef to interact with CD4 more directly, we labeled
293/CD4 cells with an anti-CD4 MAb after transfection with vectors
expressing F12-HIV Nef-GFP or, as a control, wt Nef/GFP or GFP alone.
The analyses with a confocal microscope demonstrated that cells
actively expressing F12-HIV Nef-GFP fusion protein show a clearly
distinguishable punctate pattern of CD4 at the cell membrane (Fig.
7C). However, in contrast to cells expressing
GFP alone (where a uniformly labeled cell margin is detectable [Fig.
7A]) and in cells expressing wt Nef-GFP protein (which show a massive
lack of CD4-specific staining [Fig. 7B]), these zones of accumulation
overlay a background of CD4 positivity. When the observations were
carried out on 293 cells stably expressing CD4 molecules truncated in
the intracytoplasmic domain (293/CD44x), a uniformly distributed CD4
pattern could be observed in all tested conditions (Fig. 7D to F). Of
note, remarkable differences could be observed in the intracytoplasmic distributions between the two Nef proteins. In fact, whereas wt Nef
localizes in discrete punctate aggregations, F12-HIV Nef (in conditions
of similar protein expression levels [not shown]) appears to
accumulate in larger amounts and in a more compartmentalized intracellular region (Fig. 7C and E).

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|
FIG. 7.
Confocal microscopy analyses of 293/CD4 (A to C) and
293/CD44x (D and E) cells labeled with a PE-conjugated anti-CD4 MAb
(see legend to Fig. 6) 48 h after transfection with vectors
expressing GFP alone (A and D), wt Nef-GFP (B and E), and F12-HIV
Nef-GFP fusion proteins (C and F). In panel C, the arrows indicate
some of the CD4 accumulation zones. The panel C and F images were
produced by using a laser power lower than that applied to obtain the
remainder of the panels. This allowed a better discrimination of both
F12-HIV Nef intracellular localization and membrane CD4 accumulation
zones.
|
|
The evidence that the F12-HIV
nef expression correlates with
a redistribution of CD4 at the cell membrane supports the idea
that
F12-HIV Nef protein retains the ability to interact with
the CD4
intracytoplasmic
domain.
The F12-HIV Nef-induced block of HIV release correlates with the
presence of both the CD4 intracytoplasmic tail and the HIV Env
products.
We questioned whether the CD4-F12-HIV Nef interaction
could be involved in the block of viral production. In addition,
attempting to distinguish a viral target(s) of the F12-HIV Nef
inhibitory effect, we also tried to determine whether viral Env
products are involved in the F12-HIV Nef-induced viral retention. The
expression of the Env products appears to be dispensable for viral
release (19, 48, 49) but may play a role in the polarization
of HIV budding (30). 293 cells stably expressing either CD4,
CD44x, CD884 (a CD8-based chimeric receptor bearing the CD4
intracytoplasmic tail) (3), or CD88x (a CD8 receptor
truncated in its intracytoplasmic domain) (5) were
cotransfected with
env wt or
env NL4-3/chi HIV molecular clones together with vectors expressing either HIV or
murine leukemia virus amphotropic Env proteins in a molar ratio of
1:10. All cell populations were scored in advance by
fluorescence-activated cell sorter (FACS) analyses as >95% positive
for the expression of either CD4 or CD8 membrane expression (not
shown). As reported in Table 1, a strong
impairment of HIV spread was detected in cells expressing the CD4
intracytoplasmic tail (whatever the extracellular domain) and
transfected with the NL4-3/chi molecular clone expressing HIV Env in
trans. These results indicate that (i) both the CD4 intracytoplasmic tail and the HIV Env products are required for the
F12-HIV Nef-induced viral retention and (ii) the CD4 extracellular domain does not seem to be involved in the F12-HIV Nef-induced inhibition of HIV release.
View this table:
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|
TABLE 1.
RT activities on supernatants of 293 cells stably
expressing CD4, CD44x, CD884, or CD88x receptors 48 h after the
cotransfection of env forms of either wt or pNL4-3/chi
molecular clones with either T-tropic HIV or MLV
Env-expressing vectorsa
|
|
In order to enforce the hypothesis about a role of the CD4
intracytoplasmic tail in F12-HIV Nef-induced viral retention, we
infected 293/CD44x cells with two different MOIs of either NL4-3/chi,
nef, or wt NL4-3 strains. As a control, 293 cells
expressing
full-length CD4 were used. Figure
8 clearly shows that the lack
of a CD4
intracytoplasmic tail allows the release of viral particles
from cells
infected with the chimeric virus. Conversely, no major
differences
could be observed in the RT activities measured with
supernatants
between the 293/CD4 and 293/CD44x cells infected
with either
nef or wt NL4-3 strains. Data from these infection
experiments confirm and extend our experimental evidence concerning
the
major role that the CD4 intracytoplasmic tail plays in the
F12-HIV
Nef-induced inhibition of viral release.

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FIG. 8.
RT activities in supernatants of either 293/CD4 or
293/CD44x cells 5 days after infection with two different MOIs (0.5 and
1; panels A and B, respectively) of wt ( ), nef ( ),
or NL4-3/chi ( ) HIV strains. Data from one representative of three
independent experiments are shown.
|
|
The HIV Env gp41 intracytoplasmic tail is required for F12-HIV
Nef-induced viral inhibition.
In order to define the region(s) of
HIV Env products required for F12-HIV Nef-induced viral retention, we
took advantage of the evidence that through transient cotransfection of
an F12-HIV nef expressing vector and a pNL4-3 molecular
clone, the F12-HIV Nef inhibitory effect has been fairly reproduced
(15). 293/CD4 cells were cotransfected with HIV molecular
clones defective for either the Env gp120 CD4 binding domain
(pNL-A1 [CD4
]) (54) or the Env gp41
intracytoplasmic tail (HIV Tr712Env) (53), together
with the pcDNA3-F12-HIV nef vector at different molar
ratios (from 1:0 to 1:10). As controls, similar cotransfections were
performed by using either the full infectious molecular clone pNL4-3 or
an HIV molecular clone defective for the expression of the whole
env gene (
env wt HIV). At 48 h after the
cotransfections, supernatants were collected, and the RT levels therein
were determined. The results (Fig. 9) clearly
show that the F12-HIV Nef inhibitory effect does not take place in the
absence of either the whole HIV Env protein or of the Env gp41
intracytoplasmic tail. Conversely, similar viral release inhibitions
have been detected in supernatants of cells transfected with pNL-A1
(CD4
) or wt HIV molecular clones. These results allow us
to propose the Env gp41 intracytoplasmic domain as a major viral target
of the F12-HIV Nef inhibitory effect.

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|
FIG. 9.
RT activities in supernatants of 293/CD4 cells 48 h
after the cotransfection at different molar ratios (from 1:0 to 1:10)
of either pNL4-3 ( ), env wt ( ), pNLA1
(CD4 ) ( ), or Tr712 Env ( ) HIV molecular clones (0.1 µg in a semiconfluent 24-well plate) with pcDNA3-F12-HIV
nef vector. In the 1:0 points, the RT activities in the
supernatants of cells transfected with each HIV molecular clone only
are reported. Importantly, cotransfections with empty pcDNA3 vector did
not significantly alter the RT levels in the supernatants of cells
transfected with different HIV molecular clones. For example, values
from supernatants of cells cotransfected with pNL4-3 and pcDNA3
plasmids ( ) were included. Values from one representative of two
independent experiments are reported.
|
|
 |
DISCUSSION |
The strong impairment in the replication of wt HIV induced by
F12-HIV nef expression (15) is a unique feature
among HIV or SIV nef alleles characterized so far. By
infecting cell clones stably expressing F12-HIV nef, we
previously demonstrated that the inhibitory effect acts at a very late
step of the viral replication cycle, presumably during the viral
assembly and/or release process (15). We also observed that
cells expressing F12-HIV Nef resist infection with
nef
HIV (15; R. Bona, unpublished observations). We thus
tentatively excluded the possibility that the F12-HIV Nef inhibitory
effect could be the consequence of a negative trans-dominant effect, as has already been described for Tat (20) and Rev
(33) mutants. In order to gain an experimental model in
which an optimal coexpression of F12-HIV Nef may be achieved together
with the full viral protein complement of a replication-competent HIV, but in the absence of wt Nef protein (that in most in vitro models is
dispensable for HIV replication), the NL4-3/chi HIV clone was constructed. In this manner, we were able to make a closer
discrimination of the effects of F12-HIV Nef on the HIV replicative cycle.
We demonstrate here that the expression of the F12-HIV nef
gene is itself sufficient to transform the highly infectious NL4-3 HIV
strain in a virus exclusively able to infect target cells abortively.
Nef, as well as Vpr and Vpu, has been shown to be dispensable for in
vitro HIV replication (11), except for the infection of
resting PBLs (37, 50). Thus, the observation reported here
that a slightly mutated nef gene may have such a dramatic
effect on the HIV replication cycle appears to be both intriguing and
original. More generally, our findings may enforce the hypothesis of a
correlation between the high frequency of recovery of
nef-mutated HIV genomes in long-term nonprogressor AIDS
patients and the delay in disease development (16, 29, 44).
The observation that cells infected with the NL4-3/chi strain express
an apparently unmodified pattern of viral proteins strongly suggests
that F12-HIV Nef-induced HIV inhibition occurs at a very late
replication step. This result appears to be consistent with that
already observed by infecting cells stably expressing the F12-HIV
nef gene (15). Furthermore, we found that the
functional defect(s) of the chimeric virus could not be relieved by
in-trans expression of wt nef. This finding
indicates that the inhibitory effect(s) of F12-HIV Nef protein could
overcome the wt Nef function(s) favoring HIV replication.
The amino acid sequences involved in Nef-induced CD4 downregulation
have been mapped in both the CD4 intracytoplasmic tail and the Nef
central core (23). The presence of a dileucine motif was
demonstrated in both CD4 (3) and Nef (14) to be
necessary for the CD4 downregulation. Through the utilization of either CD8 or CD4-Nef chimeric molecules, it has also been shown that Nef
possesses an intrinsic ability to induce receptor internalization by
means of a direct or indirect connection with the endocytic machinery
(34). Although F12-HIV Nef fails to induce CD4
downregulation, no amino acidic substitutions have been detected in the
sequences involved in the Nef-CD4 interaction (9). The
possibility that F12-HIV Nef maintains the ability to interact with CD4
may be inferred from our competition assay that demonstrated the
capacity of F12-HIV Nef protein to displace wt Nef from the CD4
molecule. However, we cannot formally exclude the possibility that such a result is the consequence, at least in part, of molecular events other than competition for CD4, e.g., the formation of wt-F12-HIV Nef
dimers or polymers lacking the ability to bind and/or internalize CD4
receptors. An additional support for the hypothesis that F12-HIV Nef
retains the ability to interact with CD4 comes from our fluorescence microscopy analyses. In fact, the coexpression of full-length CD4 and
F12-HIV Nef leads to a CD4 redistribution at the cell membrane similar
to that already observed for wt Nef (22). On the contrary,
this phenomenon does not occur in cells expressing CD4 truncated in its
intracytoplasmic domain. The lack of CD4 downregulation is likely at
the basis of the much stronger CD4-specific membrane labeling in
F12-HIV nef-transfected 293/CD4 cells with respect to those
transfected with wt nef.
Both transfection and infection experiments done with 293/CD44x cells
strongly support the hypothesis that a direct or indirect interaction
between F12-HIV Nef and the intracytoplasmic tail of CD4 receptors is
at the basis of the F12-HIV Nef-induced block of the viral release.
This possibility is very intriguing, considering that neither
nef expression (11) nor the CD4 intracytoplasmic domain (34) is necessary for completion of the HIV life
cycle. In addition, from the results obtained by Western blot analyses, we may exclude defects in synthesis or processing of HIV proteins. Also
noteworthy, from the transfection experiments carried out with the HIV
molecular clones with either deletions or mutations in the
env gene, is the suggestion that a critical role of the HIV
Env gp41 intracytoplasmic domain in the F12-HIV Nef inhibitory effect
may be inferred.
It has been reported that HIV Env constitutively undergoes
internalization (42). This process appears to be mediated by the interaction with clathrin adapter molecules (36). The
association of Env gp41 protein with Gag-derived viral core components
at the cell membrane may prevent Env internalization by interfering with the binding of clathrin adapter molecules, leading to viral assembly and/or release (36). On the other hand, it was well demonstrated that Nef interacts with components of the clathrin coat at
the plasma membrane, including clathrin and
subunits of adapter
protein complex-2 (a component of the endocytotic machinery) (22,
27). We may hypothesize that CD4-F12-HIV Nef binding induces the
recruitment of molecules from the endocytic machinery, as already shown
for wt Nef. In this regard, it should be noted that F12-HIV Nef retains
the dileucine motif (9) needed to address the cellular
sorting machinery (14). However, the lack of CD4
downregulation may alter the physiological recycling of clathrin-adaptin molecules which thus may bridge the CD4-F12-HIV Nef
complex with the Env gp41 intracytoplasmic tail. This could lead to an
abnormal accumulation and/or an altered spatial distribution of
clathrin molecules that may hinder their displacement from Env gp41 by
HIV Gag proteins, thus inhibiting correct viral assembly and/or
release. We consistently observed that the lack of either CD4 or Env
gp41 intracytoplasmic domains renders ineffective the antiviral action
of F12-HIV Nef. Our finding that removal of the F12-HIV Nef myristoyl
group correlates with the reversion of NL4-3/chi to an infectious
strain fulfills the hypothesis that crucial events leading to the viral
block occur in the neighborhood of intracellular membranes or, more
likely, of the inner side of the cell membrane. At the moment, a
detailed description of both the molecular basis of the F12-HIV Nef,
CD4, and Env interactions and their effects on correct HIV
morphogenesis represents an attractive experimental challenge.
In summary, our data delineate a model of inhibition of HIV replication
that has, to the best of our knowledge, no counterpart in the HIV
field. HIV genomes that in vivo express nef alleles with a
similar phenotype may have a role in the containment of HIV spread in
that they show a reduced replication capacity and also could behave as
interfering HIV genomes, as demonstrated for the whole F12-HIV genome
(18). The findings we obtained while attempting to elucidate
the mechanism of action of F12-HIV Nef-induced HIV inhibition are also
encouraging from the perspective of anti-HIV gene therapy strategy. It
is worth noting that the F12-HIV Nef inhibitory effect acts through the
major component needed for viral entry, thus guaranteeing the block of
viral spread from the cells attacked by HIV infection.
 |
ACKNOWLEDGMENTS |
HeLaCD4-LTR-
gal cells, pNL4-3, and
env HIV
(pMenv
) molecular clones and mono- or polyclonal antibodies
recognizing regulatory HIV proteins were obtained from the AIDS
Research and Reference Reagent Program, Division of AIDS, NIAID, NIH.
We are grateful to J. Guatelli, University of California, San
Diego, for kindly providing both the Nef-deficient (pDs) and the
myr Nef (pMd) HIV molecular clones; to V. Bosch,
Deutsches Krebsforschungszentrum, Heidelberg, Germany, for both Env
mutated HIV molecular clones; and to S. Pulciani, from our
laboratory, and to E. Vicenzi, DIBIT Institute, Milan, Italy, who
provided murine leukemia virus- and HIV Env-expressing vectors,
respectively. This study was definitively supported by C. Aiken,
Vanderbilt University School of Medicine, Nashville, Tenn., who
generously provided both CMX/CD44x and CMX/CD884 expression
vectors. We are indebted to A. Baur, Institut für Klinische
und Molekulare Virologie, Universität Erlangen, Erlangen, Germany, for the generous gift of both the CD88x expressing vector and
the pNL4-3 MluI/ClaI molecular clone and for
critical reading of the manuscript. We also acknowledge A. Lippa and
F. M. Regini for excellent editorial assistance.
This work was supported by grants from the AIDS Project of the Ministry
of Health, Rome, Italy.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Laboratory of
Virology, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy. Phone: 39-06-49903248. Fax: 39-06-49387184. E-mail: federico{at}virus1.net.iss.it.
 |
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Journal of Virology, January 2000, p. 483-492, Vol. 74, No. 1
0022-538X/0/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
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